Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0811280 | XP_003615317.1 | 96.864 | 287 | 8 | 1 | 1 | 287 | 1 | 286 | 0.0 | 578 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0811280 | sp|Q9LRH6|GAT25_ARATH | 58.586 | 198 | 80 | 1 | 72 | 267 | 81 | 278 | 5.40e-73 | 229 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0811280 | G7JYF5 | 96.864 | 287 | 8 | 1 | 1 | 287 | 1 | 286 | 0.0 | 578 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0811280 | TF | C2C2-GATA |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0811280 | Msa0851380 | 0.922119 | 1.487396e-88 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0811280 | MtrunA17_Chr5g0427661 | 96.864 | 287 | 8 | 1 | 1 | 287 | 1 | 286 | 0.0 | 578 |
| Msa0811280 | MtrunA17_Chr3g0132761 | 60.465 | 258 | 71 | 8 | 46 | 275 | 42 | 296 | 4.05e-93 | 278 |
| Msa0811280 | MtrunA17_Chr3g0132751 | 54.595 | 185 | 76 | 5 | 74 | 252 | 69 | 251 | 2.23e-57 | 187 |
| Msa0811280 | MtrunA17_Chr4g0049741 | 51.208 | 207 | 80 | 8 | 53 | 245 | 20 | 219 | 2.60e-56 | 184 |
| Msa0811280 | MtrunA17_Chr4g0002231 | 56.701 | 97 | 28 | 4 | 152 | 237 | 42 | 135 | 1.87e-26 | 101 |
| Msa0811280 | MtrunA17_Chr3g0102511 | 39.216 | 102 | 57 | 3 | 159 | 259 | 4 | 101 | 4.26e-15 | 75.1 |
| Msa0811280 | MtrunA17_Chr4g0002261 | 68.627 | 51 | 15 | 1 | 127 | 176 | 16 | 66 | 6.98e-15 | 68.2 |
| Msa0811280 | MtrunA17_Chr4g0002251 | 67.500 | 40 | 13 | 0 | 199 | 238 | 5 | 44 | 2.58e-13 | 63.9 |
| Msa0811280 | MtrunA17_Chr4g0061021 | 52.459 | 61 | 27 | 1 | 135 | 195 | 505 | 563 | 2.60e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0811280 | AT4G24470.1 | 58.586 | 198 | 80 | 1 | 72 | 267 | 81 | 278 | 5.48e-74 | 229 |
| Msa0811280 | AT4G24470.2 | 58.586 | 198 | 80 | 1 | 72 | 267 | 81 | 278 | 5.48e-74 | 229 |
| Msa0811280 | AT4G24470.3 | 62.778 | 180 | 65 | 1 | 72 | 249 | 81 | 260 | 1.47e-73 | 228 |
| Msa0811280 | AT1G51600.1 | 59.893 | 187 | 64 | 4 | 70 | 245 | 79 | 265 | 1.08e-68 | 215 |
| Msa0811280 | AT1G51600.2 | 59.893 | 187 | 64 | 4 | 70 | 245 | 79 | 265 | 1.08e-68 | 215 |
| Msa0811280 | AT3G21175.1 | 57.426 | 202 | 74 | 5 | 56 | 245 | 60 | 261 | 1.19e-67 | 213 |
| Msa0811280 | AT3G21175.2 | 57.711 | 201 | 73 | 5 | 56 | 245 | 60 | 259 | 9.53e-67 | 210 |
| Msa0811280 | AT3G21175.3 | 55.245 | 143 | 59 | 4 | 56 | 194 | 60 | 201 | 2.04e-37 | 132 |
| Msa0811280 | AT2G46670.1 | 50.909 | 55 | 27 | 0 | 129 | 183 | 126 | 180 | 3.79e-11 | 61.2 |
| Msa0811280 | AT2G46790.5 | 50.909 | 55 | 27 | 0 | 129 | 183 | 254 | 308 | 7.00e-11 | 62.4 |
| Msa0811280 | AT2G46790.4 | 50.909 | 55 | 27 | 0 | 129 | 183 | 254 | 308 | 7.00e-11 | 62.4 |
| Msa0811280 | AT2G46790.1 | 50.909 | 55 | 27 | 0 | 129 | 183 | 411 | 465 | 7.33e-11 | 62.8 |
| Msa0811280 | AT2G46790.2 | 50.909 | 55 | 27 | 0 | 129 | 183 | 294 | 348 | 8.56e-11 | 62.4 |
Find 98 sgRNAs with CRISPR-Local
Find 320 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAAACCTCTACAACAAATT+AGG | 0.141320 | 5_3:-40410248 | Msa0811280:five_prime_UTR |
| CGCTTCTCAAATTCTCTCTT+TGG | 0.239601 | 5_3:-40410217 | Msa0811280:five_prime_UTR |
| AAACTTTGAAGTGCAAATTC+AGG | 0.278085 | 5_3:+40410007 | None:intergenic |
| ATGGCCCTCGCCGCATCATT+GGG | 0.283489 | 5_3:+40406950 | None:intergenic |
| TCCAACTCCGATGCTGTTTA+CGG | 0.309806 | 5_3:-40410046 | Msa0811280:CDS |
| AAAACCTCTACAACAAATTA+GGG | 0.317019 | 5_3:-40410247 | Msa0811280:five_prime_UTR |
| GATGGCCCTCGCCGCATCAT+TGG | 0.329482 | 5_3:+40406949 | None:intergenic |
| TTTCAACAACTTGACTAAAC+TGG | 0.331435 | 5_3:-40405384 | Msa0811280:three_prime_UTR |
| GTTGTAGATGGTTGCTCAAT+AGG | 0.337983 | 5_3:+40405750 | None:intergenic |
| TTGGATGCACAGCTGTCTAT+TGG | 0.341864 | 5_3:-40405695 | Msa0811280:three_prime_UTR |
| TCGCTTTCGCCGGCGGTGAT+TGG | 0.347965 | 5_3:+40410142 | None:intergenic |
| CTGGTCTGTACCACAACTAT+TGG | 0.364949 | 5_3:+40407222 | None:intergenic |
| TAAATATATCAAAATACATT+GGG | 0.372782 | 5_3:+40405600 | None:intergenic |
| ACTTGACTAAACTGGTAAAC+TGG | 0.374073 | 5_3:-40405376 | Msa0811280:three_prime_UTR |
| TATACTGGTACTTGTCTGTT+TGG | 0.380856 | 5_3:-40405714 | Msa0811280:three_prime_UTR |
| GAAAGAAATACCTGCTCAAC+AGG | 0.391041 | 5_3:+40406075 | None:intergenic |
| GGTCACTTTGCAATGCTTGT+GGG | 0.405446 | 5_3:-40406918 | Msa0811280:CDS |
| GGCGAAAGCGACGACGGTTC+CGG | 0.410307 | 5_3:-40410130 | Msa0811280:CDS |
| ACTATTTGCTAGTACTATAC+TGG | 0.413848 | 5_3:-40405729 | Msa0811280:exon |
| ATGATGCGGCGAGGGCCATC+TGG | 0.424046 | 5_3:-40406946 | Msa0811280:CDS |
| AAGCCTCATTACTTAGGTTC+CGG | 0.424048 | 5_3:-40408750 | Msa0811280:CDS |
| GTCGATGCCGGCGTCGGGAC+CGG | 0.425728 | 5_3:+40410111 | None:intergenic |
| CAGCTTACGCTGTCGTTTCG+TGG | 0.436824 | 5_3:-40409971 | Msa0811280:CDS |
| AGGTCACTTTGCAATGCTTG+TGG | 0.439332 | 5_3:-40406919 | Msa0811280:CDS |
| TTTCTGATGGACTGGCATCC+TGG | 0.442732 | 5_3:+40407191 | None:intergenic |
| TTGGGGAAAACAACAAAATC+AGG | 0.451746 | 5_3:+40405618 | None:intergenic |
| TCAATCGGTGTTGTTACTGT+TGG | 0.455881 | 5_3:-40409699 | Msa0811280:CDS |
| CAATCGGTGTTGTTACTGTT+GGG | 0.455920 | 5_3:-40409698 | Msa0811280:CDS |
| AGATAATTCCTGATGTCTCT+TGG | 0.456240 | 5_3:+40406104 | None:intergenic |
| ATCTTTCTTTCCTCTTCTGC+CGG | 0.458420 | 5_3:+40408731 | None:intergenic |
| ATGTAGGATGCAGCGAAAGA+AGG | 0.464044 | 5_3:-40407278 | Msa0811280:intron |
| TGAGCGTCGATGCCGGCGTC+GGG | 0.466145 | 5_3:+40410106 | None:intergenic |
| TACTAGCAAATAGTTGTAGA+TGG | 0.470683 | 5_3:+40405738 | None:intergenic |
| AAATTCTCTCTTTGGTGCAA+TGG | 0.471067 | 5_3:-40410209 | Msa0811280:exon |
| ATCTACTGTACCTGTTGAGC+AGG | 0.474916 | 5_3:-40406085 | Msa0811280:intron |
| CGGTGCCTCAACAAAGTTTG+AGG | 0.475750 | 5_3:-40409643 | Msa0811280:CDS |
| ATTGAGAATCGAACCTTAGC+AGG | 0.477071 | 5_3:+40409920 | None:intergenic |
| CAAGCATTGCAAAGTGACCT+TGG | 0.478461 | 5_3:+40406922 | None:intergenic |
| GCCGTAAACAGCATCGGAGT+TGG | 0.479472 | 5_3:+40410045 | None:intergenic |
| TGTAGGATGCAGCGAAAGAA+GGG | 0.482115 | 5_3:-40407277 | Msa0811280:intron |
| ATCGAGAAGCCTCATTACTT+AGG | 0.494390 | 5_3:-40408756 | Msa0811280:CDS |
| TGGCATCCTGGCTAGAATCC+TGG | 0.494476 | 5_3:+40407203 | None:intergenic |
| TGACTCTGTTACGCCTGCTA+AGG | 0.495608 | 5_3:-40409933 | Msa0811280:intron |
| CTAAATATATCAAAATACAT+TGG | 0.495996 | 5_3:+40405599 | None:intergenic |
| ACCGCATTCACACCAGCATC+AGG | 0.496179 | 5_3:+40409662 | None:intergenic |
| TCAGTACGTAACGCACGGTA+TGG | 0.497109 | 5_3:-40410074 | Msa0811280:CDS |
| TTTCATGTTACAGGTTCAAT+CGG | 0.502821 | 5_3:-40409714 | Msa0811280:intron |
| GGAACCGTCGTCGCTTTCGC+CGG | 0.503198 | 5_3:+40410132 | None:intergenic |
| TACTTAGGTTCCGGCAGAAG+AGG | 0.507196 | 5_3:-40408741 | Msa0811280:CDS |
| GACGGTTCCGGTCCCGACGC+CGG | 0.509123 | 5_3:-40410118 | Msa0811280:CDS |
| CAACCCCAATGATGCGGCGA+GGG | 0.509404 | 5_3:-40406954 | Msa0811280:CDS |
| ACTACATCTAAGAAACAAGA+TGG | 0.513677 | 5_3:-40407247 | Msa0811280:CDS |
| TCCGATGCTGTTTACGGCAA+CGG | 0.517634 | 5_3:-40410040 | Msa0811280:CDS |
| TTGAGCGTCGATGCCGGCGT+CGG | 0.518484 | 5_3:+40410105 | None:intergenic |
| ATTGGTACTGTGGTGTTCAA+AGG | 0.519474 | 5_3:+40410160 | None:intergenic |
| AGACCTTTCCAAGAGACATC+AGG | 0.523306 | 5_3:-40406112 | Msa0811280:CDS |
| TCACGAGATTTCTGATGGAC+TGG | 0.530433 | 5_3:+40407183 | None:intergenic |
| GAAACCCTAATTTGTTGTAG+AGG | 0.536285 | 5_3:+40410243 | None:intergenic |
| GGTTGAGAGTGTTCGTACAT+TGG | 0.539771 | 5_3:+40410181 | None:intergenic |
| ACCGTCGTCGCTTTCGCCGG+CGG | 0.540258 | 5_3:+40410135 | None:intergenic |
| TAAATCTAGATGAAATTACA+TGG | 0.543242 | 5_3:-40405571 | Msa0811280:three_prime_UTR |
| TGCGATGACTAGGTTGATCA+AGG | 0.549206 | 5_3:-40405822 | Msa0811280:intron |
| CAAAGTGACCTTGGACCAGA+TGG | 0.549647 | 5_3:+40406931 | None:intergenic |
| TGAGAGTGTTCGTACATTGG+TGG | 0.550890 | 5_3:+40410184 | None:intergenic |
| TTGATGTTGAGCGTCGATGC+CGG | 0.559465 | 5_3:+40410099 | None:intergenic |
| TACAGACCAGGATTCTAGCC+AGG | 0.560530 | 5_3:-40407209 | Msa0811280:CDS |
| CAAGCTCACGAGATTTCTGA+TGG | 0.565628 | 5_3:+40407178 | None:intergenic |
| CAATAGTTGTGGTACAGACC+AGG | 0.567890 | 5_3:-40407221 | Msa0811280:CDS |
| GGATGTGAACAACCTGATGC+TGG | 0.568670 | 5_3:-40409674 | Msa0811280:CDS |
| CTGCCGGAACCTAAGTAATG+AGG | 0.570375 | 5_3:+40408747 | None:intergenic |
| ATTCCTGATGTCTCTTGGAA+AGG | 0.575092 | 5_3:+40406109 | None:intergenic |
| GAAGAGAGTGCAGAAGGTGT+AGG | 0.575675 | 5_3:+40410309 | None:intergenic |
| GGTGCCTCAACAAAGTTTGA+GGG | 0.580121 | 5_3:-40409642 | Msa0811280:CDS |
| ATAGGAGTGATGTTGTGTGC+AGG | 0.580688 | 5_3:+40405768 | None:intergenic |
| GCCGTTGCCGTAAACAGCAT+CGG | 0.590158 | 5_3:+40410039 | None:intergenic |
| GGCGAGGGCCATCTGGTCCA+AGG | 0.590488 | 5_3:-40406939 | Msa0811280:CDS |
| CAAGATGGGTCCAATAGTTG+TGG | 0.595326 | 5_3:-40407232 | Msa0811280:CDS |
| TTAAATAGTTGCACACATTG+TGG | 0.601041 | 5_3:-40406991 | Msa0811280:intron |
| CAAGGTAACAACTCAGACTG+TGG | 0.601587 | 5_3:-40405804 | Msa0811280:CDS |
| CAAAATCAACCCCAATGATG+CGG | 0.615905 | 5_3:-40406960 | Msa0811280:CDS |
| TCGGTGTTGTTACTGTTGGG+TGG | 0.618046 | 5_3:-40409695 | Msa0811280:CDS |
| TACGTCAAGAAGTTGCACTC+AGG | 0.620095 | 5_3:-40408681 | Msa0811280:intron |
| TTTGTGTTTGCGAAAGCGAG+GGG | 0.626213 | 5_3:+40410286 | None:intergenic |
| ACCACCCTCAAACTTTGTTG+AGG | 0.626395 | 5_3:+40409638 | None:intergenic |
| ACCGCCGGCGAAAGCGACGA+CGG | 0.634534 | 5_3:-40410136 | Msa0811280:CDS |
| TAGGAGTGATGTTGTGTGCA+GGG | 0.638031 | 5_3:+40405769 | None:intergenic |
| TGGCCCTCGCCGCATCATTG+GGG | 0.646878 | 5_3:+40406951 | None:intergenic |
| CTACATCTAAGAAACAAGAT+GGG | 0.649224 | 5_3:-40407246 | Msa0811280:CDS |
| AAATCTAGATGAAATTACAT+GGG | 0.649762 | 5_3:-40405570 | Msa0811280:three_prime_UTR |
| AAATATATCAAAATACATTG+GGG | 0.655044 | 5_3:+40405601 | None:intergenic |
| ACCACAGTACCAATCACCGC+CGG | 0.655305 | 5_3:-40410151 | Msa0811280:CDS |
| GCCTCAACAAAGTTTGAGGG+TGG | 0.655336 | 5_3:-40409639 | Msa0811280:intron |
| GATGCTGTTTACGGCAACGG+CGG | 0.661829 | 5_3:-40410037 | Msa0811280:CDS |
| ACCTGATGCTGGTGTGAATG+CGG | 0.662406 | 5_3:-40409663 | Msa0811280:CDS |
| CAAATTCAGTACGTAACGCA+CGG | 0.665723 | 5_3:-40410079 | Msa0811280:CDS |
| TCAACCCCAATGATGCGGCG+AGG | 0.668347 | 5_3:-40406955 | Msa0811280:CDS |
| GCCGGCGGTGATTGGTACTG+TGG | 0.669157 | 5_3:+40410150 | None:intergenic |
| TTGTGTTTGCGAAAGCGAGG+GGG | 0.698518 | 5_3:+40410287 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGTTGAATTTTTTTATTATT+TGG | - | chr5_3:40405933-40405952 | Msa0811280:intron | 10.0% |
| !!! | GTTGAATTTTTTTATTATTT+GGG | - | chr5_3:40405934-40405953 | Msa0811280:intron | 10.0% |
| !!! | TTTATTTTATGTTTAAATGT+AGG | - | chr5_3:40408396-40408415 | Msa0811280:intron | 10.0% |
| !!! | TTTGATTAAAATTTGTTTAA+GGG | + | chr5_3:40409731-40409750 | None:intergenic | 10.0% |
| !!! | TTTTGATTAAAATTTGTTTA+AGG | + | chr5_3:40409732-40409751 | None:intergenic | 10.0% |
| !! | TAAATATATCAAAATACATT+GGG | + | chr5_3:40410093-40410112 | None:intergenic | 10.0% |
| !!! | TGTTTATTATTGATTTTTCT+TGG | - | chr5_3:40405823-40405842 | Msa0811280:intron | 15.0% |
| !! | CATTATTCATAAATCATAAT+AGG | - | chr5_3:40406400-40406419 | Msa0811280:intron | 15.0% |
| !!! | CTTAATCTTGTATTTTTTAA+TGG | - | chr5_3:40408268-40408287 | Msa0811280:intron | 15.0% |
| !! | AAAAAAAAAAAAAAAGCCTT+TGG | + | chr5_3:40408829-40408848 | None:intergenic | 15.0% |
| !!! | TTTGGGAATATTAAAATTTT+GGG | - | chr5_3:40409300-40409319 | Msa0811280:intron | 15.0% |
| !! | AAATATATCAAAATACATTG+GGG | + | chr5_3:40410092-40410111 | None:intergenic | 15.0% |
| !! | CTAAATATATCAAAATACAT+TGG | + | chr5_3:40410094-40410113 | None:intergenic | 15.0% |
| !! | ATTTGAATATGCATTAGATT+TGG | - | chr5_3:40406163-40406182 | Msa0811280:intron | 20.0% |
| !! | TTTGAATATGCATTAGATTT+GGG | - | chr5_3:40406164-40406183 | Msa0811280:intron | 20.0% |
| !! | AAATTATATCTGATACGTAT+CGG | + | chr5_3:40406547-40406566 | None:intergenic | 20.0% |
| !! | AGTGGAAATTTATAATTCTT+TGG | - | chr5_3:40406862-40406881 | Msa0811280:intron | 20.0% |
| !! | GTGGAAATTTATAATTCTTT+GGG | - | chr5_3:40406863-40406882 | Msa0811280:intron | 20.0% |
| !!! | ATTTATAATTCTTTGGGTTT+TGG | - | chr5_3:40406869-40406888 | Msa0811280:intron | 20.0% |
| !!! | TGTAATTGACTATATTTTGT+AGG | + | chr5_3:40406915-40406934 | None:intergenic | 20.0% |
| !! | AAGAGAATAATATAACTGAA+TGG | - | chr5_3:40407201-40407220 | Msa0811280:CDS | 20.0% |
| !! | AATCTGAAAATAATTGTAAG+AGG | + | chr5_3:40407307-40407326 | None:intergenic | 20.0% |
| !! | TATATTACATAGAATCATGT+TGG | - | chr5_3:40407334-40407353 | Msa0811280:intron | 20.0% |
| !! | TTTATCAACAAATTTAACAG+AGG | + | chr5_3:40407668-40407687 | None:intergenic | 20.0% |
| !!! | TTGTTTCTAAACTAAACAAT+AGG | + | chr5_3:40407961-40407980 | None:intergenic | 20.0% |
| !! | CTATGAGATATAAATTATTG+AGG | + | chr5_3:40408094-40408113 | None:intergenic | 20.0% |
| !!! | TATAAAAATGTATTGATGAG+AGG | + | chr5_3:40408245-40408264 | None:intergenic | 20.0% |
| !!! | TCTCATCAATACATTTTTAT+AGG | - | chr5_3:40408244-40408263 | Msa0811280:intron | 20.0% |
| !! | CATAAAATAAAGAGTGAAAT+TGG | + | chr5_3:40408387-40408406 | None:intergenic | 20.0% |
| !!! | TCGGAACAAAAAATATATTT+TGG | + | chr5_3:40408556-40408575 | None:intergenic | 20.0% |
| !!! | TTTTTTTGAAAATTTGTCTG+TGG | - | chr5_3:40408843-40408862 | Msa0811280:intron | 20.0% |
| !!! | TTTTTTGAAAATTTGTCTGT+GGG | - | chr5_3:40408844-40408863 | Msa0811280:intron | 20.0% |
| !!! | TTTGTTGTGAAACAAATTTA+TGG | + | chr5_3:40409225-40409244 | None:intergenic | 20.0% |
| !!! | GTTTGGGAATATTAAAATTT+TGG | - | chr5_3:40409299-40409318 | Msa0811280:intron | 20.0% |
| !! | CATCATAATCTATACTATAA+AGG | - | chr5_3:40409664-40409683 | Msa0811280:CDS | 20.0% |
| !! | ATCTATACTATAAAGGAAAT+AGG | - | chr5_3:40409671-40409690 | Msa0811280:CDS | 20.0% |
| !! | TAAATCTAGATGAAATTACA+TGG | - | chr5_3:40410119-40410138 | Msa0811280:CDS | 20.0% |
| !! | AAATCTAGATGAAATTACAT+GGG | - | chr5_3:40410120-40410139 | Msa0811280:CDS | 20.0% |
| !!! | TAGAGGTTTTGAGTTTAATT+GGG | + | chr5_3:40405433-40405452 | None:intergenic | 25.0% |
| ! | AAAACCTCTACAACAAATTA+GGG | - | chr5_3:40405443-40405462 | Msa0811280:intron | 25.0% |
| ! | TGGGATTGAAAATTTGTATT+TGG | - | chr5_3:40405953-40405972 | Msa0811280:intron | 25.0% |
| ! | ACATAGGAATTGGTAAATTA+TGG | - | chr5_3:40406345-40406364 | Msa0811280:intron | 25.0% |
| ! | CATAGGAATTGGTAAATTAT+GGG | - | chr5_3:40406346-40406365 | Msa0811280:intron | 25.0% |
| !!! | ATTTGGCAATTTTTGAGTAA+CGG | + | chr5_3:40406436-40406455 | None:intergenic | 25.0% |
| ! | ACTCAAAAATTGCCAAATAT+CGG | - | chr5_3:40406438-40406457 | Msa0811280:intron | 25.0% |
| !! | GATATAATTTTATTGTGCTC+CGG | - | chr5_3:40406557-40406576 | Msa0811280:intron | 25.0% |
| ! | ATAAGTACTACTACTATCAT+GGG | + | chr5_3:40406592-40406611 | None:intergenic | 25.0% |
| !! | AGTACTTATGATTTCCTTTT+TGG | - | chr5_3:40406603-40406622 | Msa0811280:intron | 25.0% |
| ! | ATACATGCTTCATAGATAAT+AGG | - | chr5_3:40406817-40406836 | Msa0811280:intron | 25.0% |
| ! | TATACAACAACAGATATTGA+TGG | - | chr5_3:40407524-40407543 | Msa0811280:intron | 25.0% |
| ! | ATACAACAACAGATATTGAT+GGG | - | chr5_3:40407525-40407544 | Msa0811280:intron | 25.0% |
| ! | TGAGAATCAAAATCATTTGA+AGG | + | chr5_3:40407782-40407801 | None:intergenic | 25.0% |
| ! | TTTATATCTCATAGAGTGAA+AGG | - | chr5_3:40408100-40408119 | Msa0811280:intron | 25.0% |
| !!! | TTTAATGGACTAAAAACTGA+TGG | - | chr5_3:40408283-40408302 | Msa0811280:intron | 25.0% |
| !!! | GATGCATTGTTATTTCATAT+TGG | + | chr5_3:40408616-40408635 | None:intergenic | 25.0% |
| ! | TTTAACCACCATTCTTTAAA+TGG | - | chr5_3:40408671-40408690 | Msa0811280:intron | 25.0% |
| !! | TAAACATGCCATTTAAAGAA+TGG | + | chr5_3:40408682-40408701 | None:intergenic | 25.0% |
| ! | AAGATAAAGCAAAACAAACA+CGG | + | chr5_3:40409074-40409093 | None:intergenic | 25.0% |
| !!! | AGATATTTTGAAATGTCTTG+TGG | - | chr5_3:40409147-40409166 | Msa0811280:intron | 25.0% |
| !!! | ATATTGCTTTTTGAACTTTG+TGG | - | chr5_3:40409334-40409353 | Msa0811280:intron | 25.0% |
| !!! | TTTCTTTTAAAACTTGTCAG+AGG | - | chr5_3:40409362-40409381 | Msa0811280:intron | 25.0% |
| !!! | TTCTTTTAAAACTTGTCAGA+GGG | - | chr5_3:40409363-40409382 | Msa0811280:intron | 25.0% |
| !! | ATAAAGGAAATAGGTTGTTT+TGG | - | chr5_3:40409680-40409699 | Msa0811280:CDS | 25.0% |
| !!! | TAAAGGAAATAGGTTGTTTT+GGG | - | chr5_3:40409681-40409700 | Msa0811280:CDS | 25.0% |
| !! | TGTTTAAGGGTATAATTGAA+AGG | + | chr5_3:40409718-40409737 | None:intergenic | 25.0% |
| ! | CAAGCAAAAAAATGGTAAAA+TGG | + | chr5_3:40409850-40409869 | None:intergenic | 25.0% |
| !! | ATTTTGTCTGGATATACTTT+TGG | - | chr5_3:40410164-40410183 | Msa0811280:CDS | 25.0% |
| !! | TTTTGTCTGGATATACTTTT+GGG | - | chr5_3:40410165-40410184 | Msa0811280:CDS | 25.0% |
| !!! | GTAGAGGTTTTGAGTTTAAT+TGG | + | chr5_3:40405434-40405453 | None:intergenic | 30.0% |
| CAAAACCTCTACAACAAATT+AGG | - | chr5_3:40405442-40405461 | Msa0811280:intron | 30.0% | |
| !! | AAACTTTGAAGTGCAAATTC+AGG | + | chr5_3:40405686-40405705 | None:intergenic | 30.0% |
| ! | TGTATTTGGTTTCATGTTAC+AGG | - | chr5_3:40405967-40405986 | Msa0811280:intron | 30.0% |
| TTTCATGTTACAGGTTCAAT+CGG | - | chr5_3:40405976-40405995 | Msa0811280:intron | 30.0% | |
| ! | ATTTTCAACATGTTACAAGC+TGG | + | chr5_3:40406138-40406157 | None:intergenic | 30.0% |
| !! | TTGATAATGATCCTCAACAT+AGG | - | chr5_3:40406329-40406348 | Msa0811280:intron | 30.0% |
| ATTTACCAATTCCTATGTTG+AGG | + | chr5_3:40406343-40406362 | None:intergenic | 30.0% | |
| !!! | TTTGGCAATTTTTGAGTAAC+GGG | + | chr5_3:40406435-40406454 | None:intergenic | 30.0% |
| TTAATTGTTTGATACTGTCC+CGG | + | chr5_3:40406493-40406512 | None:intergenic | 30.0% | |
| CATAAGTACTACTACTATCA+TGG | + | chr5_3:40406593-40406612 | None:intergenic | 30.0% | |
| ! | CTTATGATTTCCTTTTTGGA+CGG | - | chr5_3:40406607-40406626 | Msa0811280:intron | 30.0% |
| TACTTGACATGATAAGGATA+CGG | + | chr5_3:40406798-40406817 | None:intergenic | 30.0% | |
| CATGTATACTTGACATGATA+AGG | + | chr5_3:40406804-40406823 | None:intergenic | 30.0% | |
| TTCATCATGCAAATGATGAT+TGG | - | chr5_3:40407097-40407116 | Msa0811280:intron | 30.0% | |
| TCATCATGCAAATGATGATT+GGG | - | chr5_3:40407098-40407117 | Msa0811280:intron | 30.0% | |
| AAAGAAAACACGATCATACT+GGG | + | chr5_3:40407272-40407291 | None:intergenic | 30.0% | |
| ATAGAATCATGTTGGCATTT+AGG | - | chr5_3:40407342-40407361 | Msa0811280:intron | 30.0% | |
| ! | GTATAGTCAATTTGGTAACA+GGG | + | chr5_3:40407509-40407528 | None:intergenic | 30.0% |
| ! | TGTATAGTCAATTTGGTAAC+AGG | + | chr5_3:40407510-40407529 | None:intergenic | 30.0% |
| CTGTTGTTGTATAGTCAATT+TGG | + | chr5_3:40407517-40407536 | None:intergenic | 30.0% | |
| ! | CAATTTCAACTTCGTTGATT+TGG | - | chr5_3:40407548-40407567 | Msa0811280:intron | 30.0% |
| !! | CTTTTTAATTGTGGAGGAAT+TGG | - | chr5_3:40407605-40407624 | Msa0811280:intron | 30.0% |
| !! | TTCATTTTTGCCCTTTTGAT+TGG | - | chr5_3:40407690-40407709 | Msa0811280:intron | 30.0% |
| GAAAATAACACACAAAACCA+AGG | + | chr5_3:40407719-40407738 | None:intergenic | 30.0% | |
| CTAAGTTATCCTCAAATTCT+CGG | + | chr5_3:40407829-40407848 | None:intergenic | 30.0% | |
| ! | TGTTAGTTTCTTGTCTACTA+TGG | + | chr5_3:40407998-40408017 | None:intergenic | 30.0% |
| TGGTGTATGCTATATGTAAT+TGG | - | chr5_3:40408154-40408173 | Msa0811280:intron | 30.0% | |
| AAAGTGCAACATAGATAACA+TGG | + | chr5_3:40408330-40408349 | None:intergenic | 30.0% | |
| ATGTTGCACTTTCTCTTATT+TGG | - | chr5_3:40408338-40408357 | Msa0811280:intron | 30.0% | |
| ACTACATCTAAGAAACAAGA+TGG | - | chr5_3:40408443-40408462 | Msa0811280:intron | 30.0% | |
| CTACATCTAAGAAACAAGAT+GGG | - | chr5_3:40408444-40408463 | Msa0811280:intron | 30.0% | |
| !!! | GCTTGTTTTTACTGTTGTTA+TGG | - | chr5_3:40408530-40408549 | Msa0811280:intron | 30.0% |
| TTAAATAGTTGCACACATTG+TGG | - | chr5_3:40408699-40408718 | Msa0811280:CDS | 30.0% | |
| AAAATGAAGAATCTAGCTAG+TGG | - | chr5_3:40409242-40409261 | Msa0811280:intron | 30.0% | |
| ! | AGACGATAATTCGATTTTTG+AGG | + | chr5_3:40409412-40409431 | None:intergenic | 30.0% |
| AAAATCGAATTATCGTCTCT+TGG | - | chr5_3:40409414-40409433 | Msa0811280:intron | 30.0% | |
| AAATCGAATTATCGTCTCTT+GGG | - | chr5_3:40409415-40409434 | Msa0811280:intron | 30.0% | |
| GGGAACTGTTAATAATAAAC+TGG | + | chr5_3:40409515-40409534 | None:intergenic | 30.0% | |
| TACTAGCAAATAGTTGTAGA+TGG | + | chr5_3:40409955-40409974 | None:intergenic | 30.0% | |
| ! | ACTATTTGCTAGTACTATAC+TGG | - | chr5_3:40409961-40409980 | Msa0811280:CDS | 30.0% |
| TTTCAACAACTTGACTAAAC+TGG | - | chr5_3:40410306-40410325 | Msa0811280:five_prime_UTR | 30.0% | |
| !! | GAAACCCTAATTTGTTGTAG+AGG | + | chr5_3:40405450-40405469 | None:intergenic | 35.0% |
| ! | AAATTCTCTCTTTGGTGCAA+TGG | - | chr5_3:40405481-40405500 | Msa0811280:three_prime_UTR | 35.0% |
| AAGGTTCGATTCTCAATTGT+TGG | - | chr5_3:40405776-40405795 | Msa0811280:CDS | 35.0% | |
| ! | GTGATTAATTTTCCGATCTG+TGG | - | chr5_3:40406216-40406235 | Msa0811280:intron | 35.0% |
| TCAACAATACCTGTAGGTTA+GGG | - | chr5_3:40406260-40406279 | Msa0811280:intron | 35.0% | |
| TAGGTTAGGGGATATAAAGA+TGG | - | chr5_3:40406273-40406292 | Msa0811280:intron | 35.0% | |
| !! | ATATAAAGATGGCTTGGTGT+GGG | - | chr5_3:40406284-40406303 | Msa0811280:intron | 35.0% |
| ATGATCCTCAACATAGGAAT+TGG | - | chr5_3:40406335-40406354 | Msa0811280:intron | 35.0% | |
| ATGAATACACTCTGTGTGAA+TGG | - | chr5_3:40406377-40406396 | Msa0811280:intron | 35.0% | |
| !!! | TTGGCAATTTTTGAGTAACG+GGG | + | chr5_3:40406434-40406453 | None:intergenic | 35.0% |
| ! | ATTTTATTGTGCTCCGGATA+CGG | - | chr5_3:40406563-40406582 | Msa0811280:intron | 35.0% |
| ! | ATCTTAAGTACCGTCCAAAA+AGG | + | chr5_3:40406620-40406639 | None:intergenic | 35.0% |
| GATTAATGTTCAAGTGCAAG+TGG | - | chr5_3:40406844-40406863 | Msa0811280:intron | 35.0% | |
| CATCATTTGCATGATGAATC+TGG | + | chr5_3:40407095-40407114 | None:intergenic | 35.0% | |
| TATTAGATCTGTTAGCAAGC+TGG | - | chr5_3:40407229-40407248 | Msa0811280:CDS | 35.0% | |
| CAAAGAAAACACGATCATAC+TGG | + | chr5_3:40407273-40407292 | None:intergenic | 35.0% | |
| AATAATTGTAAGAGGAAGCC+TGG | + | chr5_3:40407299-40407318 | None:intergenic | 35.0% | |
| !! | ATTGCCTTCTCATTTTGAAG+TGG | - | chr5_3:40407434-40407453 | Msa0811280:intron | 35.0% |
| ! | TATGCCACTTCAAAATGAGA+AGG | + | chr5_3:40407441-40407460 | None:intergenic | 35.0% |
| !!! | TTCTCATTTTGAAGTGGCAT+AGG | - | chr5_3:40407440-40407459 | Msa0811280:intron | 35.0% |
| ! | GCATAGGATGGTAGATTTTA+CGG | - | chr5_3:40407456-40407475 | Msa0811280:intron | 35.0% |
| !! | CGGGTCTGACAATTTAATTT+TGG | - | chr5_3:40407483-40407502 | Msa0811280:intron | 35.0% |
| AACCTATACTATTGAGAACC+TGG | - | chr5_3:40407581-40407600 | Msa0811280:intron | 35.0% | |
| !! | GAACCTGGTCTTTTTAATTG+TGG | - | chr5_3:40407596-40407615 | Msa0811280:intron | 35.0% |
| CGAGAATTTGAGGATAACTT+AGG | - | chr5_3:40407827-40407846 | Msa0811280:intron | 35.0% | |
| GAATGTTGTTCTTTGACTAG+GGG | + | chr5_3:40408047-40408066 | None:intergenic | 35.0% | |
| GGAATGTTGTTCTTTGACTA+GGG | + | chr5_3:40408048-40408067 | None:intergenic | 35.0% | |
| ATCATGCATCCAAGATACAT+GGG | + | chr5_3:40408070-40408089 | None:intergenic | 35.0% | |
| TATCATGCATCCAAGATACA+TGG | + | chr5_3:40408071-40408090 | None:intergenic | 35.0% | |
| ATATCTCATAGAGTGAAAGG+TGG | - | chr5_3:40408103-40408122 | Msa0811280:intron | 35.0% | |
| ATTGCTACAACTACAAGTCT+CGG | + | chr5_3:40408575-40408594 | None:intergenic | 35.0% | |
| ! | ACATGCCATTTAAAGAATGG+TGG | + | chr5_3:40408679-40408698 | None:intergenic | 35.0% |
| TGCAAATTCCAATGCAATGA+AGG | + | chr5_3:40408942-40408961 | None:intergenic | 35.0% | |
| ATTTACGAGCTCTGTCTATT+TGG | - | chr5_3:40409117-40409136 | Msa0811280:intron | 35.0% | |
| !!! | TGGTCTATTTTTGCACTGTT+TGG | - | chr5_3:40409282-40409301 | Msa0811280:intron | 35.0% |
| !!! | GGTCTATTTTTGCACTGTTT+GGG | - | chr5_3:40409283-40409302 | Msa0811280:intron | 35.0% |
| !! | ATTCGATTTTTGAGGATGAG+TGG | + | chr5_3:40409404-40409423 | None:intergenic | 35.0% |
| AATCGAATTATCGTCTCTTG+GGG | - | chr5_3:40409416-40409435 | Msa0811280:intron | 35.0% | |
| GATTCACAGTTGAACGAATT+AGG | + | chr5_3:40409472-40409491 | None:intergenic | 35.0% | |
| AGATAATTCCTGATGTCTCT+TGG | + | chr5_3:40409589-40409608 | None:intergenic | 35.0% | |
| AGTCATCGCAAGCAAAAAAA+TGG | + | chr5_3:40409858-40409877 | None:intergenic | 35.0% | |
| !!! | TTTTTTTGCTTGCGATGACT+AGG | - | chr5_3:40409858-40409877 | Msa0811280:intron | 35.0% |
| TATACTGGTACTTGTCTGTT+TGG | - | chr5_3:40409976-40409995 | Msa0811280:CDS | 35.0% | |
| TTGGGGAAAACAACAAAATC+AGG | + | chr5_3:40410075-40410094 | None:intergenic | 35.0% | |
| ! | GATTCAAGTGAGATTTTGTC+TGG | - | chr5_3:40410152-40410171 | Msa0811280:CDS | 35.0% |
| ACTTGACTAAACTGGTAAAC+TGG | - | chr5_3:40410314-40410333 | Msa0811280:five_prime_UTR | 35.0% | |
| ! | TTTTGTGTTTGCGAAAGCGA+GGG | + | chr5_3:40405408-40405427 | None:intergenic | 40.0% |
| ! | TTTTTGTGTTTGCGAAAGCG+AGG | + | chr5_3:40405409-40405428 | None:intergenic | 40.0% |
| CGCTTCTCAAATTCTCTCTT+TGG | - | chr5_3:40405473-40405492 | Msa0811280:intron | 40.0% | |
| ATTGGTACTGTGGTGTTCAA+AGG | + | chr5_3:40405533-40405552 | None:intergenic | 40.0% | |
| CAAATTCAGTACGTAACGCA+CGG | - | chr5_3:40405611-40405630 | Msa0811280:three_prime_UTR | 40.0% | |
| ATTGAGAATCGAACCTTAGC+AGG | + | chr5_3:40405773-40405792 | None:intergenic | 40.0% | |
| !! | TCAATCGGTGTTGTTACTGT+TGG | - | chr5_3:40405991-40406010 | Msa0811280:intron | 40.0% |
| !! | CAATCGGTGTTGTTACTGTT+GGG | - | chr5_3:40405992-40406011 | Msa0811280:intron | 40.0% |
| GGGAAGTAAATACTAGTGAG+TGG | - | chr5_3:40406184-40406203 | Msa0811280:intron | 40.0% | |
| CTTAGGTCAACAATACCTGT+AGG | - | chr5_3:40406254-40406273 | Msa0811280:intron | 40.0% | |
| GTCAACAATACCTGTAGGTT+AGG | - | chr5_3:40406259-40406278 | Msa0811280:intron | 40.0% | |
| CAACAATACCTGTAGGTTAG+GGG | - | chr5_3:40406261-40406280 | Msa0811280:intron | 40.0% | |
| CTTTATATCCCCTAACCTAC+AGG | + | chr5_3:40406272-40406291 | None:intergenic | 40.0% | |
| TAGGGGATATAAAGATGGCT+TGG | - | chr5_3:40406278-40406297 | Msa0811280:intron | 40.0% | |
| !! | GATATAAAGATGGCTTGGTG+TGG | - | chr5_3:40406283-40406302 | Msa0811280:intron | 40.0% |
| ATATCAGGATGTATCCGTGT+CGG | + | chr5_3:40406467-40406486 | None:intergenic | 40.0% | |
| GGATACATCCTGATATGTAC+CGG | - | chr5_3:40406471-40406490 | Msa0811280:intron | 40.0% | |
| GATACATCCTGATATGTACC+GGG | - | chr5_3:40406472-40406491 | Msa0811280:intron | 40.0% | |
| ATGATAAGGATACGGCGATA+TGG | + | chr5_3:40406790-40406809 | None:intergenic | 40.0% | |
| !! | AATTCTTTGGGTTTTGGTGC+AGG | - | chr5_3:40406875-40406894 | Msa0811280:intron | 40.0% |
| ATCGAGAAGCCTCATTACTT+AGG | - | chr5_3:40406934-40406953 | Msa0811280:CDS | 40.0% | |
| AAGCCTCATTACTTAGGTTC+CGG | - | chr5_3:40406940-40406959 | Msa0811280:CDS | 40.0% | |
| ATCTTTCTTTCCTCTTCTGC+CGG | + | chr5_3:40406962-40406981 | None:intergenic | 40.0% | |
| TAAGCTTAAAATGCAAGCCC+CGG | + | chr5_3:40407051-40407070 | None:intergenic | 40.0% | |
| ! | ATCGTGTTTTCTTTGCATCC+AGG | - | chr5_3:40407278-40407297 | Msa0811280:intron | 40.0% |
| !!! | CATTTTGAAGTGGCATAGGA+TGG | - | chr5_3:40407444-40407463 | Msa0811280:intron | 40.0% |
| ! | TAGGATGGTAGATTTTACGG+TGG | - | chr5_3:40407459-40407478 | Msa0811280:intron | 40.0% |
| ! | AGGATGGTAGATTTTACGGT+GGG | - | chr5_3:40407460-40407479 | Msa0811280:intron | 40.0% |
| GACCAGGTTCTCAATAGTAT+AGG | + | chr5_3:40407586-40407605 | None:intergenic | 40.0% | |
| CCTCCACAATTAAAAAGACC+AGG | + | chr5_3:40407602-40407621 | None:intergenic | 40.0% | |
| !! | CCTGGTCTTTTTAATTGTGG+AGG | - | chr5_3:40407599-40407618 | Msa0811280:intron | 40.0% |
| ACCAAGGACACCAATCAAAA+GGG | + | chr5_3:40407703-40407722 | None:intergenic | 40.0% | |
| AACCAAGGACACCAATCAAA+AGG | + | chr5_3:40407704-40407723 | None:intergenic | 40.0% | |
| ACTAGTTGACCGAGAATTTG+AGG | - | chr5_3:40407817-40407836 | Msa0811280:intron | 40.0% | |
| ! | CATACCAGAACTCTTTTGAC+AGG | + | chr5_3:40407865-40407884 | None:intergenic | 40.0% |
| GGGAATGTTGTTCTTTGACT+AGG | + | chr5_3:40408049-40408068 | None:intergenic | 40.0% | |
| ACAACATTCCCCATGTATCT+TGG | - | chr5_3:40408058-40408077 | Msa0811280:intron | 40.0% | |
| TCATGCATCCAAGATACATG+GGG | + | chr5_3:40408069-40408088 | None:intergenic | 40.0% | |
| ATAATGCCTTGTGACATGCT+TGG | - | chr5_3:40408134-40408153 | Msa0811280:intron | 40.0% | |
| ! | GCATCAAGTTTTCTCTTCAG+TGG | - | chr5_3:40408631-40408650 | Msa0811280:intron | 40.0% |
| ! | CAAGTTTTCTCTTCAGTGGA+AGG | - | chr5_3:40408635-40408654 | Msa0811280:intron | 40.0% |
| CAAAATCAACCCCAATGATG+CGG | - | chr5_3:40408730-40408749 | Msa0811280:CDS | 40.0% | |
| TCCAATGCAATGAAGGAACA+GGG | + | chr5_3:40408935-40408954 | None:intergenic | 40.0% | |
| TTCCAATGCAATGAAGGAAC+AGG | + | chr5_3:40408936-40408955 | None:intergenic | 40.0% | |
| AGCTAGTGGTGTATAATGTC+TGG | - | chr5_3:40409256-40409275 | Msa0811280:intron | 40.0% | |
| ACCAAGACCATTGTCAAAAG+GGG | + | chr5_3:40409536-40409555 | None:intergenic | 40.0% | |
| GACCAAGACCATTGTCAAAA+GGG | + | chr5_3:40409537-40409556 | None:intergenic | 40.0% | |
| AGACCAAGACCATTGTCAAA+AGG | + | chr5_3:40409538-40409557 | None:intergenic | 40.0% | |
| ! | ATGGTCTTGGTCTATTCTAC+AGG | - | chr5_3:40409545-40409564 | Msa0811280:intron | 40.0% |
| ! | TGGTCTTGGTCTATTCTACA+GGG | - | chr5_3:40409546-40409565 | Msa0811280:intron | 40.0% |
| ATTCCTGATGTCTCTTGGAA+AGG | + | chr5_3:40409584-40409603 | None:intergenic | 40.0% | |
| GAAAGAAATACCTGCTCAAC+AGG | + | chr5_3:40409618-40409637 | None:intergenic | 40.0% | |
| GTTGTAGATGGTTGCTCAAT+AGG | + | chr5_3:40409943-40409962 | None:intergenic | 40.0% | |
| TTTGTGTTTGCGAAAGCGAG+GGG | + | chr5_3:40405407-40405426 | None:intergenic | 45.0% | |
| !! | TGAGAGTGTTCGTACATTGG+TGG | + | chr5_3:40405509-40405528 | None:intergenic | 45.0% |
| !! | GGTTGAGAGTGTTCGTACAT+TGG | + | chr5_3:40405512-40405531 | None:intergenic | 45.0% |
| ! | TCCAACTCCGATGCTGTTTA+CGG | - | chr5_3:40405644-40405663 | Msa0811280:three_prime_UTR | 45.0% |
| GGTGCCTCAACAAAGTTTGA+GGG | - | chr5_3:40406048-40406067 | Msa0811280:intron | 45.0% | |
| ACCACCCTCAAACTTTGTTG+AGG | + | chr5_3:40406055-40406074 | None:intergenic | 45.0% | |
| GCATTTAGCAAGCCACAGAT+CGG | + | chr5_3:40406231-40406250 | None:intergenic | 45.0% | |
| !! | GGCTTGCTAAATGCTAGCTT+AGG | - | chr5_3:40406237-40406256 | Msa0811280:intron | 45.0% |
| !! | CCAAATATCGGTTTCCGACA+CGG | - | chr5_3:40406450-40406469 | Msa0811280:intron | 45.0% |
| ATACTGTCCCGGTACATATC+AGG | + | chr5_3:40406482-40406501 | None:intergenic | 45.0% | |
| !! | GGTTTTGGTGCAGGAATCAA+TGG | - | chr5_3:40406884-40406903 | Msa0811280:intron | 45.0% |
| TACGTCAAGAAGTTGCACTC+AGG | - | chr5_3:40407009-40407028 | Msa0811280:intron | 45.0% | |
| AGGTCCGATAACTATCCTAC+CGG | - | chr5_3:40407029-40407048 | Msa0811280:intron | 45.0% | |
| ! | TCTGTTAGCAAGCTGGTCTA+CGG | - | chr5_3:40407236-40407255 | Msa0811280:CDS | 45.0% |
| GTTGGCATTTAGGCTTGACT+TGG | - | chr5_3:40407352-40407371 | Msa0811280:intron | 45.0% | |
| TCAAGACAGACCATATGTGC+TGG | - | chr5_3:40407386-40407405 | Msa0811280:intron | 45.0% | |
| CTGTGATAGACCAGCACATA+TGG | + | chr5_3:40407399-40407418 | None:intergenic | 45.0% | |
| ! | ATGGTAGATTTTACGGTGGG+CGG | - | chr5_3:40407463-40407482 | Msa0811280:intron | 45.0% |
| GTTGCCTGTCAAAAGAGTTC+TGG | - | chr5_3:40407858-40407877 | Msa0811280:intron | 45.0% | |
| GTTCTTTGACTAGGGGAAGA+AGG | + | chr5_3:40408040-40408059 | None:intergenic | 45.0% | |
| CATACACCAAGCATGTCACA+AGG | + | chr5_3:40408143-40408162 | None:intergenic | 45.0% | |
| ATGTAGGATGCAGCGAAAGA+AGG | - | chr5_3:40408412-40408431 | Msa0811280:intron | 45.0% | |
| TGTAGGATGCAGCGAAAGAA+GGG | - | chr5_3:40408413-40408432 | Msa0811280:intron | 45.0% | |
| CAAGATGGGTCCAATAGTTG+TGG | - | chr5_3:40408458-40408477 | Msa0811280:intron | 45.0% | |
| CTGGTCTGTACCACAACTAT+TGG | + | chr5_3:40408471-40408490 | None:intergenic | 45.0% | |
| CAATAGTTGTGGTACAGACC+AGG | - | chr5_3:40408469-40408488 | Msa0811280:intron | 45.0% | |
| ! | TCACGAGATTTCTGATGGAC+TGG | + | chr5_3:40408510-40408529 | None:intergenic | 45.0% |
| CAAGCTCACGAGATTTCTGA+TGG | + | chr5_3:40408515-40408534 | None:intergenic | 45.0% | |
| ! | CAAGCATTGCAAAGTGACCT+TGG | + | chr5_3:40408771-40408790 | None:intergenic | 45.0% |
| ! | AGGTCACTTTGCAATGCTTG+TGG | - | chr5_3:40408771-40408790 | Msa0811280:CDS | 45.0% |
| ! | GGTCACTTTGCAATGCTTGT+GGG | - | chr5_3:40408772-40408791 | Msa0811280:CDS | 45.0% |
| ! | CAATGCTTGTGGGCTTTTCT+GGG | - | chr5_3:40408782-40408801 | Msa0811280:CDS | 45.0% |
| ! | TGGGCTTTTCTGGGCAAATA+GGG | - | chr5_3:40408791-40408810 | Msa0811280:CDS | 45.0% |
| ! | CTTTTCTGGGCAAATAGGGT+AGG | - | chr5_3:40408795-40408814 | Msa0811280:CDS | 45.0% |
| TGCAATGAAGGAACAGGGAA+GGG | + | chr5_3:40408930-40408949 | None:intergenic | 45.0% | |
| ATGCAATGAAGGAACAGGGA+AGG | + | chr5_3:40408931-40408950 | None:intergenic | 45.0% | |
| TCCCTGTTCCTTCATTGCAT+TGG | - | chr5_3:40408931-40408950 | Msa0811280:intron | 45.0% | |
| TGGTGTATAATGTCTGGCAC+TGG | - | chr5_3:40409262-40409281 | Msa0811280:intron | 45.0% | |
| ! | ACAGTTCCCCCTTTTGACAA+TGG | - | chr5_3:40409526-40409545 | Msa0811280:intron | 45.0% |
| CCAAGACCATTGTCAAAAGG+GGG | + | chr5_3:40409535-40409554 | None:intergenic | 45.0% | |
| AGACCTTTCCAAGAGACATC+AGG | - | chr5_3:40409578-40409597 | Msa0811280:intron | 45.0% | |
| ATCTACTGTACCTGTTGAGC+AGG | - | chr5_3:40409605-40409624 | Msa0811280:intron | 45.0% | |
| !!! | GGAAATAGGTTGTTTTGGGC+TGG | - | chr5_3:40409685-40409704 | Msa0811280:CDS | 45.0% |
| !! | TGCGATGACTAGGTTGATCA+AGG | - | chr5_3:40409868-40409887 | Msa0811280:intron | 45.0% |
| CAAGGTAACAACTCAGACTG+TGG | - | chr5_3:40409886-40409905 | Msa0811280:intron | 45.0% | |
| TAGGAGTGATGTTGTGTGCA+GGG | + | chr5_3:40409924-40409943 | None:intergenic | 45.0% | |
| ATAGGAGTGATGTTGTGTGC+AGG | + | chr5_3:40409925-40409944 | None:intergenic | 45.0% | |
| TTGGATGCACAGCTGTCTAT+TGG | - | chr5_3:40409995-40410014 | Msa0811280:CDS | 45.0% | |
| !!! | TTATTTTTTTTTAAATAGAT+TGG | - | chr5_3:40406521-40406540 | Msa0811280:intron | 5.0% |
| !!! | AATTTTTTATTAAAGTATTT+TGG | - | chr5_3:40406739-40406758 | Msa0811280:intron | 5.0% |
| ! | GAAGAGAGTGCAGAAGGTGT+AGG | + | chr5_3:40405384-40405403 | None:intergenic | 50.0% |
| TTGTGTTTGCGAAAGCGAGG+GGG | + | chr5_3:40405406-40405425 | None:intergenic | 50.0% | |
| !! | TTGATGTTGAGCGTCGATGC+CGG | + | chr5_3:40405594-40405613 | None:intergenic | 50.0% |
| TCAGTACGTAACGCACGGTA+TGG | - | chr5_3:40405616-40405635 | Msa0811280:three_prime_UTR | 50.0% | |
| ! | TCCGATGCTGTTTACGGCAA+CGG | - | chr5_3:40405650-40405669 | Msa0811280:three_prime_UTR | 50.0% |
| TGACTCTGTTACGCCTGCTA+AGG | - | chr5_3:40405757-40405776 | Msa0811280:CDS | 50.0% | |
| !! | TCGGTGTTGTTACTGTTGGG+TGG | - | chr5_3:40405995-40406014 | Msa0811280:intron | 50.0% |
| GGATGTGAACAACCTGATGC+TGG | - | chr5_3:40406016-40406035 | Msa0811280:intron | 50.0% | |
| ACCTGATGCTGGTGTGAATG+CGG | - | chr5_3:40406027-40406046 | Msa0811280:intron | 50.0% | |
| CGGTGCCTCAACAAAGTTTG+AGG | - | chr5_3:40406047-40406066 | Msa0811280:intron | 50.0% | |
| GCCTCAACAAAGTTTGAGGG+TGG | - | chr5_3:40406051-40406070 | Msa0811280:intron | 50.0% | |
| CCGTGTCGGAAACCGATATT+TGG | + | chr5_3:40406453-40406472 | None:intergenic | 50.0% | |
| CTGCCGGAACCTAAGTAATG+AGG | + | chr5_3:40406946-40406965 | None:intergenic | 50.0% | |
| TACTTAGGTTCCGGCAGAAG+AGG | - | chr5_3:40406949-40406968 | Msa0811280:CDS | 50.0% | |
| GGTCCGATAACTATCCTACC+GGG | - | chr5_3:40407030-40407049 | Msa0811280:intron | 50.0% | |
| GTCCGATAACTATCCTACCG+GGG | - | chr5_3:40407031-40407050 | Msa0811280:intron | 50.0% | |
| AGCCCCGGTAGGATAGTTAT+CGG | + | chr5_3:40407036-40407055 | None:intergenic | 50.0% | |
| CTTAAAATGCAAGCCCCGGT+AGG | + | chr5_3:40407047-40407066 | None:intergenic | 50.0% | |
| ! | CTGTTAGCAAGCTGGTCTAC+GGG | - | chr5_3:40407237-40407256 | Msa0811280:CDS | 50.0% |
| ! | TGGTAGATTTTACGGTGGGC+GGG | - | chr5_3:40407464-40407483 | Msa0811280:intron | 50.0% |
| !! | GCCCTTTTGATTGGTGTCCT+TGG | - | chr5_3:40407699-40407718 | Msa0811280:intron | 50.0% |
| TACAGACCAGGATTCTAGCC+AGG | - | chr5_3:40408481-40408500 | Msa0811280:intron | 50.0% | |
| !! | TTTCTGATGGACTGGCATCC+TGG | + | chr5_3:40408502-40408521 | None:intergenic | 50.0% |
| CAAAGTGACCTTGGACCAGA+TGG | + | chr5_3:40408762-40408781 | None:intergenic | 50.0% | |
| ! | GCAATGCTTGTGGGCTTTTC+TGG | - | chr5_3:40408781-40408800 | Msa0811280:CDS | 50.0% |
| ! | GTGGGCTTTTCTGGGCAAAT+AGG | - | chr5_3:40408790-40408809 | Msa0811280:CDS | 50.0% |
| AGGGTAGGTGTTCTCTCCAA+AGG | - | chr5_3:40408810-40408829 | Msa0811280:intron | 50.0% | |
| ! | CCCCCTTTTGACAATGGTCT+TGG | - | chr5_3:40409532-40409551 | Msa0811280:intron | 50.0% |
| ACCACAGTACCAATCACCGC+CGG | - | chr5_3:40405539-40405558 | Msa0811280:three_prime_UTR | 55.0% | |
| ! | GCCGTAAACAGCATCGGAGT+TGG | + | chr5_3:40405648-40405667 | None:intergenic | 55.0% |
| GCCGTTGCCGTAAACAGCAT+CGG | + | chr5_3:40405654-40405673 | None:intergenic | 55.0% | |
| ! | GATGCTGTTTACGGCAACGG+CGG | - | chr5_3:40405653-40405672 | Msa0811280:three_prime_UTR | 55.0% |
| ! | CAGCTTACGCTGTCGTTTCG+TGG | - | chr5_3:40405719-40405738 | Msa0811280:three_prime_UTR | 55.0% |
| ACCGCATTCACACCAGCATC+AGG | + | chr5_3:40406031-40406050 | None:intergenic | 55.0% | |
| CTATCATGGGCAGCCGTATC+CGG | + | chr5_3:40406579-40406598 | None:intergenic | 55.0% | |
| TCCTGCTGACAAGTCCTCGT+AGG | - | chr5_3:40407887-40407906 | Msa0811280:intron | 55.0% | |
| CCTGCTGACAAGTCCTCGTA+GGG | - | chr5_3:40407888-40407907 | Msa0811280:intron | 55.0% | |
| TGACAAGTCCTCGTAGGGCA+CGG | - | chr5_3:40407893-40407912 | Msa0811280:intron | 55.0% | |
| TTCTTAGTCCGTGCCCTACG+AGG | + | chr5_3:40407904-40407923 | None:intergenic | 55.0% | |
| TGGCATCCTGGCTAGAATCC+TGG | + | chr5_3:40408490-40408509 | None:intergenic | 55.0% | |
| ! | GAGGGGGAAGAGAGTGCAGA+AGG | + | chr5_3:40405390-40405409 | None:intergenic | 60.0% |
| !! | GGCTTGGTGTGGGAGAGTTC+AGG | - | chr5_3:40406294-40406313 | Msa0811280:intron | 60.0% |
| GGTGTGGGAGAGTTCAGGAG+TGG | - | chr5_3:40406299-40406318 | Msa0811280:intron | 60.0% | |
| CCCTACGAGGACTTGTCAGC+AGG | + | chr5_3:40407891-40407910 | None:intergenic | 60.0% | |
| TCAACCCCAATGATGCGGCG+AGG | - | chr5_3:40408735-40408754 | Msa0811280:CDS | 60.0% | |
| CAACCCCAATGATGCGGCGA+GGG | - | chr5_3:40408736-40408755 | Msa0811280:CDS | 60.0% | |
| ATGGCCCTCGCCGCATCATT+GGG | + | chr5_3:40408743-40408762 | None:intergenic | 60.0% | |
| GCCGGCGGTGATTGGTACTG+TGG | + | chr5_3:40405543-40405562 | None:intergenic | 65.0% | |
| TCGCTTTCGCCGGCGGTGAT+TGG | + | chr5_3:40405551-40405570 | None:intergenic | 65.0% | |
| ! | GGAACCGTCGTCGCTTTCGC+CGG | + | chr5_3:40405561-40405580 | None:intergenic | 65.0% |
| GGCGAAAGCGACGACGGTTC+CGG | - | chr5_3:40405560-40405579 | Msa0811280:three_prime_UTR | 65.0% | |
| !! | TTGAGCGTCGATGCCGGCGT+CGG | + | chr5_3:40405588-40405607 | None:intergenic | 65.0% |
| TGGCCCTCGCCGCATCATTG+GGG | + | chr5_3:40408742-40408761 | None:intergenic | 65.0% | |
| GATGGCCCTCGCCGCATCAT+TGG | + | chr5_3:40408744-40408763 | None:intergenic | 65.0% | |
| ATGATGCGGCGAGGGCCATC+TGG | - | chr5_3:40408744-40408763 | Msa0811280:CDS | 65.0% | |
| ACCGCCGGCGAAAGCGACGA+CGG | - | chr5_3:40405554-40405573 | Msa0811280:three_prime_UTR | 70.0% | |
| ! | ACCGTCGTCGCTTTCGCCGG+CGG | + | chr5_3:40405558-40405577 | None:intergenic | 70.0% |
| !! | TGAGCGTCGATGCCGGCGTC+GGG | + | chr5_3:40405587-40405606 | None:intergenic | 70.0% |
| GGCGAGGGCCATCTGGTCCA+AGG | - | chr5_3:40408751-40408770 | Msa0811280:CDS | 70.0% | |
| GACGGTTCCGGTCCCGACGC+CGG | - | chr5_3:40405572-40405591 | Msa0811280:three_prime_UTR | 75.0% | |
| ! | GTCGATGCCGGCGTCGGGAC+CGG | + | chr5_3:40405582-40405601 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 40405374 | 40410338 | 40405374 | ID=Msa0811280;Name=Msa0811280 |
| chr5_3 | mRNA | 40405374 | 40410338 | 40405374 | ID=Msa0811280-mRNA-1;Parent=Msa0811280;Name=Msa0811280-mRNA-1;_AED=0.04;_eAED=0.04;_QI=126|1|1|1|0.85|0.75|8|305|287 |
| chr5_3 | exon | 40405374 | 40405416 | 40405374 | ID=Msa0811280-mRNA-1:exon:12437;Parent=Msa0811280-mRNA-1 |
| chr5_3 | exon | 40405478 | 40405832 | 40405478 | ID=Msa0811280-mRNA-1:exon:12436;Parent=Msa0811280-mRNA-1 |
| chr5_3 | exon | 40406086 | 40406145 | 40406086 | ID=Msa0811280-mRNA-1:exon:12435;Parent=Msa0811280-mRNA-1 |
| chr5_3 | exon | 40406900 | 40407005 | 40406900 | ID=Msa0811280-mRNA-1:exon:12434;Parent=Msa0811280-mRNA-1 |
| chr5_3 | exon | 40407187 | 40407294 | 40407187 | ID=Msa0811280-mRNA-1:exon:12433;Parent=Msa0811280-mRNA-1 |
| chr5_3 | exon | 40408682 | 40408815 | 40408682 | ID=Msa0811280-mRNA-1:exon:12432;Parent=Msa0811280-mRNA-1 |
| chr5_3 | exon | 40409640 | 40409723 | 40409640 | ID=Msa0811280-mRNA-1:exon:12431;Parent=Msa0811280-mRNA-1 |
| chr5_3 | exon | 40409934 | 40410338 | 40409934 | ID=Msa0811280-mRNA-1:exon:12430;Parent=Msa0811280-mRNA-1 |
| chr5_3 | five_prime_UTR | 40410213 | 40410338 | 40410213 | ID=Msa0811280-mRNA-1:five_prime_utr;Parent=Msa0811280-mRNA-1 |
| chr5_3 | CDS | 40409934 | 40410212 | 40409934 | ID=Msa0811280-mRNA-1:cds;Parent=Msa0811280-mRNA-1 |
| chr5_3 | CDS | 40409640 | 40409723 | 40409640 | ID=Msa0811280-mRNA-1:cds;Parent=Msa0811280-mRNA-1 |
| chr5_3 | CDS | 40408682 | 40408815 | 40408682 | ID=Msa0811280-mRNA-1:cds;Parent=Msa0811280-mRNA-1 |
| chr5_3 | CDS | 40407187 | 40407294 | 40407187 | ID=Msa0811280-mRNA-1:cds;Parent=Msa0811280-mRNA-1 |
| chr5_3 | CDS | 40406900 | 40407005 | 40406900 | ID=Msa0811280-mRNA-1:cds;Parent=Msa0811280-mRNA-1 |
| chr5_3 | CDS | 40406086 | 40406145 | 40406086 | ID=Msa0811280-mRNA-1:cds;Parent=Msa0811280-mRNA-1 |
| chr5_3 | CDS | 40405740 | 40405832 | 40405740 | ID=Msa0811280-mRNA-1:cds;Parent=Msa0811280-mRNA-1 |
| chr5_3 | three_prime_UTR | 40405478 | 40405739 | 40405478 | ID=Msa0811280-mRNA-1:three_prime_utr;Parent=Msa0811280-mRNA-1 |
| chr5_3 | three_prime_UTR | 40405374 | 40405416 | 40405374 | ID=Msa0811280-mRNA-1:three_prime_utr;Parent=Msa0811280-mRNA-1 |
| Gene Sequence |
| Protein sequence |
