AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0811660

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0811660 MtrunA17_Chr5g0428091 97.802 273 6 0 1 273 39 311 0.0 563
Msa0811660 MtrunA17_Chr3g0141101 74.909 275 67 2 1 273 51 325 1.01e-154 434
Msa0811660 MtrunA17_Chr4g0049431 66.909 275 89 2 1 273 1 275 2.31e-137 388
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0811660 AT1G58280.1 65.693 274 93 1 1 273 43 316 2.49e-136 387
Msa0811660 AT1G58280.3 65.693 274 93 1 1 273 28 301 4.41e-136 386
Msa0811660 AT1G58280.4 65.693 274 93 1 1 273 27 300 9.06e-136 385
Msa0811660 AT5G64460.4 63.736 273 98 1 1 272 1 273 1.31e-134 382
Msa0811660 AT5G64460.6 63.736 273 98 1 1 272 1 273 1.31e-134 382
Msa0811660 AT5G64460.10 63.736 273 98 1 1 272 1 273 1.31e-134 382
Msa0811660 AT5G64460.2 63.736 273 98 1 1 272 1 273 1.31e-134 382
Msa0811660 AT5G64460.1 63.736 273 98 1 1 272 1 273 1.31e-134 382
Msa0811660 AT5G64460.8 63.736 273 98 1 1 272 1 273 1.31e-134 382
Msa0811660 AT5G64460.3 63.736 273 98 1 1 272 1 273 1.31e-134 382
Msa0811660 AT1G58280.2 60.201 299 93 2 1 273 43 341 4.41e-130 372
Msa0811660 AT2G17280.1 63.534 266 95 2 6 269 5 270 1.68e-129 368
Msa0811660 AT2G17280.2 63.534 266 95 2 6 269 5 270 1.68e-129 368
Msa0811660 AT5G64460.11 62.821 234 86 1 40 272 1 234 3.92e-112 323
Msa0811660 AT5G64460.7 62.821 234 86 1 40 272 1 234 3.92e-112 323
Msa0811660 AT5G64460.9 62.821 234 86 1 40 272 1 234 3.92e-112 323
Msa0811660 AT5G64460.5 62.500 192 71 1 82 272 1 192 5.84e-90 265
Msa0811660 AT1G09935.1 49.187 246 104 2 6 250 3 228 1.25e-78 238
Msa0811660 AT1G09935.2 48.770 244 104 2 6 248 3 226 6.09e-78 236
Msa0811660 AT1G09932.3 44.348 230 113 3 14 242 15 230 4.52e-63 198
Msa0811660 AT1G09932.1 43.033 244 124 3 14 256 15 244 7.22e-63 199
Msa0811660 AT1G09932.2 42.194 237 122 3 21 256 15 237 9.56e-59 188
Msa0811660 AT1G09932.4 37.705 244 112 4 14 256 15 219 3.67e-45 152

Find 95 sgRNAs with CRISPR-Local

Find 377 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACATTTCAGTCTTAATATT+TGG 0.056819 5_3:+40897823 None:intergenic
TCTTCTTTCTTCTCTCTTTC+AGG 0.088309 5_3:+40898154 None:intergenic
TTTAATACCCTTGGTGCTTT+TGG 0.209673 5_3:-40897859 Msa0811660:CDS
CAATGAAAGGATCAATTATT+TGG 0.234060 5_3:+40896232 None:intergenic
ATAGGATTATTCTTGAATTT+AGG 0.248798 5_3:-40901561 Msa0811660:five_prime_UTR
CCATGGTTATTGTGGATAAA+TGG 0.257144 5_3:-40896454 Msa0811660:intron
AAACTTCTTCATGCTTGCTT+TGG 0.292221 5_3:-40901664 Msa0811660:five_prime_UTR
CAAACGGCTGTTGGAGTCTT+TGG 0.301452 5_3:-40898849 Msa0811660:CDS
ACATTTCAGTCTTAATATTT+GGG 0.328655 5_3:+40897824 None:intergenic
AATATTTCAAGGAATCTAAA+TGG 0.329530 5_3:+40901612 None:intergenic
ACAGGTGAAAGAAAATAAAT+TGG 0.333003 5_3:-40896003 Msa0811660:intron
GTATACATTTGCAGTATGAT+TGG 0.341629 5_3:-40896359 Msa0811660:intron
TATCCTGGCAAAATTCCTTA+TGG 0.349742 5_3:-40896314 Msa0811660:CDS
TGGCCGAATTTCAGATTACT+AGG 0.357653 5_3:+40901808 None:intergenic
GAGAAGAAAGAAGAAGTTAC+TGG 0.360840 5_3:-40898145 Msa0811660:CDS
TTGTGGTTTCCCCATTGTTA+AGG 0.383995 5_3:-40900075 Msa0811660:intron
GCAATAAATACCTTAACAAT+GGG 0.391056 5_3:+40900065 None:intergenic
TGACAAAACTATTTATCTCT+TGG 0.391929 5_3:+40901788 None:intergenic
GCTGCCAGCCAAGAGGAGTT+AGG 0.404360 5_3:+40900566 None:intergenic
CATGAAGAAGTTTGAACAAC+AGG 0.414686 5_3:+40901674 None:intergenic
AACCCTAGTAATCTGAAATT+CGG 0.415940 5_3:-40901811 Msa0811660:five_prime_UTR
CTTCTACATTATGAACTCCT+TGG 0.426179 5_3:+40900638 None:intergenic
AATTCCTTATACGCCAGGGG+GGG 0.435087 5_3:-40896082 Msa0811660:intron
CAAGGAGTTCATAATGTAGA+AGG 0.435431 5_3:-40900637 Msa0811660:CDS
TTTAAAATTCCTTATACGCC+AGG 0.435521 5_3:-40896087 Msa0811660:three_prime_UTR
TCTCTAGTCAGTAGCATCAC+TGG 0.439328 5_3:+40896280 None:intergenic
GAGTACCGACACATGTTTCC+TGG 0.441022 5_3:-40898362 Msa0811660:CDS
GAAATATTCTTATGTTTATG+TGG 0.443376 5_3:-40901597 Msa0811660:five_prime_UTR
GAAACATTAATTCAAGGAAC+GGG 0.444728 5_3:-40896259 Msa0811660:three_prime_UTR
CAAAAGCATGTGAAGGCTAT+CGG 0.447198 5_3:-40900121 Msa0811660:CDS
TTCTACATTATGAACTCCTT+GGG 0.448503 5_3:+40900639 None:intergenic
TCCTCTGATGATTGAAAATG+TGG 0.453993 5_3:-40898793 Msa0811660:CDS
AATAAATTGGCAACATATGT+TGG 0.458744 5_3:-40895990 Msa0811660:three_prime_UTR
ACTAGAGAAACATTAATTCA+AGG 0.460914 5_3:-40896265 Msa0811660:exon
GATGCAAACCTAACTCCTCT+TGG 0.468148 5_3:-40900574 Msa0811660:CDS
AAAGAAGAAGTTACTGGTAG+AGG 0.469675 5_3:-40898139 Msa0811660:CDS
GCCAAGTGGTTGAATTTAAG+TGG 0.471630 5_3:+40901696 None:intergenic
AAACCGACGACGACACTTGG+TGG 0.473463 5_3:-40898180 Msa0811660:CDS
AGAGCTTTGCCGAGAGCAAA+TGG 0.480917 5_3:-40898715 Msa0811660:intron
AACTCCTCTTGGCTGGCAGC+AGG 0.481325 5_3:-40900563 Msa0811660:intron
TTTGTGTGTAACTGCAGTTA+TGG 0.482011 5_3:-40901403 Msa0811660:exon
TTGAAACCGACGACGACACT+TGG 0.483801 5_3:-40898183 Msa0811660:CDS
ACTAAACCAGTCTAATGAAA+AGG 0.485573 5_3:+40901464 None:intergenic
ACGGCTGTTGGAGTCTTTGG+TGG 0.485849 5_3:-40898846 Msa0811660:CDS
GCTCTACTGCAACGAATGGT+GGG 0.490909 5_3:+40898733 None:intergenic
ACCACTTAAATTCAACCACT+TGG 0.491707 5_3:-40901697 Msa0811660:five_prime_UTR
TGCAATAAATACCTTAACAA+TGG 0.492075 5_3:+40900064 None:intergenic
GTAGCATCACTGGGAAGATC+CGG 0.492789 5_3:+40896290 None:intergenic
AAAAGCATGTGAAGGCTATC+GGG 0.499129 5_3:-40900120 Msa0811660:CDS
AATTCAACTACCAATTATCC+TGG 0.506226 5_3:-40896329 Msa0811660:CDS
CTGGGAAGATCCGGACCATA+AGG 0.508878 5_3:+40896299 None:intergenic
CGGCTGTTGGAGTCTTTGGT+GGG 0.510510 5_3:-40898845 Msa0811660:CDS
CTCTAGTCAGTAGCATCACT+GGG 0.516578 5_3:+40896281 None:intergenic
TGGCAAAATTCCTTATGGTC+CGG 0.517787 5_3:-40896309 Msa0811660:CDS
TTCTTCTCTTATCACATGGA+TGG 0.518718 5_3:+40898393 None:intergenic
ATAAACATAAGAATATTTCA+AGG 0.521549 5_3:+40901601 None:intergenic
TAATTGTGAACTACGTTCCA+TGG 0.527066 5_3:-40896471 Msa0811660:CDS
ACTACGTTCCATGGTTATTG+TGG 0.532011 5_3:-40896462 Msa0811660:CDS
AGCTCTACTGCAACGAATGG+TGG 0.533100 5_3:+40898732 None:intergenic
CCATAGCAAAACTATTCACC+TGG 0.545933 5_3:-40901346 Msa0811660:intron
TAAAATTCCTTATACGCCAG+GGG 0.546624 5_3:-40896085 Msa0811660:three_prime_UTR
CAAACCTAACTCCTCTTGGC+TGG 0.550658 5_3:-40900570 Msa0811660:CDS
AGAAACATTAATTCAAGGAA+CGG 0.551574 5_3:-40896260 Msa0811660:three_prime_UTR
AGGACAATGCAAACGGCTGT+TGG 0.555089 5_3:-40898858 Msa0811660:CDS
TTAAAATTCCTTATACGCCA+GGG 0.556307 5_3:-40896086 Msa0811660:three_prime_UTR
CCATTTATCCACAATAACCA+TGG 0.562033 5_3:+40896454 None:intergenic
GGCCGAATTTCAGATTACTA+GGG 0.566341 5_3:+40901809 None:intergenic
TTGATCCTTTCATTGATAGT+CGG 0.570538 5_3:-40896224 Msa0811660:three_prime_UTR
ATCATTTCCAAAAGCACCAA+GGG 0.581244 5_3:+40897852 None:intergenic
GCATTGCAGGACAATGCAAA+CGG 0.582434 5_3:-40898865 Msa0811660:intron
ACTCTTCTTGTGTTGCACAA+TGG 0.584834 5_3:-40901501 Msa0811660:five_prime_UTR
TAGTTGATACCATTTGCTCT+CGG 0.586880 5_3:+40898706 None:intergenic
GGTGGGGAAGCAAACACTGA+TGG 0.588462 5_3:-40898828 Msa0811660:CDS
ACAGTTCTTCTCTTATCACA+TGG 0.591715 5_3:+40898389 None:intergenic
CATAAGATAAGTAAGCATCA+TGG 0.594248 5_3:+40900605 None:intergenic
GGCTGTTGGAGTCTTTGGTG+GGG 0.595312 5_3:-40898844 Msa0811660:CDS
GTGTTAAGACTAGAAACTGC+AGG 0.597363 5_3:+40898756 None:intergenic
TTTCCACCAAGTGTCGTCGT+CGG 0.599950 5_3:+40898177 None:intergenic
TACGACCGACTATCAATGAA+AGG 0.610947 5_3:+40896219 None:intergenic
AAAATTCCTTATACGCCAGG+GGG 0.613238 5_3:-40896084 Msa0811660:three_prime_UTR
CTCTACTGCAACGAATGGTG+GGG 0.616274 5_3:+40898734 None:intergenic
AAATCTGCAAAAGCATGTGA+AGG 0.630010 5_3:-40900128 Msa0811660:CDS
CAAAGCTCTACTGCAACGAA+TGG 0.634038 5_3:+40898729 None:intergenic
GCAGTTATGGATACTGCACC+TGG 0.638731 5_3:-40901390 Msa0811660:exon
TCGGTCGTATGAAACAGTCA+TGG 0.642950 5_3:-40896205 Msa0811660:three_prime_UTR
AAATTCCTTATACGCCAGGG+GGG 0.645555 5_3:-40896083 Msa0811660:intron
CCTCTGATGATTGAAAATGT+GGG 0.649662 5_3:-40898792 Msa0811660:CDS
GTTGTGTACACGTAAAGAGA+AGG 0.650810 5_3:-40897914 Msa0811660:CDS
ACTACCTGCTGCCAGCCAAG+AGG 0.650877 5_3:+40900559 None:intergenic
AGTTTGAACAACAGGCCAAG+TGG 0.665774 5_3:+40901682 None:intergenic
AATCATTTCCAAAAGCACCA+AGG 0.666076 5_3:+40897851 None:intergenic
ATACAGGTTAGGCATGCCCA+AGG 0.679711 5_3:-40900655 Msa0811660:intron
CAATTCCAGGAAACATGTGT+CGG 0.682161 5_3:+40898357 None:intergenic
CAATAAATACCTTAACAATG+GGG 0.699556 5_3:+40900066 None:intergenic
AATGGATAGAGACTTTGACC+AGG 0.719679 5_3:+40901372 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATATAGAAAATCATAAA+TGG + chr5_3:40897129-40897148 None:intergenic 10.0%
!!! AATAAAATCATTTTCATATT+AGG - chr5_3:40898596-40898615 Msa0811660:intron 10.0%
!!! TTTTTCTCAAATTTATTTAT+TGG - chr5_3:40899887-40899906 Msa0811660:intron 10.0%
!!! ATTCTCTTTTATAATTTTAA+TGG - chr5_3:40900858-40900877 Msa0811660:intron 10.0%
!! ATAAACATAAGAATATTTCA+AGG + chr5_3:40896236-40896255 None:intergenic 15.0%
!!! ATTTTTAAAACACTTCTAAT+AGG + chr5_3:40896894-40896913 None:intergenic 15.0%
!!! CTGATAATAATTTTAAAAAG+TGG + chr5_3:40897579-40897598 None:intergenic 15.0%
!! ATTCTGATATGATTTAAATT+TGG + chr5_3:40897969-40897988 None:intergenic 15.0%
!! ATGTTTATTACTTTAACATT+TGG - chr5_3:40898888-40898907 Msa0811660:intron 15.0%
!! TTCTCAAATTTATAAGTTAT+AGG + chr5_3:40899227-40899246 None:intergenic 15.0%
!!! AAATGACATTTTGTAAAATA+GGG + chr5_3:40899367-40899386 None:intergenic 15.0%
!!! CTACAAAAATATCTAAAATT+TGG - chr5_3:40899595-40899614 Msa0811660:intron 15.0%
!!! GAAAAATTATATCAGATTTT+TGG + chr5_3:40899873-40899892 None:intergenic 15.0%
!!! TTTCTTTTAATTTTTTCTTG+TGG + chr5_3:40901131-40901150 None:intergenic 15.0%
!!! TACTTTTGAATTCTAAAAAT+AGG - chr5_3:40901188-40901207 Msa0811660:intron 15.0%
!!! TCAATGATTTTTTATTTTTC+AGG - chr5_3:40901700-40901719 Msa0811660:five_prime_UTR 15.0%
!! AATATTTCAAGGAATCTAAA+TGG + chr5_3:40896225-40896244 None:intergenic 20.0%
!! GAAATATTCTTATGTTTATG+TGG - chr5_3:40896237-40896256 Msa0811660:three_prime_UTR 20.0%
!! ATAGGATTATTCTTGAATTT+AGG - chr5_3:40896273-40896292 Msa0811660:exon 20.0%
!!! TTTATCATACTTTTAATGTG+TGG - chr5_3:40896551-40896570 Msa0811660:intron 20.0%
!! TAGTTCATATATAAAATCAG+AGG + chr5_3:40896600-40896619 None:intergenic 20.0%
!! TCTATATGATCAAAGAAATT+AGG - chr5_3:40896665-40896684 Msa0811660:intron 20.0%
!! TAATATTTGAACCGTAATAA+AGG + chr5_3:40896954-40896973 None:intergenic 20.0%
!! TATTACGGTTCAAATATTAT+TGG - chr5_3:40896955-40896974 Msa0811660:intron 20.0%
!! GTTATTGACAATTATTTCAT+GGG + chr5_3:40897457-40897476 None:intergenic 20.0%
!! TGTTATTGACAATTATTTCA+TGG + chr5_3:40897458-40897477 None:intergenic 20.0%
!! TTTATATTCTTTAGATGTCA+TGG - chr5_3:40897646-40897665 Msa0811660:intron 20.0%
!!! TTTTTTCAAGTTGTAGTAAT+TGG + chr5_3:40897916-40897935 None:intergenic 20.0%
!!! TTTAGAATTAACCTCATAAT+AGG - chr5_3:40898357-40898376 Msa0811660:CDS 20.0%
!! AATAAGCTGAAAATAACTTA+CGG - chr5_3:40898659-40898678 Msa0811660:intron 20.0%
!! AAATTTATAAGTTATAGGAG+GGG + chr5_3:40899222-40899241 None:intergenic 20.0%
!! CAAATTTATAAGTTATAGGA+GGG + chr5_3:40899223-40899242 None:intergenic 20.0%
!! TCAAATTTATAAGTTATAGG+AGG + chr5_3:40899224-40899243 None:intergenic 20.0%
!! GAGAAAACAAATTGATTAAA+TGG - chr5_3:40899242-40899261 Msa0811660:intron 20.0%
!!! CAAATGACATTTTGTAAAAT+AGG + chr5_3:40899368-40899387 None:intergenic 20.0%
!!! TTTAGATATTTTTGTAGCAA+TGG + chr5_3:40899592-40899611 None:intergenic 20.0%
!!! CTCAAATTTATTTATTGGTT+TGG - chr5_3:40899892-40899911 Msa0811660:intron 20.0%
!! ACATTTCAGTCTTAATATTT+GGG + chr5_3:40900013-40900032 None:intergenic 20.0%
!!! GTTCTATGTTTTTACTAAAT+TGG - chr5_3:40900359-40900378 Msa0811660:intron 20.0%
!! TATTTGAATAAGATGAAAAC+AGG + chr5_3:40900467-40900486 None:intergenic 20.0%
!! ATCTGATGGTAAATAATAAT+TGG - chr5_3:40900899-40900918 Msa0811660:intron 20.0%
!!! ATCTCCAATATTTTTCATAA+GGG + chr5_3:40901014-40901033 None:intergenic 20.0%
!!! TGGACAAATTGATAAAATTT+TGG - chr5_3:40901317-40901336 Msa0811660:intron 20.0%
!!! TTTTTCAGGAAAAATTATGT+CGG - chr5_3:40901714-40901733 Msa0811660:intron 20.0%
! TGACAAAACTATTTATCTCT+TGG + chr5_3:40896049-40896068 None:intergenic 25.0%
!! TTTTAGTCAATGATCAAACT+CGG - chr5_3:40896076-40896095 Msa0811660:intron 25.0%
! TTAAGGTCAAATTAATTGGT+AGG + chr5_3:40896104-40896123 None:intergenic 25.0%
! TCAGTTAAGGTCAAATTAAT+TGG + chr5_3:40896108-40896127 None:intergenic 25.0%
! TGTGGTAAAAAAATTCAGAT+AGG - chr5_3:40896255-40896274 Msa0811660:three_prime_UTR 25.0%
!!! TTTTTTCCTTTTCATTAGAC+TGG - chr5_3:40896364-40896383 Msa0811660:intron 25.0%
!! TGGTTTTTGATAGAACATTA+TGG + chr5_3:40896837-40896856 None:intergenic 25.0%
! TTAAAACACTTCTAATAGGA+AGG + chr5_3:40896890-40896909 None:intergenic 25.0%
!! TATTTTATGACCTTGTATAC+AGG - chr5_3:40897163-40897182 Msa0811660:intron 25.0%
! AACATGACATTCAAAAGAAT+TGG + chr5_3:40897308-40897327 None:intergenic 25.0%
! TGGAAATATTTGAATATAGC+CGG + chr5_3:40897559-40897578 None:intergenic 25.0%
!!! CACAACTAGTTCAATTTTTT+TGG + chr5_3:40897744-40897763 None:intergenic 25.0%
! CAAAAAAATTGAACTAGTTG+TGG - chr5_3:40897742-40897761 Msa0811660:intron 25.0%
! CAATAAATACCTTAACAATG+GGG + chr5_3:40897771-40897790 None:intergenic 25.0%
! GCAATAAATACCTTAACAAT+GGG + chr5_3:40897772-40897791 None:intergenic 25.0%
! TGCAATAAATACCTTAACAA+TGG + chr5_3:40897773-40897792 None:intergenic 25.0%
! TATTATTGTGATGAGATACA+AGG - chr5_3:40897852-40897871 Msa0811660:CDS 25.0%
! GATACAAGGATTGAATATAA+AGG - chr5_3:40897866-40897885 Msa0811660:CDS 25.0%
! ATTGAATATAAAGGTAGAGT+TGG - chr5_3:40897875-40897894 Msa0811660:CDS 25.0%
! GAAAGTTTAGAAAGTTTCTT+AGG + chr5_3:40898047-40898066 None:intergenic 25.0%
! CAGTAGATTAGAATCAAAAA+AGG - chr5_3:40898450-40898469 Msa0811660:intron 25.0%
! ATAAGTGATTATGACTTAAG+TGG - chr5_3:40898535-40898554 Msa0811660:intron 25.0%
! TGACTTAAGTGGTTATATAT+AGG - chr5_3:40898546-40898565 Msa0811660:intron 25.0%
! GTATTAGTATGATATTGAGA+TGG - chr5_3:40898795-40898814 Msa0811660:CDS 25.0%
! AAATGATTCTTACCACTAAA+AGG + chr5_3:40898828-40898847 None:intergenic 25.0%
! ATAACTAATACTCCTCAATA+TGG + chr5_3:40898856-40898875 None:intergenic 25.0%
!!! AATAAAAGTGCTTCTGTATT+TGG - chr5_3:40898917-40898936 Msa0811660:intron 25.0%
!!! ATAAAAGTGCTTCTGTATTT+GGG - chr5_3:40898918-40898937 Msa0811660:intron 25.0%
! AATCAGAATACTTATGTACA+AGG - chr5_3:40899395-40899414 Msa0811660:intron 25.0%
! CACTATAATTCTCTTAAGTT+AGG - chr5_3:40899767-40899786 Msa0811660:intron 25.0%
!!! TTTATTTATTGGTTTGGTTC+AGG - chr5_3:40899898-40899917 Msa0811660:intron 25.0%
! CACATTTCAGTCTTAATATT+TGG + chr5_3:40900014-40900033 None:intergenic 25.0%
!!! TATTCTAGCATTGATATATG+TGG - chr5_3:40900087-40900106 Msa0811660:CDS 25.0%
!!! ATTCTAGCATTGATATATGT+GGG - chr5_3:40900088-40900107 Msa0811660:CDS 25.0%
! ATCTGACGGTAAAAATTAAA+TGG + chr5_3:40900173-40900192 None:intergenic 25.0%
! AAACCATTAATCTTATCTGA+CGG + chr5_3:40900187-40900206 None:intergenic 25.0%
! AAAACATGAGTTTAAACCAA+TGG + chr5_3:40900314-40900333 None:intergenic 25.0%
! AAGTGCTTATATAAGTAAAG+TGG - chr5_3:40900396-40900415 Msa0811660:intron 25.0%
! ATCTACAAAACTTAATCCAA+AGG - chr5_3:40900503-40900522 Msa0811660:intron 25.0%
!! AAACAGAGGAATTTGAAATT+GGG - chr5_3:40900537-40900556 Msa0811660:intron 25.0%
! AAATTGGGTATTATAAGATG+TGG - chr5_3:40900552-40900571 Msa0811660:intron 25.0%
! ATGAAACACAATTTCAAATC+TGG - chr5_3:40900591-40900610 Msa0811660:CDS 25.0%
! TGAAACACAATTTCAAATCT+GGG - chr5_3:40900592-40900611 Msa0811660:CDS 25.0%
! ATCTTGCATCTTTATAAAAG+AGG - chr5_3:40900655-40900674 Msa0811660:intron 25.0%
! TCAACCCTTATGAAAAATAT+TGG - chr5_3:40901007-40901026 Msa0811660:intron 25.0%
!! CATCTCCAATATTTTTCATA+AGG + chr5_3:40901015-40901034 None:intergenic 25.0%
! GACAATGCATAATATATGTA+AGG - chr5_3:40901083-40901102 Msa0811660:intron 25.0%
!!! CTTTTAATTTTTTCTTGTGG+TGG + chr5_3:40901128-40901147 None:intergenic 25.0%
! ATAGGAAAATTCTTACTCAA+CGG - chr5_3:40901206-40901225 Msa0811660:intron 25.0%
!! ATGAAAGTGTAACATATGTA+GGG + chr5_3:40901297-40901316 None:intergenic 25.0%
!! AATGAAAGTGTAACATATGT+AGG + chr5_3:40901298-40901317 None:intergenic 25.0%
! TACATATGTTACACTTTCAT+TGG - chr5_3:40901297-40901316 Msa0811660:intron 25.0%
! ACTAGAGAAACATTAATTCA+AGG - chr5_3:40901569-40901588 Msa0811660:five_prime_UTR 25.0%
! AGAAACATTAATTCAAGGAA+CGG - chr5_3:40901574-40901593 Msa0811660:five_prime_UTR 25.0%
! CAATGAAAGGATCAATTATT+TGG + chr5_3:40901605-40901624 None:intergenic 25.0%
!!! CAAATTTTGAGATGAAAAGA+TGG - chr5_3:40901798-40901817 Msa0811660:five_prime_UTR 25.0%
! ACAGGTGAAAGAAAATAAAT+TGG - chr5_3:40901831-40901850 Msa0811660:five_prime_UTR 25.0%
! AATAAATTGGCAACATATGT+TGG - chr5_3:40901844-40901863 Msa0811660:five_prime_UTR 25.0%
! TTTTTAACCATATGGTTCAC+AGG - chr5_3:40895993-40896012 Msa0811660:three_prime_UTR 30.0%
! TTTTAACCATATGGTTCACA+GGG - chr5_3:40895994-40896013 Msa0811660:three_prime_UTR 30.0%
! AACCCTAGTAATCTGAAATT+CGG - chr5_3:40896023-40896042 Msa0811660:intron 30.0%
TGGTTAATGAACTTCAGTTA+AGG + chr5_3:40896121-40896140 None:intergenic 30.0%
ACTAAACCAGTCTAATGAAA+AGG + chr5_3:40896373-40896392 None:intergenic 30.0%
ATATAAATTTGCCACAAACC+AGG + chr5_3:40896509-40896528 None:intergenic 30.0%
CAGCATGAAATTCAGTTATA+AGG - chr5_3:40896689-40896708 Msa0811660:intron 30.0%
AAATTTCGCGAAATAATTCC+AGG - chr5_3:40896715-40896734 Msa0811660:intron 30.0%
AATTTCGCGAAATAATTCCA+GGG - chr5_3:40896716-40896735 Msa0811660:intron 30.0%
! AAATGACTTGGAGAAAAACA+TGG + chr5_3:40896857-40896876 None:intergenic 30.0%
CTTCCTTAAAGCTCTTAAAT+CGG + chr5_3:40897002-40897021 None:intergenic 30.0%
GTGTTGAAGTAGTTATATTC+TGG - chr5_3:40897094-40897113 Msa0811660:intron 30.0%
TTCTACATTATGAACTCCTT+GGG + chr5_3:40897198-40897217 None:intergenic 30.0%
CATAAGATAAGTAAGCATCA+TGG + chr5_3:40897232-40897251 None:intergenic 30.0%
! TGTTGTCAAGTATTTCTGTA+TGG - chr5_3:40897324-40897343 Msa0811660:intron 30.0%
GAAGATATTGTTGTAGAGAT+TGG - chr5_3:40897394-40897413 Msa0811660:intron 30.0%
ACAATTATTTCATGGGAAAC+CGG + chr5_3:40897450-40897469 None:intergenic 30.0%
AGTGAGACATATACATGATT+TGG + chr5_3:40897810-40897829 None:intergenic 30.0%
AGTATAATCTTCCCTTCAAA+GGG + chr5_3:40898126-40898145 None:intergenic 30.0%
! TTATACTCCTGCAATTTTGA+CGG - chr5_3:40898139-40898158 Msa0811660:CDS 30.0%
!! TACTACAACTTAGCTCTTTT+GGG + chr5_3:40898383-40898402 None:intergenic 30.0%
!! ATACTACAACTTAGCTCTTT+TGG + chr5_3:40898384-40898403 None:intergenic 30.0%
TAGTATGTAGAGATACTCTA+TGG - chr5_3:40898398-40898417 Msa0811660:CDS 30.0%
!! CTTATTTCTACAAGTTCTCT+AGG + chr5_3:40898645-40898664 None:intergenic 30.0%
!! ATCAACTGTATGACTAGTTT+GGG + chr5_3:40898712-40898731 None:intergenic 30.0%
! AATCAACTGTATGACTAGTT+TGG + chr5_3:40898713-40898732 None:intergenic 30.0%
! AGTTGATTCTAAAAACCAAC+TGG - chr5_3:40898725-40898744 Msa0811660:CDS 30.0%
!! TAAAAGTGCTTCTGTATTTG+GGG - chr5_3:40898919-40898938 Msa0811660:intron 30.0%
AATTCAAACTATTGCATTGC+AGG - chr5_3:40898956-40898975 Msa0811660:intron 30.0%
! GGTATCAACTAGTTTACATT+TGG - chr5_3:40899140-40899159 Msa0811660:intron 30.0%
TTGAAGATGTACTAGTAGAT+AGG + chr5_3:40899179-40899198 None:intergenic 30.0%
TTTGTAAAATAGGGAGGTAA+AGG + chr5_3:40899358-40899377 None:intergenic 30.0%
! TGACATTTTGTAAAATAGGG+AGG + chr5_3:40899364-40899383 None:intergenic 30.0%
!! TCCTGGAATTGATTTTTCAT+TGG - chr5_3:40899489-40899508 Msa0811660:intron 30.0%
ACCAATGAAAAATCAATTCC+AGG + chr5_3:40899493-40899512 None:intergenic 30.0%
TTCTTTCATACCTCATGATA+TGG - chr5_3:40899527-40899546 Msa0811660:intron 30.0%
! AGTTTTCTGTTTAATACCCT+TGG - chr5_3:40899966-40899985 Msa0811660:intron 30.0%
ACAAGATTTGTCAAACTTTC+AGG + chr5_3:40900055-40900074 None:intergenic 30.0%
ATGTGGGAATGATAAATAAC+AGG - chr5_3:40900104-40900123 Msa0811660:CDS 30.0%
! ATAAATAACAGGTGGATTCT+AGG - chr5_3:40900115-40900134 Msa0811660:CDS 30.0%
! TAAATAACAGGTGGATTCTA+GGG - chr5_3:40900116-40900135 Msa0811660:CDS 30.0%
GTAAAAATTAAATGGTCCAC+CGG + chr5_3:40900165-40900184 None:intergenic 30.0%
TTACCGTCAGATAAGATTAA+TGG - chr5_3:40900181-40900200 Msa0811660:intron 30.0%
ATGGTTCACGTTAATAGAAA+AGG + chr5_3:40900295-40900314 None:intergenic 30.0%
TTTCTATTAACGTGAACCAT+TGG - chr5_3:40900295-40900314 Msa0811660:intron 30.0%
! CAAACAGAGGAATTTGAAAT+TGG - chr5_3:40900536-40900555 Msa0811660:intron 30.0%
!! TTGTGTTTCATGTTTGTTGT+AGG + chr5_3:40900582-40900601 None:intergenic 30.0%
TTGCATCTTTATAAAAGAGG+CGG - chr5_3:40900658-40900677 Msa0811660:intron 30.0%
!!! TAACTGGTGGTTCTTTTTTA+AGG + chr5_3:40900709-40900728 None:intergenic 30.0%
GTAAATAATAATTGGTCCAC+CGG - chr5_3:40900907-40900926 Msa0811660:intron 30.0%
! TGTTATTTAGGTGGATTCTA+GGG + chr5_3:40900956-40900975 None:intergenic 30.0%
!! TTGTTATTTAGGTGGATTCT+AGG + chr5_3:40900957-40900976 None:intergenic 30.0%
TAGAATCCACCTAAATAACA+AGG - chr5_3:40900956-40900975 Msa0811660:intron 30.0%
CATAATATATGTAAGGTCCA+GGG - chr5_3:40901090-40901109 Msa0811660:intron 30.0%
!!! TAATTTTTTCTTGTGGTGGA+CGG + chr5_3:40901124-40901143 None:intergenic 30.0%
TAGATCAAACAATGAAGTCA+AGG + chr5_3:40901170-40901189 None:intergenic 30.0%
GTATACATTTGCAGTATGAT+TGG - chr5_3:40901475-40901494 Msa0811660:five_prime_UTR 30.0%
AATTCAACTACCAATTATCC+TGG - chr5_3:40901505-40901524 Msa0811660:five_prime_UTR 30.0%
GAAACATTAATTCAAGGAAC+GGG - chr5_3:40901575-40901594 Msa0811660:five_prime_UTR 30.0%
! TTGATCCTTTCATTGATAGT+CGG - chr5_3:40901610-40901629 Msa0811660:five_prime_UTR 30.0%
! TTTAAAATTCCTTATACGCC+AGG - chr5_3:40901747-40901766 Msa0811660:intron 30.0%
TTAAAATTCCTTATACGCCA+GGG - chr5_3:40901748-40901767 Msa0811660:intron 30.0%
! AAAGATGGAAGTTTTCTTAC+AGG - chr5_3:40901813-40901832 Msa0811660:five_prime_UTR 30.0%
ACCACTTAAATTCAACCACT+TGG - chr5_3:40896137-40896156 Msa0811660:three_prime_UTR 35.0%
CATGAAGAAGTTTGAACAAC+AGG + chr5_3:40896163-40896182 None:intergenic 35.0%
AAACTTCTTCATGCTTGCTT+TGG - chr5_3:40896170-40896189 Msa0811660:three_prime_UTR 35.0%
TTTGTGTGTAACTGCAGTTA+TGG - chr5_3:40896431-40896450 Msa0811660:intron 35.0%
!! ATAGTTTTGCTATGGTGCAA+TGG + chr5_3:40896483-40896502 None:intergenic 35.0%
! AAAACTATTCACCTGGTTTG+TGG - chr5_3:40896495-40896514 Msa0811660:intron 35.0%
TGAAAAGAATTCTAAGTCCC+TGG + chr5_3:40896736-40896755 None:intergenic 35.0%
! GGATCTAGAGTTAAATGACT+TGG + chr5_3:40896869-40896888 None:intergenic 35.0%
ATTTGAACCGTAATAAAGGC+CGG + chr5_3:40896950-40896969 None:intergenic 35.0%
GTTCCGATTTAAGAGCTTTA+AGG - chr5_3:40896996-40897015 Msa0811660:intron 35.0%
AAATCAGACATTGAACTTGC+GGG + chr5_3:40897045-40897064 None:intergenic 35.0%
CAAATCAGACATTGAACTTG+CGG + chr5_3:40897046-40897065 None:intergenic 35.0%
TATGACCTTGTATACAGGTT+AGG - chr5_3:40897168-40897187 Msa0811660:intron 35.0%
CTTCTACATTATGAACTCCT+TGG + chr5_3:40897199-40897218 None:intergenic 35.0%
CAAGGAGTTCATAATGTAGA+AGG - chr5_3:40897197-40897216 Msa0811660:intron 35.0%
! TGTATGGTTTTTGTATCGTG+TGG - chr5_3:40897340-40897359 Msa0811660:intron 35.0%
TCATTGTGATCATTTCAGAG+AGG + chr5_3:40897370-40897389 None:intergenic 35.0%
TTGGTATTAGTATTCTGTCC+TGG - chr5_3:40897413-40897432 Msa0811660:intron 35.0%
!! GTAGCACTGACATTTCATAT+TGG - chr5_3:40897525-40897544 Msa0811660:intron 35.0%
!! ATACTTTGAGGCTCTATAAC+AGG - chr5_3:40897679-40897698 Msa0811660:intron 35.0%
! AAATCTGCAAAAGCATGTGA+AGG - chr5_3:40897706-40897725 Msa0811660:intron 35.0%
TAGTGAACATTTCCCTTTGA+AGG - chr5_3:40898111-40898130 Msa0811660:intron 35.0%
AGTGAACATTTCCCTTTGAA+GGG - chr5_3:40898112-40898131 Msa0811660:intron 35.0%
GAGTATAATCTTCCCTTCAA+AGG + chr5_3:40898127-40898146 None:intergenic 35.0%
ATATTAGGCAATAGAGTGTG+AGG + chr5_3:40898200-40898219 None:intergenic 35.0%
TGACTTCAAGAATAGAACTC+AGG + chr5_3:40898283-40898302 None:intergenic 35.0%
!! TTAATTCTAAAGTCAGCTGC+CGG + chr5_3:40898348-40898367 None:intergenic 35.0%
TAGAATCAAAAAAGGTCGTG+TGG - chr5_3:40898458-40898477 Msa0811660:intron 35.0%
CTAAGCTGTTTATCCAAACA+GGG + chr5_3:40898500-40898519 None:intergenic 35.0%
!! TACTCGATGTTATTTCCAGT+TGG + chr5_3:40898743-40898762 None:intergenic 35.0%
TAACCCACGTATTATACACA+CGG + chr5_3:40898771-40898790 None:intergenic 35.0%
! GATGGAATTTGACCTTTTAG+TGG - chr5_3:40898813-40898832 Msa0811660:CDS 35.0%
ATCATTTGCACTCCATATTG+AGG - chr5_3:40898841-40898860 Msa0811660:CDS 35.0%
TCCTCTGATGATTGAAAATG+TGG - chr5_3:40899041-40899060 Msa0811660:intron 35.0%
CCTCTGATGATTGAAAATGT+GGG - chr5_3:40899042-40899061 Msa0811660:intron 35.0%
! TAGTTGATACCATTTGCTCT+CGG + chr5_3:40899131-40899150 None:intergenic 35.0%
! AAGGCTTTCTTTTGTAATCC+AGG - chr5_3:40899414-40899433 Msa0811660:intron 35.0%
! AGGCTTTCTTTTGTAATCCA+GGG - chr5_3:40899415-40899434 Msa0811660:intron 35.0%
TTCTTCTCTTATCACATGGA+TGG + chr5_3:40899444-40899463 None:intergenic 35.0%
ACAGTTCTTCTCTTATCACA+TGG + chr5_3:40899448-40899467 None:intergenic 35.0%
TCTTCTTTCTTCTCTCTTTC+AGG + chr5_3:40899683-40899702 None:intergenic 35.0%
GAGAAGAAAGAAGAAGTTAC+TGG - chr5_3:40899689-40899708 Msa0811660:intron 35.0%
AAAGAAGAAGTTACTGGTAG+AGG - chr5_3:40899695-40899714 Msa0811660:intron 35.0%
!!! TTTAATACCCTTGGTGCTTT+TGG - chr5_3:40899975-40899994 Msa0811660:intron 35.0%
!! ATCATTTCCAAAAGCACCAA+GGG + chr5_3:40899985-40900004 None:intergenic 35.0%
!! AATCATTTCCAAAAGCACCA+AGG + chr5_3:40899986-40900005 None:intergenic 35.0%
TGGGAATGATAAATAACAGG+TGG - chr5_3:40900107-40900126 Msa0811660:CDS 35.0%
! ACAATTTCAAATCTGGGATG+AGG - chr5_3:40900598-40900617 Msa0811660:CDS 35.0%
! CAATTTCAAATCTGGGATGA+GGG - chr5_3:40900599-40900618 Msa0811660:CDS 35.0%
AAAGAACCACCAGTTAGTAA+TGG - chr5_3:40900713-40900732 Msa0811660:intron 35.0%
TTGTGATGAGACTCAAAACA+AGG - chr5_3:40900794-40900813 Msa0811660:intron 35.0%
TGTGATGAGACTCAAAACAA+GGG - chr5_3:40900795-40900814 Msa0811660:intron 35.0%
AGAAAAGACAAGATTGTGTG+TGG - chr5_3:40900823-40900842 Msa0811660:intron 35.0%
AAACCATTGATCTCATCTGA+TGG - chr5_3:40900885-40900904 Msa0811660:intron 35.0%
TTACCATCAGATGAGATCAA+TGG + chr5_3:40900891-40900910 None:intergenic 35.0%
!! AGAGAAGCACCTTGTTATTT+AGG + chr5_3:40900968-40900987 None:intergenic 35.0%
GCATAATATATGTAAGGTCC+AGG - chr5_3:40901089-40901108 Msa0811660:intron 35.0%
!!! AATTTTTTCTTGTGGTGGAC+GGG + chr5_3:40901123-40901142 None:intergenic 35.0%
TAATTGTGAACTACGTTCCA+TGG - chr5_3:40901363-40901382 Msa0811660:CDS 35.0%
CCATTTATCCACAATAACCA+TGG + chr5_3:40901383-40901402 None:intergenic 35.0%
CCATGGTTATTGTGGATAAA+TGG - chr5_3:40901380-40901399 Msa0811660:CDS 35.0%
! AGGAATTTTGCCAGGATAAT+TGG + chr5_3:40901518-40901537 None:intergenic 35.0%
TATCCTGGCAAAATTCCTTA+TGG - chr5_3:40901520-40901539 Msa0811660:five_prime_UTR 35.0%
TAAAATTCCTTATACGCCAG+GGG - chr5_3:40901749-40901768 Msa0811660:intron 35.0%
GGCCGAATTTCAGATTACTA+GGG + chr5_3:40896028-40896047 None:intergenic 40.0%
TGGCCGAATTTCAGATTACT+AGG + chr5_3:40896029-40896048 None:intergenic 40.0%
GCCAAGTGGTTGAATTTAAG+TGG + chr5_3:40896141-40896160 None:intergenic 40.0%
ACTCTTCTTGTGTTGCACAA+TGG - chr5_3:40896333-40896352 Msa0811660:CDS 40.0%
AATGGATAGAGACTTTGACC+AGG + chr5_3:40896465-40896484 None:intergenic 40.0%
!! CCAGGTGAATAGTTTTGCTA+TGG + chr5_3:40896491-40896510 None:intergenic 40.0%
CCATAGCAAAACTATTCACC+TGG - chr5_3:40896488-40896507 Msa0811660:intron 40.0%
ATCAGAGGTGAGTAAGACTT+TGG + chr5_3:40896585-40896604 None:intergenic 40.0%
CTTATCCTACTAAGTGGAGT+CGG - chr5_3:40896792-40896811 Msa0811660:intron 40.0%
GGAACAAAGCTGCAATTGTA+CGG + chr5_3:40896981-40897000 None:intergenic 40.0%
CGCAAGTTCAATGTCTGATT+TGG - chr5_3:40897044-40897063 Msa0811660:intron 40.0%
TGTCCTGGTATTCCATAATC+CGG - chr5_3:40897428-40897447 Msa0811660:intron 40.0%
AAACCGGATTATGGAATACC+AGG + chr5_3:40897434-40897453 None:intergenic 40.0%
TTTCATGGGAAACCGGATTA+TGG + chr5_3:40897443-40897462 None:intergenic 40.0%
! GCACTGACATTTCATATTGG+AGG - chr5_3:40897528-40897547 Msa0811660:intron 40.0%
TTTCATATTGGAGGTCTGTC+CGG - chr5_3:40897537-40897556 Msa0811660:intron 40.0%
GGTGAAACGCTTATACTTTG+AGG - chr5_3:40897667-40897686 Msa0811660:intron 40.0%
! CAAAAGCATGTGAAGGCTAT+CGG - chr5_3:40897713-40897732 Msa0811660:intron 40.0%
! AAAAGCATGTGAAGGCTATC+GGG - chr5_3:40897714-40897733 Msa0811660:intron 40.0%
TTGTGGTTTCCCCATTGTTA+AGG - chr5_3:40897759-40897778 Msa0811660:intron 40.0%
CAATAGAGTGTGAGGAATCA+TGG + chr5_3:40898192-40898211 None:intergenic 40.0%
ATTCTTGAAGTCACCCTGTT+AGG - chr5_3:40898290-40898309 Msa0811660:intron 40.0%
! AGTTAAGTTGCCTCCTAACA+GGG + chr5_3:40898306-40898325 None:intergenic 40.0%
AAGGCACATTAATCCCTGTT+TGG - chr5_3:40898484-40898503 Msa0811660:intron 40.0%
GCTAAGCTGTTTATCCAAAC+AGG + chr5_3:40898501-40898520 None:intergenic 40.0%
CTACCGTGTGTATAATACGT+GGG - chr5_3:40898765-40898784 Msa0811660:CDS 40.0%
! CCCACATTTTCAATCATCAG+AGG + chr5_3:40899045-40899064 None:intergenic 40.0%
GTGTTAAGACTAGAAACTGC+AGG + chr5_3:40899081-40899100 None:intergenic 40.0%
! GATGTGTCGATATCAAACAC+TGG - chr5_3:40899266-40899285 Msa0811660:intron 40.0%
AACGAAAAACCTTCGATCAG+AGG - chr5_3:40899303-40899322 Msa0811660:intron 40.0%
CAATTCCAGGAAACATGTGT+CGG + chr5_3:40899480-40899499 None:intergenic 40.0%
! TGGTAGAGGACTCAAGTTTT+TGG - chr5_3:40899709-40899728 Msa0811660:intron 40.0%
!! GAGGACTCAAGTTTTTGGAA+TGG - chr5_3:40899714-40899733 Msa0811660:intron 40.0%
GTTGTGTACACGTAAAGAGA+AGG - chr5_3:40899920-40899939 Msa0811660:intron 40.0%
GGTATGACAGGATTGTATGT+GGG + chr5_3:40900248-40900267 None:intergenic 40.0%
AGGTATGACAGGATTGTATG+TGG + chr5_3:40900249-40900268 None:intergenic 40.0%
CCATCAAACAAGTAGTTCAC+CGG + chr5_3:40900929-40900948 None:intergenic 40.0%
!! GAAGCACCTTGTTATTTAGG+TGG + chr5_3:40900965-40900984 None:intergenic 40.0%
ACTACGTTCCATGGTTATTG+TGG - chr5_3:40901372-40901391 Msa0811660:CDS 40.0%
TGGCAAAATTCCTTATGGTC+CGG - chr5_3:40901525-40901544 Msa0811660:five_prime_UTR 40.0%
TACGACCGACTATCAATGAA+AGG + chr5_3:40901618-40901637 None:intergenic 40.0%
AAAATTCCTTATACGCCAGG+GGG - chr5_3:40901750-40901769 Msa0811660:intron 40.0%
! CGTTTTCCCTGTGAACCATA+TGG + chr5_3:40896003-40896022 None:intergenic 45.0%
AGTTTGAACAACAGGCCAAG+TGG + chr5_3:40896155-40896174 None:intergenic 45.0%
CCACTTAGTAGGATAAGGCT+TGG + chr5_3:40896789-40896808 None:intergenic 45.0%
! CCAAGCCTTATCCTACTAAG+TGG - chr5_3:40896786-40896805 Msa0811660:intron 45.0%
CGACTCCACTTAGTAGGATA+AGG + chr5_3:40896794-40896813 None:intergenic 45.0%
CCTTGAACCGGCCTTTATTA+CGG - chr5_3:40896940-40896959 Msa0811660:intron 45.0%
GCATGCCTAACCTGTATACA+AGG + chr5_3:40897176-40897195 None:intergenic 45.0%
GATGCAAACCTAACTCCTCT+TGG - chr5_3:40897260-40897279 Msa0811660:intron 45.0%
ATGTCAGTGCTACATTGAGC+AGG + chr5_3:40897518-40897537 None:intergenic 45.0%
CTCAGAACCGTCAAAATTGC+AGG + chr5_3:40898149-40898168 None:intergenic 45.0%
GGAAGGTGGCACATGATATT+AGG + chr5_3:40898215-40898234 None:intergenic 45.0%
TTACCAACTCTCTCAACACG+TGG + chr5_3:40898236-40898255 None:intergenic 45.0%
! CAGTTAAGTTGCCTCCTAAC+AGG + chr5_3:40898307-40898326 None:intergenic 45.0%
GTGCCAAAAAACTGAACGTC+CGG - chr5_3:40898326-40898345 Msa0811660:intron 45.0%
! GCTCTTTTGGGCCTATTATG+AGG + chr5_3:40898371-40898390 None:intergenic 45.0%
AAAAAAGGTCGTGTGGCACA+AGG - chr5_3:40898465-40898484 Msa0811660:intron 45.0%
CCACGTATTATACACACGGT+AGG + chr5_3:40898767-40898786 None:intergenic 45.0%
CCTACCGTGTGTATAATACG+TGG - chr5_3:40898764-40898783 Msa0811660:CDS 45.0%
GCATTGCAGGACAATGCAAA+CGG - chr5_3:40898969-40898988 Msa0811660:intron 45.0%
CAAAGCTCTACTGCAACGAA+TGG + chr5_3:40899108-40899127 None:intergenic 45.0%
AAACCTTCGATCAGAGGAGT+CGG - chr5_3:40899309-40899328 Msa0811660:intron 45.0%
TGCAGCTAGACCATATCATG+AGG + chr5_3:40899540-40899559 None:intergenic 45.0%
TGAAGAAGGTGAGGTATGAC+AGG + chr5_3:40900260-40900279 None:intergenic 45.0%
CAGAGTGAATGAAGAAGGTG+AGG + chr5_3:40900269-40900288 None:intergenic 45.0%
CTCACCTTCTTCATTCACTC+TGG - chr5_3:40900267-40900286 Msa0811660:intron 45.0%
! TGTTTGAAGCGCTTGTCCTT+TGG + chr5_3:40900522-40900541 None:intergenic 45.0%
GAACCACCAGTTAGTAATGG+TGG - chr5_3:40900716-40900735 Msa0811660:intron 45.0%
TCAAACAAGTAGTTCACCGG+TGG + chr5_3:40900926-40900945 None:intergenic 45.0%
CCGGTGAACTACTTGTTTGA+TGG - chr5_3:40900926-40900945 Msa0811660:intron 45.0%
TACCAACTGAGCTAAGCTCA+CGG + chr5_3:40901061-40901080 None:intergenic 45.0%
! TGAGCTTAGCTCAGTTGGTA+AGG - chr5_3:40901061-40901080 Msa0811660:intron 45.0%
! GGACCATAAGGAATTTTGCC+AGG + chr5_3:40901526-40901545 None:intergenic 45.0%
CTCTAGTCAGTAGCATCACT+GGG + chr5_3:40901556-40901575 None:intergenic 45.0%
TCTCTAGTCAGTAGCATCAC+TGG + chr5_3:40901557-40901576 None:intergenic 45.0%
TCGGTCGTATGAAACAGTCA+TGG - chr5_3:40901629-40901648 Msa0811660:five_prime_UTR 45.0%
AAATTCCTTATACGCCAGGG+GGG - chr5_3:40901751-40901770 Msa0811660:intron 45.0%
GCAGTTATGGATACTGCACC+TGG - chr5_3:40896444-40896463 Msa0811660:intron 50.0%
! TGTAGCCGACTCCACTTAGT+AGG + chr5_3:40896800-40896819 None:intergenic 50.0%
CAACCAGCTGAACCTTGAAC+CGG - chr5_3:40896928-40896947 Msa0811660:intron 50.0%
! CCGTAATAAAGGCCGGTTCA+AGG + chr5_3:40896943-40896962 None:intergenic 50.0%
ATTGAACTTGCGGGAGCTCT+AGG + chr5_3:40897036-40897055 None:intergenic 50.0%
ATACAGGTTAGGCATGCCCA+AGG - chr5_3:40897179-40897198 Msa0811660:intron 50.0%
CAAACCTAACTCCTCTTGGC+TGG - chr5_3:40897264-40897283 Msa0811660:intron 50.0%
TGTCAGTCTCAAGTCTGCGT+CGG - chr5_3:40897607-40897626 Msa0811660:intron 50.0%
CAACTCTCTCAACACGTGGA+AGG + chr5_3:40898232-40898251 None:intergenic 50.0%
CTTCCACGTGTTGAGAGAGT+TGG - chr5_3:40898230-40898249 Msa0811660:intron 50.0%
CTTGAAGTCACCCTGTTAGG+AGG - chr5_3:40898293-40898312 Msa0811660:intron 50.0%
!!! CTGCCGGACGTTCAGTTTTT+TGG + chr5_3:40898332-40898351 None:intergenic 50.0%
AGGACAATGCAAACGGCTGT+TGG - chr5_3:40898976-40898995 Msa0811660:intron 50.0%
CAAACGGCTGTTGGAGTCTT+TGG - chr5_3:40898985-40899004 Msa0811660:intron 50.0%
CTCTACTGCAACGAATGGTG+GGG + chr5_3:40899103-40899122 None:intergenic 50.0%
GCTCTACTGCAACGAATGGT+GGG + chr5_3:40899104-40899123 None:intergenic 50.0%
AGCTCTACTGCAACGAATGG+TGG + chr5_3:40899105-40899124 None:intergenic 50.0%
AGAGCTTTGCCGAGAGCAAA+TGG - chr5_3:40899119-40899138 Msa0811660:intron 50.0%
TATCACATGGATGGAGTCCC+TGG + chr5_3:40899435-40899454 None:intergenic 50.0%
!! GAGTACCGACACATGTTTCC+TGG - chr5_3:40899472-40899491 Msa0811660:intron 50.0%
TTGAAACCGACGACGACACT+TGG - chr5_3:40899651-40899670 Msa0811660:intron 50.0%
! TTTCCACCAAGTGTCGTCGT+CGG + chr5_3:40899660-40899679 None:intergenic 50.0%
AGGGTGAACCACCAAACAAG+TGG - chr5_3:40900135-40900154 Msa0811660:CDS 50.0%
CCACCAAACAAGTGGTTCAC+CGG - chr5_3:40900143-40900162 Msa0811660:intron 50.0%
GGCACCAGAGTGAATGAAGA+AGG + chr5_3:40900274-40900293 None:intergenic 50.0%
AGGACAAGCGCTTCAAACAG+AGG - chr5_3:40900523-40900542 Msa0811660:intron 50.0%
CCACCACCATTACTAACTGG+TGG + chr5_3:40900722-40900741 None:intergenic 50.0%
CCACCAGTTAGTAATGGTGG+TGG - chr5_3:40900719-40900738 Msa0811660:intron 50.0%
CCACCACCACCATTACTAAC+TGG + chr5_3:40900725-40900744 None:intergenic 50.0%
!! CCAGTTAGTAATGGTGGTGG+TGG - chr5_3:40900722-40900741 Msa0811660:intron 50.0%
!! AGTAATGGTGGTGGTGGTAG+TGG - chr5_3:40900728-40900747 Msa0811660:intron 50.0%
ACCAACTGAGCTAAGCTCAC+GGG + chr5_3:40901060-40901079 None:intergenic 50.0%
GTAGCATCACTGGGAAGATC+CGG + chr5_3:40901547-40901566 None:intergenic 50.0%
AATTCCTTATACGCCAGGGG+GGG - chr5_3:40901752-40901771 Msa0811660:five_prime_UTR 50.0%
CTCTCTCAACACGTGGAAGG+TGG + chr5_3:40898229-40898248 None:intergenic 55.0%
ACGGCTGTTGGAGTCTTTGG+TGG - chr5_3:40898988-40899007 Msa0811660:intron 55.0%
CGGCTGTTGGAGTCTTTGGT+GGG - chr5_3:40898989-40899008 Msa0811660:intron 55.0%
GGCTGTTGGAGTCTTTGGTG+GGG - chr5_3:40898990-40899009 Msa0811660:intron 55.0%
GGTGGGGAAGCAAACACTGA+TGG - chr5_3:40899006-40899025 Msa0811660:intron 55.0%
!! CTACCGACTCCTCTGATCGA+AGG + chr5_3:40899315-40899334 None:intergenic 55.0%
AAACCGACGACGACACTTGG+TGG - chr5_3:40899654-40899673 Msa0811660:intron 55.0%
CCGGTGAACCACTTGTTTGG+TGG + chr5_3:40900146-40900165 None:intergenic 55.0%
CCACCGGTGAACCACTTGTT+TGG + chr5_3:40900149-40900168 None:intergenic 55.0%
CCAAACAAGTGGTTCACCGG+TGG - chr5_3:40900146-40900165 Msa0811660:intron 55.0%
!! AATGGTGGTGGTGGTAGTGG+TGG - chr5_3:40900731-40900750 Msa0811660:intron 55.0%
TCCCGTGAGCTTAGCTCAGT+TGG - chr5_3:40901056-40901075 Msa0811660:intron 55.0%
CTGGGAAGATCCGGACCATA+AGG + chr5_3:40901538-40901557 None:intergenic 55.0%
ATTCCTTATACGCCAGGGGG+GGG - chr5_3:40901753-40901772 Msa0811660:five_prime_UTR 55.0%
! AGGCCGGTTCAAGGTTCAGC+TGG + chr5_3:40896934-40896953 None:intergenic 60.0%
!! CTTGCGGGAGCTCTAGGTCA+TGG + chr5_3:40897030-40897049 None:intergenic 60.0%
GCTGCCAGCCAAGAGGAGTT+AGG + chr5_3:40897271-40897290 None:intergenic 60.0%
AACTCCTCTTGGCTGGCAGC+AGG - chr5_3:40897271-40897290 Msa0811660:intron 60.0%
ACTACCTGCTGCCAGCCAAG+AGG + chr5_3:40897278-40897297 None:intergenic 60.0%
!! GGTGGTGGTAGTGGTGGTGA+CGG - chr5_3:40900737-40900756 Msa0811660:intron 60.0%
!! TGGTGACGGTAGAGTCACCG+TGG - chr5_3:40900751-40900770 Msa0811660:intron 60.0%
! GGTGACGGTAGAGTCACCGT+GGG - chr5_3:40900752-40900771 Msa0811660:intron 60.0%
GGTAGAGTCACCGTGGGATG+AGG - chr5_3:40900758-40900777 Msa0811660:intron 60.0%
CCACGTGCATCCTCATCCCA+CGG + chr5_3:40900771-40900790 None:intergenic 60.0%
TTCCTTATACGCCAGGGGGG+GGG - chr5_3:40901754-40901773 Msa0811660:five_prime_UTR 60.0%
CCGTGGGATGAGGATGCACG+TGG - chr5_3:40900768-40900787 Msa0811660:intron 65.0%
GGTGGACGGGATTCGAACCC+TGG + chr5_3:40901110-40901129 None:intergenic 65.0%
TCCTTATACGCCAGGGGGGG+GGG - chr5_3:40901755-40901774 Msa0811660:five_prime_UTR 65.0%
GGGGGGGGGGGAACATATGT+AGG - chr5_3:40901772-40901791 Msa0811660:five_prime_UTR 65.0%
CCTTATACGCCAGGGGGGGG+GGG - chr5_3:40901756-40901775 Msa0811660:five_prime_UTR 70.0%
CTTATACGCCAGGGGGGGGG+GGG - chr5_3:40901757-40901776 Msa0811660:five_prime_UTR 70.0%
TTATACGCCAGGGGGGGGGG+GGG - chr5_3:40901758-40901777 Msa0811660:five_prime_UTR 70.0%
CCCCCCCCCCCTGGCGTATA+AGG + chr5_3:40901759-40901778 None:intergenic 75.0%
TATACGCCAGGGGGGGGGGG+GGG - chr5_3:40901759-40901778 Msa0811660:five_prime_UTR 75.0%
! ATACGCCAGGGGGGGGGGGG+GGG - chr5_3:40901760-40901779 Msa0811660:five_prime_UTR 80.0%
! ATGTTCCCCCCCCCCCCCCC+TGG + chr5_3:40901768-40901787 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 40895989 40901867 40895989 ID=Msa0811660;Name=Msa0811660
chr5_3 mRNA 40895989 40901867 40895989 ID=Msa0811660-mRNA-1;Parent=Msa0811660;Name=Msa0811660-mRNA-1;_AED=0.23;_eAED=0.23;_QI=439|1|1|1|0.8|0.63|11|232|273
chr5_3 exon 40895989 40896021 40895989 ID=Msa0811660-mRNA-1:exon:12646;Parent=Msa0811660-mRNA-1
chr5_3 exon 40896084 40896367 40896084 ID=Msa0811660-mRNA-1:exon:12645;Parent=Msa0811660-mRNA-1
chr5_3 exon 40896455 40896499 40896455 ID=Msa0811660-mRNA-1:exon:12644;Parent=Msa0811660-mRNA-1
chr5_3 exon 40897817 40897936 40897817 ID=Msa0811660-mRNA-1:exon:12643;Parent=Msa0811660-mRNA-1
chr5_3 exon 40898121 40898206 40898121 ID=Msa0811660-mRNA-1:exon:12642;Parent=Msa0811660-mRNA-1
chr5_3 exon 40898346 40898420 40898346 ID=Msa0811660-mRNA-1:exon:12641;Parent=Msa0811660-mRNA-1
chr5_3 exon 40898716 40898878 40898716 ID=Msa0811660-mRNA-1:exon:12640;Parent=Msa0811660-mRNA-1
chr5_3 exon 40900076 40900155 40900076 ID=Msa0811660-mRNA-1:exon:12639;Parent=Msa0811660-mRNA-1
chr5_3 exon 40900564 40900671 40900564 ID=Msa0811660-mRNA-1:exon:12638;Parent=Msa0811660-mRNA-1
chr5_3 exon 40901347 40901729 40901347 ID=Msa0811660-mRNA-1:exon:12637;Parent=Msa0811660-mRNA-1
chr5_3 exon 40901752 40901867 40901752 ID=Msa0811660-mRNA-1:exon:12636;Parent=Msa0811660-mRNA-1
chr5_3 five_prime_UTR 40901752 40901867 40901752 ID=Msa0811660-mRNA-1:five_prime_utr;Parent=Msa0811660-mRNA-1
chr5_3 five_prime_UTR 40901407 40901729 40901407 ID=Msa0811660-mRNA-1:five_prime_utr;Parent=Msa0811660-mRNA-1
chr5_3 CDS 40901347 40901406 40901347 ID=Msa0811660-mRNA-1:cds;Parent=Msa0811660-mRNA-1
chr5_3 CDS 40900564 40900671 40900564 ID=Msa0811660-mRNA-1:cds;Parent=Msa0811660-mRNA-1
chr5_3 CDS 40900076 40900155 40900076 ID=Msa0811660-mRNA-1:cds;Parent=Msa0811660-mRNA-1
chr5_3 CDS 40898716 40898878 40898716 ID=Msa0811660-mRNA-1:cds;Parent=Msa0811660-mRNA-1
chr5_3 CDS 40898346 40898420 40898346 ID=Msa0811660-mRNA-1:cds;Parent=Msa0811660-mRNA-1
chr5_3 CDS 40898121 40898206 40898121 ID=Msa0811660-mRNA-1:cds;Parent=Msa0811660-mRNA-1
chr5_3 CDS 40897817 40897936 40897817 ID=Msa0811660-mRNA-1:cds;Parent=Msa0811660-mRNA-1
chr5_3 CDS 40896455 40896499 40896455 ID=Msa0811660-mRNA-1:cds;Parent=Msa0811660-mRNA-1
chr5_3 CDS 40896283 40896367 40896283 ID=Msa0811660-mRNA-1:cds;Parent=Msa0811660-mRNA-1
chr5_3 three_prime_UTR 40896084 40896282 40896084 ID=Msa0811660-mRNA-1:three_prime_utr;Parent=Msa0811660-mRNA-1
chr5_3 three_prime_UTR 40895989 40896021 40895989 ID=Msa0811660-mRNA-1:three_prime_utr;Parent=Msa0811660-mRNA-1
Gene Sequence

>Msa0811660

ATGGATACTGCACCTGGTCAAAGTCTCTATCCATTGCACCATAGCAAAACTATTCACCTGGTTAGGCATGCCCAAGGAGTTCATAATGTAGAAGGAGAAAAGAACCATGATGCTTACTTATCTTATGATTTTTTTGATGCAAACCTAACTCCTCTTGGCTGGCAGCAGGTTGAAAATCTGCAAAAGCATGTGAAGGCTATCGGGCTTTCCAAAAAAATTGAACTAGTTGTGGTTTCCCCATTGTTAAGGACAATGCAAACGGCTGTTGGAGTCTTTGGTGGGGAAGCAAACACTGATGGAGTTAATGAATCTCCTCTGATGATTGAAAATGTGGGAAACAGTGATCATCCTGCAGTTTCTAGTCTTAACACCCCACCATTCGTTGCAGTAGAGCTTTGCCGAGAGCAAATGGGACTCCATCCATGTGATAAGAGAAGAACTGTCAGCGAGTACCGACACATGTTTCCTGGAATTGATTTTTCATTGATTGAAACCGACGACGACACTTGGTGGAAACCTGAAAGAGAGAAGAAAGAAGAAGTTACTGGTAGAGGACTCAAGTTTTTGGAATGGTTGTGTACACGTAAAGAGAAGGAGATAGCTGTTGTTACACACAGCAGTTTTCTGTTTAATACCCTTGGTGCTTTTGGAAATGATTGTCACCCAAATATTAAGACTGAAATGTGTGCACATTTTGCTAATTGTGAACTACGTTCCATGGTTATTGTGGATAAATGTATGATTGGATCGAATAATTCAACTACCAATTATCCTGGCAAAATTCCTTATGGTCCGGATCTTCCCAGTGATGCTACTGACTAG
Protein sequence

>Msa0811660

MDTAPGQSLYPLHHSKTIHLVRHAQGVHNVEGEKNHDAYLSYDFFDANLTPLGWQQVENLQKHVKAIGLSKKIELVVVSPLLRTMQTAVGVFGGEANTDGVNESPLMIENVGNSDHPAVSSLNTPPFVAVELCREQMGLHPCDKRRTVSEYRHMFPGIDFSLIETDDDTWWKPEREKKEEVTGRGLKFLEWLCTRKEKEIAVVTHSSFLFNTLGAFGNDCHPNIKTEMCAHFANCELRSMVIVDKCMIGSNNSTTNYPGKIPYGPDLPSDATD*