Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0851380 | XP_003615317.1 | 96.864 | 287 | 8 | 1 | 1 | 287 | 1 | 286 | 0.0 | 578 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0851380 | sp|Q9LRH6|GAT25_ARATH | 58.586 | 198 | 80 | 1 | 72 | 267 | 81 | 278 | 5.40e-73 | 229 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0851380 | G7JYF5 | 96.864 | 287 | 8 | 1 | 1 | 287 | 1 | 286 | 0.0 | 578 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0851380 | TF | C2C2-GATA |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0811280 | Msa0851380 | 0.922119 | 1.487396e-88 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0851380 | MtrunA17_Chr5g0427661 | 96.864 | 287 | 8 | 1 | 1 | 287 | 1 | 286 | 0.0 | 578 |
| Msa0851380 | MtrunA17_Chr3g0132761 | 60.465 | 258 | 71 | 8 | 46 | 275 | 42 | 296 | 4.05e-93 | 278 |
| Msa0851380 | MtrunA17_Chr3g0132751 | 54.595 | 185 | 76 | 5 | 74 | 252 | 69 | 251 | 2.23e-57 | 187 |
| Msa0851380 | MtrunA17_Chr4g0049741 | 51.208 | 207 | 80 | 8 | 53 | 245 | 20 | 219 | 2.60e-56 | 184 |
| Msa0851380 | MtrunA17_Chr4g0002231 | 56.701 | 97 | 28 | 4 | 152 | 237 | 42 | 135 | 1.87e-26 | 101 |
| Msa0851380 | MtrunA17_Chr3g0102511 | 39.216 | 102 | 57 | 3 | 159 | 259 | 4 | 101 | 4.26e-15 | 75.1 |
| Msa0851380 | MtrunA17_Chr4g0002261 | 68.627 | 51 | 15 | 1 | 127 | 176 | 16 | 66 | 6.98e-15 | 68.2 |
| Msa0851380 | MtrunA17_Chr4g0002251 | 67.500 | 40 | 13 | 0 | 199 | 238 | 5 | 44 | 2.58e-13 | 63.9 |
| Msa0851380 | MtrunA17_Chr4g0061021 | 52.459 | 61 | 27 | 1 | 135 | 195 | 505 | 563 | 2.60e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0851380 | AT4G24470.1 | 58.586 | 198 | 80 | 1 | 72 | 267 | 81 | 278 | 5.48e-74 | 229 |
| Msa0851380 | AT4G24470.2 | 58.586 | 198 | 80 | 1 | 72 | 267 | 81 | 278 | 5.48e-74 | 229 |
| Msa0851380 | AT4G24470.3 | 62.778 | 180 | 65 | 1 | 72 | 249 | 81 | 260 | 1.47e-73 | 228 |
| Msa0851380 | AT1G51600.1 | 59.893 | 187 | 64 | 4 | 70 | 245 | 79 | 265 | 1.08e-68 | 215 |
| Msa0851380 | AT1G51600.2 | 59.893 | 187 | 64 | 4 | 70 | 245 | 79 | 265 | 1.08e-68 | 215 |
| Msa0851380 | AT3G21175.1 | 57.426 | 202 | 74 | 5 | 56 | 245 | 60 | 261 | 1.19e-67 | 213 |
| Msa0851380 | AT3G21175.2 | 57.711 | 201 | 73 | 5 | 56 | 245 | 60 | 259 | 9.53e-67 | 210 |
| Msa0851380 | AT3G21175.3 | 55.245 | 143 | 59 | 4 | 56 | 194 | 60 | 201 | 2.04e-37 | 132 |
| Msa0851380 | AT2G46670.1 | 50.909 | 55 | 27 | 0 | 129 | 183 | 126 | 180 | 3.79e-11 | 61.2 |
| Msa0851380 | AT2G46790.5 | 50.909 | 55 | 27 | 0 | 129 | 183 | 254 | 308 | 7.00e-11 | 62.4 |
| Msa0851380 | AT2G46790.4 | 50.909 | 55 | 27 | 0 | 129 | 183 | 254 | 308 | 7.00e-11 | 62.4 |
| Msa0851380 | AT2G46790.1 | 50.909 | 55 | 27 | 0 | 129 | 183 | 411 | 465 | 7.33e-11 | 62.8 |
| Msa0851380 | AT2G46790.2 | 50.909 | 55 | 27 | 0 | 129 | 183 | 294 | 348 | 8.56e-11 | 62.4 |
Find 98 sgRNAs with CRISPR-Local
Find 321 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAAACCTCTACAACAAATT+AGG | 0.141320 | 5_4:+41663293 | Msa0851380:five_prime_UTR |
| CGCTTCTCAAATTCTCTCTT+TGG | 0.239601 | 5_4:+41663324 | Msa0851380:five_prime_UTR |
| AAACTTTGAAGTGCAAATTC+AGG | 0.278085 | 5_4:-41663534 | None:intergenic |
| ATGGCCCTCGCCGCATCATT+GGG | 0.283489 | 5_4:-41666591 | None:intergenic |
| TCCAACTCCGATGCTGTTTA+CGG | 0.309806 | 5_4:+41663495 | Msa0851380:CDS |
| AAAACCTCTACAACAAATTA+GGG | 0.317019 | 5_4:+41663294 | Msa0851380:five_prime_UTR |
| GATGGCCCTCGCCGCATCAT+TGG | 0.329482 | 5_4:-41666592 | None:intergenic |
| TTTCAACAACTTGACTAAAC+TGG | 0.331435 | 5_4:+41668157 | Msa0851380:three_prime_UTR |
| GTTGTAGATGGTTGCTCAAT+AGG | 0.337983 | 5_4:-41667791 | None:intergenic |
| TTGGATGCACAGCTGTCTAT+TGG | 0.341864 | 5_4:+41667846 | Msa0851380:three_prime_UTR |
| TCGCTTTCGCCGGCGGTGAT+TGG | 0.347965 | 5_4:-41663399 | None:intergenic |
| CTGGTCTGTACCACAACTAT+TGG | 0.364949 | 5_4:-41666319 | None:intergenic |
| TAAATATATCAAAATACATT+GGG | 0.372782 | 5_4:-41667941 | None:intergenic |
| ACTTGACTAAACTGGTAAAC+TGG | 0.374073 | 5_4:+41668165 | Msa0851380:three_prime_UTR |
| TATACTGGTACTTGTCTGTT+TGG | 0.380856 | 5_4:+41667827 | Msa0851380:three_prime_UTR |
| GAAAGAAATACCTGCTCAAC+AGG | 0.391041 | 5_4:-41667466 | None:intergenic |
| GGTCACTTTGCAATGCTTGT+GGG | 0.405446 | 5_4:+41666623 | Msa0851380:CDS |
| GGCGAAAGCGACGACGGTTC+CGG | 0.410307 | 5_4:+41663411 | Msa0851380:CDS |
| ACTATTTGCTAGTACTATAC+TGG | 0.413848 | 5_4:+41667812 | Msa0851380:exon |
| ATGATGCGGCGAGGGCCATC+TGG | 0.424046 | 5_4:+41666595 | Msa0851380:CDS |
| AAGCCTCATTACTTAGGTTC+CGG | 0.424048 | 5_4:+41664791 | Msa0851380:CDS |
| GTCGATGCCGGCGTCGGGAC+CGG | 0.425728 | 5_4:-41663430 | None:intergenic |
| CAGCTTACGCTGTCGTTTCG+TGG | 0.436824 | 5_4:+41663570 | Msa0851380:CDS |
| AGGTCACTTTGCAATGCTTG+TGG | 0.439332 | 5_4:+41666622 | Msa0851380:CDS |
| TTTCTGATGGACTGGCATCC+TGG | 0.442732 | 5_4:-41666350 | None:intergenic |
| TTGGGGAAAACAACAAAATC+AGG | 0.451746 | 5_4:-41667923 | None:intergenic |
| TCAATCGGTGTTGTTACTGT+TGG | 0.455881 | 5_4:+41663842 | Msa0851380:CDS |
| CAATCGGTGTTGTTACTGTT+GGG | 0.455920 | 5_4:+41663843 | Msa0851380:CDS |
| AGATAATTCCTGATGTCTCT+TGG | 0.456240 | 5_4:-41667437 | None:intergenic |
| ATCTTTCTTTCCTCTTCTGC+CGG | 0.458420 | 5_4:-41664810 | None:intergenic |
| ATGTAGGATGCAGCGAAAGA+AGG | 0.464044 | 5_4:+41666263 | Msa0851380:intron |
| TGAGCGTCGATGCCGGCGTC+GGG | 0.466145 | 5_4:-41663435 | None:intergenic |
| TACTAGCAAATAGTTGTAGA+TGG | 0.470683 | 5_4:-41667803 | None:intergenic |
| AAATTCTCTCTTTGGTGCAA+TGG | 0.471067 | 5_4:+41663332 | Msa0851380:exon |
| ATCTACTGTACCTGTTGAGC+AGG | 0.474916 | 5_4:+41667456 | Msa0851380:CDS |
| CGGTGCCTCAACAAAGTTTG+AGG | 0.475750 | 5_4:+41663898 | Msa0851380:CDS |
| ATTGAGAATCGAACCTTAGC+AGG | 0.477071 | 5_4:-41663621 | None:intergenic |
| CAAGCATTGCAAAGTGACCT+TGG | 0.478461 | 5_4:-41666619 | None:intergenic |
| GCCGTAAACAGCATCGGAGT+TGG | 0.479472 | 5_4:-41663496 | None:intergenic |
| TGTAGGATGCAGCGAAAGAA+GGG | 0.482115 | 5_4:+41666264 | Msa0851380:intron |
| ATCGAGAAGCCTCATTACTT+AGG | 0.494390 | 5_4:+41664785 | Msa0851380:CDS |
| TGGCATCCTGGCTAGAATCC+TGG | 0.494476 | 5_4:-41666338 | None:intergenic |
| TGACTCTGTTACGCCTGCTA+AGG | 0.495608 | 5_4:+41663608 | Msa0851380:CDS |
| CTAAATATATCAAAATACAT+TGG | 0.495996 | 5_4:-41667942 | None:intergenic |
| ACCGCATTCACACCAGCATC+AGG | 0.496179 | 5_4:-41663879 | None:intergenic |
| TCAGTACGTAACGCACGGTA+TGG | 0.497109 | 5_4:+41663467 | Msa0851380:CDS |
| TTTCATGTTACAGGTTCAAT+CGG | 0.502821 | 5_4:+41663827 | Msa0851380:intron |
| GGAACCGTCGTCGCTTTCGC+CGG | 0.503198 | 5_4:-41663409 | None:intergenic |
| TACTTAGGTTCCGGCAGAAG+AGG | 0.507196 | 5_4:+41664800 | Msa0851380:CDS |
| GACGGTTCCGGTCCCGACGC+CGG | 0.509123 | 5_4:+41663423 | Msa0851380:CDS |
| CAACCCCAATGATGCGGCGA+GGG | 0.509404 | 5_4:+41666587 | Msa0851380:CDS |
| ACTACATCTAAGAAACAAGA+TGG | 0.513677 | 5_4:+41666294 | Msa0851380:CDS |
| TCCGATGCTGTTTACGGCAA+CGG | 0.517634 | 5_4:+41663501 | Msa0851380:CDS |
| TTGAGCGTCGATGCCGGCGT+CGG | 0.518484 | 5_4:-41663436 | None:intergenic |
| ATTGGTACTGTGGTGTTCAA+AGG | 0.519474 | 5_4:-41663381 | None:intergenic |
| AGACCTTTCCAAGAGACATC+AGG | 0.523306 | 5_4:+41667429 | Msa0851380:CDS |
| TCACGAGATTTCTGATGGAC+TGG | 0.530433 | 5_4:-41666358 | None:intergenic |
| GAAACCCTAATTTGTTGTAG+AGG | 0.536285 | 5_4:-41663298 | None:intergenic |
| GGTTGAGAGTGTTCGTACAT+TGG | 0.539771 | 5_4:-41663360 | None:intergenic |
| ACCGTCGTCGCTTTCGCCGG+CGG | 0.540258 | 5_4:-41663406 | None:intergenic |
| TAAATCTAGATGAAATTACA+TGG | 0.543242 | 5_4:+41667970 | Msa0851380:three_prime_UTR |
| TGCGATGACTAGGTTGATCA+AGG | 0.549206 | 5_4:+41667719 | Msa0851380:intron |
| CAAAGTGACCTTGGACCAGA+TGG | 0.549647 | 5_4:-41666610 | None:intergenic |
| TGAGAGTGTTCGTACATTGG+TGG | 0.550890 | 5_4:-41663357 | None:intergenic |
| TTGATGTTGAGCGTCGATGC+CGG | 0.559465 | 5_4:-41663442 | None:intergenic |
| TACAGACCAGGATTCTAGCC+AGG | 0.560530 | 5_4:+41666332 | Msa0851380:CDS |
| CAAGCTCACGAGATTTCTGA+TGG | 0.565628 | 5_4:-41666363 | None:intergenic |
| CAATAGTTGTGGTACAGACC+AGG | 0.567890 | 5_4:+41666320 | Msa0851380:CDS |
| GGATGTGAACAACCTGATGC+TGG | 0.568670 | 5_4:+41663867 | Msa0851380:CDS |
| CTGCCGGAACCTAAGTAATG+AGG | 0.570375 | 5_4:-41664794 | None:intergenic |
| ATTCCTGATGTCTCTTGGAA+AGG | 0.575092 | 5_4:-41667432 | None:intergenic |
| GAAGAGAGTGCAGAAGGTGT+AGG | 0.575675 | 5_4:-41663232 | None:intergenic |
| GGTGCCTCAACAAAGTTTGA+GGG | 0.580121 | 5_4:+41663899 | Msa0851380:CDS |
| ATAGGAGTGATGTTGTGTGC+AGG | 0.580688 | 5_4:-41667773 | None:intergenic |
| GCCGTTGCCGTAAACAGCAT+CGG | 0.590158 | 5_4:-41663502 | None:intergenic |
| GGCGAGGGCCATCTGGTCCA+AGG | 0.590488 | 5_4:+41666602 | Msa0851380:CDS |
| CAAGATGGGTCCAATAGTTG+TGG | 0.595326 | 5_4:+41666309 | Msa0851380:CDS |
| TTAAATAGTTGCACACATTG+TGG | 0.601041 | 5_4:+41666550 | Msa0851380:intron |
| CAAGGTAACAACTCAGACTG+TGG | 0.601587 | 5_4:+41667737 | Msa0851380:CDS |
| CAAAATCAACCCCAATGATG+CGG | 0.615905 | 5_4:+41666581 | Msa0851380:CDS |
| TCGGTGTTGTTACTGTTGGG+TGG | 0.618046 | 5_4:+41663846 | Msa0851380:CDS |
| TACGTCAAGAAGTTGCACTC+AGG | 0.620095 | 5_4:+41664860 | Msa0851380:CDS |
| TTTGTGTTTGCGAAAGCGAG+GGG | 0.626213 | 5_4:-41663255 | None:intergenic |
| ACCACCCTCAAACTTTGTTG+AGG | 0.626395 | 5_4:-41663903 | None:intergenic |
| ACCGCCGGCGAAAGCGACGA+CGG | 0.634534 | 5_4:+41663405 | Msa0851380:CDS |
| TAGGAGTGATGTTGTGTGCA+GGG | 0.638031 | 5_4:-41667772 | None:intergenic |
| TGGCCCTCGCCGCATCATTG+GGG | 0.646878 | 5_4:-41666590 | None:intergenic |
| CTACATCTAAGAAACAAGAT+GGG | 0.649224 | 5_4:+41666295 | Msa0851380:CDS |
| AAATCTAGATGAAATTACAT+GGG | 0.649762 | 5_4:+41667971 | Msa0851380:three_prime_UTR |
| AAATATATCAAAATACATTG+GGG | 0.655044 | 5_4:-41667940 | None:intergenic |
| ACCACAGTACCAATCACCGC+CGG | 0.655305 | 5_4:+41663390 | Msa0851380:CDS |
| GCCTCAACAAAGTTTGAGGG+TGG | 0.655336 | 5_4:+41663902 | Msa0851380:CDS |
| GATGCTGTTTACGGCAACGG+CGG | 0.661829 | 5_4:+41663504 | Msa0851380:CDS |
| ACCTGATGCTGGTGTGAATG+CGG | 0.662406 | 5_4:+41663878 | Msa0851380:CDS |
| CAAATTCAGTACGTAACGCA+CGG | 0.665723 | 5_4:+41663462 | Msa0851380:CDS |
| TCAACCCCAATGATGCGGCG+AGG | 0.668347 | 5_4:+41666586 | Msa0851380:CDS |
| GCCGGCGGTGATTGGTACTG+TGG | 0.669157 | 5_4:-41663391 | None:intergenic |
| TTGTGTTTGCGAAAGCGAGG+GGG | 0.698518 | 5_4:-41663254 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGTTGAATTTTTTTATTATT+TGG | + | chr5_4:41663784-41663803 | Msa0851380:intron | 10.0% |
| !!! | GTTGAATTTTTTTATTATTT+GGG | + | chr5_4:41663785-41663804 | Msa0851380:intron | 10.0% |
| !!! | TTTATTTTATGTTTAAATGT+AGG | + | chr5_4:41666247-41666266 | Msa0851380:intron | 10.0% |
| !!! | TTTGATTAAAATTTGTTTAA+GGG | - | chr5_4:41667582-41667601 | None:intergenic | 10.0% |
| !!! | TTTTGATTAAAATTTGTTTA+AGG | - | chr5_4:41667583-41667602 | None:intergenic | 10.0% |
| !! | TAAATATATCAAAATACATT+GGG | - | chr5_4:41667944-41667963 | None:intergenic | 10.0% |
| !!! | TGTTTATTATTGATTTTTCT+TGG | + | chr5_4:41663674-41663693 | Msa0851380:intron | 15.0% |
| !! | CATTATTCATAAATCATAAT+AGG | + | chr5_4:41664251-41664270 | Msa0851380:intron | 15.0% |
| !!! | CTTAATCTTGTATTTTTTAA+TGG | + | chr5_4:41666119-41666138 | Msa0851380:intron | 15.0% |
| !! | AAAAAAAAAAAAAAAGCCTT+TGG | - | chr5_4:41666680-41666699 | None:intergenic | 15.0% |
| !! | ACATTTCAAAATATCTAAAA+TGG | - | chr5_4:41666994-41667013 | None:intergenic | 15.0% |
| !!! | TTTGGGAATATTAAAATTTT+GGG | + | chr5_4:41667151-41667170 | Msa0851380:intron | 15.0% |
| !! | AAATATATCAAAATACATTG+GGG | - | chr5_4:41667943-41667962 | None:intergenic | 15.0% |
| !! | CTAAATATATCAAAATACAT+TGG | - | chr5_4:41667945-41667964 | None:intergenic | 15.0% |
| !! | ATTTGAATATGCATTAGATT+TGG | + | chr5_4:41664014-41664033 | Msa0851380:intron | 20.0% |
| !! | TTTGAATATGCATTAGATTT+GGG | + | chr5_4:41664015-41664034 | Msa0851380:intron | 20.0% |
| !! | AAATTATATCTGATACGTAT+CGG | - | chr5_4:41664398-41664417 | None:intergenic | 20.0% |
| !! | AGTGGAAATTTATAATTCTT+TGG | + | chr5_4:41664713-41664732 | Msa0851380:intron | 20.0% |
| !! | GTGGAAATTTATAATTCTTT+GGG | + | chr5_4:41664714-41664733 | Msa0851380:intron | 20.0% |
| !!! | ATTTATAATTCTTTGGGTTT+TGG | + | chr5_4:41664720-41664739 | Msa0851380:intron | 20.0% |
| !!! | TGTAATTGACTATATTTTGT+AGG | - | chr5_4:41664766-41664785 | None:intergenic | 20.0% |
| !! | AAGAGAATAATATAACTGAA+TGG | + | chr5_4:41665052-41665071 | Msa0851380:intron | 20.0% |
| !! | AATCTGAAAATAATTGTAAG+AGG | - | chr5_4:41665158-41665177 | None:intergenic | 20.0% |
| !! | TATATTACATAGAATCATGT+TGG | + | chr5_4:41665185-41665204 | Msa0851380:intron | 20.0% |
| !! | TTTATCAACAAATTTAACAG+AGG | - | chr5_4:41665519-41665538 | None:intergenic | 20.0% |
| !!! | TTGTTTCTAAACTAAACAAT+AGG | - | chr5_4:41665812-41665831 | None:intergenic | 20.0% |
| !! | CTATGAGATATAAATTATTG+AGG | - | chr5_4:41665945-41665964 | None:intergenic | 20.0% |
| !!! | TATAAAAATGTATTGATGAG+AGG | - | chr5_4:41666096-41666115 | None:intergenic | 20.0% |
| !!! | TCTCATCAATACATTTTTAT+AGG | + | chr5_4:41666095-41666114 | Msa0851380:intron | 20.0% |
| !! | CATAAAATAAAGAGTGAAAT+TGG | - | chr5_4:41666238-41666257 | None:intergenic | 20.0% |
| !!! | TCGGAACAAAAAATATATTT+TGG | - | chr5_4:41666407-41666426 | None:intergenic | 20.0% |
| !!! | TTTTTTTGAAAATTTGTCTG+TGG | + | chr5_4:41666694-41666713 | Msa0851380:intron | 20.0% |
| !!! | TTTTTTGAAAATTTGTCTGT+GGG | + | chr5_4:41666695-41666714 | Msa0851380:intron | 20.0% |
| !!! | TTTGTTGTGAAACAAATTTA+TGG | - | chr5_4:41667076-41667095 | None:intergenic | 20.0% |
| !!! | GTTTGGGAATATTAAAATTT+TGG | + | chr5_4:41667150-41667169 | Msa0851380:intron | 20.0% |
| !! | CATCATAATCTATACTATAA+AGG | + | chr5_4:41667515-41667534 | Msa0851380:intron | 20.0% |
| !! | ATCTATACTATAAAGGAAAT+AGG | + | chr5_4:41667522-41667541 | Msa0851380:intron | 20.0% |
| !! | TAAATCTAGATGAAATTACA+TGG | + | chr5_4:41667970-41667989 | Msa0851380:three_prime_UTR | 20.0% |
| !! | AAATCTAGATGAAATTACAT+GGG | + | chr5_4:41667971-41667990 | Msa0851380:three_prime_UTR | 20.0% |
| !!! | TAGAGGTTTTGAGTTTAATT+GGG | - | chr5_4:41663284-41663303 | None:intergenic | 25.0% |
| ! | AAAACCTCTACAACAAATTA+GGG | + | chr5_4:41663294-41663313 | Msa0851380:five_prime_UTR | 25.0% |
| ! | TGGGATTGAAAATTTGTATT+TGG | + | chr5_4:41663804-41663823 | Msa0851380:intron | 25.0% |
| ! | ACATAGGAATTGGTAAATTA+TGG | + | chr5_4:41664196-41664215 | Msa0851380:intron | 25.0% |
| ! | CATAGGAATTGGTAAATTAT+GGG | + | chr5_4:41664197-41664216 | Msa0851380:intron | 25.0% |
| !!! | ATTTGGCAATTTTTGAGTAA+CGG | - | chr5_4:41664287-41664306 | None:intergenic | 25.0% |
| ! | ACTCAAAAATTGCCAAATAT+CGG | + | chr5_4:41664289-41664308 | Msa0851380:intron | 25.0% |
| !! | GATATAATTTTATTGTGCTC+CGG | + | chr5_4:41664408-41664427 | Msa0851380:intron | 25.0% |
| ! | ATAAGTACTACTACTATCAT+GGG | - | chr5_4:41664443-41664462 | None:intergenic | 25.0% |
| !! | AGTACTTATGATTTCCTTTT+TGG | + | chr5_4:41664454-41664473 | Msa0851380:intron | 25.0% |
| ! | ATACATGCTTCATAGATAAT+AGG | + | chr5_4:41664668-41664687 | Msa0851380:intron | 25.0% |
| ! | TATACAACAACAGATATTGA+TGG | + | chr5_4:41665375-41665394 | Msa0851380:intron | 25.0% |
| ! | ATACAACAACAGATATTGAT+GGG | + | chr5_4:41665376-41665395 | Msa0851380:intron | 25.0% |
| ! | TGAGAATCAAAATCATTTGA+AGG | - | chr5_4:41665633-41665652 | None:intergenic | 25.0% |
| ! | TTTATATCTCATAGAGTGAA+AGG | + | chr5_4:41665951-41665970 | Msa0851380:intron | 25.0% |
| !!! | TTTAATGGACTAAAAACTGA+TGG | + | chr5_4:41666134-41666153 | Msa0851380:intron | 25.0% |
| !!! | GATGCATTGTTATTTCATAT+TGG | - | chr5_4:41666467-41666486 | None:intergenic | 25.0% |
| ! | TTTAACCACCATTCTTTAAA+TGG | + | chr5_4:41666522-41666541 | Msa0851380:intron | 25.0% |
| !! | TAAACATGCCATTTAAAGAA+TGG | - | chr5_4:41666533-41666552 | None:intergenic | 25.0% |
| ! | AAGATAAAGCAAAACAAACA+CGG | - | chr5_4:41666925-41666944 | None:intergenic | 25.0% |
| !!! | AGATATTTTGAAATGTCTTG+TGG | + | chr5_4:41666998-41667017 | Msa0851380:intron | 25.0% |
| !!! | ATATTGCTTTTTGAACTTTG+TGG | + | chr5_4:41667185-41667204 | Msa0851380:intron | 25.0% |
| !!! | TTTCTTTTAAAACTTGTCAG+AGG | + | chr5_4:41667213-41667232 | Msa0851380:intron | 25.0% |
| !!! | TTCTTTTAAAACTTGTCAGA+GGG | + | chr5_4:41667214-41667233 | Msa0851380:intron | 25.0% |
| !! | ATAAAGGAAATAGGTTGTTT+TGG | + | chr5_4:41667531-41667550 | Msa0851380:intron | 25.0% |
| !!! | TAAAGGAAATAGGTTGTTTT+GGG | + | chr5_4:41667532-41667551 | Msa0851380:intron | 25.0% |
| !! | TGTTTAAGGGTATAATTGAA+AGG | - | chr5_4:41667569-41667588 | None:intergenic | 25.0% |
| ! | CAAGCAAAAAAATGGTAAAA+TGG | - | chr5_4:41667701-41667720 | None:intergenic | 25.0% |
| !! | ATTTTGTCTGGATATACTTT+TGG | + | chr5_4:41668015-41668034 | Msa0851380:three_prime_UTR | 25.0% |
| !! | TTTTGTCTGGATATACTTTT+GGG | + | chr5_4:41668016-41668035 | Msa0851380:three_prime_UTR | 25.0% |
| !!! | GTAGAGGTTTTGAGTTTAAT+TGG | - | chr5_4:41663285-41663304 | None:intergenic | 30.0% |
| CAAAACCTCTACAACAAATT+AGG | + | chr5_4:41663293-41663312 | Msa0851380:five_prime_UTR | 30.0% | |
| !! | AAACTTTGAAGTGCAAATTC+AGG | - | chr5_4:41663537-41663556 | None:intergenic | 30.0% |
| ! | TGTATTTGGTTTCATGTTAC+AGG | + | chr5_4:41663818-41663837 | Msa0851380:intron | 30.0% |
| TTTCATGTTACAGGTTCAAT+CGG | + | chr5_4:41663827-41663846 | Msa0851380:intron | 30.0% | |
| ! | ATTTTCAACATGTTACAAGC+TGG | - | chr5_4:41663989-41664008 | None:intergenic | 30.0% |
| !! | TTGATAATGATCCTCAACAT+AGG | + | chr5_4:41664180-41664199 | Msa0851380:intron | 30.0% |
| ATTTACCAATTCCTATGTTG+AGG | - | chr5_4:41664194-41664213 | None:intergenic | 30.0% | |
| !!! | TTTGGCAATTTTTGAGTAAC+GGG | - | chr5_4:41664286-41664305 | None:intergenic | 30.0% |
| TTAATTGTTTGATACTGTCC+CGG | - | chr5_4:41664344-41664363 | None:intergenic | 30.0% | |
| CATAAGTACTACTACTATCA+TGG | - | chr5_4:41664444-41664463 | None:intergenic | 30.0% | |
| ! | CTTATGATTTCCTTTTTGGA+CGG | + | chr5_4:41664458-41664477 | Msa0851380:intron | 30.0% |
| TACTTGACATGATAAGGATA+CGG | - | chr5_4:41664649-41664668 | None:intergenic | 30.0% | |
| CATGTATACTTGACATGATA+AGG | - | chr5_4:41664655-41664674 | None:intergenic | 30.0% | |
| TTCATCATGCAAATGATGAT+TGG | + | chr5_4:41664948-41664967 | Msa0851380:intron | 30.0% | |
| TCATCATGCAAATGATGATT+GGG | + | chr5_4:41664949-41664968 | Msa0851380:intron | 30.0% | |
| AAAGAAAACACGATCATACT+GGG | - | chr5_4:41665123-41665142 | None:intergenic | 30.0% | |
| ATAGAATCATGTTGGCATTT+AGG | + | chr5_4:41665193-41665212 | Msa0851380:intron | 30.0% | |
| ! | GTATAGTCAATTTGGTAACA+GGG | - | chr5_4:41665360-41665379 | None:intergenic | 30.0% |
| ! | TGTATAGTCAATTTGGTAAC+AGG | - | chr5_4:41665361-41665380 | None:intergenic | 30.0% |
| CTGTTGTTGTATAGTCAATT+TGG | - | chr5_4:41665368-41665387 | None:intergenic | 30.0% | |
| ! | CAATTTCAACTTCGTTGATT+TGG | + | chr5_4:41665399-41665418 | Msa0851380:intron | 30.0% |
| !! | CTTTTTAATTGTGGAGGAAT+TGG | + | chr5_4:41665456-41665475 | Msa0851380:intron | 30.0% |
| !! | TTCATTTTTGCCCTTTTGAT+TGG | + | chr5_4:41665541-41665560 | Msa0851380:intron | 30.0% |
| GAAAATAACACACAAAACCA+AGG | - | chr5_4:41665570-41665589 | None:intergenic | 30.0% | |
| CTAAGTTATCCTCAAATTCT+CGG | - | chr5_4:41665680-41665699 | None:intergenic | 30.0% | |
| ! | TGTTAGTTTCTTGTCTACTA+TGG | - | chr5_4:41665849-41665868 | None:intergenic | 30.0% |
| TGGTGTATGCTATATGTAAT+TGG | + | chr5_4:41666005-41666024 | Msa0851380:intron | 30.0% | |
| AAAGTGCAACATAGATAACA+TGG | - | chr5_4:41666181-41666200 | None:intergenic | 30.0% | |
| ATGTTGCACTTTCTCTTATT+TGG | + | chr5_4:41666189-41666208 | Msa0851380:intron | 30.0% | |
| ACTACATCTAAGAAACAAGA+TGG | + | chr5_4:41666294-41666313 | Msa0851380:CDS | 30.0% | |
| CTACATCTAAGAAACAAGAT+GGG | + | chr5_4:41666295-41666314 | Msa0851380:CDS | 30.0% | |
| !!! | GCTTGTTTTTACTGTTGTTA+TGG | + | chr5_4:41666381-41666400 | Msa0851380:intron | 30.0% |
| TTAAATAGTTGCACACATTG+TGG | + | chr5_4:41666550-41666569 | Msa0851380:intron | 30.0% | |
| AAAATGAAGAATCTAGCTAG+TGG | + | chr5_4:41667093-41667112 | Msa0851380:intron | 30.0% | |
| ! | AGACGATAATTCGATTTTTG+AGG | - | chr5_4:41667263-41667282 | None:intergenic | 30.0% |
| AAAATCGAATTATCGTCTCT+TGG | + | chr5_4:41667265-41667284 | Msa0851380:intron | 30.0% | |
| AAATCGAATTATCGTCTCTT+GGG | + | chr5_4:41667266-41667285 | Msa0851380:intron | 30.0% | |
| GGGAACTGTTAATAATAAAC+TGG | - | chr5_4:41667366-41667385 | None:intergenic | 30.0% | |
| TACTAGCAAATAGTTGTAGA+TGG | - | chr5_4:41667806-41667825 | None:intergenic | 30.0% | |
| ! | ACTATTTGCTAGTACTATAC+TGG | + | chr5_4:41667812-41667831 | Msa0851380:exon | 30.0% |
| TTTCAACAACTTGACTAAAC+TGG | + | chr5_4:41668157-41668176 | Msa0851380:three_prime_UTR | 30.0% | |
| !! | GAAACCCTAATTTGTTGTAG+AGG | - | chr5_4:41663301-41663320 | None:intergenic | 35.0% |
| ! | AAATTCTCTCTTTGGTGCAA+TGG | + | chr5_4:41663332-41663351 | Msa0851380:exon | 35.0% |
| AAGGTTCGATTCTCAATTGT+TGG | + | chr5_4:41663627-41663646 | Msa0851380:intron | 35.0% | |
| ! | GTGATTAATTTTCCGATCTG+TGG | + | chr5_4:41664067-41664086 | Msa0851380:intron | 35.0% |
| TCAACAATACCTGTAGGTTA+GGG | + | chr5_4:41664111-41664130 | Msa0851380:intron | 35.0% | |
| TAGGTTAGGGGATATAAAGA+TGG | + | chr5_4:41664124-41664143 | Msa0851380:intron | 35.0% | |
| !! | ATATAAAGATGGCTTGGTGT+GGG | + | chr5_4:41664135-41664154 | Msa0851380:intron | 35.0% |
| ATGATCCTCAACATAGGAAT+TGG | + | chr5_4:41664186-41664205 | Msa0851380:intron | 35.0% | |
| ATGAATACACTCTGTGTGAA+TGG | + | chr5_4:41664228-41664247 | Msa0851380:intron | 35.0% | |
| !!! | TTGGCAATTTTTGAGTAACG+GGG | - | chr5_4:41664285-41664304 | None:intergenic | 35.0% |
| ! | ATTTTATTGTGCTCCGGATA+CGG | + | chr5_4:41664414-41664433 | Msa0851380:intron | 35.0% |
| ! | ATCTTAAGTACCGTCCAAAA+AGG | - | chr5_4:41664471-41664490 | None:intergenic | 35.0% |
| GATTAATGTTCAAGTGCAAG+TGG | + | chr5_4:41664695-41664714 | Msa0851380:intron | 35.0% | |
| CATCATTTGCATGATGAATC+TGG | - | chr5_4:41664946-41664965 | None:intergenic | 35.0% | |
| TATTAGATCTGTTAGCAAGC+TGG | + | chr5_4:41665080-41665099 | Msa0851380:intron | 35.0% | |
| CAAAGAAAACACGATCATAC+TGG | - | chr5_4:41665124-41665143 | None:intergenic | 35.0% | |
| AATAATTGTAAGAGGAAGCC+TGG | - | chr5_4:41665150-41665169 | None:intergenic | 35.0% | |
| !! | ATTGCCTTCTCATTTTGAAG+TGG | + | chr5_4:41665285-41665304 | Msa0851380:intron | 35.0% |
| ! | TATGCCACTTCAAAATGAGA+AGG | - | chr5_4:41665292-41665311 | None:intergenic | 35.0% |
| !!! | TTCTCATTTTGAAGTGGCAT+AGG | + | chr5_4:41665291-41665310 | Msa0851380:intron | 35.0% |
| ! | GCATAGGATGGTAGATTTTA+CGG | + | chr5_4:41665307-41665326 | Msa0851380:intron | 35.0% |
| !! | CGGGTCTGACAATTTAATTT+TGG | + | chr5_4:41665334-41665353 | Msa0851380:intron | 35.0% |
| AACCTATACTATTGAGAACC+TGG | + | chr5_4:41665432-41665451 | Msa0851380:intron | 35.0% | |
| !! | GAACCTGGTCTTTTTAATTG+TGG | + | chr5_4:41665447-41665466 | Msa0851380:intron | 35.0% |
| CGAGAATTTGAGGATAACTT+AGG | + | chr5_4:41665678-41665697 | Msa0851380:intron | 35.0% | |
| GAATGTTGTTCTTTGACTAG+GGG | - | chr5_4:41665898-41665917 | None:intergenic | 35.0% | |
| GGAATGTTGTTCTTTGACTA+GGG | - | chr5_4:41665899-41665918 | None:intergenic | 35.0% | |
| ATCATGCATCCAAGATACAT+GGG | - | chr5_4:41665921-41665940 | None:intergenic | 35.0% | |
| TATCATGCATCCAAGATACA+TGG | - | chr5_4:41665922-41665941 | None:intergenic | 35.0% | |
| ATATCTCATAGAGTGAAAGG+TGG | + | chr5_4:41665954-41665973 | Msa0851380:intron | 35.0% | |
| ATTGCTACAACTACAAGTCT+CGG | - | chr5_4:41666426-41666445 | None:intergenic | 35.0% | |
| ! | ACATGCCATTTAAAGAATGG+TGG | - | chr5_4:41666530-41666549 | None:intergenic | 35.0% |
| TGCAAATTCCAATGCAATGA+AGG | - | chr5_4:41666793-41666812 | None:intergenic | 35.0% | |
| ATTTACGAGCTCTGTCTATT+TGG | + | chr5_4:41666968-41666987 | Msa0851380:intron | 35.0% | |
| !!! | TGGTCTATTTTTGCACTGTT+TGG | + | chr5_4:41667133-41667152 | Msa0851380:intron | 35.0% |
| !!! | GGTCTATTTTTGCACTGTTT+GGG | + | chr5_4:41667134-41667153 | Msa0851380:intron | 35.0% |
| !! | ATTCGATTTTTGAGGATGAG+TGG | - | chr5_4:41667255-41667274 | None:intergenic | 35.0% |
| AATCGAATTATCGTCTCTTG+GGG | + | chr5_4:41667267-41667286 | Msa0851380:intron | 35.0% | |
| GATTCACAGTTGAACGAATT+AGG | - | chr5_4:41667323-41667342 | None:intergenic | 35.0% | |
| AGATAATTCCTGATGTCTCT+TGG | - | chr5_4:41667440-41667459 | None:intergenic | 35.0% | |
| AGTCATCGCAAGCAAAAAAA+TGG | - | chr5_4:41667709-41667728 | None:intergenic | 35.0% | |
| !!! | TTTTTTTGCTTGCGATGACT+AGG | + | chr5_4:41667709-41667728 | Msa0851380:intron | 35.0% |
| TATACTGGTACTTGTCTGTT+TGG | + | chr5_4:41667827-41667846 | Msa0851380:three_prime_UTR | 35.0% | |
| TTGGGGAAAACAACAAAATC+AGG | - | chr5_4:41667926-41667945 | None:intergenic | 35.0% | |
| ! | GATTCAAGTGAGATTTTGTC+TGG | + | chr5_4:41668003-41668022 | Msa0851380:three_prime_UTR | 35.0% |
| ACTTGACTAAACTGGTAAAC+TGG | + | chr5_4:41668165-41668184 | Msa0851380:three_prime_UTR | 35.0% | |
| ! | TTTTGTGTTTGCGAAAGCGA+GGG | - | chr5_4:41663259-41663278 | None:intergenic | 40.0% |
| ! | TTTTTGTGTTTGCGAAAGCG+AGG | - | chr5_4:41663260-41663279 | None:intergenic | 40.0% |
| CGCTTCTCAAATTCTCTCTT+TGG | + | chr5_4:41663324-41663343 | Msa0851380:five_prime_UTR | 40.0% | |
| ATTGGTACTGTGGTGTTCAA+AGG | - | chr5_4:41663384-41663403 | None:intergenic | 40.0% | |
| CAAATTCAGTACGTAACGCA+CGG | + | chr5_4:41663462-41663481 | Msa0851380:CDS | 40.0% | |
| ATTGAGAATCGAACCTTAGC+AGG | - | chr5_4:41663624-41663643 | None:intergenic | 40.0% | |
| !! | TCAATCGGTGTTGTTACTGT+TGG | + | chr5_4:41663842-41663861 | Msa0851380:CDS | 40.0% |
| !! | CAATCGGTGTTGTTACTGTT+GGG | + | chr5_4:41663843-41663862 | Msa0851380:CDS | 40.0% |
| GGGAAGTAAATACTAGTGAG+TGG | + | chr5_4:41664035-41664054 | Msa0851380:intron | 40.0% | |
| CTTAGGTCAACAATACCTGT+AGG | + | chr5_4:41664105-41664124 | Msa0851380:intron | 40.0% | |
| GTCAACAATACCTGTAGGTT+AGG | + | chr5_4:41664110-41664129 | Msa0851380:intron | 40.0% | |
| CAACAATACCTGTAGGTTAG+GGG | + | chr5_4:41664112-41664131 | Msa0851380:intron | 40.0% | |
| CTTTATATCCCCTAACCTAC+AGG | - | chr5_4:41664123-41664142 | None:intergenic | 40.0% | |
| TAGGGGATATAAAGATGGCT+TGG | + | chr5_4:41664129-41664148 | Msa0851380:intron | 40.0% | |
| !! | GATATAAAGATGGCTTGGTG+TGG | + | chr5_4:41664134-41664153 | Msa0851380:intron | 40.0% |
| ATATCAGGATGTATCCGTGT+CGG | - | chr5_4:41664318-41664337 | None:intergenic | 40.0% | |
| GGATACATCCTGATATGTAC+CGG | + | chr5_4:41664322-41664341 | Msa0851380:intron | 40.0% | |
| GATACATCCTGATATGTACC+GGG | + | chr5_4:41664323-41664342 | Msa0851380:intron | 40.0% | |
| ATGATAAGGATACGGCGATA+TGG | - | chr5_4:41664641-41664660 | None:intergenic | 40.0% | |
| !! | AATTCTTTGGGTTTTGGTGC+AGG | + | chr5_4:41664726-41664745 | Msa0851380:intron | 40.0% |
| ATCGAGAAGCCTCATTACTT+AGG | + | chr5_4:41664785-41664804 | Msa0851380:CDS | 40.0% | |
| AAGCCTCATTACTTAGGTTC+CGG | + | chr5_4:41664791-41664810 | Msa0851380:CDS | 40.0% | |
| ATCTTTCTTTCCTCTTCTGC+CGG | - | chr5_4:41664813-41664832 | None:intergenic | 40.0% | |
| TAAGCTTAAAATGCAAGCCC+CGG | - | chr5_4:41664902-41664921 | None:intergenic | 40.0% | |
| ! | ATCGTGTTTTCTTTGCATCC+AGG | + | chr5_4:41665129-41665148 | Msa0851380:intron | 40.0% |
| !!! | CATTTTGAAGTGGCATAGGA+TGG | + | chr5_4:41665295-41665314 | Msa0851380:intron | 40.0% |
| ! | TAGGATGGTAGATTTTACGG+TGG | + | chr5_4:41665310-41665329 | Msa0851380:intron | 40.0% |
| ! | AGGATGGTAGATTTTACGGT+GGG | + | chr5_4:41665311-41665330 | Msa0851380:intron | 40.0% |
| GACCAGGTTCTCAATAGTAT+AGG | - | chr5_4:41665437-41665456 | None:intergenic | 40.0% | |
| CCTCCACAATTAAAAAGACC+AGG | - | chr5_4:41665453-41665472 | None:intergenic | 40.0% | |
| !! | CCTGGTCTTTTTAATTGTGG+AGG | + | chr5_4:41665450-41665469 | Msa0851380:intron | 40.0% |
| ACCAAGGACACCAATCAAAA+GGG | - | chr5_4:41665554-41665573 | None:intergenic | 40.0% | |
| AACCAAGGACACCAATCAAA+AGG | - | chr5_4:41665555-41665574 | None:intergenic | 40.0% | |
| ACTAGTTGACCGAGAATTTG+AGG | + | chr5_4:41665668-41665687 | Msa0851380:intron | 40.0% | |
| ! | CATACCAGAACTCTTTTGAC+AGG | - | chr5_4:41665716-41665735 | None:intergenic | 40.0% |
| GGGAATGTTGTTCTTTGACT+AGG | - | chr5_4:41665900-41665919 | None:intergenic | 40.0% | |
| ACAACATTCCCCATGTATCT+TGG | + | chr5_4:41665909-41665928 | Msa0851380:intron | 40.0% | |
| TCATGCATCCAAGATACATG+GGG | - | chr5_4:41665920-41665939 | None:intergenic | 40.0% | |
| ATAATGCCTTGTGACATGCT+TGG | + | chr5_4:41665985-41666004 | Msa0851380:intron | 40.0% | |
| ! | GCATCAAGTTTTCTCTTCAG+TGG | + | chr5_4:41666482-41666501 | Msa0851380:intron | 40.0% |
| ! | CAAGTTTTCTCTTCAGTGGA+AGG | + | chr5_4:41666486-41666505 | Msa0851380:intron | 40.0% |
| CAAAATCAACCCCAATGATG+CGG | + | chr5_4:41666581-41666600 | Msa0851380:CDS | 40.0% | |
| TCCAATGCAATGAAGGAACA+GGG | - | chr5_4:41666786-41666805 | None:intergenic | 40.0% | |
| TTCCAATGCAATGAAGGAAC+AGG | - | chr5_4:41666787-41666806 | None:intergenic | 40.0% | |
| AGCTAGTGGTGTATAATGTC+TGG | + | chr5_4:41667107-41667126 | Msa0851380:intron | 40.0% | |
| ACCAAGACCATTGTCAAAAG+GGG | - | chr5_4:41667387-41667406 | None:intergenic | 40.0% | |
| GACCAAGACCATTGTCAAAA+GGG | - | chr5_4:41667388-41667407 | None:intergenic | 40.0% | |
| AGACCAAGACCATTGTCAAA+AGG | - | chr5_4:41667389-41667408 | None:intergenic | 40.0% | |
| ! | ATGGTCTTGGTCTATTCTAC+AGG | + | chr5_4:41667396-41667415 | Msa0851380:intron | 40.0% |
| ! | TGGTCTTGGTCTATTCTACA+GGG | + | chr5_4:41667397-41667416 | Msa0851380:intron | 40.0% |
| ATTCCTGATGTCTCTTGGAA+AGG | - | chr5_4:41667435-41667454 | None:intergenic | 40.0% | |
| GAAAGAAATACCTGCTCAAC+AGG | - | chr5_4:41667469-41667488 | None:intergenic | 40.0% | |
| GTTGTAGATGGTTGCTCAAT+AGG | - | chr5_4:41667794-41667813 | None:intergenic | 40.0% | |
| TTTGTGTTTGCGAAAGCGAG+GGG | - | chr5_4:41663258-41663277 | None:intergenic | 45.0% | |
| !! | TGAGAGTGTTCGTACATTGG+TGG | - | chr5_4:41663360-41663379 | None:intergenic | 45.0% |
| !! | GGTTGAGAGTGTTCGTACAT+TGG | - | chr5_4:41663363-41663382 | None:intergenic | 45.0% |
| ! | TCCAACTCCGATGCTGTTTA+CGG | + | chr5_4:41663495-41663514 | Msa0851380:CDS | 45.0% |
| GGTGCCTCAACAAAGTTTGA+GGG | + | chr5_4:41663899-41663918 | Msa0851380:CDS | 45.0% | |
| ACCACCCTCAAACTTTGTTG+AGG | - | chr5_4:41663906-41663925 | None:intergenic | 45.0% | |
| GCATTTAGCAAGCCACAGAT+CGG | - | chr5_4:41664082-41664101 | None:intergenic | 45.0% | |
| !! | GGCTTGCTAAATGCTAGCTT+AGG | + | chr5_4:41664088-41664107 | Msa0851380:intron | 45.0% |
| !! | CCAAATATCGGTTTCCGACA+CGG | + | chr5_4:41664301-41664320 | Msa0851380:intron | 45.0% |
| ATACTGTCCCGGTACATATC+AGG | - | chr5_4:41664333-41664352 | None:intergenic | 45.0% | |
| !! | GGTTTTGGTGCAGGAATCAA+TGG | + | chr5_4:41664735-41664754 | Msa0851380:intron | 45.0% |
| TACGTCAAGAAGTTGCACTC+AGG | + | chr5_4:41664860-41664879 | Msa0851380:CDS | 45.0% | |
| AGGTCCGATAACTATCCTAC+CGG | + | chr5_4:41664880-41664899 | Msa0851380:intron | 45.0% | |
| ! | TCTGTTAGCAAGCTGGTCTA+CGG | + | chr5_4:41665087-41665106 | Msa0851380:intron | 45.0% |
| GTTGGCATTTAGGCTTGACT+TGG | + | chr5_4:41665203-41665222 | Msa0851380:intron | 45.0% | |
| TCAAGACAGACCATATGTGC+TGG | + | chr5_4:41665237-41665256 | Msa0851380:intron | 45.0% | |
| CTGTGATAGACCAGCACATA+TGG | - | chr5_4:41665250-41665269 | None:intergenic | 45.0% | |
| ! | ATGGTAGATTTTACGGTGGG+CGG | + | chr5_4:41665314-41665333 | Msa0851380:intron | 45.0% |
| GTTGCCTGTCAAAAGAGTTC+TGG | + | chr5_4:41665709-41665728 | Msa0851380:intron | 45.0% | |
| GTTCTTTGACTAGGGGAAGA+AGG | - | chr5_4:41665891-41665910 | None:intergenic | 45.0% | |
| CATACACCAAGCATGTCACA+AGG | - | chr5_4:41665994-41666013 | None:intergenic | 45.0% | |
| ATGTAGGATGCAGCGAAAGA+AGG | + | chr5_4:41666263-41666282 | Msa0851380:intron | 45.0% | |
| TGTAGGATGCAGCGAAAGAA+GGG | + | chr5_4:41666264-41666283 | Msa0851380:intron | 45.0% | |
| CAAGATGGGTCCAATAGTTG+TGG | + | chr5_4:41666309-41666328 | Msa0851380:CDS | 45.0% | |
| CTGGTCTGTACCACAACTAT+TGG | - | chr5_4:41666322-41666341 | None:intergenic | 45.0% | |
| CAATAGTTGTGGTACAGACC+AGG | + | chr5_4:41666320-41666339 | Msa0851380:CDS | 45.0% | |
| ! | TCACGAGATTTCTGATGGAC+TGG | - | chr5_4:41666361-41666380 | None:intergenic | 45.0% |
| CAAGCTCACGAGATTTCTGA+TGG | - | chr5_4:41666366-41666385 | None:intergenic | 45.0% | |
| ! | CAAGCATTGCAAAGTGACCT+TGG | - | chr5_4:41666622-41666641 | None:intergenic | 45.0% |
| ! | AGGTCACTTTGCAATGCTTG+TGG | + | chr5_4:41666622-41666641 | Msa0851380:CDS | 45.0% |
| ! | GGTCACTTTGCAATGCTTGT+GGG | + | chr5_4:41666623-41666642 | Msa0851380:CDS | 45.0% |
| ! | CAATGCTTGTGGGCTTTTCT+GGG | + | chr5_4:41666633-41666652 | Msa0851380:CDS | 45.0% |
| ! | TGGGCTTTTCTGGGCAAATA+GGG | + | chr5_4:41666642-41666661 | Msa0851380:CDS | 45.0% |
| ! | CTTTTCTGGGCAAATAGGGT+AGG | + | chr5_4:41666646-41666665 | Msa0851380:intron | 45.0% |
| TGCAATGAAGGAACAGGGAA+GGG | - | chr5_4:41666781-41666800 | None:intergenic | 45.0% | |
| ATGCAATGAAGGAACAGGGA+AGG | - | chr5_4:41666782-41666801 | None:intergenic | 45.0% | |
| TCCCTGTTCCTTCATTGCAT+TGG | + | chr5_4:41666782-41666801 | Msa0851380:intron | 45.0% | |
| TGGTGTATAATGTCTGGCAC+TGG | + | chr5_4:41667113-41667132 | Msa0851380:intron | 45.0% | |
| ! | ACAGTTCCCCCTTTTGACAA+TGG | + | chr5_4:41667377-41667396 | Msa0851380:intron | 45.0% |
| CCAAGACCATTGTCAAAAGG+GGG | - | chr5_4:41667386-41667405 | None:intergenic | 45.0% | |
| AGACCTTTCCAAGAGACATC+AGG | + | chr5_4:41667429-41667448 | Msa0851380:CDS | 45.0% | |
| ATCTACTGTACCTGTTGAGC+AGG | + | chr5_4:41667456-41667475 | Msa0851380:CDS | 45.0% | |
| !!! | GGAAATAGGTTGTTTTGGGC+TGG | + | chr5_4:41667536-41667555 | Msa0851380:intron | 45.0% |
| !! | TGCGATGACTAGGTTGATCA+AGG | + | chr5_4:41667719-41667738 | Msa0851380:intron | 45.0% |
| CAAGGTAACAACTCAGACTG+TGG | + | chr5_4:41667737-41667756 | Msa0851380:CDS | 45.0% | |
| TAGGAGTGATGTTGTGTGCA+GGG | - | chr5_4:41667775-41667794 | None:intergenic | 45.0% | |
| ATAGGAGTGATGTTGTGTGC+AGG | - | chr5_4:41667776-41667795 | None:intergenic | 45.0% | |
| TTGGATGCACAGCTGTCTAT+TGG | + | chr5_4:41667846-41667865 | Msa0851380:three_prime_UTR | 45.0% | |
| !!! | TTATTTTTTTTTAAATAGAT+TGG | + | chr5_4:41664372-41664391 | Msa0851380:intron | 5.0% |
| !!! | AATTTTTTATTAAAGTATTT+TGG | + | chr5_4:41664590-41664609 | Msa0851380:intron | 5.0% |
| ! | GAAGAGAGTGCAGAAGGTGT+AGG | - | chr5_4:41663235-41663254 | None:intergenic | 50.0% |
| TTGTGTTTGCGAAAGCGAGG+GGG | - | chr5_4:41663257-41663276 | None:intergenic | 50.0% | |
| !! | TTGATGTTGAGCGTCGATGC+CGG | - | chr5_4:41663445-41663464 | None:intergenic | 50.0% |
| TCAGTACGTAACGCACGGTA+TGG | + | chr5_4:41663467-41663486 | Msa0851380:CDS | 50.0% | |
| ! | TCCGATGCTGTTTACGGCAA+CGG | + | chr5_4:41663501-41663520 | Msa0851380:CDS | 50.0% |
| TGACTCTGTTACGCCTGCTA+AGG | + | chr5_4:41663608-41663627 | Msa0851380:CDS | 50.0% | |
| !! | TCGGTGTTGTTACTGTTGGG+TGG | + | chr5_4:41663846-41663865 | Msa0851380:CDS | 50.0% |
| GGATGTGAACAACCTGATGC+TGG | + | chr5_4:41663867-41663886 | Msa0851380:CDS | 50.0% | |
| ACCTGATGCTGGTGTGAATG+CGG | + | chr5_4:41663878-41663897 | Msa0851380:CDS | 50.0% | |
| CGGTGCCTCAACAAAGTTTG+AGG | + | chr5_4:41663898-41663917 | Msa0851380:CDS | 50.0% | |
| GCCTCAACAAAGTTTGAGGG+TGG | + | chr5_4:41663902-41663921 | Msa0851380:CDS | 50.0% | |
| CCGTGTCGGAAACCGATATT+TGG | - | chr5_4:41664304-41664323 | None:intergenic | 50.0% | |
| CTGCCGGAACCTAAGTAATG+AGG | - | chr5_4:41664797-41664816 | None:intergenic | 50.0% | |
| TACTTAGGTTCCGGCAGAAG+AGG | + | chr5_4:41664800-41664819 | Msa0851380:CDS | 50.0% | |
| GGTCCGATAACTATCCTACC+GGG | + | chr5_4:41664881-41664900 | Msa0851380:intron | 50.0% | |
| GTCCGATAACTATCCTACCG+GGG | + | chr5_4:41664882-41664901 | Msa0851380:intron | 50.0% | |
| AGCCCCGGTAGGATAGTTAT+CGG | - | chr5_4:41664887-41664906 | None:intergenic | 50.0% | |
| CTTAAAATGCAAGCCCCGGT+AGG | - | chr5_4:41664898-41664917 | None:intergenic | 50.0% | |
| ! | CTGTTAGCAAGCTGGTCTAC+GGG | + | chr5_4:41665088-41665107 | Msa0851380:intron | 50.0% |
| ! | TGGTAGATTTTACGGTGGGC+GGG | + | chr5_4:41665315-41665334 | Msa0851380:intron | 50.0% |
| !! | GCCCTTTTGATTGGTGTCCT+TGG | + | chr5_4:41665550-41665569 | Msa0851380:intron | 50.0% |
| TACAGACCAGGATTCTAGCC+AGG | + | chr5_4:41666332-41666351 | Msa0851380:CDS | 50.0% | |
| !! | TTTCTGATGGACTGGCATCC+TGG | - | chr5_4:41666353-41666372 | None:intergenic | 50.0% |
| CAAAGTGACCTTGGACCAGA+TGG | - | chr5_4:41666613-41666632 | None:intergenic | 50.0% | |
| ! | GCAATGCTTGTGGGCTTTTC+TGG | + | chr5_4:41666632-41666651 | Msa0851380:CDS | 50.0% |
| ! | GTGGGCTTTTCTGGGCAAAT+AGG | + | chr5_4:41666641-41666660 | Msa0851380:CDS | 50.0% |
| AGGGTAGGTGTTCTCTCCAA+AGG | + | chr5_4:41666661-41666680 | Msa0851380:intron | 50.0% | |
| ! | CCCCCTTTTGACAATGGTCT+TGG | + | chr5_4:41667383-41667402 | Msa0851380:intron | 50.0% |
| ACCACAGTACCAATCACCGC+CGG | + | chr5_4:41663390-41663409 | Msa0851380:CDS | 55.0% | |
| ! | GCCGTAAACAGCATCGGAGT+TGG | - | chr5_4:41663499-41663518 | None:intergenic | 55.0% |
| GCCGTTGCCGTAAACAGCAT+CGG | - | chr5_4:41663505-41663524 | None:intergenic | 55.0% | |
| ! | GATGCTGTTTACGGCAACGG+CGG | + | chr5_4:41663504-41663523 | Msa0851380:CDS | 55.0% |
| ! | CAGCTTACGCTGTCGTTTCG+TGG | + | chr5_4:41663570-41663589 | Msa0851380:CDS | 55.0% |
| ACCGCATTCACACCAGCATC+AGG | - | chr5_4:41663882-41663901 | None:intergenic | 55.0% | |
| CTATCATGGGCAGCCGTATC+CGG | - | chr5_4:41664430-41664449 | None:intergenic | 55.0% | |
| TCCTGCTGACAAGTCCTCGT+AGG | + | chr5_4:41665738-41665757 | Msa0851380:intron | 55.0% | |
| CCTGCTGACAAGTCCTCGTA+GGG | + | chr5_4:41665739-41665758 | Msa0851380:intron | 55.0% | |
| TGACAAGTCCTCGTAGGGCA+CGG | + | chr5_4:41665744-41665763 | Msa0851380:intron | 55.0% | |
| TTCTTAGTCCGTGCCCTACG+AGG | - | chr5_4:41665755-41665774 | None:intergenic | 55.0% | |
| TGGCATCCTGGCTAGAATCC+TGG | - | chr5_4:41666341-41666360 | None:intergenic | 55.0% | |
| ! | GAGGGGGAAGAGAGTGCAGA+AGG | - | chr5_4:41663241-41663260 | None:intergenic | 60.0% |
| !! | GGCTTGGTGTGGGAGAGTTC+AGG | + | chr5_4:41664145-41664164 | Msa0851380:intron | 60.0% |
| GGTGTGGGAGAGTTCAGGAG+TGG | + | chr5_4:41664150-41664169 | Msa0851380:intron | 60.0% | |
| CCCTACGAGGACTTGTCAGC+AGG | - | chr5_4:41665742-41665761 | None:intergenic | 60.0% | |
| TCAACCCCAATGATGCGGCG+AGG | + | chr5_4:41666586-41666605 | Msa0851380:CDS | 60.0% | |
| CAACCCCAATGATGCGGCGA+GGG | + | chr5_4:41666587-41666606 | Msa0851380:CDS | 60.0% | |
| ATGGCCCTCGCCGCATCATT+GGG | - | chr5_4:41666594-41666613 | None:intergenic | 60.0% | |
| GCCGGCGGTGATTGGTACTG+TGG | - | chr5_4:41663394-41663413 | None:intergenic | 65.0% | |
| TCGCTTTCGCCGGCGGTGAT+TGG | - | chr5_4:41663402-41663421 | None:intergenic | 65.0% | |
| ! | GGAACCGTCGTCGCTTTCGC+CGG | - | chr5_4:41663412-41663431 | None:intergenic | 65.0% |
| GGCGAAAGCGACGACGGTTC+CGG | + | chr5_4:41663411-41663430 | Msa0851380:CDS | 65.0% | |
| !! | TTGAGCGTCGATGCCGGCGT+CGG | - | chr5_4:41663439-41663458 | None:intergenic | 65.0% |
| TGGCCCTCGCCGCATCATTG+GGG | - | chr5_4:41666593-41666612 | None:intergenic | 65.0% | |
| GATGGCCCTCGCCGCATCAT+TGG | - | chr5_4:41666595-41666614 | None:intergenic | 65.0% | |
| ATGATGCGGCGAGGGCCATC+TGG | + | chr5_4:41666595-41666614 | Msa0851380:CDS | 65.0% | |
| ACCGCCGGCGAAAGCGACGA+CGG | + | chr5_4:41663405-41663424 | Msa0851380:CDS | 70.0% | |
| ! | ACCGTCGTCGCTTTCGCCGG+CGG | - | chr5_4:41663409-41663428 | None:intergenic | 70.0% |
| !! | TGAGCGTCGATGCCGGCGTC+GGG | - | chr5_4:41663438-41663457 | None:intergenic | 70.0% |
| GGCGAGGGCCATCTGGTCCA+AGG | + | chr5_4:41666602-41666621 | Msa0851380:CDS | 70.0% | |
| GACGGTTCCGGTCCCGACGC+CGG | + | chr5_4:41663423-41663442 | Msa0851380:CDS | 75.0% | |
| ! | GTCGATGCCGGCGTCGGGAC+CGG | - | chr5_4:41663433-41663452 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 41663225 | 41668189 | 41663225 | ID=Msa0851380;Name=Msa0851380 |
| chr5_4 | mRNA | 41663225 | 41668189 | 41663225 | ID=Msa0851380-mRNA-1;Parent=Msa0851380;Name=Msa0851380-mRNA-1;_AED=0.04;_eAED=0.04;_QI=126|1|1|1|0.85|0.75|8|305|287 |
| chr5_4 | exon | 41663225 | 41663629 | 41663225 | ID=Msa0851380-mRNA-1:exon:13156;Parent=Msa0851380-mRNA-1 |
| chr5_4 | exon | 41663840 | 41663923 | 41663840 | ID=Msa0851380-mRNA-1:exon:13157;Parent=Msa0851380-mRNA-1 |
| chr5_4 | exon | 41664748 | 41664881 | 41664748 | ID=Msa0851380-mRNA-1:exon:13158;Parent=Msa0851380-mRNA-1 |
| chr5_4 | exon | 41666269 | 41666376 | 41666269 | ID=Msa0851380-mRNA-1:exon:13159;Parent=Msa0851380-mRNA-1 |
| chr5_4 | exon | 41666558 | 41666663 | 41666558 | ID=Msa0851380-mRNA-1:exon:13160;Parent=Msa0851380-mRNA-1 |
| chr5_4 | exon | 41667418 | 41667477 | 41667418 | ID=Msa0851380-mRNA-1:exon:13161;Parent=Msa0851380-mRNA-1 |
| chr5_4 | exon | 41667731 | 41668085 | 41667731 | ID=Msa0851380-mRNA-1:exon:13162;Parent=Msa0851380-mRNA-1 |
| chr5_4 | exon | 41668147 | 41668189 | 41668147 | ID=Msa0851380-mRNA-1:exon:13163;Parent=Msa0851380-mRNA-1 |
| chr5_4 | five_prime_UTR | 41663225 | 41663350 | 41663225 | ID=Msa0851380-mRNA-1:five_prime_utr;Parent=Msa0851380-mRNA-1 |
| chr5_4 | CDS | 41663351 | 41663629 | 41663351 | ID=Msa0851380-mRNA-1:cds;Parent=Msa0851380-mRNA-1 |
| chr5_4 | CDS | 41663840 | 41663923 | 41663840 | ID=Msa0851380-mRNA-1:cds;Parent=Msa0851380-mRNA-1 |
| chr5_4 | CDS | 41664748 | 41664881 | 41664748 | ID=Msa0851380-mRNA-1:cds;Parent=Msa0851380-mRNA-1 |
| chr5_4 | CDS | 41666269 | 41666376 | 41666269 | ID=Msa0851380-mRNA-1:cds;Parent=Msa0851380-mRNA-1 |
| chr5_4 | CDS | 41666558 | 41666663 | 41666558 | ID=Msa0851380-mRNA-1:cds;Parent=Msa0851380-mRNA-1 |
| chr5_4 | CDS | 41667418 | 41667477 | 41667418 | ID=Msa0851380-mRNA-1:cds;Parent=Msa0851380-mRNA-1 |
| chr5_4 | CDS | 41667731 | 41667823 | 41667731 | ID=Msa0851380-mRNA-1:cds;Parent=Msa0851380-mRNA-1 |
| chr5_4 | three_prime_UTR | 41667824 | 41668085 | 41667824 | ID=Msa0851380-mRNA-1:three_prime_utr;Parent=Msa0851380-mRNA-1 |
| chr5_4 | three_prime_UTR | 41668147 | 41668189 | 41668147 | ID=Msa0851380-mRNA-1:three_prime_utr;Parent=Msa0851380-mRNA-1 |
| Gene Sequence |
| Protein sequence |
