AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0812700


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0812700 MtrunA17_Chr5g0429581 92.881 604 43 0 1 604 1 604 0.0 1168
Msa0812700 MtrunA17_Chr5g0429541 89.238 604 51 1 1 604 1 590 0.0 1115
Msa0812700 MtrunA17_Chr3g0104081 74.585 602 151 2 1 602 18 617 0.0 942
Msa0812700 MtrunA17_Chr6g0461191 54.651 602 260 5 5 601 28 621 0.0 681
Msa0812700 MtrunA17_Chr6g0461211 54.774 597 265 4 5 600 28 620 0.0 667
Msa0812700 MtrunA17_Chr3g0118971 53.833 600 272 4 5 603 28 623 0.0 667
Msa0812700 MtrunA17_Chr6g0461221 54.104 597 269 4 5 600 29 621 0.0 666
Msa0812700 MtrunA17_Chr2g0292341 54.606 597 266 4 5 600 30 622 0.0 665
Msa0812700 MtrunA17_Chr6g0461231 53.411 601 267 5 5 600 28 620 0.0 656
Msa0812700 MtrunA17_Chr7g0253561 53.177 598 275 4 5 601 4 597 0.0 653
Msa0812700 MtrunA17_Chr7g0253551 51.016 443 209 2 5 447 29 463 1.20e-161 470
Msa0812700 MtrunA17_Chr5g0425531 26.180 657 364 25 5 603 50 643 1.06e-40 158
Msa0812700 MtrunA17_Chr3g0115601 26.061 660 360 26 5 604 44 635 1.75e-37 148
Msa0812700 MtrunA17_Chr5g0425471 26.690 577 342 22 86 603 86 640 3.47e-37 147
Msa0812700 MtrunA17_Chr5g0425431 25.617 648 376 25 5 603 48 638 5.87e-37 147
Msa0812700 MtrunA17_Chr7g0269871 26.445 571 326 25 93 602 86 623 2.11e-36 145
Msa0812700 MtrunA17_Chr5g0425451 25.772 648 375 26 5 603 50 640 2.55e-36 145
Msa0812700 MtrunA17_Chr4g0050591 26.568 606 342 24 5 573 54 593 2.28e-34 139
Msa0812700 MtrunA17_Chr1g0194841 25.569 571 332 23 93 602 81 619 1.46e-32 133
Msa0812700 MtrunA17_Chr2g0278761 26.923 546 339 23 85 592 90 613 9.42e-31 128
Msa0812700 MtrunA17_Chr2g0294751 25.565 575 345 24 86 604 77 624 2.48e-29 123
Msa0812700 MtrunA17_Chr1g0207281 24.915 586 352 26 85 608 89 648 1.47e-28 121
Msa0812700 MtrunA17_Chr5g0411571 25.000 628 333 25 5 573 42 590 5.08e-28 119
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0812700 AT3G47000.1 69.231 598 180 4 4 600 9 603 0.0 864
Msa0812700 AT3G47040.4 66.722 601 196 3 4 603 9 606 0.0 847
Msa0812700 AT3G47010.1 66.389 601 198 3 4 603 10 607 0.0 845
Msa0812700 AT3G47010.2 66.223 601 198 4 4 603 10 606 0.0 840
Msa0812700 AT3G47040.1 64.058 626 196 4 4 603 9 631 0.0 831
Msa0812700 AT3G47050.1 66.889 601 187 5 4 600 9 601 0.0 820
Msa0812700 AT3G47040.2 61.830 634 205 6 4 603 9 639 0.0 796
Msa0812700 AT5G04885.2 54.515 598 266 5 4 600 46 638 0.0 666
Msa0812700 AT5G04885.3 54.515 598 266 5 4 600 29 621 0.0 665
Msa0812700 AT5G04885.1 54.515 598 266 5 4 600 29 621 0.0 665
Msa0812700 AT3G47000.3 70.362 442 130 1 4 445 9 449 0.0 662
Msa0812700 AT3G47010.4 67.873 442 141 1 4 445 10 450 0.0 642
Msa0812700 AT3G47040.3 67.421 442 143 1 4 445 9 449 0.0 639
Msa0812700 AT3G47000.2 69.626 428 127 3 174 600 1 426 0.0 634
Msa0812700 AT5G20950.2 52.429 597 278 5 5 600 26 617 0.0 627
Msa0812700 AT5G20950.3 52.429 597 278 5 5 600 104 695 0.0 627
Msa0812700 AT5G20950.1 52.429 597 278 5 5 600 26 617 0.0 627
Msa0812700 AT3G47010.3 65.661 431 144 3 174 603 1 428 0.0 613
Msa0812700 AT5G20940.1 51.414 601 282 6 2 600 29 621 0.0 604
Msa0812700 AT3G62710.1 46.423 629 286 14 5 600 38 648 0.0 530
Msa0812700 AT3G47050.2 67.109 377 117 2 4 377 9 381 0.0 530
Msa0812700 AT1G02640.1 26.724 580 333 24 86 604 80 628 7.20e-35 141
Msa0812700 AT5G64570.1 25.645 659 358 27 5 604 59 644 2.29e-32 133
Msa0812700 AT3G19620.1 24.578 651 377 30 5 603 41 629 2.41e-31 130
Msa0812700 AT5G09730.1 25.000 612 343 21 5 573 49 587 1.48e-30 127
Msa0812700 AT5G49360.1 24.409 635 374 26 12 602 56 628 3.45e-30 126
Msa0812700 AT5G64570.3 25.284 617 353 24 5 582 59 606 1.95e-28 120
Msa0812700 AT1G78060.1 25.940 532 328 21 86 573 74 583 3.17e-28 120
Msa0812700 AT5G10560.1 24.775 666 375 27 5 604 42 647 3.59e-28 120
Msa0812700 AT5G64570.2 26.962 497 302 22 146 604 13 486 9.39e-27 115

Find 163 sgRNAs with CRISPR-Local

Find 277 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCTTATTCCCTCTTGGTTA+TGG 0.150094 5_3:-43012195 Msa0812700:CDS
AACATGACTTCTTATGTTTC+AGG 0.155153 5_3:-43014821 Msa0812700:CDS
ACAATTTCATCTCCGTTAAA+TGG 0.168311 5_3:+43012465 None:intergenic
TTCTTAGCAGTTGCACTATT+TGG 0.179068 5_3:+43015502 None:intergenic
CCTTATTCCCTCTTGGTTAT+GGG 0.218882 5_3:-43012194 Msa0812700:CDS
GGAACAAAGTTCATAAATTA+AGG 0.234620 5_3:-43015891 Msa0812700:five_prime_UTR
CCCATAACCAAGAGGGAATA+AGG 0.250774 5_3:+43012194 None:intergenic
GGAATCACAGATGTTATCTT+TGG 0.262824 5_3:-43012312 Msa0812700:CDS
AGCAAAGATCTGTCAGTTAA+AGG 0.273779 5_3:+43013750 None:intergenic
CATGAATTCCCTCCCTTATC+AGG 0.289482 5_3:+43012225 None:intergenic
TAGTAACAGAACGTTCAATT+TGG 0.293059 5_3:+43015678 None:intergenic
GATGAATTATGTCAACCTTA+TGG 0.304645 5_3:-43014046 Msa0812700:CDS
ACCAATGGTGAAATCTTTAA+TGG 0.307869 5_3:+43015646 None:intergenic
GCATCAGTACAATAAATTAT+TGG 0.314084 5_3:+43015406 None:intergenic
ACACTTGTGATTCTGATATC+TGG 0.335621 5_3:-43012417 Msa0812700:CDS
TTTAACTGACAGATCTTTGC+TGG 0.339407 5_3:-43013748 Msa0812700:CDS
GGAGATGGAGGCACAGAAAA+AGG 0.340117 5_3:-43014586 Msa0812700:CDS
ACAAGGTGTTTCAACCATTA+TGG 0.343028 5_3:-43014485 Msa0812700:CDS
GGATGGACGTTTACTAAGTA+TGG 0.345111 5_3:-43012778 Msa0812700:CDS
GGTTGTTCCATTTCACCATT+TGG 0.349461 5_3:-43015870 Msa0812700:five_prime_UTR
GAATCACAGATGTTATCTTT+GGG 0.351585 5_3:-43012311 Msa0812700:CDS
TTTAAGATATGAAAAGTTCA+TGG 0.351598 5_3:-43013880 Msa0812700:CDS
TAATTTATGAACTTTGTTCC+AGG 0.354760 5_3:+43015894 None:intergenic
AACTATCTTGGATGCTGTTA+AGG 0.355539 5_3:-43012634 Msa0812700:CDS
CACGTCAATTCCAGCATTAA+TGG 0.357491 5_3:+43013994 None:intergenic
GGAACTCATGCTAATGATAT+CGG 0.357760 5_3:-43012814 Msa0812700:CDS
CACGGTAACAATAACGTCTA+TGG 0.361228 5_3:-43015379 Msa0812700:CDS
GTCATCTGATTGGGCTGATA+TGG 0.362204 5_3:-43015473 Msa0812700:CDS
AGGGTAAACTACCAATGAAT+TGG 0.364228 5_3:-43012275 Msa0812700:CDS
AATTTCAGGCACAACTATCT+TGG 0.364724 5_3:-43012646 Msa0812700:intron
TTATGGGCTAGCTTATAATA+AGG 0.364827 5_3:-43012178 Msa0812700:CDS
CGCTCTATGAATTCTGTTGT+TGG 0.367124 5_3:+43012570 None:intergenic
GCCTACCTCCCAGCCACAAA+TGG 0.372066 5_3:+43014758 None:intergenic
AGTCATGTTTCGGACAATTT+CGG 0.376198 5_3:+43014835 None:intergenic
AGGGGCTACCCATTTGTGGC+TGG 0.380723 5_3:-43014767 Msa0812700:CDS
AGGTCTGCAAAGATCCTAGA+TGG 0.390671 5_3:-43014889 Msa0812700:CDS
GCCAAGAGAATCCTTGTTGC+TGG 0.393682 5_3:-43012835 Msa0812700:CDS
CAATTTCATCTCCGTTAAAT+GGG 0.396571 5_3:+43012466 None:intergenic
GAACTTGTAATCCCATTTAA+CGG 0.401913 5_3:-43012477 Msa0812700:CDS
CTTTGGGGATCATGACTTCA+AGG 0.401948 5_3:-43012295 Msa0812700:CDS
CCATAACCAAGAGGGAATAA+GGG 0.403111 5_3:+43012195 None:intergenic
ATCTGGAAGACCTTTGGTCT+TGG 0.409437 5_3:-43012400 Msa0812700:CDS
TTGACGTCTTTAGTTCAATC+AGG 0.411614 5_3:-43013852 Msa0812700:CDS
GGGGCTACCCATTTGTGGCT+GGG 0.413579 5_3:-43014766 Msa0812700:CDS
GGAACAAAGTTTGTGGGAAA+AGG 0.415034 5_3:-43012379 Msa0812700:CDS
TTAGCAGTTGCACTATTTGG+TGG 0.417251 5_3:+43015505 None:intergenic
ACTCTTCTAAACCAATTCAT+TGG 0.419131 5_3:+43012264 None:intergenic
TAGCCCCTTGGATGATATAC+TGG 0.421001 5_3:+43014782 None:intergenic
TCTGATATCTGGAAGACCTT+TGG 0.421164 5_3:-43012406 Msa0812700:CDS
GTGCTATGCAATCCACATAA+GGG 0.425088 5_3:+43014506 None:intergenic
GAAAGAAAAGCTAGGCTTCA+AGG 0.425811 5_3:-43014398 Msa0812700:intron
GCCATTAAAGATTTCACCAT+TGG 0.428169 5_3:-43015647 Msa0812700:intron
AGAAGGAAGTGTCATCTGAT+TGG 0.432915 5_3:-43015483 Msa0812700:CDS
CGAGCTTCAACCGTTTCAGC+AGG 0.434983 5_3:+43015755 None:intergenic
AGGGCTTTGTGATTTCTGAC+TGG 0.436021 5_3:-43014078 Msa0812700:CDS
GCTCTATGAATTCTGTTGTT+GGG 0.437427 5_3:+43012571 None:intergenic
AGTAACAGAACGTTCAATTT+GGG 0.442472 5_3:+43015679 None:intergenic
GATGACCCCTTATTCCCTCT+TGG 0.445616 5_3:-43012201 Msa0812700:CDS
ATGACTTTGAAAGAGAAGAT+TGG 0.449827 5_3:-43015710 Msa0812700:CDS
TCATAGCATCTTCCCCATCT+AGG 0.450563 5_3:+43014875 None:intergenic
AAACATAAGAAGTCATGTTT+CGG 0.451306 5_3:+43014825 None:intergenic
TATTGTACTGATGCTATTCA+CGG 0.453578 5_3:-43015397 Msa0812700:CDS
TGAAGCAGTTCGAAAGTCAT+TGG 0.454495 5_3:-43012914 Msa0812700:CDS
GATTCCATTTCCTTCACTGC+CGG 0.456035 5_3:+43012329 None:intergenic
TTTCCTCACAACGTTGGCCT+CGG 0.456574 5_3:-43015346 Msa0812700:CDS
AGATCTTTGCTGGATATTGT+TGG 0.459020 5_3:-43013738 Msa0812700:CDS
TCCATCTCCAACAAAATGTC+TGG 0.459864 5_3:+43014600 None:intergenic
GAAGGAAGTGTCATCTGATT+GGG 0.460679 5_3:-43015482 Msa0812700:CDS
GGTCTTGGAACAAAGTTTGT+GGG 0.461051 5_3:-43012385 Msa0812700:CDS
ACAGCTTGATCAGCCTGATA+AGG 0.465072 5_3:-43012238 Msa0812700:CDS
AAATAGTGCAACTGCTAAGA+AGG 0.470452 5_3:-43015500 Msa0812700:CDS
CAGCTTGATCAGCCTGATAA+GGG 0.470886 5_3:-43012237 Msa0812700:CDS
AAACCTAACCAATTGTGATC+TGG 0.474654 5_3:+43012746 None:intergenic
TGTGCTATGCAATCCACATA+AGG 0.474975 5_3:+43014505 None:intergenic
GATCCACATGGCCCCTTATG+TGG 0.475386 5_3:-43014518 Msa0812700:CDS
TTGATGTCCAAATGGTGAAA+TGG 0.475445 5_3:+43015863 None:intergenic
GATATCAGAATCACAAGTGT+TGG 0.476636 5_3:+43012420 None:intergenic
GGGCTTTGTGATTTCTGACT+GGG 0.478563 5_3:-43014077 Msa0812700:CDS
TGGTCTTGGAACAAAGTTTG+TGG 0.481571 5_3:-43012386 Msa0812700:CDS
TGCCTGTCCAATGGAAGAAA+AGG 0.485220 5_3:+43012859 None:intergenic
TCCAAGGGGCTACCCATTTG+TGG 0.486656 5_3:-43014771 Msa0812700:CDS
TCTAGTGGCCAGATCACAAT+TGG 0.486949 5_3:-43012754 Msa0812700:intron
GTCTCATATTCCAGCTGGAA+TGG 0.487762 5_3:-43014463 Msa0812700:CDS
TCACCTCCACACTCAGCATA+GGG 0.490280 5_3:+43012507 None:intergenic
GCCACAAATGGGTAGCCCCT+TGG 0.496947 5_3:+43014770 None:intergenic
ATTCCATTTCCTTCACTGCC+GGG 0.497220 5_3:+43012330 None:intergenic
TCCAGCAACAAGGATTCTCT+TGG 0.497425 5_3:+43012834 None:intergenic
AATTTATGAACTTTGTTCCA+GGG 0.498816 5_3:+43015895 None:intergenic
GAACTCATGCTAATGATATC+GGG 0.502550 5_3:-43012813 Msa0812700:CDS
GATTGGGCTGATATGGTTGA+CGG 0.503500 5_3:-43015466 Msa0812700:CDS
CTCAACGGCATCATCAATCC+TGG 0.511342 5_3:+43013815 None:intergenic
TTATGGTCTCATATTCCAGC+TGG 0.513411 5_3:-43014468 Msa0812700:CDS
ATATCTACTTCCATTAATGC+TGG 0.513950 5_3:-43014004 Msa0812700:CDS
ATATCAGAATCACAAGTGTT+GGG 0.514399 5_3:+43012421 None:intergenic
TAACGATAATCTGAACCATA+AGG 0.514827 5_3:+43014031 None:intergenic
GCATGGTTGCCCGGCAGTGA+AGG 0.515743 5_3:-43012339 Msa0812700:CDS
TTGCCCGGCAGTGAAGGAAA+TGG 0.516306 5_3:-43012333 Msa0812700:CDS
CTGGCGCTTGAATCACGGTT+AGG 0.517230 5_3:-43015433 Msa0812700:CDS
CCTACCTCCCAGCCACAAAT+GGG 0.519639 5_3:+43014759 None:intergenic
GAGTTTGACTCCATTCCAGC+TGG 0.521515 5_3:+43014453 None:intergenic
TTTGTGATTTCTGACTGGGA+GGG 0.522660 5_3:-43014073 Msa0812700:CDS
TATAATAAAAGTGCATGCCC+TGG 0.522855 5_3:-43015912 Msa0812700:five_prime_UTR
TCACTTGAACTTAGAGCAAG+TGG 0.523247 5_3:-43015060 Msa0812700:CDS
AATGGAAGAAAAGGTTTACT+AGG 0.526264 5_3:+43012868 None:intergenic
CAGGAGAAGTACCAATCGCC+AGG 0.527965 5_3:-43013833 Msa0812700:CDS
CTGCAGAGTTGATGTCCAAA+TGG 0.534421 5_3:+43015855 None:intergenic
GCTGGATATTGTTGGTTGCA+AGG 0.536491 5_3:-43013730 Msa0812700:intron
GCTGGAATATGAGACCATAA+TGG 0.546993 5_3:+43014471 None:intergenic
CTCTTGGCATGCCTGTCCAA+TGG 0.548749 5_3:+43012850 None:intergenic
AACCTCCAGTATATCATCCA+AGG 0.551622 5_3:-43014787 Msa0812700:CDS
TCTTATGTTTCAGGTTTGCA+AGG 0.552090 5_3:-43014812 Msa0812700:CDS
GTGAAATCTTTAATGGCAGA+AGG 0.554246 5_3:+43015653 None:intergenic
TCAAAGTCATAAGAGAAAGA+AGG 0.555741 5_3:+43015723 None:intergenic
TCGGGTATCAATGTGGAGGA+TGG 0.556709 5_3:-43012795 Msa0812700:CDS
TTGGATGATATACTGGAGGT+TGG 0.558262 5_3:+43014789 None:intergenic
GTATATGAATCCTGCTGAAA+CGG 0.566527 5_3:-43015765 Msa0812700:CDS
CTTTGTGATTTCTGACTGGG+AGG 0.572095 5_3:-43014074 Msa0812700:CDS
TCCAACAAAATGTCTGGCAC+AGG 0.572984 5_3:+43014606 None:intergenic
GGCTTCACCAATAGCAACAA+TGG 0.575663 5_3:+43012530 None:intergenic
GCATCATCAATCCTGGCGAT+TGG 0.576765 5_3:+43013822 None:intergenic
GGATGCTGTTAAGGAAGCTG+TGG 0.579903 5_3:-43012625 Msa0812700:CDS
CAAGAACTAAGTCAGTTACA+TGG 0.580003 5_3:-43015795 Msa0812700:exon
AGAAGCTGGCGCTTGAATCA+CGG 0.580598 5_3:-43015438 Msa0812700:CDS
CACTCTTAAAATCCGCTCAA+CGG 0.581745 5_3:+43013800 None:intergenic
GCTACCCATTTGTGGCTGGG+AGG 0.583997 5_3:-43014763 Msa0812700:intron
ACCTCCAGTATATCATCCAA+GGG 0.585009 5_3:-43014786 Msa0812700:CDS
GGTCTGCAAAGATCCTAGAT+GGG 0.587399 5_3:-43014888 Msa0812700:CDS
GTCACCTCCACACTCAGCAT+AGG 0.590732 5_3:+43012506 None:intergenic
GCTCCGAGGCCAACGTTGTG+AGG 0.591912 5_3:+43015343 None:intergenic
ACTATATTTCCTCACAACGT+TGG 0.594556 5_3:-43015352 Msa0812700:CDS
ACCTCCACACTCAGCATAGG+GGG 0.603901 5_3:+43012509 None:intergenic
TGCTATGCAATCCACATAAG+GGG 0.605461 5_3:+43014507 None:intergenic
TAGCATGAGTTCCAGCAACA+AGG 0.605520 5_3:+43012824 None:intergenic
TATATTATCATATCAAGACT+TGG 0.606963 5_3:-43014545 Msa0812700:CDS
TTTGGGGATCATGACTTCAA+GGG 0.607727 5_3:-43012294 Msa0812700:CDS
CATTAATGCTGGAATTGACG+TGG 0.608796 5_3:-43013993 Msa0812700:intron
TTTACTAAGTATGGATCTAG+TGG 0.609477 5_3:-43012769 Msa0812700:CDS
TGGAATGGAGTCAAACTCCA+TGG 0.613942 5_3:-43014448 Msa0812700:CDS
TAATTAGTACTTCAGGAACA+AGG 0.614183 5_3:-43014635 Msa0812700:intron
AATCACAGATGTTATCTTTG+GGG 0.616261 5_3:-43012310 Msa0812700:CDS
AAACTTTGTTCCAAGACCAA+AGG 0.622449 5_3:+43012390 None:intergenic
CATAACCAAGAGGGAATAAG+GGG 0.624050 5_3:+43012196 None:intergenic
TTGATCAGCCTGATAAGGGA+GGG 0.629383 5_3:-43012233 Msa0812700:CDS
CTTGATCAGCCTGATAAGGG+AGG 0.634857 5_3:-43012234 Msa0812700:CDS
TATCATATCAAGACTTGGAG+AGG 0.635186 5_3:-43014540 Msa0812700:CDS
ACGTTGGCCTCGGAGCAACT+AGG 0.636583 5_3:-43015336 Msa0812700:intron
AAGCTAGCCCATAACCAAGA+GGG 0.637396 5_3:+43012187 None:intergenic
GGATTGATGATGCCGTTGAG+CGG 0.645720 5_3:-43013812 Msa0812700:CDS
AGATGCCTTACAGATACACT+AGG 0.649143 5_3:+43015018 None:intergenic
CACCTCCACACTCAGCATAG+GGG 0.652884 5_3:+43012508 None:intergenic
AATGATATCGGGTATCAATG+TGG 0.657905 5_3:-43012802 Msa0812700:CDS
GTCTGCAAAGATCCTAGATG+GGG 0.658282 5_3:-43014887 Msa0812700:CDS
CCCCTTGGATGATATACTGG+AGG 0.660609 5_3:+43014785 None:intergenic
TTCAGCAGGATTCATATACA+CGG 0.662584 5_3:+43015769 None:intergenic
TAATCAGAAAGCGATGACCA+TGG 0.669304 5_3:+43014431 None:intergenic
GATATCGGGTATCAATGTGG+AGG 0.677226 5_3:-43012799 Msa0812700:CDS
GATGCTGTTAAGGAAGCTGT+GGG 0.680700 5_3:-43012624 Msa0812700:CDS
TAAGCTAGCCCATAACCAAG+AGG 0.693183 5_3:+43012186 None:intergenic
TATGTGGATTGCATAGCACA+AGG 0.701412 5_3:-43014502 Msa0812700:CDS
AATCCACATAAGGGGCCATG+TGG 0.706935 5_3:+43014515 None:intergenic
AGACTTGGAGAGGATCCACA+TGG 0.730403 5_3:-43014530 Msa0812700:CDS
ACACAAACCTAGTTGCTCCG+AGG 0.747671 5_3:+43015329 None:intergenic
CCTCCAGTATATCATCCAAG+GGG 0.747739 5_3:-43014785 Msa0812700:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAAAAAATAAGAAACTTT+CGG + chr5_3:43012206-43012225 None:intergenic 10.0%
!!! AAGTATTGATTTTTTTAAAA+CGG + chr5_3:43013443-43013462 None:intergenic 10.0%
!! ATTAATTAATTTAACAAGTT+TGG - chr5_3:43014860-43014879 Msa0812700:CDS 10.0%
!! TTAATTAATTTAACAAGTTT+GGG - chr5_3:43014861-43014880 Msa0812700:CDS 10.0%
!! AGGTTAAAATAAAAATGATA+AGG + chr5_3:43012847-43012866 None:intergenic 15.0%
!!! ATTGATAGTATTTATATAGA+AGG + chr5_3:43015049-43015068 None:intergenic 15.0%
!! TAAGAAATGAAAGTAGTATA+AGG + chr5_3:43012552-43012571 None:intergenic 20.0%
!!! AAGCTTTGATTTTTCATTAT+TGG - chr5_3:43013006-43013025 Msa0812700:intron 20.0%
!! TCAATAACAAATTCAAAAGT+TGG + chr5_3:43013152-43013171 None:intergenic 20.0%
!! TATATTATCATATCAAGACT+TGG - chr5_3:43013596-43013615 Msa0812700:intron 20.0%
!!! TAGATTATTTTTTCTCTTTC+TGG - chr5_3:43013766-43013785 Msa0812700:CDS 20.0%
!! AGATATGTTAAAATATCATG+GGG + chr5_3:43014188-43014207 None:intergenic 20.0%
!! CAGATATGTTAAAATATCAT+GGG + chr5_3:43014189-43014208 None:intergenic 20.0%
!!! ATGAACTTTTCATATCTTAA+AGG + chr5_3:43014262-43014281 None:intergenic 20.0%
!!! TTTAAGATATGAAAAGTTCA+TGG - chr5_3:43014261-43014280 Msa0812700:intron 20.0%
!! AAAACGACTTATTAAAACTT+GGG - chr5_3:43014809-43014828 Msa0812700:CDS 20.0%
!!! GTATAGGTACTTTTAATTAA+GGG + chr5_3:43014957-43014976 None:intergenic 20.0%
!!! AGTATAGGTACTTTTAATTA+AGG + chr5_3:43014958-43014977 None:intergenic 20.0%
! AATTTATGAACTTTGTTCCA+GGG + chr5_3:43012249-43012268 None:intergenic 25.0%
! TAATTTATGAACTTTGTTCC+AGG + chr5_3:43012250-43012269 None:intergenic 25.0%
! GGAACAAAGTTCATAAATTA+AGG - chr5_3:43012250-43012269 Msa0812700:CDS 25.0%
! ACTACTTTCATTTCTTAGTA+TGG - chr5_3:43012555-43012574 Msa0812700:CDS 25.0%
! GCATCAGTACAATAAATTAT+TGG + chr5_3:43012738-43012757 None:intergenic 25.0%
! ATTGGAAAGATGCAAATTAA+AGG + chr5_3:43012867-43012886 None:intergenic 25.0%
! ACTTGCATATATGAATGAAT+AGG - chr5_3:43013232-43013251 Msa0812700:intron 25.0%
! AAACATAAGAAGTCATGTTT+CGG + chr5_3:43013319-43013338 None:intergenic 25.0%
! ATACTTCTAATTAGTACTTC+AGG - chr5_3:43013499-43013518 Msa0812700:intron 25.0%
!!! GATATTTTGAAAGAAAAGCT+AGG - chr5_3:43013735-43013754 Msa0812700:CDS 25.0%
! AAATCTAATAGAACTAGATC+AGG - chr5_3:43013897-43013916 Msa0812700:intron 25.0%
! GCAGATATGTTAAAATATCA+TGG + chr5_3:43014190-43014209 None:intergenic 25.0%
! ATATATTCGTGAATATATGC+AGG - chr5_3:43014228-43014247 Msa0812700:intron 25.0%
! GTCGTAATAACTATATTTGA+GGG + chr5_3:43014576-43014595 None:intergenic 25.0%
! GAAAACGACTTATTAAAACT+TGG - chr5_3:43014808-43014827 Msa0812700:CDS 25.0%
! AAACGACTTATTAAAACTTG+GGG - chr5_3:43014810-43014829 Msa0812700:CDS 25.0%
!!! AATTAAGGGTTTTTTGTGAA+CGG + chr5_3:43014943-43014962 None:intergenic 25.0%
! AGTATTTATATAGAAGGAGA+GGG + chr5_3:43015043-43015062 None:intergenic 25.0%
! TAGTATTTATATAGAAGGAG+AGG + chr5_3:43015044-43015063 None:intergenic 25.0%
TCAAAGTCATAAGAGAAAGA+AGG + chr5_3:43012421-43012440 None:intergenic 30.0%
! ATGACTTTGAAAGAGAAGAT+TGG - chr5_3:43012431-43012450 Msa0812700:CDS 30.0%
AGTAACAGAACGTTCAATTT+GGG + chr5_3:43012465-43012484 None:intergenic 30.0%
TAGTAACAGAACGTTCAATT+TGG + chr5_3:43012466-43012485 None:intergenic 30.0%
ACCAATGGTGAAATCTTTAA+TGG + chr5_3:43012498-43012517 None:intergenic 30.0%
! TCCTTGTATTTTGCAACTAA+GGG - chr5_3:43012598-43012617 Msa0812700:CDS 30.0%
! TATTGTACTGATGCTATTCA+CGG - chr5_3:43012744-43012763 Msa0812700:intron 30.0%
!!! CATCTTTCCAATTTTAGCTA+TGG - chr5_3:43012875-43012894 Msa0812700:CDS 30.0%
!! GCATGTTTGTATTGACTTAT+AGG - chr5_3:43012904-43012923 Msa0812700:CDS 30.0%
AACATGACTTCTTATGTTTC+AGG - chr5_3:43013320-43013339 Msa0812700:intron 30.0%
! TTTTGACAAAGATGTATGCA+TGG + chr5_3:43013471-43013490 None:intergenic 30.0%
TAATTAGTACTTCAGGAACA+AGG - chr5_3:43013506-43013525 Msa0812700:intron 30.0%
! ACAGAAAAAGGTGTAAATGA+GGG - chr5_3:43013567-43013586 Msa0812700:intron 30.0%
! GGAAATTGATCTTTTATCGA+TGG - chr5_3:43013787-43013806 Msa0812700:CDS 30.0%
! TTTTAACAGCTTCATCATAC+TGG + chr5_3:43013880-43013899 None:intergenic 30.0%
! TAAGATCAATTTTCCACTGT+AGG - chr5_3:43014043-43014062 Msa0812700:CDS 30.0%
! AAGATCAATTTTCCACTGTA+GGG - chr5_3:43014044-43014063 Msa0812700:CDS 30.0%
GATGAATTATGTCAACCTTA+TGG - chr5_3:43014095-43014114 Msa0812700:intron 30.0%
TAACGATAATCTGAACCATA+AGG + chr5_3:43014113-43014132 None:intergenic 30.0%
ATATCTACTTCCATTAATGC+TGG - chr5_3:43014137-43014156 Msa0812700:intron 30.0%
GTGCATAGTAAATCATAACA+GGG + chr5_3:43014528-43014547 None:intergenic 30.0%
AGTGCATAGTAAATCATAAC+AGG + chr5_3:43014529-43014548 None:intergenic 30.0%
GGTCGTAATAACTATATTTG+AGG + chr5_3:43014577-43014596 None:intergenic 30.0%
GTATACGTATCATATTTGAG+AGG + chr5_3:43014598-43014617 None:intergenic 30.0%
TATACTACTCAAAACCGAAA+GGG - chr5_3:43014613-43014632 Msa0812700:CDS 30.0%
!! AAATAAAAGTTTCTGAGGCA+TGG + chr5_3:43014707-43014726 None:intergenic 30.0%
! ATGCCTCAGAAACTTTTATT+TGG - chr5_3:43014706-43014725 Msa0812700:intron 30.0%
ACACCAAATAAAAGTTTCTG+AGG + chr5_3:43014712-43014731 None:intergenic 30.0%
!!! AGTACTGATTTTGTGATGAA+TGG + chr5_3:43014997-43015016 None:intergenic 30.0%
ATTGTAAAAATACCCCACAT+TGG + chr5_3:43015085-43015104 None:intergenic 30.0%
!! ACTAGTTCTATCCAATATGT+GGG - chr5_3:43015120-43015139 Msa0812700:intron 30.0%
!! AATTTGTTAGAACACAAGTG+TGG + chr5_3:43015177-43015196 None:intergenic 30.0%
!! TCATTGGTTCTGTTGAAAAA+CGG - chr5_3:43015243-43015262 Msa0812700:intron 30.0%
AATGGAAGAAAAGGTTTACT+AGG + chr5_3:43015276-43015295 None:intergenic 30.0%
! TAGTAAACCTTTTCTTCCAT+TGG - chr5_3:43015275-43015294 Msa0812700:intron 30.0%
TTTACTAAGTATGGATCTAG+TGG - chr5_3:43015372-43015391 Msa0812700:CDS 30.0%
CTTTATATGCACTCAATTTC+AGG - chr5_3:43015481-43015500 Msa0812700:CDS 30.0%
GAACTTGTAATCCCATTTAA+CGG - chr5_3:43015664-43015683 Msa0812700:CDS 30.0%
CAATTTCATCTCCGTTAAAT+GGG + chr5_3:43015678-43015697 None:intergenic 30.0%
ACAATTTCATCTCCGTTAAA+TGG + chr5_3:43015679-43015698 None:intergenic 30.0%
ATATCAGAATCACAAGTGTT+GGG + chr5_3:43015723-43015742 None:intergenic 30.0%
GAATCACAGATGTTATCTTT+GGG - chr5_3:43015830-43015849 Msa0812700:five_prime_UTR 30.0%
AATCACAGATGTTATCTTTG+GGG - chr5_3:43015831-43015850 Msa0812700:five_prime_UTR 30.0%
ACTCTTCTAAACCAATTCAT+TGG + chr5_3:43015880-43015899 None:intergenic 30.0%
!! TTATGGGCTAGCTTATAATA+AGG - chr5_3:43015963-43015982 Msa0812700:five_prime_UTR 30.0%
! TATAATAAAAGTGCATGCCC+TGG - chr5_3:43012229-43012248 Msa0812700:CDS 35.0%
TTGATGTCCAAATGGTGAAA+TGG + chr5_3:43012281-43012300 None:intergenic 35.0%
CAAGAACTAAGTCAGTTACA+TGG - chr5_3:43012346-43012365 Msa0812700:CDS 35.0%
TTCAGCAGGATTCATATACA+CGG + chr5_3:43012375-43012394 None:intergenic 35.0%
GTATATGAATCCTGCTGAAA+CGG - chr5_3:43012376-43012395 Msa0812700:CDS 35.0%
GTGAAATCTTTAATGGCAGA+AGG + chr5_3:43012491-43012510 None:intergenic 35.0%
GCCATTAAAGATTTCACCAT+TGG - chr5_3:43012494-43012513 Msa0812700:CDS 35.0%
!! GTAGATAGTAAGAGTACCAA+TGG + chr5_3:43012513-43012532 None:intergenic 35.0%
! CTCCTTGTATTTTGCAACTA+AGG - chr5_3:43012597-43012616 Msa0812700:CDS 35.0%
TCCCTTAGTTGCAAAATACA+AGG + chr5_3:43012602-43012621 None:intergenic 35.0%
TTCTTAGCAGTTGCACTATT+TGG + chr5_3:43012642-43012661 None:intergenic 35.0%
AAATAGTGCAACTGCTAAGA+AGG - chr5_3:43012641-43012660 Msa0812700:CDS 35.0%
ACTATATTTCCTCACAACGT+TGG - chr5_3:43012789-43012808 Msa0812700:CDS 35.0%
CCTTTGTCCATAGCTAAAAT+TGG + chr5_3:43012885-43012904 None:intergenic 35.0%
!!! CCAATTTTAGCTATGGACAA+AGG - chr5_3:43012882-43012901 Msa0812700:CDS 35.0%
! ATGCAAGTGAGTTTTACATC+TGG + chr5_3:43013220-43013239 None:intergenic 35.0%
AGTCATGTTTCGGACAATTT+CGG + chr5_3:43013309-43013328 None:intergenic 35.0%
!! TCTTATGTTTCAGGTTTGCA+AGG - chr5_3:43013329-43013348 Msa0812700:intron 35.0%
! CACAGAAAAAGGTGTAAATG+AGG - chr5_3:43013566-43013585 Msa0812700:intron 35.0%
! CAGAAAAAGGTGTAAATGAG+GGG - chr5_3:43013568-43013587 Msa0812700:intron 35.0%
TATCATATCAAGACTTGGAG+AGG - chr5_3:43013601-43013620 Msa0812700:intron 35.0%
! ACAAGGTGTTTCAACCATTA+TGG - chr5_3:43013656-43013675 Msa0812700:intron 35.0%
! TTGACGTCTTTAGTTCAATC+AGG - chr5_3:43014289-43014308 Msa0812700:intron 35.0%
AGCAAAGATCTGTCAGTTAA+AGG + chr5_3:43014394-43014413 None:intergenic 35.0%
TTTAACTGACAGATCTTTGC+TGG - chr5_3:43014393-43014412 Msa0812700:intron 35.0%
AGATCTTTGCTGGATATTGT+TGG - chr5_3:43014403-43014422 Msa0812700:CDS 35.0%
GTATACTACTCAAAACCGAA+AGG - chr5_3:43014612-43014631 Msa0812700:CDS 35.0%
CTCTCTTCTTATATCCCTTT+CGG + chr5_3:43014630-43014649 None:intergenic 35.0%
AACTCATTAACACAAGCCAA+AGG - chr5_3:43014661-43014680 Msa0812700:intron 35.0%
ACTCATTAACACAAGCCAAA+GGG - chr5_3:43014662-43014681 Msa0812700:intron 35.0%
CACAAAATCAGTACTCCAAA+TGG - chr5_3:43015002-43015021 Msa0812700:intron 35.0%
TGTATGTGATCTATCCAATG+TGG - chr5_3:43015068-43015087 Msa0812700:CDS 35.0%
GTATGTGATCTATCCAATGT+GGG - chr5_3:43015069-43015088 Msa0812700:CDS 35.0%
TATGTGATCTATCCAATGTG+GGG - chr5_3:43015070-43015089 Msa0812700:CDS 35.0%
!! CACTAGTTCTATCCAATATG+TGG - chr5_3:43015119-43015138 Msa0812700:intron 35.0%
GGAACTCATGCTAATGATAT+CGG - chr5_3:43015327-43015346 Msa0812700:intron 35.0%
GAACTCATGCTAATGATATC+GGG - chr5_3:43015328-43015347 Msa0812700:intron 35.0%
AATGATATCGGGTATCAATG+TGG - chr5_3:43015339-43015358 Msa0812700:CDS 35.0%
AAACCTAACCAATTGTGATC+TGG + chr5_3:43015398-43015417 None:intergenic 35.0%
AATTTCAGGCACAACTATCT+TGG - chr5_3:43015495-43015514 Msa0812700:CDS 35.0%
AACTATCTTGGATGCTGTTA+AGG - chr5_3:43015507-43015526 Msa0812700:CDS 35.0%
GCTCTATGAATTCTGTTGTT+GGG + chr5_3:43015573-43015592 None:intergenic 35.0%
! TCTTTTGCCATTGTTGCTAT+TGG - chr5_3:43015604-43015623 Msa0812700:intron 35.0%
GATATCAGAATCACAAGTGT+TGG + chr5_3:43015724-43015743 None:intergenic 35.0%
ACACTTGTGATTCTGATATC+TGG - chr5_3:43015724-43015743 Msa0812700:CDS 35.0%
AAACTTTGTTCCAAGACCAA+AGG + chr5_3:43015754-43015773 None:intergenic 35.0%
GGAATCACAGATGTTATCTT+TGG - chr5_3:43015829-43015848 Msa0812700:five_prime_UTR 35.0%
AGGGTAAACTACCAATGAAT+TGG - chr5_3:43015866-43015885 Msa0812700:five_prime_UTR 35.0%
GGTTGTTCCATTTCACCATT+TGG - chr5_3:43012271-43012290 Msa0812700:CDS 40.0%
TTAGCAGTTGCACTATTTGG+TGG + chr5_3:43012639-43012658 None:intergenic 40.0%
!! AGAAGGAAGTGTCATCTGAT+TGG - chr5_3:43012658-43012677 Msa0812700:intron 40.0%
!! GAAGGAAGTGTCATCTGATT+GGG - chr5_3:43012659-43012678 Msa0812700:intron 40.0%
CACGGTAACAATAACGTCTA+TGG - chr5_3:43012762-43012781 Msa0812700:CDS 40.0%
TCACTTGAACTTAGAGCAAG+TGG - chr5_3:43013081-43013100 Msa0812700:intron 40.0%
TAGCTCCTAGTGTATCTGTA+AGG - chr5_3:43013118-43013137 Msa0812700:intron 40.0%
AGATGCCTTACAGATACACT+AGG + chr5_3:43013126-43013145 None:intergenic 40.0%
TTGGATGATATACTGGAGGT+TGG + chr5_3:43013355-43013374 None:intergenic 40.0%
AACCTCCAGTATATCATCCA+AGG - chr5_3:43013354-43013373 Msa0812700:intron 40.0%
ACCTCCAGTATATCATCCAA+GGG - chr5_3:43013355-43013374 Msa0812700:intron 40.0%
TCCATCTCCAACAAAATGTC+TGG + chr5_3:43013544-43013563 None:intergenic 40.0%
! AGACATTTTGTTGGAGATGG+AGG - chr5_3:43013543-43013562 Msa0812700:intron 40.0%
TGCTATGCAATCCACATAAG+GGG + chr5_3:43013637-43013656 None:intergenic 40.0%
GTGCTATGCAATCCACATAA+GGG + chr5_3:43013638-43013657 None:intergenic 40.0%
TGTGCTATGCAATCCACATA+AGG + chr5_3:43013639-43013658 None:intergenic 40.0%
! TATGTGGATTGCATAGCACA+AGG - chr5_3:43013639-43013658 Msa0812700:intron 40.0%
GCTGGAATATGAGACCATAA+TGG + chr5_3:43013673-43013692 None:intergenic 40.0%
TTATGGTCTCATATTCCAGC+TGG - chr5_3:43013673-43013692 Msa0812700:intron 40.0%
TAATCAGAAAGCGATGACCA+TGG + chr5_3:43013713-43013732 None:intergenic 40.0%
GAAAGAAAAGCTAGGCTTCA+AGG - chr5_3:43013743-43013762 Msa0812700:CDS 40.0%
TTTGTGATTTCTGACTGGGA+GGG - chr5_3:43014068-43014087 Msa0812700:CDS 40.0%
CACGTCAATTCCAGCATTAA+TGG + chr5_3:43014150-43014169 None:intergenic 40.0%
CATTAATGCTGGAATTGACG+TGG - chr5_3:43014148-43014167 Msa0812700:intron 40.0%
TCGTGAATATATGCAGGTGA+TGG - chr5_3:43014234-43014253 Msa0812700:intron 40.0%
CACTCTTAAAATCCGCTCAA+CGG + chr5_3:43014344-43014363 None:intergenic 40.0%
CAAGGTAAGTGAAGTTTAGC+TGG - chr5_3:43014429-43014448 Msa0812700:CDS 40.0%
! TTTTTCTTCCCTTCTCCCTT+TGG + chr5_3:43014680-43014699 None:intergenic 40.0%
AACTGATCCATGAGACACTT+GGG - chr5_3:43014766-43014785 Msa0812700:CDS 40.0%
CGACTTATTAAAACTTGGGG+AGG - chr5_3:43014813-43014832 Msa0812700:CDS 40.0%
!! TATATCTTACGCGCTGATTG+AGG + chr5_3:43014916-43014935 None:intergenic 40.0%
GTTCGTAATCACGACAGTAT+AGG + chr5_3:43014973-43014992 None:intergenic 40.0%
TACTCCAAATGGCTCAATCT+TGG - chr5_3:43015013-43015032 Msa0812700:intron 40.0%
ACTCCAAATGGCTCAATCTT+GGG - chr5_3:43015014-43015033 Msa0812700:intron 40.0%
TCTATCCAATATGTGGGACT+TGG - chr5_3:43015126-43015145 Msa0812700:intron 40.0%
AAACACCAAGTCCCACATAT+TGG + chr5_3:43015134-43015153 None:intergenic 40.0%
CAAGTGTGGCAATTGAAAGT+TGG + chr5_3:43015163-43015182 None:intergenic 40.0%
TGAAGCAGTTCGAAAGTCAT+TGG - chr5_3:43015227-43015246 Msa0812700:intron 40.0%
GGTTCTGTTGAAAAACGGAA+AGG - chr5_3:43015248-43015267 Msa0812700:intron 40.0%
! AACCTTTTCTTCCATTGGAC+AGG - chr5_3:43015280-43015299 Msa0812700:intron 40.0%
GGATGGACGTTTACTAAGTA+TGG - chr5_3:43015363-43015382 Msa0812700:CDS 40.0%
CGCTCTATGAATTCTGTTGT+TGG + chr5_3:43015574-43015593 None:intergenic 40.0%
TCTGATATCTGGAAGACCTT+TGG - chr5_3:43015735-43015754 Msa0812700:CDS 40.0%
! TGGTCTTGGAACAAAGTTTG+TGG - chr5_3:43015755-43015774 Msa0812700:CDS 40.0%
GGTCTTGGAACAAAGTTTGT+GGG - chr5_3:43015756-43015775 Msa0812700:CDS 40.0%
GGAACAAAGTTTGTGGGAAA+AGG - chr5_3:43015762-43015781 Msa0812700:CDS 40.0%
! TAGAAGCTCTTTTAGCAGCA+TGG - chr5_3:43015785-43015804 Msa0812700:exon 40.0%
TTTGGGGATCATGACTTCAA+GGG - chr5_3:43015847-43015866 Msa0812700:five_prime_UTR 40.0%
CATAACCAAGAGGGAATAAG+GGG + chr5_3:43015948-43015967 None:intergenic 40.0%
CCATAACCAAGAGGGAATAA+GGG + chr5_3:43015949-43015968 None:intergenic 40.0%
CCTTATTCCCTCTTGGTTAT+GGG - chr5_3:43015947-43015966 Msa0812700:five_prime_UTR 40.0%
!! CTGCAGAGTTGATGTCCAAA+TGG + chr5_3:43012289-43012308 None:intergenic 45.0%
GTCATCTGATTGGGCTGATA+TGG - chr5_3:43012668-43012687 Msa0812700:intron 45.0%
GATTGGGCTGATATGGTTGA+CGG - chr5_3:43012675-43012694 Msa0812700:intron 45.0%
AGGTCTGCAAAGATCCTAGA+TGG - chr5_3:43013252-43013271 Msa0812700:intron 45.0%
GGTCTGCAAAGATCCTAGAT+GGG - chr5_3:43013253-43013272 Msa0812700:intron 45.0%
GTCTGCAAAGATCCTAGATG+GGG - chr5_3:43013254-43013273 Msa0812700:intron 45.0%
TCATAGCATCTTCCCCATCT+AGG + chr5_3:43013269-43013288 None:intergenic 45.0%
CCTCCAGTATATCATCCAAG+GGG - chr5_3:43013356-43013375 Msa0812700:intron 45.0%
TAGCCCCTTGGATGATATAC+TGG + chr5_3:43013362-43013381 None:intergenic 45.0%
TCCAACAAAATGTCTGGCAC+AGG + chr5_3:43013538-43013557 None:intergenic 45.0%
! GCCAGACATTTTGTTGGAGA+TGG - chr5_3:43013540-43013559 Msa0812700:intron 45.0%
GTCTCATATTCCAGCTGGAA+TGG - chr5_3:43013678-43013697 Msa0812700:intron 45.0%
TGGAATGGAGTCAAACTCCA+TGG - chr5_3:43013693-43013712 Msa0812700:intron 45.0%
GAAATCACAAAGCCCTACAG+TGG + chr5_3:43014059-43014078 None:intergenic 45.0%
! AGGGCTTTGTGATTTCTGAC+TGG - chr5_3:43014063-43014082 Msa0812700:CDS 45.0%
! GGGCTTTGTGATTTCTGACT+GGG - chr5_3:43014064-43014083 Msa0812700:CDS 45.0%
CTTTGTGATTTCTGACTGGG+AGG - chr5_3:43014067-43014086 Msa0812700:CDS 45.0%
! GCTGGATATTGTTGGTTGCA+AGG - chr5_3:43014411-43014430 Msa0812700:CDS 45.0%
TAACACAAGCCAAAGGGAGA+AGG - chr5_3:43014668-43014687 Msa0812700:intron 45.0%
AACACAAGCCAAAGGGAGAA+GGG - chr5_3:43014669-43014688 Msa0812700:intron 45.0%
CAACTGATCCATGAGACACT+TGG - chr5_3:43014765-43014784 Msa0812700:CDS 45.0%
ACTGATCCATGAGACACTTG+GGG - chr5_3:43014767-43014786 Msa0812700:CDS 45.0%
ACTCCCAAGATTGAGCCATT+TGG + chr5_3:43015020-43015039 None:intergenic 45.0%
TGCCTGTCCAATGGAAGAAA+AGG + chr5_3:43015285-43015304 None:intergenic 45.0%
TCCAGCAACAAGGATTCTCT+TGG + chr5_3:43015310-43015329 None:intergenic 45.0%
TAGCATGAGTTCCAGCAACA+AGG + chr5_3:43015320-43015339 None:intergenic 45.0%
GATATCGGGTATCAATGTGG+AGG - chr5_3:43015342-43015361 Msa0812700:CDS 45.0%
TCTAGTGGCCAGATCACAAT+TGG - chr5_3:43015387-43015406 Msa0812700:CDS 45.0%
TGGCCAGATCACAATTGGTT+AGG - chr5_3:43015392-43015411 Msa0812700:CDS 45.0%
GATGCTGTTAAGGAAGCTGT+GGG - chr5_3:43015517-43015536 Msa0812700:CDS 45.0%
GGCTTCACCAATAGCAACAA+TGG + chr5_3:43015614-43015633 None:intergenic 45.0%
ATCTGGAAGACCTTTGGTCT+TGG - chr5_3:43015741-43015760 Msa0812700:CDS 45.0%
ATTCCATTTCCTTCACTGCC+GGG + chr5_3:43015814-43015833 None:intergenic 45.0%
GATTCCATTTCCTTCACTGC+CGG + chr5_3:43015815-43015834 None:intergenic 45.0%
! CTTTGGGGATCATGACTTCA+AGG - chr5_3:43015846-43015865 Msa0812700:five_prime_UTR 45.0%
ACAGCTTGATCAGCCTGATA+AGG - chr5_3:43015903-43015922 Msa0812700:five_prime_UTR 45.0%
CAGCTTGATCAGCCTGATAA+GGG - chr5_3:43015904-43015923 Msa0812700:five_prime_UTR 45.0%
TTGATCAGCCTGATAAGGGA+GGG - chr5_3:43015908-43015927 Msa0812700:five_prime_UTR 45.0%
CATGAATTCCCTCCCTTATC+AGG + chr5_3:43015919-43015938 None:intergenic 45.0%
CCCTTATTCCCTCTTGGTTA+TGG - chr5_3:43015946-43015965 Msa0812700:five_prime_UTR 45.0%
CCCATAACCAAGAGGGAATA+AGG + chr5_3:43015950-43015969 None:intergenic 45.0%
AAGCTAGCCCATAACCAAGA+GGG + chr5_3:43015957-43015976 None:intergenic 45.0%
TAAGCTAGCCCATAACCAAG+AGG + chr5_3:43015958-43015977 None:intergenic 45.0%
! GGTTGACGGTTTTCAGAAGC+TGG - chr5_3:43012689-43012708 Msa0812700:intron 50.0%
AGAAGCTGGCGCTTGAATCA+CGG - chr5_3:43012703-43012722 Msa0812700:intron 50.0%
! TTTCCTCACAACGTTGGCCT+CGG - chr5_3:43012795-43012814 Msa0812700:CDS 50.0%
ACACAAACCTAGTTGCTCCG+AGG + chr5_3:43012815-43012834 None:intergenic 50.0%
TGCATGCATAGTCACCTGTG+AGG - chr5_3:43012954-43012973 Msa0812700:intron 50.0%
GCATGCATAGTCACCTGTGA+GGG - chr5_3:43012955-43012974 Msa0812700:intron 50.0%
CATGCATAGTCACCTGTGAG+GGG - chr5_3:43012956-43012975 Msa0812700:intron 50.0%
AAATGCACATGACCCCTCAC+AGG + chr5_3:43012971-43012990 None:intergenic 50.0%
CCCCTTGGATGATATACTGG+AGG + chr5_3:43013359-43013378 None:intergenic 50.0%
! GCCTGTGCCAGACATTTTGT+TGG - chr5_3:43013534-43013553 Msa0812700:intron 50.0%
! GGAGATGGAGGCACAGAAAA+AGG - chr5_3:43013555-43013574 Msa0812700:intron 50.0%
AGACTTGGAGAGGATCCACA+TGG - chr5_3:43013611-43013630 Msa0812700:intron 50.0%
AATCCACATAAGGGGCCATG+TGG + chr5_3:43013629-43013648 None:intergenic 50.0%
GAGTTTGACTCCATTCCAGC+TGG + chr5_3:43013691-43013710 None:intergenic 50.0%
GCATCATCAATCCTGGCGAT+TGG + chr5_3:43014322-43014341 None:intergenic 50.0%
CTCAACGGCATCATCAATCC+TGG + chr5_3:43014329-43014348 None:intergenic 50.0%
!! GGATTGATGATGCCGTTGAG+CGG - chr5_3:43014329-43014348 Msa0812700:intron 50.0%
CTTGTTCCCCAAGTGTCTCA+TGG + chr5_3:43014776-43014795 None:intergenic 50.0%
CATGAGACACTTGGGGAACA+AGG - chr5_3:43014774-43014793 Msa0812700:CDS 50.0%
GCCAAGAGAATCCTTGTTGC+TGG - chr5_3:43015306-43015325 Msa0812700:intron 50.0%
TCGGGTATCAATGTGGAGGA+TGG - chr5_3:43015346-43015365 Msa0812700:CDS 50.0%
GGATGCTGTTAAGGAAGCTG+TGG - chr5_3:43015516-43015535 Msa0812700:CDS 50.0%
TCACCTCCACACTCAGCATA+GGG + chr5_3:43015637-43015656 None:intergenic 50.0%
! CTTTTAGCAGCATGGTTGCC+CGG - chr5_3:43015793-43015812 Msa0812700:exon 50.0%
CTTGATCAGCCTGATAAGGG+AGG - chr5_3:43015907-43015926 Msa0812700:five_prime_UTR 50.0%
GATGACCCCTTATTCCCTCT+TGG - chr5_3:43015940-43015959 Msa0812700:five_prime_UTR 50.0%
CGAGCTTCAACCGTTTCAGC+AGG + chr5_3:43012389-43012408 None:intergenic 55.0%
CTGGCGCTTGAATCACGGTT+AGG - chr5_3:43012708-43012727 Msa0812700:intron 55.0%
TCCAAGGGGCTACCCATTTG+TGG - chr5_3:43013370-43013389 Msa0812700:intron 55.0%
CCTACCTCCCAGCCACAAAT+GGG + chr5_3:43013385-43013404 None:intergenic 55.0%
GATCCACATGGCCCCTTATG+TGG - chr5_3:43013623-43013642 Msa0812700:intron 55.0%
!! CAGGAGAAGTACCAATCGCC+AGG - chr5_3:43014308-43014327 Msa0812700:intron 55.0%
CTCTTGGCATGCCTGTCCAA+TGG + chr5_3:43015294-43015313 None:intergenic 55.0%
ACCTCCACACTCAGCATAGG+GGG + chr5_3:43015635-43015654 None:intergenic 55.0%
CACCTCCACACTCAGCATAG+GGG + chr5_3:43015636-43015655 None:intergenic 55.0%
GTCACCTCCACACTCAGCAT+AGG + chr5_3:43015638-43015657 None:intergenic 55.0%
TTGCCCGGCAGTGAAGGAAA+TGG - chr5_3:43015808-43015827 Msa0812700:five_prime_UTR 55.0%
! ACGTTGGCCTCGGAGCAACT+AGG - chr5_3:43012805-43012824 Msa0812700:CDS 60.0%
GCCACAAATGGGTAGCCCCT+TGG + chr5_3:43013374-43013393 None:intergenic 60.0%
AGGGGCTACCCATTTGTGGC+TGG - chr5_3:43013374-43013393 Msa0812700:intron 60.0%
GGGGCTACCCATTTGTGGCT+GGG - chr5_3:43013375-43013394 Msa0812700:intron 60.0%
GCTACCCATTTGTGGCTGGG+AGG - chr5_3:43013378-43013397 Msa0812700:intron 60.0%
CCCATTTGTGGCTGGGAGGT+AGG - chr5_3:43013382-43013401 Msa0812700:intron 60.0%
GCCTACCTCCCAGCCACAAA+TGG + chr5_3:43013386-43013405 None:intergenic 60.0%
TTTGTGGCTGGGAGGTAGGC+AGG - chr5_3:43013386-43013405 Msa0812700:intron 60.0%
GAAGCCCCCTATGCTGAGTG+TGG - chr5_3:43015628-43015647 Msa0812700:intron 60.0%
GCTCCGAGGCCAACGTTGTG+AGG + chr5_3:43012801-43012820 None:intergenic 65.0%
GCCCCCTATGCTGAGTGTGG+AGG - chr5_3:43015631-43015650 Msa0812700:intron 65.0%
GCATGGTTGCCCGGCAGTGA+AGG - chr5_3:43015802-43015821 Msa0812700:five_prime_UTR 65.0%
TGGCTGGGAGGTAGGCAGGC+AGG - chr5_3:43013390-43013409 Msa0812700:intron 70.0%
TGGGAGGTAGGCAGGCAGGC+AGG - chr5_3:43013394-43013413 Msa0812700:intron 70.0%
AGGTAGGCAGGCAGGCAGGC+AGG - chr5_3:43013398-43013417 Msa0812700:intron 70.0%
TAGGCAGGCAGGCAGGCAGG+AGG - chr5_3:43013401-43013420 Msa0812700:intron 70.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 43012161 43016002 43012161 ID=Msa0812700;Name=Msa0812700
chr5_3 mRNA 43012161 43016002 43012161 ID=Msa0812700-mRNA-1;Parent=Msa0812700;Name=Msa0812700-mRNA-1;_AED=0.08;_eAED=0.08;_QI=204|0.75|0.44|1|1|1|9|0|609
chr5_3 exon 43012161 43012660 43012161 ID=Msa0812700-mRNA-1:exon:13234;Parent=Msa0812700-mRNA-1
chr5_3 exon 43012755 43012956 43012755 ID=Msa0812700-mRNA-1:exon:13233;Parent=Msa0812700-mRNA-1
chr5_3 exon 43013731 43013913 43013731 ID=Msa0812700-mRNA-1:exon:13232;Parent=Msa0812700-mRNA-1
chr5_3 exon 43013994 43014098 43013994 ID=Msa0812700-mRNA-1:exon:13231;Parent=Msa0812700-mRNA-1
chr5_3 exon 43014399 43014642 43014399 ID=Msa0812700-mRNA-1:exon:13230;Parent=Msa0812700-mRNA-1
chr5_3 exon 43014764 43014909 43014764 ID=Msa0812700-mRNA-1:exon:13229;Parent=Msa0812700-mRNA-1
chr5_3 exon 43015029 43015119 43015029 ID=Msa0812700-mRNA-1:exon:13228;Parent=Msa0812700-mRNA-1
chr5_3 exon 43015337 43015544 43015337 ID=Msa0812700-mRNA-1:exon:13227;Parent=Msa0812700-mRNA-1
chr5_3 exon 43015648 43016002 43015648 ID=Msa0812700-mRNA-1:exon:13226;Parent=Msa0812700-mRNA-1
chr5_3 five_prime_UTR 43015799 43016002 43015799 ID=Msa0812700-mRNA-1:five_prime_utr;Parent=Msa0812700-mRNA-1
chr5_3 CDS 43015648 43015798 43015648 ID=Msa0812700-mRNA-1:cds;Parent=Msa0812700-mRNA-1
chr5_3 CDS 43015337 43015544 43015337 ID=Msa0812700-mRNA-1:cds;Parent=Msa0812700-mRNA-1
chr5_3 CDS 43015029 43015119 43015029 ID=Msa0812700-mRNA-1:cds;Parent=Msa0812700-mRNA-1
chr5_3 CDS 43014764 43014909 43014764 ID=Msa0812700-mRNA-1:cds;Parent=Msa0812700-mRNA-1
chr5_3 CDS 43014399 43014642 43014399 ID=Msa0812700-mRNA-1:cds;Parent=Msa0812700-mRNA-1
chr5_3 CDS 43013994 43014098 43013994 ID=Msa0812700-mRNA-1:cds;Parent=Msa0812700-mRNA-1
chr5_3 CDS 43013731 43013913 43013731 ID=Msa0812700-mRNA-1:cds;Parent=Msa0812700-mRNA-1
chr5_3 CDS 43012755 43012956 43012755 ID=Msa0812700-mRNA-1:cds;Parent=Msa0812700-mRNA-1
chr5_3 CDS 43012161 43012660 43012161 ID=Msa0812700-mRNA-1:cds;Parent=Msa0812700-mRNA-1
Gene Sequence

>Msa0812700

ATGGATTCCGTGTATATGAATCCTGCTGAAACGGTTGAAGCTCGCATCAAACACCTTCTTTCTCTTATGACTTTGAAAGAGAAGATTGGTCAGATGACCCAAATTGAACGTTCTGTTACTACTCCTTCTGCCATTAAAGATTTCACCATTGGGAGTGTATACTGTGCTCCACCAAATAGTGCAACTGCTAAGAAGGAAGTGTCATCTGATTGGGCTGATATGGTTGACGGTTTTCAGAAGCTGGCGCTTGAATCACGGTTAGGCATACCAATAATTTATTGTACTGATGCTATTCACGGTAACAATAACGTCTATGGTACTACTATATTTCCTCACAACGTTGGCCTCGGAGCAACTAGAGATGCAGATTTAGTTCAAAGAATTGCAGCTGCAACATCACTTGAACTTAGAGCAAGTGGAACTCACTATACTTTAGCTCCTAGTGTATCTGTCTGCAAAGATCCTAGATGGGGAAGATGCTATGAGAGTTACAGTGAAGACACCGAAATTGTCCGAAACATGACTTCTTATGTTTCAGGTTTGCAAGGCCAACCTCCAGTATATCATCCAAGGGGCTACCCATTTGTGGCTGGGAGGAACAAGGCTATTGCCTGTGCCAGACATTTTGTTGGAGATGGAGGCACAGAAAAAGGTGTAAATGAGGGGAATACTATATTATCATATCAAGACTTGGAGAGGATCCACATGGCCCCTTATGTGGATTGCATAGCACAAGGTGTTTCAACCATTATGGTCTCATATTCCAGCTGGAATGGAGTCAAACTCCATGGTCATCGCTTTCTGATTAATGATATTTTGAAAGAAAAGCTAGGCTTCAAGGGCTTTGTGATTTCTGACTGGGAGGGAATTGATGAATTATGTCAACCTTATGGTTCAGATTATCGTTATTGCATATCTACTTCCATTAATGCTGGAATTGACGTGGTGATGGTTCCTTTAAGATATGAAAAGTTCATGGAAGAGTTGACGTCTTTAGTTCAATCAGGAGAAGTACCAATCGCCAGGATTGATGATGCCGTTGAGCGGATTTTAAGAGTGAAGTTTATTGCTGAACTTTTCGAATTTCCTTTAACTGACAGATCTTTGCTGGATATTGTTGGTTGCAAGATACATAGAGATCTAGCACGTGAAGCAGTTCGAAAGTCATTGGTTCTGTTGAAAAACGGAAAGGATCCTAGTAAACCTTTTCTTCCATTGGACAGGCATGCCAAGAGAATCCTTGTTGCTGGAACTCATGCTAATGATATCGGGTATCAATGTGGAGGATGGACGTTTACTAAGTATGGATCTAGTGGCCAGATCACAATTGGCACAACTATCTTGGATGCTGTTAAGGAAGCTGTGGGACATGAAACTGAAGTTATATATGAGAAGTGCCCAACAACAGAATTCATAGAGCGTAATGAATTTTCTTTTGCCATTGTTGCTATTGGTGAAGCCCCCTATGCTGAGTGTGGAGGTGACAATACAGAACTTGTAATCCCATTTAACGGAGATGAAATTGTAGACATAATTGCTGATAAAATCCCAACACTTGTGATTCTGATATCTGGAAGACCTTTGGTCTTGGAACAAAGTTTGTGGGAAAAGGTAGAAGCTCTTTTAGCAGCATGGTTGCCCGGCAGTGAAGGAAATGGAATCACAGATGTTATCTTTGGGGATCATGACTTCAAGGGTAAACTACCAATGAATTGGTTTAGAAGAGTTGAACAGCTTGATCAGCCTGATAAGGGAGGGAATTCATGTGATGACCCCTTATTCCCTCTTGGTTATGGGCTAGCTTATAATAAGGAGAATTCACACGAATAA

Protein sequence

>Msa0812700

MDSVYMNPAETVEARIKHLLSLMTLKEKIGQMTQIERSVTTPSAIKDFTIGSVYCAPPNSATAKKEVSSDWADMVDGFQKLALESRLGIPIIYCTDAIHGNNNVYGTTIFPHNVGLGATRDADLVQRIAAATSLELRASGTHYTLAPSVSVCKDPRWGRCYESYSEDTEIVRNMTSYVSGLQGQPPVYHPRGYPFVAGRNKAIACARHFVGDGGTEKGVNEGNTILSYQDLERIHMAPYVDCIAQGVSTIMVSYSSWNGVKLHGHRFLINDILKEKLGFKGFVISDWEGIDELCQPYGSDYRYCISTSINAGIDVVMVPLRYEKFMEELTSLVQSGEVPIARIDDAVERILRVKFIAELFEFPLTDRSLLDIVGCKIHRDLAREAVRKSLVLLKNGKDPSKPFLPLDRHAKRILVAGTHANDIGYQCGGWTFTKYGSSGQITIGTTILDAVKEAVGHETEVIYEKCPTTEFIERNEFSFAIVAIGEAPYAECGGDNTELVIPFNGDEIVDIIADKIPTLVILISGRPLVLEQSLWEKVEALLAAWLPGSEGNGITDVIFGDHDFKGKLPMNWFRRVEQLDQPDKGGNSCDDPLFPLGYGLAYNKENSHE*