AlfalfaGEDB | Msa0851380

M. sativa cultivar zhongmu-4 / Msa0851380

KEGG: -
GO: GO:0000976 GO:0000977 GO:0000981 GO:0001012 GO:0001067 GO:0001085 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005667 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141
PFAM: PF06200.17

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0851380	XP_003615317.1	96.864	287	8	1	1	287	1	286	0.0	578

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0851380	sp\|Q9LRH6\|GAT25_ARATH	58.586	198	80	1	72	267	81	278	5.40e-73	229

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0851380	G7JYF5	96.864	287	8	1	1	287	1	286	0.0	578

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TFs/TRs:

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Gene ID	Type	Classification
Msa0851380	TF	C2C2-GATA

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0811280	Msa0851380	0.922119	1.487396e-88	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0851380	MtrunA17_Chr5g0427661	96.864	287	8	1	1	287	1	286	0.0	578
Msa0851380	MtrunA17_Chr3g0132761	60.465	258	71	8	46	275	42	296	4.05e-93	278
Msa0851380	MtrunA17_Chr3g0132751	54.595	185	76	5	74	252	69	251	2.23e-57	187
Msa0851380	MtrunA17_Chr4g0049741	51.208	207	80	8	53	245	20	219	2.60e-56	184
Msa0851380	MtrunA17_Chr4g0002231	56.701	97	28	4	152	237	42	135	1.87e-26	101
Msa0851380	MtrunA17_Chr3g0102511	39.216	102	57	3	159	259	4	101	4.26e-15	75.1
Msa0851380	MtrunA17_Chr4g0002261	68.627	51	15	1	127	176	16	66	6.98e-15	68.2
Msa0851380	MtrunA17_Chr4g0002251	67.500	40	13	0	199	238	5	44	2.58e-13	63.9
Msa0851380	MtrunA17_Chr4g0061021	52.459	61	27	1	135	195	505	563	2.60e-11	63.9

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0851380	AT4G24470.1	58.586	198	80	1	72	267	81	278	5.48e-74	229
Msa0851380	AT4G24470.2	58.586	198	80	1	72	267	81	278	5.48e-74	229
Msa0851380	AT4G24470.3	62.778	180	65	1	72	249	81	260	1.47e-73	228
Msa0851380	AT1G51600.1	59.893	187	64	4	70	245	79	265	1.08e-68	215
Msa0851380	AT1G51600.2	59.893	187	64	4	70	245	79	265	1.08e-68	215
Msa0851380	AT3G21175.1	57.426	202	74	5	56	245	60	261	1.19e-67	213
Msa0851380	AT3G21175.2	57.711	201	73	5	56	245	60	259	9.53e-67	210
Msa0851380	AT3G21175.3	55.245	143	59	4	56	194	60	201	2.04e-37	132
Msa0851380	AT2G46670.1	50.909	55	27	0	129	183	126	180	3.79e-11	61.2
Msa0851380	AT2G46790.5	50.909	55	27	0	129	183	254	308	7.00e-11	62.4

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Find 98 sgRNAs with CRISPR-Local

Find 321 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCTCTACAACAAATTA+GGG	0.317019	5_4:+41663294	Msa0851380:five_prime_UTR
AAACTTTGAAGTGCAAATTC+AGG	0.278085	5_4:-41663534	None:intergenic
AAATATATCAAAATACATTG+GGG	0.655044	5_4:-41667940	None:intergenic
AAATCTAGATGAAATTACAT+GGG	0.649762	5_4:+41667971	Msa0851380:three_prime_UTR
AAATTCTCTCTTTGGTGCAA+TGG	0.471067	5_4:+41663332	Msa0851380:exon
AAGCCTCATTACTTAGGTTC+CGG	0.424048	5_4:+41664791	Msa0851380:CDS
ACCACAGTACCAATCACCGC+CGG	0.655305	5_4:+41663390	Msa0851380:CDS
ACCACCCTCAAACTTTGTTG+AGG	0.626395	5_4:-41663903	None:intergenic
ACCGCATTCACACCAGCATC+AGG	0.496179	5_4:-41663879	None:intergenic
ACCGCCGGCGAAAGCGACGA+CGG	0.634534	5_4:+41663405	Msa0851380:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CAAAACCTCTACAACAAATT+AGG	+	chr5_4:41663293-41663312	Msa0851380:five_prime_UTR	30.0%
TTTCATGTTACAGGTTCAAT+CGG	+	chr5_4:41663827-41663846	Msa0851380:intron	30.0%
ATTTACCAATTCCTATGTTG+AGG	-	chr5_4:41664194-41664213	None:intergenic	30.0%
TTAATTGTTTGATACTGTCC+CGG	-	chr5_4:41664344-41664363	None:intergenic	30.0%
CATAAGTACTACTACTATCA+TGG	-	chr5_4:41664444-41664463	None:intergenic	30.0%
TACTTGACATGATAAGGATA+CGG	-	chr5_4:41664649-41664668	None:intergenic	30.0%
CATGTATACTTGACATGATA+AGG	-	chr5_4:41664655-41664674	None:intergenic	30.0%
TTCATCATGCAAATGATGAT+TGG	+	chr5_4:41664948-41664967	Msa0851380:intron	30.0%
TCATCATGCAAATGATGATT+GGG	+	chr5_4:41664949-41664968	Msa0851380:intron	30.0%
AAAGAAAACACGATCATACT+GGG	-	chr5_4:41665123-41665142	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_4	gene	41663225	41668189	41663225	ID=Msa0851380;Name=Msa0851380
chr5_4	mRNA	41663225	41668189	41663225	ID=Msa0851380-mRNA-1;Parent=Msa0851380;Name=Msa0851380-mRNA-1;_AED=0.04;_eAED=0.04;_QI=126\|1\|1\|1\|0.85\|0.75\|8\|305\|287
chr5_4	exon	41663225	41663629	41663225	ID=Msa0851380-mRNA-1:exon:13156;Parent=Msa0851380-mRNA-1
chr5_4	exon	41663840	41663923	41663840	ID=Msa0851380-mRNA-1:exon:13157;Parent=Msa0851380-mRNA-1
chr5_4	exon	41664748	41664881	41664748	ID=Msa0851380-mRNA-1:exon:13158;Parent=Msa0851380-mRNA-1
chr5_4	exon	41666269	41666376	41666269	ID=Msa0851380-mRNA-1:exon:13159;Parent=Msa0851380-mRNA-1
chr5_4	exon	41666558	41666663	41666558	ID=Msa0851380-mRNA-1:exon:13160;Parent=Msa0851380-mRNA-1
chr5_4	exon	41667418	41667477	41667418	ID=Msa0851380-mRNA-1:exon:13161;Parent=Msa0851380-mRNA-1
chr5_4	exon	41667731	41668085	41667731	ID=Msa0851380-mRNA-1:exon:13162;Parent=Msa0851380-mRNA-1
chr5_4	exon	41668147	41668189	41668147	ID=Msa0851380-mRNA-1:exon:13163;Parent=Msa0851380-mRNA-1
chr5_4	five_prime_UTR	41663225	41663350	41663225	ID=Msa0851380-mRNA-1:five_prime_utr;Parent=Msa0851380-mRNA-1
chr5_4	CDS	41663351	41663629	41663351	ID=Msa0851380-mRNA-1:cds;Parent=Msa0851380-mRNA-1
chr5_4	CDS	41663840	41663923	41663840	ID=Msa0851380-mRNA-1:cds;Parent=Msa0851380-mRNA-1
chr5_4	CDS	41664748	41664881	41664748	ID=Msa0851380-mRNA-1:cds;Parent=Msa0851380-mRNA-1
chr5_4	CDS	41666269	41666376	41666269	ID=Msa0851380-mRNA-1:cds;Parent=Msa0851380-mRNA-1
chr5_4	CDS	41666558	41666663	41666558	ID=Msa0851380-mRNA-1:cds;Parent=Msa0851380-mRNA-1
chr5_4	CDS	41667418	41667477	41667418	ID=Msa0851380-mRNA-1:cds;Parent=Msa0851380-mRNA-1
chr5_4	CDS	41667731	41667823	41667731	ID=Msa0851380-mRNA-1:cds;Parent=Msa0851380-mRNA-1
chr5_4	three_prime_UTR	41667824	41668085	41667824	ID=Msa0851380-mRNA-1:three_prime_utr;Parent=Msa0851380-mRNA-1
chr5_4	three_prime_UTR	41668147	41668189	41668147	ID=Msa0851380-mRNA-1:three_prime_utr;Parent=Msa0851380-mRNA-1

Gene Sequence

>Msa0851380

ATGGAACCACCAATGTACGAACACTCTCAACCTTTGAACACCACAGTACCAATCACCGCCGGCGAAAGCGACGACGGTTCCGGTCCCGACGCCGGCATCGACGCTCAACATCAAATTCAGTACGTAACGCACGGTATGGATGATTCCAACTCCGATGCTGTTTACGGCAACGGCGGCGAAAATCCTGAATTTGCACTTCAAAGTTTTGATGAATCTGATCAGCTTACGCTGTCGTTTCGTGGTCAAGTTTATGTCTTTGACTCTGTTACGCCTGCTAAGGTTCAATCGGTGTTGTTACTGTTGGGTGGATGTGAACAACCTGATGCTGGTGTGAATGCGGTGCCTCAACAAAGTTTGAGGGTGGAATCAATGGATTTTCCTACAAAATATAGTCAATTACATCGAGAAGCCTCATTACTTAGGTTCCGGCAGAAGAGGAAAGAAAGATGCTTTGATAAGAAAGTTAGATATGAAGTACGTCAAGAAGTTGCACTCAGGATGCAGCGAAAGAAGGGTCAATTTACTACATCTAAGAAACAAGATGGGTCCAATAGTTGTGGTACAGACCAGGATTCTAGCCAGGATGCCAGTCCATCAGAAATCTCTTGCACACATTGTGGCACAAGCTCAAAATCAACCCCAATGATGCGGCGAGGGCCATCTGGTCCAAGGTCACTTTGCAATGCTTGTGGGCTTTTCTGGGCAAATAGGGGTGTCTTGAGAGACCTTTCCAAGAGACATCAGGAATTATCTACTGTACCTGTTGAGCAGGTTGATCAAGGTAACAACTCAGACTGTGGAACTACAACTATCCCTGCACACAACATCACTCCTATTGAGCAACCATCTACAACTATTTGCTAG

Protein sequence

>Msa0851380

MEPPMYEHSQPLNTTVPITAGESDDGSGPDAGIDAQHQIQYVTHGMDDSNSDAVYGNGGENPEFALQSFDESDQLTLSFRGQVYVFDSVTPAKVQSVLLLLGGCEQPDAGVNAVPQQSLRVESMDFPTKYSQLHREASLLRFRQKRKERCFDKKVRYEVRQEVALRMQRKKGQFTTSKKQDGSNSCGTDQDSSQDASPSEISCTHCGTSSKSTPMMRRGPSGPRSLCNACGLFWANRGVLRDLSKRHQELSTVPVEQVDQGNNSDCGTTTIPAHNITPIEQPSTTIC*