Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0812700 | XP_003615587.1 | 92.881 | 604 | 43 | 0 | 1 | 604 | 1 | 604 | 0.0 | 1168 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0812700 | sp|A7LXU3|BGH3B_BACO1 | 30.650 | 646 | 372 | 18 | 12 | 602 | 35 | 659 | 3.30e-80 | 272 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0812700 | G7K6A7 | 92.881 | 604 | 43 | 0 | 1 | 604 | 1 | 604 | 0.0 | 1168 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0734020 | Msa0812700 | 0.811821 | 5.779020e-51 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0812700 | MtrunA17_Chr5g0429581 | 92.881 | 604 | 43 | 0 | 1 | 604 | 1 | 604 | 0.0 | 1168 |
Msa0812700 | MtrunA17_Chr5g0429541 | 89.238 | 604 | 51 | 1 | 1 | 604 | 1 | 590 | 0.0 | 1115 |
Msa0812700 | MtrunA17_Chr3g0104081 | 74.585 | 602 | 151 | 2 | 1 | 602 | 18 | 617 | 0.0 | 942 |
Msa0812700 | MtrunA17_Chr6g0461191 | 54.651 | 602 | 260 | 5 | 5 | 601 | 28 | 621 | 0.0 | 681 |
Msa0812700 | MtrunA17_Chr6g0461211 | 54.774 | 597 | 265 | 4 | 5 | 600 | 28 | 620 | 0.0 | 667 |
Msa0812700 | MtrunA17_Chr3g0118971 | 53.833 | 600 | 272 | 4 | 5 | 603 | 28 | 623 | 0.0 | 667 |
Msa0812700 | MtrunA17_Chr6g0461221 | 54.104 | 597 | 269 | 4 | 5 | 600 | 29 | 621 | 0.0 | 666 |
Msa0812700 | MtrunA17_Chr2g0292341 | 54.606 | 597 | 266 | 4 | 5 | 600 | 30 | 622 | 0.0 | 665 |
Msa0812700 | MtrunA17_Chr6g0461231 | 53.411 | 601 | 267 | 5 | 5 | 600 | 28 | 620 | 0.0 | 656 |
Msa0812700 | MtrunA17_Chr7g0253561 | 53.177 | 598 | 275 | 4 | 5 | 601 | 4 | 597 | 0.0 | 653 |
Msa0812700 | MtrunA17_Chr7g0253551 | 51.016 | 443 | 209 | 2 | 5 | 447 | 29 | 463 | 1.20e-161 | 470 |
Msa0812700 | MtrunA17_Chr5g0425531 | 26.180 | 657 | 364 | 25 | 5 | 603 | 50 | 643 | 1.06e-40 | 158 |
Msa0812700 | MtrunA17_Chr3g0115601 | 26.061 | 660 | 360 | 26 | 5 | 604 | 44 | 635 | 1.75e-37 | 148 |
Msa0812700 | MtrunA17_Chr5g0425471 | 26.690 | 577 | 342 | 22 | 86 | 603 | 86 | 640 | 3.47e-37 | 147 |
Msa0812700 | MtrunA17_Chr5g0425431 | 25.617 | 648 | 376 | 25 | 5 | 603 | 48 | 638 | 5.87e-37 | 147 |
Msa0812700 | MtrunA17_Chr7g0269871 | 26.445 | 571 | 326 | 25 | 93 | 602 | 86 | 623 | 2.11e-36 | 145 |
Msa0812700 | MtrunA17_Chr5g0425451 | 25.772 | 648 | 375 | 26 | 5 | 603 | 50 | 640 | 2.55e-36 | 145 |
Msa0812700 | MtrunA17_Chr4g0050591 | 26.568 | 606 | 342 | 24 | 5 | 573 | 54 | 593 | 2.28e-34 | 139 |
Msa0812700 | MtrunA17_Chr1g0194841 | 25.569 | 571 | 332 | 23 | 93 | 602 | 81 | 619 | 1.46e-32 | 133 |
Msa0812700 | MtrunA17_Chr2g0278761 | 26.923 | 546 | 339 | 23 | 85 | 592 | 90 | 613 | 9.42e-31 | 128 |
Msa0812700 | MtrunA17_Chr2g0294751 | 25.565 | 575 | 345 | 24 | 86 | 604 | 77 | 624 | 2.48e-29 | 123 |
Msa0812700 | MtrunA17_Chr1g0207281 | 24.915 | 586 | 352 | 26 | 85 | 608 | 89 | 648 | 1.47e-28 | 121 |
Msa0812700 | MtrunA17_Chr5g0411571 | 25.000 | 628 | 333 | 25 | 5 | 573 | 42 | 590 | 5.08e-28 | 119 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0812700 | AT3G47000.1 | 69.231 | 598 | 180 | 4 | 4 | 600 | 9 | 603 | 0.0 | 864 |
Msa0812700 | AT3G47040.4 | 66.722 | 601 | 196 | 3 | 4 | 603 | 9 | 606 | 0.0 | 847 |
Msa0812700 | AT3G47010.1 | 66.389 | 601 | 198 | 3 | 4 | 603 | 10 | 607 | 0.0 | 845 |
Msa0812700 | AT3G47010.2 | 66.223 | 601 | 198 | 4 | 4 | 603 | 10 | 606 | 0.0 | 840 |
Msa0812700 | AT3G47040.1 | 64.058 | 626 | 196 | 4 | 4 | 603 | 9 | 631 | 0.0 | 831 |
Msa0812700 | AT3G47050.1 | 66.889 | 601 | 187 | 5 | 4 | 600 | 9 | 601 | 0.0 | 820 |
Msa0812700 | AT3G47040.2 | 61.830 | 634 | 205 | 6 | 4 | 603 | 9 | 639 | 0.0 | 796 |
Msa0812700 | AT5G04885.2 | 54.515 | 598 | 266 | 5 | 4 | 600 | 46 | 638 | 0.0 | 666 |
Msa0812700 | AT5G04885.3 | 54.515 | 598 | 266 | 5 | 4 | 600 | 29 | 621 | 0.0 | 665 |
Msa0812700 | AT5G04885.1 | 54.515 | 598 | 266 | 5 | 4 | 600 | 29 | 621 | 0.0 | 665 |
Msa0812700 | AT3G47000.3 | 70.362 | 442 | 130 | 1 | 4 | 445 | 9 | 449 | 0.0 | 662 |
Msa0812700 | AT3G47010.4 | 67.873 | 442 | 141 | 1 | 4 | 445 | 10 | 450 | 0.0 | 642 |
Msa0812700 | AT3G47040.3 | 67.421 | 442 | 143 | 1 | 4 | 445 | 9 | 449 | 0.0 | 639 |
Msa0812700 | AT3G47000.2 | 69.626 | 428 | 127 | 3 | 174 | 600 | 1 | 426 | 0.0 | 634 |
Msa0812700 | AT5G20950.2 | 52.429 | 597 | 278 | 5 | 5 | 600 | 26 | 617 | 0.0 | 627 |
Msa0812700 | AT5G20950.3 | 52.429 | 597 | 278 | 5 | 5 | 600 | 104 | 695 | 0.0 | 627 |
Msa0812700 | AT5G20950.1 | 52.429 | 597 | 278 | 5 | 5 | 600 | 26 | 617 | 0.0 | 627 |
Msa0812700 | AT3G47010.3 | 65.661 | 431 | 144 | 3 | 174 | 603 | 1 | 428 | 0.0 | 613 |
Msa0812700 | AT5G20940.1 | 51.414 | 601 | 282 | 6 | 2 | 600 | 29 | 621 | 0.0 | 604 |
Msa0812700 | AT3G62710.1 | 46.423 | 629 | 286 | 14 | 5 | 600 | 38 | 648 | 0.0 | 530 |
Msa0812700 | AT3G47050.2 | 67.109 | 377 | 117 | 2 | 4 | 377 | 9 | 381 | 0.0 | 530 |
Msa0812700 | AT1G02640.1 | 26.724 | 580 | 333 | 24 | 86 | 604 | 80 | 628 | 7.20e-35 | 141 |
Msa0812700 | AT5G64570.1 | 25.645 | 659 | 358 | 27 | 5 | 604 | 59 | 644 | 2.29e-32 | 133 |
Msa0812700 | AT3G19620.1 | 24.578 | 651 | 377 | 30 | 5 | 603 | 41 | 629 | 2.41e-31 | 130 |
Msa0812700 | AT5G09730.1 | 25.000 | 612 | 343 | 21 | 5 | 573 | 49 | 587 | 1.48e-30 | 127 |
Msa0812700 | AT5G49360.1 | 24.409 | 635 | 374 | 26 | 12 | 602 | 56 | 628 | 3.45e-30 | 126 |
Msa0812700 | AT5G64570.3 | 25.284 | 617 | 353 | 24 | 5 | 582 | 59 | 606 | 1.95e-28 | 120 |
Msa0812700 | AT1G78060.1 | 25.940 | 532 | 328 | 21 | 86 | 573 | 74 | 583 | 3.17e-28 | 120 |
Msa0812700 | AT5G10560.1 | 24.775 | 666 | 375 | 27 | 5 | 604 | 42 | 647 | 3.59e-28 | 120 |
Msa0812700 | AT5G64570.2 | 26.962 | 497 | 302 | 22 | 146 | 604 | 13 | 486 | 9.39e-27 | 115 |
Find 163 sgRNAs with CRISPR-Local
Find 277 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CCCTTATTCCCTCTTGGTTA+TGG | 0.150094 | 5_3:-43012195 | Msa0812700:CDS |
AACATGACTTCTTATGTTTC+AGG | 0.155153 | 5_3:-43014821 | Msa0812700:CDS |
ACAATTTCATCTCCGTTAAA+TGG | 0.168311 | 5_3:+43012465 | None:intergenic |
TTCTTAGCAGTTGCACTATT+TGG | 0.179068 | 5_3:+43015502 | None:intergenic |
CCTTATTCCCTCTTGGTTAT+GGG | 0.218882 | 5_3:-43012194 | Msa0812700:CDS |
GGAACAAAGTTCATAAATTA+AGG | 0.234620 | 5_3:-43015891 | Msa0812700:five_prime_UTR |
CCCATAACCAAGAGGGAATA+AGG | 0.250774 | 5_3:+43012194 | None:intergenic |
GGAATCACAGATGTTATCTT+TGG | 0.262824 | 5_3:-43012312 | Msa0812700:CDS |
AGCAAAGATCTGTCAGTTAA+AGG | 0.273779 | 5_3:+43013750 | None:intergenic |
CATGAATTCCCTCCCTTATC+AGG | 0.289482 | 5_3:+43012225 | None:intergenic |
TAGTAACAGAACGTTCAATT+TGG | 0.293059 | 5_3:+43015678 | None:intergenic |
GATGAATTATGTCAACCTTA+TGG | 0.304645 | 5_3:-43014046 | Msa0812700:CDS |
ACCAATGGTGAAATCTTTAA+TGG | 0.307869 | 5_3:+43015646 | None:intergenic |
GCATCAGTACAATAAATTAT+TGG | 0.314084 | 5_3:+43015406 | None:intergenic |
ACACTTGTGATTCTGATATC+TGG | 0.335621 | 5_3:-43012417 | Msa0812700:CDS |
TTTAACTGACAGATCTTTGC+TGG | 0.339407 | 5_3:-43013748 | Msa0812700:CDS |
GGAGATGGAGGCACAGAAAA+AGG | 0.340117 | 5_3:-43014586 | Msa0812700:CDS |
ACAAGGTGTTTCAACCATTA+TGG | 0.343028 | 5_3:-43014485 | Msa0812700:CDS |
GGATGGACGTTTACTAAGTA+TGG | 0.345111 | 5_3:-43012778 | Msa0812700:CDS |
GGTTGTTCCATTTCACCATT+TGG | 0.349461 | 5_3:-43015870 | Msa0812700:five_prime_UTR |
GAATCACAGATGTTATCTTT+GGG | 0.351585 | 5_3:-43012311 | Msa0812700:CDS |
TTTAAGATATGAAAAGTTCA+TGG | 0.351598 | 5_3:-43013880 | Msa0812700:CDS |
TAATTTATGAACTTTGTTCC+AGG | 0.354760 | 5_3:+43015894 | None:intergenic |
AACTATCTTGGATGCTGTTA+AGG | 0.355539 | 5_3:-43012634 | Msa0812700:CDS |
CACGTCAATTCCAGCATTAA+TGG | 0.357491 | 5_3:+43013994 | None:intergenic |
GGAACTCATGCTAATGATAT+CGG | 0.357760 | 5_3:-43012814 | Msa0812700:CDS |
CACGGTAACAATAACGTCTA+TGG | 0.361228 | 5_3:-43015379 | Msa0812700:CDS |
GTCATCTGATTGGGCTGATA+TGG | 0.362204 | 5_3:-43015473 | Msa0812700:CDS |
AGGGTAAACTACCAATGAAT+TGG | 0.364228 | 5_3:-43012275 | Msa0812700:CDS |
AATTTCAGGCACAACTATCT+TGG | 0.364724 | 5_3:-43012646 | Msa0812700:intron |
TTATGGGCTAGCTTATAATA+AGG | 0.364827 | 5_3:-43012178 | Msa0812700:CDS |
CGCTCTATGAATTCTGTTGT+TGG | 0.367124 | 5_3:+43012570 | None:intergenic |
GCCTACCTCCCAGCCACAAA+TGG | 0.372066 | 5_3:+43014758 | None:intergenic |
AGTCATGTTTCGGACAATTT+CGG | 0.376198 | 5_3:+43014835 | None:intergenic |
AGGGGCTACCCATTTGTGGC+TGG | 0.380723 | 5_3:-43014767 | Msa0812700:CDS |
AGGTCTGCAAAGATCCTAGA+TGG | 0.390671 | 5_3:-43014889 | Msa0812700:CDS |
GCCAAGAGAATCCTTGTTGC+TGG | 0.393682 | 5_3:-43012835 | Msa0812700:CDS |
CAATTTCATCTCCGTTAAAT+GGG | 0.396571 | 5_3:+43012466 | None:intergenic |
GAACTTGTAATCCCATTTAA+CGG | 0.401913 | 5_3:-43012477 | Msa0812700:CDS |
CTTTGGGGATCATGACTTCA+AGG | 0.401948 | 5_3:-43012295 | Msa0812700:CDS |
CCATAACCAAGAGGGAATAA+GGG | 0.403111 | 5_3:+43012195 | None:intergenic |
ATCTGGAAGACCTTTGGTCT+TGG | 0.409437 | 5_3:-43012400 | Msa0812700:CDS |
TTGACGTCTTTAGTTCAATC+AGG | 0.411614 | 5_3:-43013852 | Msa0812700:CDS |
GGGGCTACCCATTTGTGGCT+GGG | 0.413579 | 5_3:-43014766 | Msa0812700:CDS |
GGAACAAAGTTTGTGGGAAA+AGG | 0.415034 | 5_3:-43012379 | Msa0812700:CDS |
TTAGCAGTTGCACTATTTGG+TGG | 0.417251 | 5_3:+43015505 | None:intergenic |
ACTCTTCTAAACCAATTCAT+TGG | 0.419131 | 5_3:+43012264 | None:intergenic |
TAGCCCCTTGGATGATATAC+TGG | 0.421001 | 5_3:+43014782 | None:intergenic |
TCTGATATCTGGAAGACCTT+TGG | 0.421164 | 5_3:-43012406 | Msa0812700:CDS |
GTGCTATGCAATCCACATAA+GGG | 0.425088 | 5_3:+43014506 | None:intergenic |
GAAAGAAAAGCTAGGCTTCA+AGG | 0.425811 | 5_3:-43014398 | Msa0812700:intron |
GCCATTAAAGATTTCACCAT+TGG | 0.428169 | 5_3:-43015647 | Msa0812700:intron |
AGAAGGAAGTGTCATCTGAT+TGG | 0.432915 | 5_3:-43015483 | Msa0812700:CDS |
CGAGCTTCAACCGTTTCAGC+AGG | 0.434983 | 5_3:+43015755 | None:intergenic |
AGGGCTTTGTGATTTCTGAC+TGG | 0.436021 | 5_3:-43014078 | Msa0812700:CDS |
GCTCTATGAATTCTGTTGTT+GGG | 0.437427 | 5_3:+43012571 | None:intergenic |
AGTAACAGAACGTTCAATTT+GGG | 0.442472 | 5_3:+43015679 | None:intergenic |
GATGACCCCTTATTCCCTCT+TGG | 0.445616 | 5_3:-43012201 | Msa0812700:CDS |
ATGACTTTGAAAGAGAAGAT+TGG | 0.449827 | 5_3:-43015710 | Msa0812700:CDS |
TCATAGCATCTTCCCCATCT+AGG | 0.450563 | 5_3:+43014875 | None:intergenic |
AAACATAAGAAGTCATGTTT+CGG | 0.451306 | 5_3:+43014825 | None:intergenic |
TATTGTACTGATGCTATTCA+CGG | 0.453578 | 5_3:-43015397 | Msa0812700:CDS |
TGAAGCAGTTCGAAAGTCAT+TGG | 0.454495 | 5_3:-43012914 | Msa0812700:CDS |
GATTCCATTTCCTTCACTGC+CGG | 0.456035 | 5_3:+43012329 | None:intergenic |
TTTCCTCACAACGTTGGCCT+CGG | 0.456574 | 5_3:-43015346 | Msa0812700:CDS |
AGATCTTTGCTGGATATTGT+TGG | 0.459020 | 5_3:-43013738 | Msa0812700:CDS |
TCCATCTCCAACAAAATGTC+TGG | 0.459864 | 5_3:+43014600 | None:intergenic |
GAAGGAAGTGTCATCTGATT+GGG | 0.460679 | 5_3:-43015482 | Msa0812700:CDS |
GGTCTTGGAACAAAGTTTGT+GGG | 0.461051 | 5_3:-43012385 | Msa0812700:CDS |
ACAGCTTGATCAGCCTGATA+AGG | 0.465072 | 5_3:-43012238 | Msa0812700:CDS |
AAATAGTGCAACTGCTAAGA+AGG | 0.470452 | 5_3:-43015500 | Msa0812700:CDS |
CAGCTTGATCAGCCTGATAA+GGG | 0.470886 | 5_3:-43012237 | Msa0812700:CDS |
AAACCTAACCAATTGTGATC+TGG | 0.474654 | 5_3:+43012746 | None:intergenic |
TGTGCTATGCAATCCACATA+AGG | 0.474975 | 5_3:+43014505 | None:intergenic |
GATCCACATGGCCCCTTATG+TGG | 0.475386 | 5_3:-43014518 | Msa0812700:CDS |
TTGATGTCCAAATGGTGAAA+TGG | 0.475445 | 5_3:+43015863 | None:intergenic |
GATATCAGAATCACAAGTGT+TGG | 0.476636 | 5_3:+43012420 | None:intergenic |
GGGCTTTGTGATTTCTGACT+GGG | 0.478563 | 5_3:-43014077 | Msa0812700:CDS |
TGGTCTTGGAACAAAGTTTG+TGG | 0.481571 | 5_3:-43012386 | Msa0812700:CDS |
TGCCTGTCCAATGGAAGAAA+AGG | 0.485220 | 5_3:+43012859 | None:intergenic |
TCCAAGGGGCTACCCATTTG+TGG | 0.486656 | 5_3:-43014771 | Msa0812700:CDS |
TCTAGTGGCCAGATCACAAT+TGG | 0.486949 | 5_3:-43012754 | Msa0812700:intron |
GTCTCATATTCCAGCTGGAA+TGG | 0.487762 | 5_3:-43014463 | Msa0812700:CDS |
TCACCTCCACACTCAGCATA+GGG | 0.490280 | 5_3:+43012507 | None:intergenic |
GCCACAAATGGGTAGCCCCT+TGG | 0.496947 | 5_3:+43014770 | None:intergenic |
ATTCCATTTCCTTCACTGCC+GGG | 0.497220 | 5_3:+43012330 | None:intergenic |
TCCAGCAACAAGGATTCTCT+TGG | 0.497425 | 5_3:+43012834 | None:intergenic |
AATTTATGAACTTTGTTCCA+GGG | 0.498816 | 5_3:+43015895 | None:intergenic |
GAACTCATGCTAATGATATC+GGG | 0.502550 | 5_3:-43012813 | Msa0812700:CDS |
GATTGGGCTGATATGGTTGA+CGG | 0.503500 | 5_3:-43015466 | Msa0812700:CDS |
CTCAACGGCATCATCAATCC+TGG | 0.511342 | 5_3:+43013815 | None:intergenic |
TTATGGTCTCATATTCCAGC+TGG | 0.513411 | 5_3:-43014468 | Msa0812700:CDS |
ATATCTACTTCCATTAATGC+TGG | 0.513950 | 5_3:-43014004 | Msa0812700:CDS |
ATATCAGAATCACAAGTGTT+GGG | 0.514399 | 5_3:+43012421 | None:intergenic |
TAACGATAATCTGAACCATA+AGG | 0.514827 | 5_3:+43014031 | None:intergenic |
GCATGGTTGCCCGGCAGTGA+AGG | 0.515743 | 5_3:-43012339 | Msa0812700:CDS |
TTGCCCGGCAGTGAAGGAAA+TGG | 0.516306 | 5_3:-43012333 | Msa0812700:CDS |
CTGGCGCTTGAATCACGGTT+AGG | 0.517230 | 5_3:-43015433 | Msa0812700:CDS |
CCTACCTCCCAGCCACAAAT+GGG | 0.519639 | 5_3:+43014759 | None:intergenic |
GAGTTTGACTCCATTCCAGC+TGG | 0.521515 | 5_3:+43014453 | None:intergenic |
TTTGTGATTTCTGACTGGGA+GGG | 0.522660 | 5_3:-43014073 | Msa0812700:CDS |
TATAATAAAAGTGCATGCCC+TGG | 0.522855 | 5_3:-43015912 | Msa0812700:five_prime_UTR |
TCACTTGAACTTAGAGCAAG+TGG | 0.523247 | 5_3:-43015060 | Msa0812700:CDS |
AATGGAAGAAAAGGTTTACT+AGG | 0.526264 | 5_3:+43012868 | None:intergenic |
CAGGAGAAGTACCAATCGCC+AGG | 0.527965 | 5_3:-43013833 | Msa0812700:CDS |
CTGCAGAGTTGATGTCCAAA+TGG | 0.534421 | 5_3:+43015855 | None:intergenic |
GCTGGATATTGTTGGTTGCA+AGG | 0.536491 | 5_3:-43013730 | Msa0812700:intron |
GCTGGAATATGAGACCATAA+TGG | 0.546993 | 5_3:+43014471 | None:intergenic |
CTCTTGGCATGCCTGTCCAA+TGG | 0.548749 | 5_3:+43012850 | None:intergenic |
AACCTCCAGTATATCATCCA+AGG | 0.551622 | 5_3:-43014787 | Msa0812700:CDS |
TCTTATGTTTCAGGTTTGCA+AGG | 0.552090 | 5_3:-43014812 | Msa0812700:CDS |
GTGAAATCTTTAATGGCAGA+AGG | 0.554246 | 5_3:+43015653 | None:intergenic |
TCAAAGTCATAAGAGAAAGA+AGG | 0.555741 | 5_3:+43015723 | None:intergenic |
TCGGGTATCAATGTGGAGGA+TGG | 0.556709 | 5_3:-43012795 | Msa0812700:CDS |
TTGGATGATATACTGGAGGT+TGG | 0.558262 | 5_3:+43014789 | None:intergenic |
GTATATGAATCCTGCTGAAA+CGG | 0.566527 | 5_3:-43015765 | Msa0812700:CDS |
CTTTGTGATTTCTGACTGGG+AGG | 0.572095 | 5_3:-43014074 | Msa0812700:CDS |
TCCAACAAAATGTCTGGCAC+AGG | 0.572984 | 5_3:+43014606 | None:intergenic |
GGCTTCACCAATAGCAACAA+TGG | 0.575663 | 5_3:+43012530 | None:intergenic |
GCATCATCAATCCTGGCGAT+TGG | 0.576765 | 5_3:+43013822 | None:intergenic |
GGATGCTGTTAAGGAAGCTG+TGG | 0.579903 | 5_3:-43012625 | Msa0812700:CDS |
CAAGAACTAAGTCAGTTACA+TGG | 0.580003 | 5_3:-43015795 | Msa0812700:exon |
AGAAGCTGGCGCTTGAATCA+CGG | 0.580598 | 5_3:-43015438 | Msa0812700:CDS |
CACTCTTAAAATCCGCTCAA+CGG | 0.581745 | 5_3:+43013800 | None:intergenic |
GCTACCCATTTGTGGCTGGG+AGG | 0.583997 | 5_3:-43014763 | Msa0812700:intron |
ACCTCCAGTATATCATCCAA+GGG | 0.585009 | 5_3:-43014786 | Msa0812700:CDS |
GGTCTGCAAAGATCCTAGAT+GGG | 0.587399 | 5_3:-43014888 | Msa0812700:CDS |
GTCACCTCCACACTCAGCAT+AGG | 0.590732 | 5_3:+43012506 | None:intergenic |
GCTCCGAGGCCAACGTTGTG+AGG | 0.591912 | 5_3:+43015343 | None:intergenic |
ACTATATTTCCTCACAACGT+TGG | 0.594556 | 5_3:-43015352 | Msa0812700:CDS |
ACCTCCACACTCAGCATAGG+GGG | 0.603901 | 5_3:+43012509 | None:intergenic |
TGCTATGCAATCCACATAAG+GGG | 0.605461 | 5_3:+43014507 | None:intergenic |
TAGCATGAGTTCCAGCAACA+AGG | 0.605520 | 5_3:+43012824 | None:intergenic |
TATATTATCATATCAAGACT+TGG | 0.606963 | 5_3:-43014545 | Msa0812700:CDS |
TTTGGGGATCATGACTTCAA+GGG | 0.607727 | 5_3:-43012294 | Msa0812700:CDS |
CATTAATGCTGGAATTGACG+TGG | 0.608796 | 5_3:-43013993 | Msa0812700:intron |
TTTACTAAGTATGGATCTAG+TGG | 0.609477 | 5_3:-43012769 | Msa0812700:CDS |
TGGAATGGAGTCAAACTCCA+TGG | 0.613942 | 5_3:-43014448 | Msa0812700:CDS |
TAATTAGTACTTCAGGAACA+AGG | 0.614183 | 5_3:-43014635 | Msa0812700:intron |
AATCACAGATGTTATCTTTG+GGG | 0.616261 | 5_3:-43012310 | Msa0812700:CDS |
AAACTTTGTTCCAAGACCAA+AGG | 0.622449 | 5_3:+43012390 | None:intergenic |
CATAACCAAGAGGGAATAAG+GGG | 0.624050 | 5_3:+43012196 | None:intergenic |
TTGATCAGCCTGATAAGGGA+GGG | 0.629383 | 5_3:-43012233 | Msa0812700:CDS |
CTTGATCAGCCTGATAAGGG+AGG | 0.634857 | 5_3:-43012234 | Msa0812700:CDS |
TATCATATCAAGACTTGGAG+AGG | 0.635186 | 5_3:-43014540 | Msa0812700:CDS |
ACGTTGGCCTCGGAGCAACT+AGG | 0.636583 | 5_3:-43015336 | Msa0812700:intron |
AAGCTAGCCCATAACCAAGA+GGG | 0.637396 | 5_3:+43012187 | None:intergenic |
GGATTGATGATGCCGTTGAG+CGG | 0.645720 | 5_3:-43013812 | Msa0812700:CDS |
AGATGCCTTACAGATACACT+AGG | 0.649143 | 5_3:+43015018 | None:intergenic |
CACCTCCACACTCAGCATAG+GGG | 0.652884 | 5_3:+43012508 | None:intergenic |
AATGATATCGGGTATCAATG+TGG | 0.657905 | 5_3:-43012802 | Msa0812700:CDS |
GTCTGCAAAGATCCTAGATG+GGG | 0.658282 | 5_3:-43014887 | Msa0812700:CDS |
CCCCTTGGATGATATACTGG+AGG | 0.660609 | 5_3:+43014785 | None:intergenic |
TTCAGCAGGATTCATATACA+CGG | 0.662584 | 5_3:+43015769 | None:intergenic |
TAATCAGAAAGCGATGACCA+TGG | 0.669304 | 5_3:+43014431 | None:intergenic |
GATATCGGGTATCAATGTGG+AGG | 0.677226 | 5_3:-43012799 | Msa0812700:CDS |
GATGCTGTTAAGGAAGCTGT+GGG | 0.680700 | 5_3:-43012624 | Msa0812700:CDS |
TAAGCTAGCCCATAACCAAG+AGG | 0.693183 | 5_3:+43012186 | None:intergenic |
TATGTGGATTGCATAGCACA+AGG | 0.701412 | 5_3:-43014502 | Msa0812700:CDS |
AATCCACATAAGGGGCCATG+TGG | 0.706935 | 5_3:+43014515 | None:intergenic |
AGACTTGGAGAGGATCCACA+TGG | 0.730403 | 5_3:-43014530 | Msa0812700:CDS |
ACACAAACCTAGTTGCTCCG+AGG | 0.747671 | 5_3:+43015329 | None:intergenic |
CCTCCAGTATATCATCCAAG+GGG | 0.747739 | 5_3:-43014785 | Msa0812700:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TAAAAAAAATAAGAAACTTT+CGG | + | chr5_3:43012206-43012225 | None:intergenic | 10.0% |
!!! | AAGTATTGATTTTTTTAAAA+CGG | + | chr5_3:43013443-43013462 | None:intergenic | 10.0% |
!! | ATTAATTAATTTAACAAGTT+TGG | - | chr5_3:43014860-43014879 | Msa0812700:CDS | 10.0% |
!! | TTAATTAATTTAACAAGTTT+GGG | - | chr5_3:43014861-43014880 | Msa0812700:CDS | 10.0% |
!! | AGGTTAAAATAAAAATGATA+AGG | + | chr5_3:43012847-43012866 | None:intergenic | 15.0% |
!!! | ATTGATAGTATTTATATAGA+AGG | + | chr5_3:43015049-43015068 | None:intergenic | 15.0% |
!! | TAAGAAATGAAAGTAGTATA+AGG | + | chr5_3:43012552-43012571 | None:intergenic | 20.0% |
!!! | AAGCTTTGATTTTTCATTAT+TGG | - | chr5_3:43013006-43013025 | Msa0812700:intron | 20.0% |
!! | TCAATAACAAATTCAAAAGT+TGG | + | chr5_3:43013152-43013171 | None:intergenic | 20.0% |
!! | TATATTATCATATCAAGACT+TGG | - | chr5_3:43013596-43013615 | Msa0812700:intron | 20.0% |
!!! | TAGATTATTTTTTCTCTTTC+TGG | - | chr5_3:43013766-43013785 | Msa0812700:CDS | 20.0% |
!! | AGATATGTTAAAATATCATG+GGG | + | chr5_3:43014188-43014207 | None:intergenic | 20.0% |
!! | CAGATATGTTAAAATATCAT+GGG | + | chr5_3:43014189-43014208 | None:intergenic | 20.0% |
!!! | ATGAACTTTTCATATCTTAA+AGG | + | chr5_3:43014262-43014281 | None:intergenic | 20.0% |
!!! | TTTAAGATATGAAAAGTTCA+TGG | - | chr5_3:43014261-43014280 | Msa0812700:intron | 20.0% |
!! | AAAACGACTTATTAAAACTT+GGG | - | chr5_3:43014809-43014828 | Msa0812700:CDS | 20.0% |
!!! | GTATAGGTACTTTTAATTAA+GGG | + | chr5_3:43014957-43014976 | None:intergenic | 20.0% |
!!! | AGTATAGGTACTTTTAATTA+AGG | + | chr5_3:43014958-43014977 | None:intergenic | 20.0% |
! | AATTTATGAACTTTGTTCCA+GGG | + | chr5_3:43012249-43012268 | None:intergenic | 25.0% |
! | TAATTTATGAACTTTGTTCC+AGG | + | chr5_3:43012250-43012269 | None:intergenic | 25.0% |
! | GGAACAAAGTTCATAAATTA+AGG | - | chr5_3:43012250-43012269 | Msa0812700:CDS | 25.0% |
! | ACTACTTTCATTTCTTAGTA+TGG | - | chr5_3:43012555-43012574 | Msa0812700:CDS | 25.0% |
! | GCATCAGTACAATAAATTAT+TGG | + | chr5_3:43012738-43012757 | None:intergenic | 25.0% |
! | ATTGGAAAGATGCAAATTAA+AGG | + | chr5_3:43012867-43012886 | None:intergenic | 25.0% |
! | ACTTGCATATATGAATGAAT+AGG | - | chr5_3:43013232-43013251 | Msa0812700:intron | 25.0% |
! | AAACATAAGAAGTCATGTTT+CGG | + | chr5_3:43013319-43013338 | None:intergenic | 25.0% |
! | ATACTTCTAATTAGTACTTC+AGG | - | chr5_3:43013499-43013518 | Msa0812700:intron | 25.0% |
!!! | GATATTTTGAAAGAAAAGCT+AGG | - | chr5_3:43013735-43013754 | Msa0812700:CDS | 25.0% |
! | AAATCTAATAGAACTAGATC+AGG | - | chr5_3:43013897-43013916 | Msa0812700:intron | 25.0% |
! | GCAGATATGTTAAAATATCA+TGG | + | chr5_3:43014190-43014209 | None:intergenic | 25.0% |
! | ATATATTCGTGAATATATGC+AGG | - | chr5_3:43014228-43014247 | Msa0812700:intron | 25.0% |
! | GTCGTAATAACTATATTTGA+GGG | + | chr5_3:43014576-43014595 | None:intergenic | 25.0% |
! | GAAAACGACTTATTAAAACT+TGG | - | chr5_3:43014808-43014827 | Msa0812700:CDS | 25.0% |
! | AAACGACTTATTAAAACTTG+GGG | - | chr5_3:43014810-43014829 | Msa0812700:CDS | 25.0% |
!!! | AATTAAGGGTTTTTTGTGAA+CGG | + | chr5_3:43014943-43014962 | None:intergenic | 25.0% |
! | AGTATTTATATAGAAGGAGA+GGG | + | chr5_3:43015043-43015062 | None:intergenic | 25.0% |
! | TAGTATTTATATAGAAGGAG+AGG | + | chr5_3:43015044-43015063 | None:intergenic | 25.0% |
TCAAAGTCATAAGAGAAAGA+AGG | + | chr5_3:43012421-43012440 | None:intergenic | 30.0% | |
! | ATGACTTTGAAAGAGAAGAT+TGG | - | chr5_3:43012431-43012450 | Msa0812700:CDS | 30.0% |
AGTAACAGAACGTTCAATTT+GGG | + | chr5_3:43012465-43012484 | None:intergenic | 30.0% | |
TAGTAACAGAACGTTCAATT+TGG | + | chr5_3:43012466-43012485 | None:intergenic | 30.0% | |
ACCAATGGTGAAATCTTTAA+TGG | + | chr5_3:43012498-43012517 | None:intergenic | 30.0% | |
! | TCCTTGTATTTTGCAACTAA+GGG | - | chr5_3:43012598-43012617 | Msa0812700:CDS | 30.0% |
! | TATTGTACTGATGCTATTCA+CGG | - | chr5_3:43012744-43012763 | Msa0812700:intron | 30.0% |
!!! | CATCTTTCCAATTTTAGCTA+TGG | - | chr5_3:43012875-43012894 | Msa0812700:CDS | 30.0% |
!! | GCATGTTTGTATTGACTTAT+AGG | - | chr5_3:43012904-43012923 | Msa0812700:CDS | 30.0% |
AACATGACTTCTTATGTTTC+AGG | - | chr5_3:43013320-43013339 | Msa0812700:intron | 30.0% | |
! | TTTTGACAAAGATGTATGCA+TGG | + | chr5_3:43013471-43013490 | None:intergenic | 30.0% |
TAATTAGTACTTCAGGAACA+AGG | - | chr5_3:43013506-43013525 | Msa0812700:intron | 30.0% | |
! | ACAGAAAAAGGTGTAAATGA+GGG | - | chr5_3:43013567-43013586 | Msa0812700:intron | 30.0% |
! | GGAAATTGATCTTTTATCGA+TGG | - | chr5_3:43013787-43013806 | Msa0812700:CDS | 30.0% |
! | TTTTAACAGCTTCATCATAC+TGG | + | chr5_3:43013880-43013899 | None:intergenic | 30.0% |
! | TAAGATCAATTTTCCACTGT+AGG | - | chr5_3:43014043-43014062 | Msa0812700:CDS | 30.0% |
! | AAGATCAATTTTCCACTGTA+GGG | - | chr5_3:43014044-43014063 | Msa0812700:CDS | 30.0% |
GATGAATTATGTCAACCTTA+TGG | - | chr5_3:43014095-43014114 | Msa0812700:intron | 30.0% | |
TAACGATAATCTGAACCATA+AGG | + | chr5_3:43014113-43014132 | None:intergenic | 30.0% | |
ATATCTACTTCCATTAATGC+TGG | - | chr5_3:43014137-43014156 | Msa0812700:intron | 30.0% | |
GTGCATAGTAAATCATAACA+GGG | + | chr5_3:43014528-43014547 | None:intergenic | 30.0% | |
AGTGCATAGTAAATCATAAC+AGG | + | chr5_3:43014529-43014548 | None:intergenic | 30.0% | |
GGTCGTAATAACTATATTTG+AGG | + | chr5_3:43014577-43014596 | None:intergenic | 30.0% | |
GTATACGTATCATATTTGAG+AGG | + | chr5_3:43014598-43014617 | None:intergenic | 30.0% | |
TATACTACTCAAAACCGAAA+GGG | - | chr5_3:43014613-43014632 | Msa0812700:CDS | 30.0% | |
!! | AAATAAAAGTTTCTGAGGCA+TGG | + | chr5_3:43014707-43014726 | None:intergenic | 30.0% |
! | ATGCCTCAGAAACTTTTATT+TGG | - | chr5_3:43014706-43014725 | Msa0812700:intron | 30.0% |
ACACCAAATAAAAGTTTCTG+AGG | + | chr5_3:43014712-43014731 | None:intergenic | 30.0% | |
!!! | AGTACTGATTTTGTGATGAA+TGG | + | chr5_3:43014997-43015016 | None:intergenic | 30.0% |
ATTGTAAAAATACCCCACAT+TGG | + | chr5_3:43015085-43015104 | None:intergenic | 30.0% | |
!! | ACTAGTTCTATCCAATATGT+GGG | - | chr5_3:43015120-43015139 | Msa0812700:intron | 30.0% |
!! | AATTTGTTAGAACACAAGTG+TGG | + | chr5_3:43015177-43015196 | None:intergenic | 30.0% |
!! | TCATTGGTTCTGTTGAAAAA+CGG | - | chr5_3:43015243-43015262 | Msa0812700:intron | 30.0% |
AATGGAAGAAAAGGTTTACT+AGG | + | chr5_3:43015276-43015295 | None:intergenic | 30.0% | |
! | TAGTAAACCTTTTCTTCCAT+TGG | - | chr5_3:43015275-43015294 | Msa0812700:intron | 30.0% |
TTTACTAAGTATGGATCTAG+TGG | - | chr5_3:43015372-43015391 | Msa0812700:CDS | 30.0% | |
CTTTATATGCACTCAATTTC+AGG | - | chr5_3:43015481-43015500 | Msa0812700:CDS | 30.0% | |
GAACTTGTAATCCCATTTAA+CGG | - | chr5_3:43015664-43015683 | Msa0812700:CDS | 30.0% | |
CAATTTCATCTCCGTTAAAT+GGG | + | chr5_3:43015678-43015697 | None:intergenic | 30.0% | |
ACAATTTCATCTCCGTTAAA+TGG | + | chr5_3:43015679-43015698 | None:intergenic | 30.0% | |
ATATCAGAATCACAAGTGTT+GGG | + | chr5_3:43015723-43015742 | None:intergenic | 30.0% | |
GAATCACAGATGTTATCTTT+GGG | - | chr5_3:43015830-43015849 | Msa0812700:five_prime_UTR | 30.0% | |
AATCACAGATGTTATCTTTG+GGG | - | chr5_3:43015831-43015850 | Msa0812700:five_prime_UTR | 30.0% | |
ACTCTTCTAAACCAATTCAT+TGG | + | chr5_3:43015880-43015899 | None:intergenic | 30.0% | |
!! | TTATGGGCTAGCTTATAATA+AGG | - | chr5_3:43015963-43015982 | Msa0812700:five_prime_UTR | 30.0% |
! | TATAATAAAAGTGCATGCCC+TGG | - | chr5_3:43012229-43012248 | Msa0812700:CDS | 35.0% |
TTGATGTCCAAATGGTGAAA+TGG | + | chr5_3:43012281-43012300 | None:intergenic | 35.0% | |
CAAGAACTAAGTCAGTTACA+TGG | - | chr5_3:43012346-43012365 | Msa0812700:CDS | 35.0% | |
TTCAGCAGGATTCATATACA+CGG | + | chr5_3:43012375-43012394 | None:intergenic | 35.0% | |
GTATATGAATCCTGCTGAAA+CGG | - | chr5_3:43012376-43012395 | Msa0812700:CDS | 35.0% | |
GTGAAATCTTTAATGGCAGA+AGG | + | chr5_3:43012491-43012510 | None:intergenic | 35.0% | |
GCCATTAAAGATTTCACCAT+TGG | - | chr5_3:43012494-43012513 | Msa0812700:CDS | 35.0% | |
!! | GTAGATAGTAAGAGTACCAA+TGG | + | chr5_3:43012513-43012532 | None:intergenic | 35.0% |
! | CTCCTTGTATTTTGCAACTA+AGG | - | chr5_3:43012597-43012616 | Msa0812700:CDS | 35.0% |
TCCCTTAGTTGCAAAATACA+AGG | + | chr5_3:43012602-43012621 | None:intergenic | 35.0% | |
TTCTTAGCAGTTGCACTATT+TGG | + | chr5_3:43012642-43012661 | None:intergenic | 35.0% | |
AAATAGTGCAACTGCTAAGA+AGG | - | chr5_3:43012641-43012660 | Msa0812700:CDS | 35.0% | |
ACTATATTTCCTCACAACGT+TGG | - | chr5_3:43012789-43012808 | Msa0812700:CDS | 35.0% | |
CCTTTGTCCATAGCTAAAAT+TGG | + | chr5_3:43012885-43012904 | None:intergenic | 35.0% | |
!!! | CCAATTTTAGCTATGGACAA+AGG | - | chr5_3:43012882-43012901 | Msa0812700:CDS | 35.0% |
! | ATGCAAGTGAGTTTTACATC+TGG | + | chr5_3:43013220-43013239 | None:intergenic | 35.0% |
AGTCATGTTTCGGACAATTT+CGG | + | chr5_3:43013309-43013328 | None:intergenic | 35.0% | |
!! | TCTTATGTTTCAGGTTTGCA+AGG | - | chr5_3:43013329-43013348 | Msa0812700:intron | 35.0% |
! | CACAGAAAAAGGTGTAAATG+AGG | - | chr5_3:43013566-43013585 | Msa0812700:intron | 35.0% |
! | CAGAAAAAGGTGTAAATGAG+GGG | - | chr5_3:43013568-43013587 | Msa0812700:intron | 35.0% |
TATCATATCAAGACTTGGAG+AGG | - | chr5_3:43013601-43013620 | Msa0812700:intron | 35.0% | |
! | ACAAGGTGTTTCAACCATTA+TGG | - | chr5_3:43013656-43013675 | Msa0812700:intron | 35.0% |
! | TTGACGTCTTTAGTTCAATC+AGG | - | chr5_3:43014289-43014308 | Msa0812700:intron | 35.0% |
AGCAAAGATCTGTCAGTTAA+AGG | + | chr5_3:43014394-43014413 | None:intergenic | 35.0% | |
TTTAACTGACAGATCTTTGC+TGG | - | chr5_3:43014393-43014412 | Msa0812700:intron | 35.0% | |
AGATCTTTGCTGGATATTGT+TGG | - | chr5_3:43014403-43014422 | Msa0812700:CDS | 35.0% | |
GTATACTACTCAAAACCGAA+AGG | - | chr5_3:43014612-43014631 | Msa0812700:CDS | 35.0% | |
CTCTCTTCTTATATCCCTTT+CGG | + | chr5_3:43014630-43014649 | None:intergenic | 35.0% | |
AACTCATTAACACAAGCCAA+AGG | - | chr5_3:43014661-43014680 | Msa0812700:intron | 35.0% | |
ACTCATTAACACAAGCCAAA+GGG | - | chr5_3:43014662-43014681 | Msa0812700:intron | 35.0% | |
CACAAAATCAGTACTCCAAA+TGG | - | chr5_3:43015002-43015021 | Msa0812700:intron | 35.0% | |
TGTATGTGATCTATCCAATG+TGG | - | chr5_3:43015068-43015087 | Msa0812700:CDS | 35.0% | |
GTATGTGATCTATCCAATGT+GGG | - | chr5_3:43015069-43015088 | Msa0812700:CDS | 35.0% | |
TATGTGATCTATCCAATGTG+GGG | - | chr5_3:43015070-43015089 | Msa0812700:CDS | 35.0% | |
!! | CACTAGTTCTATCCAATATG+TGG | - | chr5_3:43015119-43015138 | Msa0812700:intron | 35.0% |
GGAACTCATGCTAATGATAT+CGG | - | chr5_3:43015327-43015346 | Msa0812700:intron | 35.0% | |
GAACTCATGCTAATGATATC+GGG | - | chr5_3:43015328-43015347 | Msa0812700:intron | 35.0% | |
AATGATATCGGGTATCAATG+TGG | - | chr5_3:43015339-43015358 | Msa0812700:CDS | 35.0% | |
AAACCTAACCAATTGTGATC+TGG | + | chr5_3:43015398-43015417 | None:intergenic | 35.0% | |
AATTTCAGGCACAACTATCT+TGG | - | chr5_3:43015495-43015514 | Msa0812700:CDS | 35.0% | |
AACTATCTTGGATGCTGTTA+AGG | - | chr5_3:43015507-43015526 | Msa0812700:CDS | 35.0% | |
GCTCTATGAATTCTGTTGTT+GGG | + | chr5_3:43015573-43015592 | None:intergenic | 35.0% | |
! | TCTTTTGCCATTGTTGCTAT+TGG | - | chr5_3:43015604-43015623 | Msa0812700:intron | 35.0% |
GATATCAGAATCACAAGTGT+TGG | + | chr5_3:43015724-43015743 | None:intergenic | 35.0% | |
ACACTTGTGATTCTGATATC+TGG | - | chr5_3:43015724-43015743 | Msa0812700:CDS | 35.0% | |
AAACTTTGTTCCAAGACCAA+AGG | + | chr5_3:43015754-43015773 | None:intergenic | 35.0% | |
GGAATCACAGATGTTATCTT+TGG | - | chr5_3:43015829-43015848 | Msa0812700:five_prime_UTR | 35.0% | |
AGGGTAAACTACCAATGAAT+TGG | - | chr5_3:43015866-43015885 | Msa0812700:five_prime_UTR | 35.0% | |
GGTTGTTCCATTTCACCATT+TGG | - | chr5_3:43012271-43012290 | Msa0812700:CDS | 40.0% | |
TTAGCAGTTGCACTATTTGG+TGG | + | chr5_3:43012639-43012658 | None:intergenic | 40.0% | |
!! | AGAAGGAAGTGTCATCTGAT+TGG | - | chr5_3:43012658-43012677 | Msa0812700:intron | 40.0% |
!! | GAAGGAAGTGTCATCTGATT+GGG | - | chr5_3:43012659-43012678 | Msa0812700:intron | 40.0% |
CACGGTAACAATAACGTCTA+TGG | - | chr5_3:43012762-43012781 | Msa0812700:CDS | 40.0% | |
TCACTTGAACTTAGAGCAAG+TGG | - | chr5_3:43013081-43013100 | Msa0812700:intron | 40.0% | |
TAGCTCCTAGTGTATCTGTA+AGG | - | chr5_3:43013118-43013137 | Msa0812700:intron | 40.0% | |
AGATGCCTTACAGATACACT+AGG | + | chr5_3:43013126-43013145 | None:intergenic | 40.0% | |
TTGGATGATATACTGGAGGT+TGG | + | chr5_3:43013355-43013374 | None:intergenic | 40.0% | |
AACCTCCAGTATATCATCCA+AGG | - | chr5_3:43013354-43013373 | Msa0812700:intron | 40.0% | |
ACCTCCAGTATATCATCCAA+GGG | - | chr5_3:43013355-43013374 | Msa0812700:intron | 40.0% | |
TCCATCTCCAACAAAATGTC+TGG | + | chr5_3:43013544-43013563 | None:intergenic | 40.0% | |
! | AGACATTTTGTTGGAGATGG+AGG | - | chr5_3:43013543-43013562 | Msa0812700:intron | 40.0% |
TGCTATGCAATCCACATAAG+GGG | + | chr5_3:43013637-43013656 | None:intergenic | 40.0% | |
GTGCTATGCAATCCACATAA+GGG | + | chr5_3:43013638-43013657 | None:intergenic | 40.0% | |
TGTGCTATGCAATCCACATA+AGG | + | chr5_3:43013639-43013658 | None:intergenic | 40.0% | |
! | TATGTGGATTGCATAGCACA+AGG | - | chr5_3:43013639-43013658 | Msa0812700:intron | 40.0% |
GCTGGAATATGAGACCATAA+TGG | + | chr5_3:43013673-43013692 | None:intergenic | 40.0% | |
TTATGGTCTCATATTCCAGC+TGG | - | chr5_3:43013673-43013692 | Msa0812700:intron | 40.0% | |
TAATCAGAAAGCGATGACCA+TGG | + | chr5_3:43013713-43013732 | None:intergenic | 40.0% | |
GAAAGAAAAGCTAGGCTTCA+AGG | - | chr5_3:43013743-43013762 | Msa0812700:CDS | 40.0% | |
TTTGTGATTTCTGACTGGGA+GGG | - | chr5_3:43014068-43014087 | Msa0812700:CDS | 40.0% | |
CACGTCAATTCCAGCATTAA+TGG | + | chr5_3:43014150-43014169 | None:intergenic | 40.0% | |
CATTAATGCTGGAATTGACG+TGG | - | chr5_3:43014148-43014167 | Msa0812700:intron | 40.0% | |
TCGTGAATATATGCAGGTGA+TGG | - | chr5_3:43014234-43014253 | Msa0812700:intron | 40.0% | |
CACTCTTAAAATCCGCTCAA+CGG | + | chr5_3:43014344-43014363 | None:intergenic | 40.0% | |
CAAGGTAAGTGAAGTTTAGC+TGG | - | chr5_3:43014429-43014448 | Msa0812700:CDS | 40.0% | |
! | TTTTTCTTCCCTTCTCCCTT+TGG | + | chr5_3:43014680-43014699 | None:intergenic | 40.0% |
AACTGATCCATGAGACACTT+GGG | - | chr5_3:43014766-43014785 | Msa0812700:CDS | 40.0% | |
CGACTTATTAAAACTTGGGG+AGG | - | chr5_3:43014813-43014832 | Msa0812700:CDS | 40.0% | |
!! | TATATCTTACGCGCTGATTG+AGG | + | chr5_3:43014916-43014935 | None:intergenic | 40.0% |
GTTCGTAATCACGACAGTAT+AGG | + | chr5_3:43014973-43014992 | None:intergenic | 40.0% | |
TACTCCAAATGGCTCAATCT+TGG | - | chr5_3:43015013-43015032 | Msa0812700:intron | 40.0% | |
ACTCCAAATGGCTCAATCTT+GGG | - | chr5_3:43015014-43015033 | Msa0812700:intron | 40.0% | |
TCTATCCAATATGTGGGACT+TGG | - | chr5_3:43015126-43015145 | Msa0812700:intron | 40.0% | |
AAACACCAAGTCCCACATAT+TGG | + | chr5_3:43015134-43015153 | None:intergenic | 40.0% | |
CAAGTGTGGCAATTGAAAGT+TGG | + | chr5_3:43015163-43015182 | None:intergenic | 40.0% | |
TGAAGCAGTTCGAAAGTCAT+TGG | - | chr5_3:43015227-43015246 | Msa0812700:intron | 40.0% | |
GGTTCTGTTGAAAAACGGAA+AGG | - | chr5_3:43015248-43015267 | Msa0812700:intron | 40.0% | |
! | AACCTTTTCTTCCATTGGAC+AGG | - | chr5_3:43015280-43015299 | Msa0812700:intron | 40.0% |
GGATGGACGTTTACTAAGTA+TGG | - | chr5_3:43015363-43015382 | Msa0812700:CDS | 40.0% | |
CGCTCTATGAATTCTGTTGT+TGG | + | chr5_3:43015574-43015593 | None:intergenic | 40.0% | |
TCTGATATCTGGAAGACCTT+TGG | - | chr5_3:43015735-43015754 | Msa0812700:CDS | 40.0% | |
! | TGGTCTTGGAACAAAGTTTG+TGG | - | chr5_3:43015755-43015774 | Msa0812700:CDS | 40.0% |
GGTCTTGGAACAAAGTTTGT+GGG | - | chr5_3:43015756-43015775 | Msa0812700:CDS | 40.0% | |
GGAACAAAGTTTGTGGGAAA+AGG | - | chr5_3:43015762-43015781 | Msa0812700:CDS | 40.0% | |
! | TAGAAGCTCTTTTAGCAGCA+TGG | - | chr5_3:43015785-43015804 | Msa0812700:exon | 40.0% |
TTTGGGGATCATGACTTCAA+GGG | - | chr5_3:43015847-43015866 | Msa0812700:five_prime_UTR | 40.0% | |
CATAACCAAGAGGGAATAAG+GGG | + | chr5_3:43015948-43015967 | None:intergenic | 40.0% | |
CCATAACCAAGAGGGAATAA+GGG | + | chr5_3:43015949-43015968 | None:intergenic | 40.0% | |
CCTTATTCCCTCTTGGTTAT+GGG | - | chr5_3:43015947-43015966 | Msa0812700:five_prime_UTR | 40.0% | |
!! | CTGCAGAGTTGATGTCCAAA+TGG | + | chr5_3:43012289-43012308 | None:intergenic | 45.0% |
GTCATCTGATTGGGCTGATA+TGG | - | chr5_3:43012668-43012687 | Msa0812700:intron | 45.0% | |
GATTGGGCTGATATGGTTGA+CGG | - | chr5_3:43012675-43012694 | Msa0812700:intron | 45.0% | |
AGGTCTGCAAAGATCCTAGA+TGG | - | chr5_3:43013252-43013271 | Msa0812700:intron | 45.0% | |
GGTCTGCAAAGATCCTAGAT+GGG | - | chr5_3:43013253-43013272 | Msa0812700:intron | 45.0% | |
GTCTGCAAAGATCCTAGATG+GGG | - | chr5_3:43013254-43013273 | Msa0812700:intron | 45.0% | |
TCATAGCATCTTCCCCATCT+AGG | + | chr5_3:43013269-43013288 | None:intergenic | 45.0% | |
CCTCCAGTATATCATCCAAG+GGG | - | chr5_3:43013356-43013375 | Msa0812700:intron | 45.0% | |
TAGCCCCTTGGATGATATAC+TGG | + | chr5_3:43013362-43013381 | None:intergenic | 45.0% | |
TCCAACAAAATGTCTGGCAC+AGG | + | chr5_3:43013538-43013557 | None:intergenic | 45.0% | |
! | GCCAGACATTTTGTTGGAGA+TGG | - | chr5_3:43013540-43013559 | Msa0812700:intron | 45.0% |
GTCTCATATTCCAGCTGGAA+TGG | - | chr5_3:43013678-43013697 | Msa0812700:intron | 45.0% | |
TGGAATGGAGTCAAACTCCA+TGG | - | chr5_3:43013693-43013712 | Msa0812700:intron | 45.0% | |
GAAATCACAAAGCCCTACAG+TGG | + | chr5_3:43014059-43014078 | None:intergenic | 45.0% | |
! | AGGGCTTTGTGATTTCTGAC+TGG | - | chr5_3:43014063-43014082 | Msa0812700:CDS | 45.0% |
! | GGGCTTTGTGATTTCTGACT+GGG | - | chr5_3:43014064-43014083 | Msa0812700:CDS | 45.0% |
CTTTGTGATTTCTGACTGGG+AGG | - | chr5_3:43014067-43014086 | Msa0812700:CDS | 45.0% | |
! | GCTGGATATTGTTGGTTGCA+AGG | - | chr5_3:43014411-43014430 | Msa0812700:CDS | 45.0% |
TAACACAAGCCAAAGGGAGA+AGG | - | chr5_3:43014668-43014687 | Msa0812700:intron | 45.0% | |
AACACAAGCCAAAGGGAGAA+GGG | - | chr5_3:43014669-43014688 | Msa0812700:intron | 45.0% | |
CAACTGATCCATGAGACACT+TGG | - | chr5_3:43014765-43014784 | Msa0812700:CDS | 45.0% | |
ACTGATCCATGAGACACTTG+GGG | - | chr5_3:43014767-43014786 | Msa0812700:CDS | 45.0% | |
ACTCCCAAGATTGAGCCATT+TGG | + | chr5_3:43015020-43015039 | None:intergenic | 45.0% | |
TGCCTGTCCAATGGAAGAAA+AGG | + | chr5_3:43015285-43015304 | None:intergenic | 45.0% | |
TCCAGCAACAAGGATTCTCT+TGG | + | chr5_3:43015310-43015329 | None:intergenic | 45.0% | |
TAGCATGAGTTCCAGCAACA+AGG | + | chr5_3:43015320-43015339 | None:intergenic | 45.0% | |
GATATCGGGTATCAATGTGG+AGG | - | chr5_3:43015342-43015361 | Msa0812700:CDS | 45.0% | |
TCTAGTGGCCAGATCACAAT+TGG | - | chr5_3:43015387-43015406 | Msa0812700:CDS | 45.0% | |
TGGCCAGATCACAATTGGTT+AGG | - | chr5_3:43015392-43015411 | Msa0812700:CDS | 45.0% | |
GATGCTGTTAAGGAAGCTGT+GGG | - | chr5_3:43015517-43015536 | Msa0812700:CDS | 45.0% | |
GGCTTCACCAATAGCAACAA+TGG | + | chr5_3:43015614-43015633 | None:intergenic | 45.0% | |
ATCTGGAAGACCTTTGGTCT+TGG | - | chr5_3:43015741-43015760 | Msa0812700:CDS | 45.0% | |
ATTCCATTTCCTTCACTGCC+GGG | + | chr5_3:43015814-43015833 | None:intergenic | 45.0% | |
GATTCCATTTCCTTCACTGC+CGG | + | chr5_3:43015815-43015834 | None:intergenic | 45.0% | |
! | CTTTGGGGATCATGACTTCA+AGG | - | chr5_3:43015846-43015865 | Msa0812700:five_prime_UTR | 45.0% |
ACAGCTTGATCAGCCTGATA+AGG | - | chr5_3:43015903-43015922 | Msa0812700:five_prime_UTR | 45.0% | |
CAGCTTGATCAGCCTGATAA+GGG | - | chr5_3:43015904-43015923 | Msa0812700:five_prime_UTR | 45.0% | |
TTGATCAGCCTGATAAGGGA+GGG | - | chr5_3:43015908-43015927 | Msa0812700:five_prime_UTR | 45.0% | |
CATGAATTCCCTCCCTTATC+AGG | + | chr5_3:43015919-43015938 | None:intergenic | 45.0% | |
CCCTTATTCCCTCTTGGTTA+TGG | - | chr5_3:43015946-43015965 | Msa0812700:five_prime_UTR | 45.0% | |
CCCATAACCAAGAGGGAATA+AGG | + | chr5_3:43015950-43015969 | None:intergenic | 45.0% | |
AAGCTAGCCCATAACCAAGA+GGG | + | chr5_3:43015957-43015976 | None:intergenic | 45.0% | |
TAAGCTAGCCCATAACCAAG+AGG | + | chr5_3:43015958-43015977 | None:intergenic | 45.0% | |
! | GGTTGACGGTTTTCAGAAGC+TGG | - | chr5_3:43012689-43012708 | Msa0812700:intron | 50.0% |
AGAAGCTGGCGCTTGAATCA+CGG | - | chr5_3:43012703-43012722 | Msa0812700:intron | 50.0% | |
! | TTTCCTCACAACGTTGGCCT+CGG | - | chr5_3:43012795-43012814 | Msa0812700:CDS | 50.0% |
ACACAAACCTAGTTGCTCCG+AGG | + | chr5_3:43012815-43012834 | None:intergenic | 50.0% | |
TGCATGCATAGTCACCTGTG+AGG | - | chr5_3:43012954-43012973 | Msa0812700:intron | 50.0% | |
GCATGCATAGTCACCTGTGA+GGG | - | chr5_3:43012955-43012974 | Msa0812700:intron | 50.0% | |
CATGCATAGTCACCTGTGAG+GGG | - | chr5_3:43012956-43012975 | Msa0812700:intron | 50.0% | |
AAATGCACATGACCCCTCAC+AGG | + | chr5_3:43012971-43012990 | None:intergenic | 50.0% | |
CCCCTTGGATGATATACTGG+AGG | + | chr5_3:43013359-43013378 | None:intergenic | 50.0% | |
! | GCCTGTGCCAGACATTTTGT+TGG | - | chr5_3:43013534-43013553 | Msa0812700:intron | 50.0% |
! | GGAGATGGAGGCACAGAAAA+AGG | - | chr5_3:43013555-43013574 | Msa0812700:intron | 50.0% |
AGACTTGGAGAGGATCCACA+TGG | - | chr5_3:43013611-43013630 | Msa0812700:intron | 50.0% | |
AATCCACATAAGGGGCCATG+TGG | + | chr5_3:43013629-43013648 | None:intergenic | 50.0% | |
GAGTTTGACTCCATTCCAGC+TGG | + | chr5_3:43013691-43013710 | None:intergenic | 50.0% | |
GCATCATCAATCCTGGCGAT+TGG | + | chr5_3:43014322-43014341 | None:intergenic | 50.0% | |
CTCAACGGCATCATCAATCC+TGG | + | chr5_3:43014329-43014348 | None:intergenic | 50.0% | |
!! | GGATTGATGATGCCGTTGAG+CGG | - | chr5_3:43014329-43014348 | Msa0812700:intron | 50.0% |
CTTGTTCCCCAAGTGTCTCA+TGG | + | chr5_3:43014776-43014795 | None:intergenic | 50.0% | |
CATGAGACACTTGGGGAACA+AGG | - | chr5_3:43014774-43014793 | Msa0812700:CDS | 50.0% | |
GCCAAGAGAATCCTTGTTGC+TGG | - | chr5_3:43015306-43015325 | Msa0812700:intron | 50.0% | |
TCGGGTATCAATGTGGAGGA+TGG | - | chr5_3:43015346-43015365 | Msa0812700:CDS | 50.0% | |
GGATGCTGTTAAGGAAGCTG+TGG | - | chr5_3:43015516-43015535 | Msa0812700:CDS | 50.0% | |
TCACCTCCACACTCAGCATA+GGG | + | chr5_3:43015637-43015656 | None:intergenic | 50.0% | |
! | CTTTTAGCAGCATGGTTGCC+CGG | - | chr5_3:43015793-43015812 | Msa0812700:exon | 50.0% |
CTTGATCAGCCTGATAAGGG+AGG | - | chr5_3:43015907-43015926 | Msa0812700:five_prime_UTR | 50.0% | |
GATGACCCCTTATTCCCTCT+TGG | - | chr5_3:43015940-43015959 | Msa0812700:five_prime_UTR | 50.0% | |
CGAGCTTCAACCGTTTCAGC+AGG | + | chr5_3:43012389-43012408 | None:intergenic | 55.0% | |
CTGGCGCTTGAATCACGGTT+AGG | - | chr5_3:43012708-43012727 | Msa0812700:intron | 55.0% | |
TCCAAGGGGCTACCCATTTG+TGG | - | chr5_3:43013370-43013389 | Msa0812700:intron | 55.0% | |
CCTACCTCCCAGCCACAAAT+GGG | + | chr5_3:43013385-43013404 | None:intergenic | 55.0% | |
GATCCACATGGCCCCTTATG+TGG | - | chr5_3:43013623-43013642 | Msa0812700:intron | 55.0% | |
!! | CAGGAGAAGTACCAATCGCC+AGG | - | chr5_3:43014308-43014327 | Msa0812700:intron | 55.0% |
CTCTTGGCATGCCTGTCCAA+TGG | + | chr5_3:43015294-43015313 | None:intergenic | 55.0% | |
ACCTCCACACTCAGCATAGG+GGG | + | chr5_3:43015635-43015654 | None:intergenic | 55.0% | |
CACCTCCACACTCAGCATAG+GGG | + | chr5_3:43015636-43015655 | None:intergenic | 55.0% | |
GTCACCTCCACACTCAGCAT+AGG | + | chr5_3:43015638-43015657 | None:intergenic | 55.0% | |
TTGCCCGGCAGTGAAGGAAA+TGG | - | chr5_3:43015808-43015827 | Msa0812700:five_prime_UTR | 55.0% | |
! | ACGTTGGCCTCGGAGCAACT+AGG | - | chr5_3:43012805-43012824 | Msa0812700:CDS | 60.0% |
GCCACAAATGGGTAGCCCCT+TGG | + | chr5_3:43013374-43013393 | None:intergenic | 60.0% | |
AGGGGCTACCCATTTGTGGC+TGG | - | chr5_3:43013374-43013393 | Msa0812700:intron | 60.0% | |
GGGGCTACCCATTTGTGGCT+GGG | - | chr5_3:43013375-43013394 | Msa0812700:intron | 60.0% | |
GCTACCCATTTGTGGCTGGG+AGG | - | chr5_3:43013378-43013397 | Msa0812700:intron | 60.0% | |
CCCATTTGTGGCTGGGAGGT+AGG | - | chr5_3:43013382-43013401 | Msa0812700:intron | 60.0% | |
GCCTACCTCCCAGCCACAAA+TGG | + | chr5_3:43013386-43013405 | None:intergenic | 60.0% | |
TTTGTGGCTGGGAGGTAGGC+AGG | - | chr5_3:43013386-43013405 | Msa0812700:intron | 60.0% | |
GAAGCCCCCTATGCTGAGTG+TGG | - | chr5_3:43015628-43015647 | Msa0812700:intron | 60.0% | |
GCTCCGAGGCCAACGTTGTG+AGG | + | chr5_3:43012801-43012820 | None:intergenic | 65.0% | |
GCCCCCTATGCTGAGTGTGG+AGG | - | chr5_3:43015631-43015650 | Msa0812700:intron | 65.0% | |
GCATGGTTGCCCGGCAGTGA+AGG | - | chr5_3:43015802-43015821 | Msa0812700:five_prime_UTR | 65.0% | |
TGGCTGGGAGGTAGGCAGGC+AGG | - | chr5_3:43013390-43013409 | Msa0812700:intron | 70.0% | |
TGGGAGGTAGGCAGGCAGGC+AGG | - | chr5_3:43013394-43013413 | Msa0812700:intron | 70.0% | |
AGGTAGGCAGGCAGGCAGGC+AGG | - | chr5_3:43013398-43013417 | Msa0812700:intron | 70.0% | |
TAGGCAGGCAGGCAGGCAGG+AGG | - | chr5_3:43013401-43013420 | Msa0812700:intron | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5_3 | gene | 43012161 | 43016002 | 43012161 | ID=Msa0812700;Name=Msa0812700 |
chr5_3 | mRNA | 43012161 | 43016002 | 43012161 | ID=Msa0812700-mRNA-1;Parent=Msa0812700;Name=Msa0812700-mRNA-1;_AED=0.08;_eAED=0.08;_QI=204|0.75|0.44|1|1|1|9|0|609 |
chr5_3 | exon | 43012161 | 43012660 | 43012161 | ID=Msa0812700-mRNA-1:exon:13234;Parent=Msa0812700-mRNA-1 |
chr5_3 | exon | 43012755 | 43012956 | 43012755 | ID=Msa0812700-mRNA-1:exon:13233;Parent=Msa0812700-mRNA-1 |
chr5_3 | exon | 43013731 | 43013913 | 43013731 | ID=Msa0812700-mRNA-1:exon:13232;Parent=Msa0812700-mRNA-1 |
chr5_3 | exon | 43013994 | 43014098 | 43013994 | ID=Msa0812700-mRNA-1:exon:13231;Parent=Msa0812700-mRNA-1 |
chr5_3 | exon | 43014399 | 43014642 | 43014399 | ID=Msa0812700-mRNA-1:exon:13230;Parent=Msa0812700-mRNA-1 |
chr5_3 | exon | 43014764 | 43014909 | 43014764 | ID=Msa0812700-mRNA-1:exon:13229;Parent=Msa0812700-mRNA-1 |
chr5_3 | exon | 43015029 | 43015119 | 43015029 | ID=Msa0812700-mRNA-1:exon:13228;Parent=Msa0812700-mRNA-1 |
chr5_3 | exon | 43015337 | 43015544 | 43015337 | ID=Msa0812700-mRNA-1:exon:13227;Parent=Msa0812700-mRNA-1 |
chr5_3 | exon | 43015648 | 43016002 | 43015648 | ID=Msa0812700-mRNA-1:exon:13226;Parent=Msa0812700-mRNA-1 |
chr5_3 | five_prime_UTR | 43015799 | 43016002 | 43015799 | ID=Msa0812700-mRNA-1:five_prime_utr;Parent=Msa0812700-mRNA-1 |
chr5_3 | CDS | 43015648 | 43015798 | 43015648 | ID=Msa0812700-mRNA-1:cds;Parent=Msa0812700-mRNA-1 |
chr5_3 | CDS | 43015337 | 43015544 | 43015337 | ID=Msa0812700-mRNA-1:cds;Parent=Msa0812700-mRNA-1 |
chr5_3 | CDS | 43015029 | 43015119 | 43015029 | ID=Msa0812700-mRNA-1:cds;Parent=Msa0812700-mRNA-1 |
chr5_3 | CDS | 43014764 | 43014909 | 43014764 | ID=Msa0812700-mRNA-1:cds;Parent=Msa0812700-mRNA-1 |
chr5_3 | CDS | 43014399 | 43014642 | 43014399 | ID=Msa0812700-mRNA-1:cds;Parent=Msa0812700-mRNA-1 |
chr5_3 | CDS | 43013994 | 43014098 | 43013994 | ID=Msa0812700-mRNA-1:cds;Parent=Msa0812700-mRNA-1 |
chr5_3 | CDS | 43013731 | 43013913 | 43013731 | ID=Msa0812700-mRNA-1:cds;Parent=Msa0812700-mRNA-1 |
chr5_3 | CDS | 43012755 | 43012956 | 43012755 | ID=Msa0812700-mRNA-1:cds;Parent=Msa0812700-mRNA-1 |
chr5_3 | CDS | 43012161 | 43012660 | 43012161 | ID=Msa0812700-mRNA-1:cds;Parent=Msa0812700-mRNA-1 |
Gene Sequence |
Protein sequence |