Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0774020 | sp|Q8GY96|PGM_ARATH | 67.722 | 158 | 51 | 0 | 41 | 198 | 5 | 162 | 2.21e-80 | 244 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0774020 | G7K609 | 85.714 | 196 | 23 | 1 | 3 | 198 | 11 | 201 | 8.60e-115 | 336 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0057740 | Msa0774020 | 0.834572 | 2.772969e-56 | -8.615850e-47 |
| Msa0103060 | Msa0774020 | 0.827780 | 1.294698e-54 | -8.615850e-47 |
| Msa0606680 | Msa0774020 | 0.827778 | 1.296020e-54 | -8.615850e-47 |
| Msa0677110 | Msa0774020 | 0.817999 | 2.463665e-52 | -8.615850e-47 |
| Msa0721420 | Msa0774020 | 0.801062 | 1.074942e-48 | -8.615850e-47 |
| Msa0736930 | Msa0774020 | 0.800539 | 1.374560e-48 | -8.615850e-47 |
| Msa0766880 | Msa0774020 | 0.834555 | 2.801810e-56 | -8.615850e-47 |
| Msa0774020 | Msa0793060 | 0.828448 | 8.941482e-55 | -8.615850e-47 |
| Msa0774020 | Msa0804930 | 0.808701 | 2.720762e-50 | -8.615850e-47 |
| Msa0774020 | Msa0811660 | 0.822574 | 2.202932e-53 | -8.615850e-47 |
| Msa0774020 | Msa0833910 | 0.813813 | 2.117171e-51 | -8.615850e-47 |
| Msa0774020 | Msa0834160 | 0.813213 | 2.867893e-51 | -8.615850e-47 |
| Msa0774020 | Msa0929820 | 0.803594 | 3.235711e-49 | -8.615850e-47 |
| Msa0774020 | Msa1033230 | 0.818962 | 1.490209e-52 | -8.615850e-47 |
| Msa0774020 | Msa1057320 | 0.822439 | 2.368004e-53 | -8.615850e-47 |
| Msa0774020 | Msa1102200 | 0.807555 | 4.772920e-50 | -8.615850e-47 |
| Msa0774020 | Msa1124440 | 0.811741 | 6.014965e-51 | -8.615850e-47 |
| Msa0774020 | Msa1132540 | 0.800107 | 1.683074e-48 | -8.615850e-47 |
| Msa0774020 | Msa1138600 | 0.831013 | 2.122977e-55 | -8.615850e-47 |
| Msa0774020 | Msa1168130 | 0.804817 | 1.800394e-49 | -8.615850e-47 |
| Msa0774020 | Msa1173410 | 0.828961 | 6.717301e-55 | -8.615850e-47 |
| Msa0774020 | Msa1195860 | 0.817954 | 2.522838e-52 | -8.615850e-47 |
| Msa0774020 | Msa1198420 | 0.825713 | 4.034508e-54 | -8.615850e-47 |
| Msa0774020 | Msa1199690 | 0.821249 | 4.462985e-53 | -8.615850e-47 |
| Msa0774020 | Msa1309910 | 0.806636 | 7.471204e-50 | -8.615850e-47 |
| Msa0774020 | Msa1342400 | 0.804506 | 2.090307e-49 | -8.615850e-47 |
| Msa0774020 | Msa1364520 | 0.800956 | 1.130083e-48 | -8.615850e-47 |
| Msa0774020 | Msa1368180 | 0.806632 | 7.485345e-50 | -8.615850e-47 |
| Msa0774020 | Msa1385580 | 0.808217 | 3.452715e-50 | -8.615850e-47 |
| Msa0774020 | Msa1385940 | 0.809287 | 2.038550e-50 | -8.615850e-47 |
| Msa0216010 | Msa0774020 | 0.809681 | 1.677916e-50 | -8.615850e-47 |
| Msa0216560 | Msa0774020 | 0.802896 | 4.514069e-49 | -8.615850e-47 |
| Msa0369750 | Msa0774020 | 0.800639 | 1.311485e-48 | -8.615850e-47 |
| Msa0372350 | Msa0774020 | 0.804188 | 2.435912e-49 | -8.615850e-47 |
| Msa0377460 | Msa0774020 | 0.818529 | 1.869016e-52 | -8.615850e-47 |
| Msa0426860 | Msa0774020 | 0.814925 | 1.201930e-51 | -8.615850e-47 |
| Msa0426890 | Msa0774020 | 0.811525 | 6.701106e-51 | -8.615850e-47 |
| Msa0456480 | Msa0774020 | 0.849828 | 2.516058e-60 | -8.615850e-47 |
| Msa0473320 | Msa0774020 | 0.826079 | 3.303492e-54 | -8.615850e-47 |
| Msa0256170 | Msa0774020 | 0.817795 | 2.739818e-52 | -8.615850e-47 |
| Msa0293000 | Msa0774020 | 0.804559 | 2.038424e-49 | -8.615850e-47 |
| Msa0295840 | Msa0774020 | 0.810387 | 1.182437e-50 | -8.615850e-47 |
| Msa0301460 | Msa0774020 | 0.808129 | 3.603885e-50 | -8.615850e-47 |
| Msa0517400 | Msa0774020 | 0.813613 | 2.341961e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0774020 | MtrunA17_Chr5g0428091 | 96.364 | 165 | 6 | 0 | 34 | 198 | 37 | 201 | 4.98e-117 | 335 |
| Msa0774020 | MtrunA17_Chr3g0141101 | 75.439 | 171 | 38 | 2 | 36 | 202 | 51 | 221 | 1.86e-89 | 266 |
| Msa0774020 | MtrunA17_Chr4g0049431 | 64.848 | 165 | 57 | 1 | 36 | 199 | 1 | 165 | 6.37e-76 | 230 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0774020 | AT1G58280.4 | 65.922 | 179 | 61 | 0 | 20 | 198 | 11 | 189 | 7.30e-86 | 256 |
| Msa0774020 | AT1G58280.1 | 69.939 | 163 | 49 | 0 | 36 | 198 | 43 | 205 | 2.39e-84 | 253 |
| Msa0774020 | AT1G58280.3 | 69.939 | 163 | 49 | 0 | 36 | 198 | 28 | 190 | 3.03e-84 | 252 |
| Msa0774020 | AT2G17280.1 | 67.722 | 158 | 51 | 0 | 41 | 198 | 5 | 162 | 2.24e-81 | 244 |
| Msa0774020 | AT2G17280.2 | 67.722 | 158 | 51 | 0 | 41 | 198 | 5 | 162 | 2.24e-81 | 244 |
| Msa0774020 | AT1G58280.2 | 60.638 | 188 | 49 | 1 | 36 | 198 | 43 | 230 | 2.07e-78 | 239 |
| Msa0774020 | AT5G64460.4 | 61.963 | 163 | 62 | 0 | 36 | 198 | 1 | 163 | 9.67e-75 | 227 |
| Msa0774020 | AT5G64460.6 | 61.963 | 163 | 62 | 0 | 36 | 198 | 1 | 163 | 9.67e-75 | 227 |
| Msa0774020 | AT5G64460.10 | 61.963 | 163 | 62 | 0 | 36 | 198 | 1 | 163 | 9.67e-75 | 227 |
| Msa0774020 | AT5G64460.2 | 61.963 | 163 | 62 | 0 | 36 | 198 | 1 | 163 | 9.67e-75 | 227 |
| Msa0774020 | AT5G64460.1 | 61.963 | 163 | 62 | 0 | 36 | 198 | 1 | 163 | 9.67e-75 | 227 |
| Msa0774020 | AT5G64460.8 | 61.963 | 163 | 62 | 0 | 36 | 198 | 1 | 163 | 9.67e-75 | 227 |
| Msa0774020 | AT5G64460.3 | 61.963 | 163 | 62 | 0 | 36 | 198 | 1 | 163 | 9.67e-75 | 227 |
| Msa0774020 | AT5G64460.11 | 59.677 | 124 | 50 | 0 | 75 | 198 | 1 | 124 | 2.50e-52 | 169 |
| Msa0774020 | AT5G64460.7 | 59.677 | 124 | 50 | 0 | 75 | 198 | 1 | 124 | 2.50e-52 | 169 |
| Msa0774020 | AT5G64460.9 | 59.677 | 124 | 50 | 0 | 75 | 198 | 1 | 124 | 2.50e-52 | 169 |
| Msa0774020 | AT1G09935.1 | 48.718 | 156 | 60 | 1 | 44 | 199 | 6 | 141 | 1.98e-42 | 143 |
| Msa0774020 | AT1G09935.2 | 48.718 | 156 | 60 | 1 | 44 | 199 | 6 | 141 | 2.23e-42 | 143 |
| Msa0774020 | AT1G09932.3 | 41.722 | 151 | 74 | 2 | 49 | 199 | 15 | 151 | 6.63e-37 | 129 |
| Msa0774020 | AT1G09932.1 | 41.722 | 151 | 74 | 2 | 49 | 199 | 15 | 151 | 1.15e-36 | 129 |
| Msa0774020 | AT1G09932.2 | 40.278 | 144 | 72 | 2 | 56 | 199 | 15 | 144 | 9.77e-33 | 119 |
| Msa0774020 | AT5G64460.5 | 57.317 | 82 | 35 | 0 | 117 | 198 | 1 | 82 | 1.48e-30 | 112 |
| Msa0774020 | AT1G09932.4 | 40.323 | 124 | 60 | 2 | 49 | 172 | 15 | 124 | 4.20e-24 | 95.9 |
Find 40 sgRNAs with CRISPR-Local
Find 172 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAACGGCTGTTGGAGTCTT+TGG | 0.301452 | 5_2:-49542323 | Msa0774020:CDS |
| TTCTTTCATACCTCATGATA+TGG | 0.320256 | 5_2:-49541755 | Msa0774020:CDS |
| TTGTGGTTTCCCCATTGTTA+AGG | 0.383995 | 5_2:-49543525 | Msa0774020:intron |
| GCAATAAATACCTTAACAAT+GGG | 0.391056 | 5_2:+49543515 | None:intergenic |
| GCTGCCAGCCAAGAGGAGTT+AGG | 0.404360 | 5_2:+49544070 | None:intergenic |
| CAAGGAGTTCATAATGTAGA+AGG | 0.435431 | 5_2:-49544141 | Msa0774020:CDS |
| GAGTACCGACACATGTTTCC+TGG | 0.441022 | 5_2:-49541810 | Msa0774020:CDS |
| CAAAAGCATGTGAAGGCTAT+CGG | 0.447198 | 5_2:-49543571 | Msa0774020:CDS |
| TCCTCTGATGATTGAAAATG+TGG | 0.453993 | 5_2:-49542267 | Msa0774020:CDS |
| GATGCAAACCTAACTCCTCT+TGG | 0.468148 | 5_2:-49544078 | Msa0774020:CDS |
| AGAGCTTTGCCGAGAGCAAA+TGG | 0.480917 | 5_2:-49542189 | Msa0774020:intron |
| AACTCCTCTTGGCTGGCAGC+AGG | 0.481325 | 5_2:-49544067 | Msa0774020:intron |
| ACGGCTGTTGGAGTCTTTGG+TGG | 0.485849 | 5_2:-49542320 | Msa0774020:CDS |
| GCTCTACTGCAACGAATGGT+GGG | 0.490909 | 5_2:+49542207 | None:intergenic |
| TGCAATAAATACCTTAACAA+TGG | 0.492075 | 5_2:+49543514 | None:intergenic |
| AAAAGCATGTGAAGGCTATC+GGG | 0.499129 | 5_2:-49543570 | Msa0774020:CDS |
| CGGCTGTTGGAGTCTTTGGT+GGG | 0.510510 | 5_2:-49542319 | Msa0774020:CDS |
| TTCTTCTCTTATCACATGGA+TGG | 0.518718 | 5_2:+49541841 | None:intergenic |
| AGCTCTACTGCAACGAATGG+TGG | 0.533100 | 5_2:+49542206 | None:intergenic |
| TTTATCATACCATTTGCTCT+CGG | 0.546796 | 5_2:+49542180 | None:intergenic |
| CAAACCTAACTCCTCTTGGC+TGG | 0.550658 | 5_2:-49544074 | Msa0774020:CDS |
| AGGACAATGCAAACGGCTGT+TGG | 0.555089 | 5_2:-49542332 | Msa0774020:CDS |
| CCATAGCAAAACTATTCACC+TGG | 0.568160 | 5_2:-49544551 | Msa0774020:intron |
| GCATTGCAGGACAATGCAAA+CGG | 0.582434 | 5_2:-49542339 | Msa0774020:intron |
| GGTGGGGAAGCAAACACTGA+TGG | 0.588462 | 5_2:-49542302 | Msa0774020:CDS |
| ACAGTTCTTCTCTTATCACA+TGG | 0.591715 | 5_2:+49541837 | None:intergenic |
| CATAAGATAAGTAAGCATCA+TGG | 0.594248 | 5_2:+49544109 | None:intergenic |
| GGCTGTTGGAGTCTTTGGTG+GGG | 0.595312 | 5_2:-49542318 | Msa0774020:CDS |
| GTGTTAAGACTAGAAACTGC+AGG | 0.597363 | 5_2:+49542230 | None:intergenic |
| CTCTACTGCAACGAATGGTG+GGG | 0.616274 | 5_2:+49542208 | None:intergenic |
| AAATCTGCAAAAGCATGTGA+AGG | 0.630010 | 5_2:-49543578 | Msa0774020:CDS |
| CAAAGCTCTACTGCAACGAA+TGG | 0.634038 | 5_2:+49542203 | None:intergenic |
| GCAGTTATGGATACTGCACC+TGG | 0.638731 | 5_2:-49544595 | Msa0774020:CDS |
| ATGCAGGTTAGGCATGCGCA+AGG | 0.647445 | 5_2:-49544159 | Msa0774020:intron |
| CCTCTGATGATTGAAAATGT+GGG | 0.649662 | 5_2:-49542266 | Msa0774020:CDS |
| ACTACCTGCTGCCAGCCAAG+AGG | 0.650877 | 5_2:+49544063 | None:intergenic |
| TGCAGCTAGACCATATCATG+AGG | 0.682125 | 5_2:+49541745 | None:intergenic |
| CAATTCCAGGAAACATGTGT+CGG | 0.682161 | 5_2:+49541805 | None:intergenic |
| CAATAAATACCTTAACAATG+GGG | 0.699556 | 5_2:+49543516 | None:intergenic |
| AATGGATAGAGACTTTGACC+AGG | 0.719679 | 5_2:+49544577 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CTGATTATAATTTAAAAAAG+TGG | + | chr5_2:49542715-49542734 | None:intergenic | 15.0% |
| !! | ATTCTGATATGATTTAAATT+TGG | + | chr5_2:49543119-49543138 | None:intergenic | 15.0% |
| !!! | AATCAAATCATTTTCATATT+AGG | - | chr5_2:49543721-49543740 | Msa0774020:intron | 15.0% |
| !! | ATGTTTATTACTTTAACATT+TGG | - | chr5_2:49544014-49544033 | Msa0774020:intron | 15.0% |
| !!! | AAATGACATTTTGTAAAATA+GGG | + | chr5_2:49544519-49544538 | None:intergenic | 15.0% |
| !!! | TTTTTTCTTTTTCATTAGAC+TGG | - | chr5_2:49541759-49541778 | Msa0774020:CDS | 20.0% |
| !! | TAGTCAATATATAAAATCAG+AGG | + | chr5_2:49542008-49542027 | None:intergenic | 20.0% |
| !! | ACAATTATTTCATGAGAAAT+CGG | + | chr5_2:49542547-49542566 | None:intergenic | 20.0% |
| !! | TTTATGTTCTTTAAATGTCA+TGG | - | chr5_2:49542796-49542815 | Msa0774020:intron | 20.0% |
| !!! | TCTATTTTTTTTTCAAGTTG+TGG | + | chr5_2:49543073-49543092 | None:intergenic | 20.0% |
| !!! | TTTAGAATTAACCTCATAAT+AGG | - | chr5_2:49543506-49543525 | Msa0774020:intron | 20.0% |
| !! | CAGTATATTAGAATGAAAAA+AGG | - | chr5_2:49543599-49543618 | Msa0774020:intron | 20.0% |
| !! | AATAAGCTGAAAATAACTTA+CGG | - | chr5_2:49543784-49543803 | Msa0774020:intron | 20.0% |
| !!! | TATTAGTATTGATATTGAGA+TGG | - | chr5_2:49543921-49543940 | Msa0774020:intron | 20.0% |
| !! | TTCTCAGATTTATAAGTTAT+AGG | + | chr5_2:49544379-49544398 | None:intergenic | 20.0% |
| !!! | CAAATGACATTTTGTAAAAT+AGG | + | chr5_2:49544520-49544539 | None:intergenic | 20.0% |
| !! | AATCAAAATACTTATGTACA+AGG | - | chr5_2:49544547-49544566 | Msa0774020:intron | 20.0% |
| !!! | AAATTGTGCTTTTTAATGTG+TGG | - | chr5_2:49541959-49541978 | Msa0774020:intron | 25.0% |
| ! | TCTATGCAATCAAAAAGATT+AGG | - | chr5_2:49542073-49542092 | Msa0774020:intron | 25.0% |
| ! | AAATATCGTGAAACAATTCT+AGG | - | chr5_2:49542124-49542143 | Msa0774020:intron | 25.0% |
| ! | AATATCGTGAAACAATTCTA+GGG | - | chr5_2:49542125-49542144 | Msa0774020:intron | 25.0% |
| ! | AACATGACATTCAAAAGAAT+TGG | + | chr5_2:49542404-49542423 | None:intergenic | 25.0% |
| ! | ATGATATTGTTGTAGAGATT+TGG | - | chr5_2:49542491-49542510 | Msa0774020:intron | 25.0% |
| !!! | CACAACTAGTTCAATTTTTT+TGG | + | chr5_2:49542894-49542913 | None:intergenic | 25.0% |
| ! | CAAAAAAATTGAACTAGTTG+TGG | - | chr5_2:49542892-49542911 | Msa0774020:intron | 25.0% |
| ! | CAATAAATACCTTAACAATG+GGG | + | chr5_2:49542921-49542940 | None:intergenic | 25.0% |
| ! | GCAATAAATACCTTAACAAT+GGG | + | chr5_2:49542922-49542941 | None:intergenic | 25.0% |
| ! | TGCAATAAATACCTTAACAA+TGG | + | chr5_2:49542923-49542942 | None:intergenic | 25.0% |
| ! | TATTATTGTGATGAGATACA+AGG | - | chr5_2:49543002-49543021 | Msa0774020:intron | 25.0% |
| ! | GATACAAGGATTGAATATAA+AGG | - | chr5_2:49543016-49543035 | Msa0774020:intron | 25.0% |
| ! | ATTGAATATAAAGGTAGAGT+TGG | - | chr5_2:49543025-49543044 | Msa0774020:intron | 25.0% |
| !!! | TTTTTTCAAGTTGTGGTAAT+TGG | + | chr5_2:49543066-49543085 | None:intergenic | 25.0% |
| ! | GAAAGTTTAGAAAGTTTCTT+AGG | + | chr5_2:49543197-49543216 | None:intergenic | 25.0% |
| ! | TAAGTTCAGTTATTGTAAGT+AGG | - | chr5_2:49543223-49543242 | Msa0774020:intron | 25.0% |
| ! | ATAAGTGATTATGACTTAAG+TGG | - | chr5_2:49543660-49543679 | Msa0774020:intron | 25.0% |
| ! | TGACTTAAGTGGTTATATAT+AGG | - | chr5_2:49543671-49543690 | Msa0774020:intron | 25.0% |
| !! | ATCAAATGTATGACTAGTTA+GGG | + | chr5_2:49543837-49543856 | None:intergenic | 25.0% |
| !! | AATCAAATGTATGACTAGTT+AGG | + | chr5_2:49543838-49543857 | None:intergenic | 25.0% |
| !! | ATTTGATTCTAAAAACCAAC+TGG | - | chr5_2:49543850-49543869 | Msa0774020:intron | 25.0% |
| ! | AAATGATTCTTACCACTAAA+AGG | + | chr5_2:49543954-49543973 | None:intergenic | 25.0% |
| ! | ATAACTAATACTCCTCAATA+TGG | + | chr5_2:49543982-49544001 | None:intergenic | 25.0% |
| !!! | AATAAAAGTGCTTCTGTATT+TGG | - | chr5_2:49544043-49544062 | Msa0774020:intron | 25.0% |
| !!! | ATAAAAGTGCTTCTGTATTT+GGG | - | chr5_2:49544044-49544063 | Msa0774020:intron | 25.0% |
| ! | AGATTTATAAGTTATAGGAG+GGG | + | chr5_2:49544374-49544393 | None:intergenic | 25.0% |
| ! | CAGATTTATAAGTTATAGGA+GGG | + | chr5_2:49544375-49544394 | None:intergenic | 25.0% |
| ! | TCAGATTTATAAGTTATAGG+AGG | + | chr5_2:49544376-49544395 | None:intergenic | 25.0% |
| ! | GAGAAAACAAATTGATTGAA+TGG | - | chr5_2:49544394-49544413 | Msa0774020:intron | 25.0% |
| ATATAAATTTGCCACATACC+AGG | + | chr5_2:49541904-49541923 | None:intergenic | 30.0% | |
| TATAAAATCAGAGGTGAGAA+AGG | + | chr5_2:49541999-49542018 | None:intergenic | 30.0% | |
| CAGCATGAAATTCAGTTATA+AGG | - | chr5_2:49542098-49542117 | Msa0774020:intron | 30.0% | |
| GTGTTAAAGTAGTTGTATTC+TGG | - | chr5_2:49542191-49542210 | Msa0774020:CDS | 30.0% | |
| CATAAGATAAGTAAGCATCA+TGG | + | chr5_2:49542328-49542347 | None:intergenic | 30.0% | |
| ! | TGTTGTCAAGTATTTCTGAA+TGG | - | chr5_2:49542420-49542439 | Msa0774020:intron | 30.0% |
| ! | TGAATGGTTTTTGTATTGTG+TGG | - | chr5_2:49542436-49542455 | Msa0774020:intron | 30.0% |
| AGTGAGACATATACATGATT+TGG | + | chr5_2:49542960-49542979 | None:intergenic | 30.0% | |
| TAGTTAACATTTCCCTTTGA+AGG | - | chr5_2:49543261-49543280 | Msa0774020:intron | 30.0% | |
| AGTTAACATTTCCCTTTGAA+GGG | - | chr5_2:49543262-49543281 | Msa0774020:intron | 30.0% | |
| AGTTTAATCTTCCCTTCAAA+GGG | + | chr5_2:49543276-49543295 | None:intergenic | 30.0% | |
| ! | TTAAACTCCTGCAATTTTGA+CGG | - | chr5_2:49543289-49543308 | Msa0774020:intron | 30.0% |
| !! | TTAATTCTAAAGTCAGCATC+GGG | + | chr5_2:49543497-49543516 | None:intergenic | 30.0% |
| !! | GTTAATTCTAAAGTCAGCAT+CGG | + | chr5_2:49543498-49543517 | None:intergenic | 30.0% |
| !! | TACTACAACTTAGCTCTTTT+GGG | + | chr5_2:49543532-49543551 | None:intergenic | 30.0% |
| !! | ATACTACAACTTAGCTCTTT+TGG | + | chr5_2:49543533-49543552 | None:intergenic | 30.0% |
| TAGTATGTAGAGATACTCTA+TGG | - | chr5_2:49543547-49543566 | Msa0774020:CDS | 30.0% | |
| ATCACTTATGCAATCAAACA+GGG | + | chr5_2:49543649-49543668 | None:intergenic | 30.0% | |
| AATCACTTATGCAATCAAAC+AGG | + | chr5_2:49543650-49543669 | None:intergenic | 30.0% | |
| !! | CTTATTTCTACAAGTTCTCT+AGG | + | chr5_2:49543770-49543789 | None:intergenic | 30.0% |
| !! | TAAAAGTGCTTCTGTATTTG+GGG | - | chr5_2:49544045-49544064 | Msa0774020:intron | 30.0% |
| AATTCAAACTAATGCATTGC+AGG | - | chr5_2:49544082-49544101 | Msa0774020:CDS | 30.0% | |
| TTTATCATACCATTTGCTCT+CGG | + | chr5_2:49544257-49544276 | None:intergenic | 30.0% | |
| ! | TGAATCAACTGGTTTACATT+TGG | - | chr5_2:49544292-49544311 | Msa0774020:intron | 30.0% |
| TTGAAGATGTACTAGTAGAT+AGG | + | chr5_2:49544331-49544350 | None:intergenic | 30.0% | |
| TTTGTAAAATAGGGAGGTAA+AGG | + | chr5_2:49544510-49544529 | None:intergenic | 30.0% | |
| ! | TGACATTTTGTAAAATAGGG+AGG | + | chr5_2:49544516-49544535 | None:intergenic | 30.0% |
| !! | TCCTGGAATTGATTTTTCAT+TGG | - | chr5_2:49544641-49544660 | Msa0774020:CDS | 30.0% |
| ACCAATGAAAAATCAATTCC+AGG | + | chr5_2:49544645-49544664 | None:intergenic | 30.0% | |
| TTCTTTCATACCTCATGATA+TGG | - | chr5_2:49544679-49544698 | Msa0774020:CDS | 30.0% | |
| ! | TTTTTGTGTGACTGCAGTTA+TGG | - | chr5_2:49541826-49541845 | Msa0774020:CDS | 35.0% |
| !! | ATAGTTTTGCTATGGTGCAA+TGG | + | chr5_2:49541878-49541897 | None:intergenic | 35.0% |
| AAAACTATTCACCTGGTATG+TGG | - | chr5_2:49541890-49541909 | Msa0774020:intron | 35.0% | |
| ! | TGTTTTGTGACCTTATATGC+AGG | - | chr5_2:49542259-49542278 | Msa0774020:CDS | 35.0% |
| CAAGGAGTTCATAATGTAGA+AGG | - | chr5_2:49542293-49542312 | Msa0774020:CDS | 35.0% | |
| TTGGTATTAGTATTCTGTCC+TGG | - | chr5_2:49542510-49542529 | Msa0774020:intron | 35.0% | |
| TTTCATGAGAAATCGGACTA+TGG | + | chr5_2:49542540-49542559 | None:intergenic | 35.0% | |
| !! | ATACTTTGAGGCTCTATAAC+AGG | - | chr5_2:49542829-49542848 | Msa0774020:intron | 35.0% |
| ! | AAATCTGCAAAAGCATGTGA+AGG | - | chr5_2:49542856-49542875 | Msa0774020:intron | 35.0% |
| GAGTTTAATCTTCCCTTCAA+AGG | + | chr5_2:49543277-49543296 | None:intergenic | 35.0% | |
| TAGAATGAAAAAAGGTCGTG+TGG | - | chr5_2:49543607-49543626 | Msa0774020:intron | 35.0% | |
| !! | TACTCGATGTTATTTCCAGT+TGG | + | chr5_2:49543868-49543887 | None:intergenic | 35.0% |
| TAACCCACGTATTATACACA+CGG | + | chr5_2:49543896-49543915 | None:intergenic | 35.0% | |
| ! | GATGGAATTTGACCTTTTAG+TGG | - | chr5_2:49543939-49543958 | Msa0774020:intron | 35.0% |
| ATCATTTGCACTCCATATTG+AGG | - | chr5_2:49543967-49543986 | Msa0774020:intron | 35.0% | |
| TCCTCTGATGATTGAAAATG+TGG | - | chr5_2:49544167-49544186 | Msa0774020:intron | 35.0% | |
| CCTCTGATGATTGAAAATGT+GGG | - | chr5_2:49544168-49544187 | Msa0774020:intron | 35.0% | |
| ! | AAGGCTTTCTTTTGTAATCC+AGG | - | chr5_2:49544566-49544585 | Msa0774020:CDS | 35.0% |
| ! | AGGCTTTCTTTTGTAATCCA+GGG | - | chr5_2:49544567-49544586 | Msa0774020:CDS | 35.0% |
| TTCTTCTCTTATCACATGGA+TGG | + | chr5_2:49544596-49544615 | None:intergenic | 35.0% | |
| ACAGTTCTTCTCTTATCACA+TGG | + | chr5_2:49544600-49544619 | None:intergenic | 35.0% | |
| AATGGATAGAGACTTTGACC+AGG | + | chr5_2:49541860-49541879 | None:intergenic | 40.0% | |
| !! | CCAGGTGAATAGTTTTGCTA+TGG | + | chr5_2:49541886-49541905 | None:intergenic | 40.0% |
| CCATAGCAAAACTATTCACC+TGG | - | chr5_2:49541883-49541902 | Msa0774020:intron | 40.0% | |
| TGTGACCTTATATGCAGGTT+AGG | - | chr5_2:49542264-49542283 | Msa0774020:CDS | 40.0% | |
| TGACCATTGTGATCACTTCA+GGG | + | chr5_2:49542469-49542488 | None:intergenic | 40.0% | |
| TTGACCATTGTGATCACTTC+AGG | + | chr5_2:49542470-49542489 | None:intergenic | 40.0% | |
| AAATCGGACTATGGAATACC+AGG | + | chr5_2:49542531-49542550 | None:intergenic | 40.0% | |
| !! | GCAGTACCGACATTTCATAT+CGG | - | chr5_2:49542622-49542641 | Msa0774020:intron | 40.0% |
| ACACCTCCGATATGAAATGT+CGG | + | chr5_2:49542631-49542650 | None:intergenic | 40.0% | |
| CATTGACATACATGAGACAC+CGG | + | chr5_2:49542656-49542675 | None:intergenic | 40.0% | |
| ATGTCTGACATCGATACATG+TGG | - | chr5_2:49542673-49542692 | Msa0774020:intron | 40.0% | |
| !! | ATAATCAGTGTCGACATGTC+AGG | - | chr5_2:49542727-49542746 | Msa0774020:intron | 40.0% |
| GGTGAAACGCTTATACTTTG+AGG | - | chr5_2:49542817-49542836 | Msa0774020:intron | 40.0% | |
| ! | CAAAAGCATGTGAAGGCTAT+CGG | - | chr5_2:49542863-49542882 | Msa0774020:intron | 40.0% |
| ! | AAAAGCATGTGAAGGCTATC+GGG | - | chr5_2:49542864-49542883 | Msa0774020:intron | 40.0% |
| TTGTGGTTTCCCCATTGTTA+AGG | - | chr5_2:49542909-49542928 | Msa0774020:intron | 40.0% | |
| ATATTAGGCGATAGAGTGTG+AGG | + | chr5_2:49543350-49543369 | None:intergenic | 40.0% | |
| TGACTTCAAGAATAGAGCTC+AGG | + | chr5_2:49543433-49543452 | None:intergenic | 40.0% | |
| ATTCTTGAAGTCACCCTGTT+AGG | - | chr5_2:49543440-49543459 | Msa0774020:intron | 40.0% | |
| ! | AGTTAAGTTGCCTCCTAACA+GGG | + | chr5_2:49543456-49543475 | None:intergenic | 40.0% |
| CTACCGTGTGTATAATACGT+GGG | - | chr5_2:49543890-49543909 | Msa0774020:intron | 40.0% | |
| ! | CCCACATTTTCAATCATCAG+AGG | + | chr5_2:49544171-49544190 | None:intergenic | 40.0% |
| GTGTTAAGACTAGAAACTGC+AGG | + | chr5_2:49544207-49544226 | None:intergenic | 40.0% | |
| ! | GTGTCGATGATTGAATCAAC+TGG | - | chr5_2:49544281-49544300 | Msa0774020:intron | 40.0% |
| ! | GATGTGTCGATATCAAACAC+TGG | - | chr5_2:49544418-49544437 | Msa0774020:intron | 40.0% |
| AACGAAAAACCTTCGATCAG+AGG | - | chr5_2:49544455-49544474 | Msa0774020:intron | 40.0% | |
| CAATTCCAGGAAACATGTGT+CGG | + | chr5_2:49544632-49544651 | None:intergenic | 40.0% | |
| ATCAGAGGTGAGAAAGGCTT+TGG | + | chr5_2:49541993-49542012 | None:intergenic | 45.0% | |
| GCATGCCTAACCTGCATATA+AGG | + | chr5_2:49542272-49542291 | None:intergenic | 45.0% | |
| GATGCAAACCTAACTCCTCT+TGG | - | chr5_2:49542356-49542375 | Msa0774020:intron | 45.0% | |
| ! | GTACCGACATTTCATATCGG+AGG | - | chr5_2:49542625-49542644 | Msa0774020:intron | 45.0% |
| ! | TTTCATATCGGAGGTGTGTC+CGG | - | chr5_2:49542634-49542653 | Msa0774020:intron | 45.0% |
| CTCAGAACCGTCAAAATTGC+AGG | + | chr5_2:49543299-49543318 | None:intergenic | 45.0% | |
| CGATAGAGTGTGAGGAATCA+TGG | + | chr5_2:49543342-49543361 | None:intergenic | 45.0% | |
| GGAAGGTGGCACATGATATT+AGG | + | chr5_2:49543365-49543384 | None:intergenic | 45.0% | |
| TTACCAACTCTCTCAACACG+TGG | + | chr5_2:49543386-49543405 | None:intergenic | 45.0% | |
| ! | CAGTTAAGTTGCCTCCTAAC+AGG | + | chr5_2:49543457-49543476 | None:intergenic | 45.0% |
| ! | GCTCTTTTGGGCCTATTATG+AGG | + | chr5_2:49543520-49543539 | None:intergenic | 45.0% |
| AAAAAAGGTCGTGTGGCACA+AGG | - | chr5_2:49543614-49543633 | Msa0774020:intron | 45.0% | |
| CCACGTATTATACACACGGT+AGG | + | chr5_2:49543892-49543911 | None:intergenic | 45.0% | |
| CCTACCGTGTGTATAATACG+TGG | - | chr5_2:49543889-49543908 | Msa0774020:intron | 45.0% | |
| GCATTGCAGGACAATGCAAA+CGG | - | chr5_2:49544095-49544114 | Msa0774020:CDS | 45.0% | |
| CAAAGCTCTACTGCAACGAA+TGG | + | chr5_2:49544234-49544253 | None:intergenic | 45.0% | |
| AAACCTTCGATCAGAGGAGT+CGG | - | chr5_2:49544461-49544480 | Msa0774020:intron | 45.0% | |
| TGCAGCTAGACCATATCATG+AGG | + | chr5_2:49544692-49544711 | None:intergenic | 45.0% | |
| GCAGTTATGGATACTGCACC+TGG | - | chr5_2:49541839-49541858 | Msa0774020:CDS | 50.0% | |
| CAAACCTAACTCCTCTTGGC+TGG | - | chr5_2:49542360-49542379 | Msa0774020:intron | 50.0% | |
| CCATTGTGATCACTTCAGGG+AGG | + | chr5_2:49542466-49542485 | None:intergenic | 50.0% | |
| CCTCCCTGAAGTGATCACAA+TGG | - | chr5_2:49542463-49542482 | Msa0774020:intron | 50.0% | |
| ATGTCGGTACTGCATTGAGC+AGG | + | chr5_2:49542615-49542634 | None:intergenic | 50.0% | |
| TTCGATGTCCATGTCTGCGT+CGG | - | chr5_2:49542757-49542776 | Msa0774020:intron | 50.0% | |
| ATGAATCACCGACGCAGACA+TGG | + | chr5_2:49542768-49542787 | None:intergenic | 50.0% | |
| CAACTCTCTCAACACGTGGA+AGG | + | chr5_2:49543382-49543401 | None:intergenic | 50.0% | |
| CTTCCACGTGTTGAGAGAGT+TGG | - | chr5_2:49543380-49543399 | Msa0774020:intron | 50.0% | |
| CTTGAAGTCACCCTGTTAGG+AGG | - | chr5_2:49543443-49543462 | Msa0774020:intron | 50.0% | |
| !!! | GCATCGGGCGTTCAGTTTTT+TGG | + | chr5_2:49543482-49543501 | None:intergenic | 50.0% |
| AGGACAATGCAAACGGCTGT+TGG | - | chr5_2:49544102-49544121 | Msa0774020:CDS | 50.0% | |
| CAAACGGCTGTTGGAGTCTT+TGG | - | chr5_2:49544111-49544130 | Msa0774020:CDS | 50.0% | |
| CTCTACTGCAACGAATGGTG+GGG | + | chr5_2:49544229-49544248 | None:intergenic | 50.0% | |
| GCTCTACTGCAACGAATGGT+GGG | + | chr5_2:49544230-49544249 | None:intergenic | 50.0% | |
| AGCTCTACTGCAACGAATGG+TGG | + | chr5_2:49544231-49544250 | None:intergenic | 50.0% | |
| AGAGCTTTGCCGAGAGCAAA+TGG | - | chr5_2:49544245-49544264 | Msa0774020:intron | 50.0% | |
| TATCACATGGATGGAGTCCC+TGG | + | chr5_2:49544587-49544606 | None:intergenic | 50.0% | |
| !! | GAGTACCGACACATGTTTCC+TGG | - | chr5_2:49544624-49544643 | Msa0774020:CDS | 50.0% |
| ATGCAGGTTAGGCATGCGCA+AGG | - | chr5_2:49542275-49542294 | Msa0774020:CDS | 55.0% | |
| CTCTCTCAACACGTGGAAGG+TGG | + | chr5_2:49543379-49543398 | None:intergenic | 55.0% | |
| ACGGCTGTTGGAGTCTTTGG+TGG | - | chr5_2:49544114-49544133 | Msa0774020:CDS | 55.0% | |
| CGGCTGTTGGAGTCTTTGGT+GGG | - | chr5_2:49544115-49544134 | Msa0774020:CDS | 55.0% | |
| GGCTGTTGGAGTCTTTGGTG+GGG | - | chr5_2:49544116-49544135 | Msa0774020:CDS | 55.0% | |
| GGTGGGGAAGCAAACACTGA+TGG | - | chr5_2:49544132-49544151 | Msa0774020:CDS | 55.0% | |
| !! | CTACCGACTCCTCTGATCGA+AGG | + | chr5_2:49544467-49544486 | None:intergenic | 55.0% |
| GCTGCCAGCCAAGAGGAGTT+AGG | + | chr5_2:49542367-49542386 | None:intergenic | 60.0% | |
| AACTCCTCTTGGCTGGCAGC+AGG | - | chr5_2:49542367-49542386 | Msa0774020:intron | 60.0% | |
| ACTACCTGCTGCCAGCCAAG+AGG | + | chr5_2:49542374-49542393 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 49541740 | 49544716 | 49541740 | ID=Msa0774020;Name=Msa0774020 |
| chr5_2 | mRNA | 49541740 | 49544716 | 49541740 | ID=Msa0774020-mRNA-1;Parent=Msa0774020;Name=Msa0774020-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|1|0.6|1|1|1|5|0|215 |
| chr5_2 | exon | 49544552 | 49544716 | 49544552 | ID=Msa0774020-mRNA-1:exon:14856;Parent=Msa0774020-mRNA-1 |
| chr5_2 | exon | 49544068 | 49544175 | 49544068 | ID=Msa0774020-mRNA-1:exon:14855;Parent=Msa0774020-mRNA-1 |
| chr5_2 | exon | 49543526 | 49543605 | 49543526 | ID=Msa0774020-mRNA-1:exon:14854;Parent=Msa0774020-mRNA-1 |
| chr5_2 | exon | 49542190 | 49542352 | 49542190 | ID=Msa0774020-mRNA-1:exon:14853;Parent=Msa0774020-mRNA-1 |
| chr5_2 | exon | 49541740 | 49541868 | 49541740 | ID=Msa0774020-mRNA-1:exon:14852;Parent=Msa0774020-mRNA-1 |
| chr5_2 | CDS | 49544552 | 49544716 | 49544552 | ID=Msa0774020-mRNA-1:cds;Parent=Msa0774020-mRNA-1 |
| chr5_2 | CDS | 49544068 | 49544175 | 49544068 | ID=Msa0774020-mRNA-1:cds;Parent=Msa0774020-mRNA-1 |
| chr5_2 | CDS | 49543526 | 49543605 | 49543526 | ID=Msa0774020-mRNA-1:cds;Parent=Msa0774020-mRNA-1 |
| chr5_2 | CDS | 49542190 | 49542352 | 49542190 | ID=Msa0774020-mRNA-1:cds;Parent=Msa0774020-mRNA-1 |
| chr5_2 | CDS | 49541740 | 49541868 | 49541740 | ID=Msa0774020-mRNA-1:cds;Parent=Msa0774020-mRNA-1 |
| Gene Sequence |
| Protein sequence |
