Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0734020 | XP_003615587.1 | 93.046 | 604 | 42 | 0 | 1 | 604 | 1 | 604 | 0.0 | 1170 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0734020 | sp|A7LXU3|BGH3B_BACO1 | 30.722 | 651 | 374 | 19 | 8 | 602 | 30 | 659 | 4.40e-81 | 274 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0734020 | G7K6A7 | 93.046 | 604 | 42 | 0 | 1 | 604 | 1 | 604 | 0.0 | 1170 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0641030 | Msa0734020 | -0.811192 | 7.915985e-51 | -8.615850e-47 |
| Msa0679560 | Msa0734020 | -0.811862 | 5.661921e-51 | -8.615850e-47 |
| Msa0734020 | Msa0812700 | 0.811821 | 5.779020e-51 | -8.615850e-47 |
| Msa0410960 | Msa0734020 | -0.809752 | 1.619847e-50 | -8.615850e-47 |
| Msa0329650 | Msa0734020 | 0.806775 | 6.981822e-50 | -8.615850e-47 |
| Msa0540160 | Msa0734020 | -0.804951 | 1.688218e-49 | -8.615850e-47 |
| Msa0544930 | Msa0734020 | -0.805343 | 1.397366e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0734020 | MtrunA17_Chr5g0429581 | 93.046 | 604 | 42 | 0 | 1 | 604 | 1 | 604 | 0.0 | 1170 |
| Msa0734020 | MtrunA17_Chr5g0429541 | 89.404 | 604 | 50 | 1 | 1 | 604 | 1 | 590 | 0.0 | 1120 |
| Msa0734020 | MtrunA17_Chr3g0104081 | 74.585 | 602 | 151 | 2 | 1 | 602 | 18 | 617 | 0.0 | 946 |
| Msa0734020 | MtrunA17_Chr6g0461191 | 55.482 | 602 | 255 | 5 | 5 | 601 | 28 | 621 | 0.0 | 692 |
| Msa0734020 | MtrunA17_Chr6g0461211 | 55.740 | 601 | 253 | 5 | 5 | 600 | 28 | 620 | 0.0 | 679 |
| Msa0734020 | MtrunA17_Chr6g0461221 | 54.941 | 597 | 264 | 4 | 5 | 600 | 29 | 621 | 0.0 | 677 |
| Msa0734020 | MtrunA17_Chr3g0118971 | 54.500 | 600 | 268 | 4 | 5 | 603 | 28 | 623 | 0.0 | 677 |
| Msa0734020 | MtrunA17_Chr2g0292341 | 54.606 | 597 | 266 | 4 | 5 | 600 | 30 | 622 | 0.0 | 669 |
| Msa0734020 | MtrunA17_Chr6g0461231 | 54.077 | 601 | 263 | 5 | 5 | 600 | 28 | 620 | 0.0 | 663 |
| Msa0734020 | MtrunA17_Chr7g0253561 | 53.679 | 598 | 272 | 4 | 5 | 601 | 4 | 597 | 0.0 | 660 |
| Msa0734020 | MtrunA17_Chr7g0253551 | 51.242 | 443 | 208 | 2 | 5 | 447 | 29 | 463 | 8.28e-164 | 476 |
| Msa0734020 | MtrunA17_Chr3g0115601 | 26.220 | 656 | 364 | 25 | 5 | 604 | 44 | 635 | 1.06e-38 | 152 |
| Msa0734020 | MtrunA17_Chr5g0425531 | 25.966 | 647 | 358 | 25 | 15 | 603 | 60 | 643 | 1.47e-38 | 152 |
| Msa0734020 | MtrunA17_Chr5g0425431 | 25.811 | 647 | 376 | 23 | 5 | 603 | 48 | 638 | 3.85e-37 | 147 |
| Msa0734020 | MtrunA17_Chr5g0425471 | 27.036 | 577 | 340 | 21 | 86 | 603 | 86 | 640 | 5.34e-37 | 147 |
| Msa0734020 | MtrunA17_Chr5g0425451 | 25.657 | 647 | 377 | 24 | 5 | 603 | 50 | 640 | 8.60e-36 | 143 |
| Msa0734020 | MtrunA17_Chr7g0269871 | 25.919 | 571 | 329 | 25 | 93 | 602 | 86 | 623 | 1.26e-34 | 140 |
| Msa0734020 | MtrunA17_Chr4g0050591 | 25.865 | 607 | 345 | 23 | 5 | 573 | 54 | 593 | 1.07e-32 | 134 |
| Msa0734020 | MtrunA17_Chr1g0194841 | 23.976 | 659 | 364 | 26 | 5 | 602 | 37 | 619 | 4.69e-32 | 132 |
| Msa0734020 | MtrunA17_Chr1g0207281 | 24.957 | 585 | 353 | 23 | 85 | 608 | 89 | 648 | 9.90e-30 | 125 |
| Msa0734020 | MtrunA17_Chr2g0278761 | 26.422 | 545 | 343 | 21 | 85 | 592 | 90 | 613 | 6.50e-29 | 122 |
| Msa0734020 | MtrunA17_Chr2g0294751 | 25.565 | 575 | 345 | 24 | 86 | 604 | 77 | 624 | 8.67e-29 | 122 |
| Msa0734020 | MtrunA17_Chr5g0411571 | 24.721 | 627 | 336 | 25 | 5 | 573 | 42 | 590 | 2.47e-28 | 120 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0734020 | AT3G47000.1 | 69.231 | 598 | 180 | 4 | 4 | 600 | 9 | 603 | 0.0 | 870 |
| Msa0734020 | AT3G47040.4 | 66.889 | 601 | 195 | 3 | 4 | 603 | 9 | 606 | 0.0 | 851 |
| Msa0734020 | AT3G47010.1 | 66.389 | 601 | 198 | 3 | 4 | 603 | 10 | 607 | 0.0 | 849 |
| Msa0734020 | AT3G47010.2 | 66.223 | 601 | 198 | 4 | 4 | 603 | 10 | 606 | 0.0 | 843 |
| Msa0734020 | AT3G47040.1 | 64.217 | 626 | 195 | 4 | 4 | 603 | 9 | 631 | 0.0 | 837 |
| Msa0734020 | AT3G47050.1 | 66.889 | 601 | 187 | 5 | 4 | 600 | 9 | 601 | 0.0 | 826 |
| Msa0734020 | AT3G47040.2 | 61.987 | 634 | 204 | 6 | 4 | 603 | 9 | 639 | 0.0 | 800 |
| Msa0734020 | AT5G04885.2 | 54.682 | 598 | 265 | 5 | 4 | 600 | 46 | 638 | 0.0 | 672 |
| Msa0734020 | AT5G04885.3 | 54.682 | 598 | 265 | 5 | 4 | 600 | 29 | 621 | 0.0 | 671 |
| Msa0734020 | AT5G04885.1 | 54.682 | 598 | 265 | 5 | 4 | 600 | 29 | 621 | 0.0 | 671 |
| Msa0734020 | AT3G47000.3 | 70.362 | 442 | 130 | 1 | 4 | 445 | 9 | 449 | 0.0 | 669 |
| Msa0734020 | AT3G47010.4 | 67.873 | 442 | 141 | 1 | 4 | 445 | 10 | 450 | 0.0 | 647 |
| Msa0734020 | AT3G47040.3 | 67.647 | 442 | 142 | 1 | 4 | 445 | 9 | 449 | 0.0 | 644 |
| Msa0734020 | AT5G20950.3 | 53.099 | 597 | 274 | 5 | 5 | 600 | 104 | 695 | 0.0 | 637 |
| Msa0734020 | AT5G20950.2 | 53.099 | 597 | 274 | 5 | 5 | 600 | 26 | 617 | 0.0 | 636 |
| Msa0734020 | AT5G20950.1 | 53.099 | 597 | 274 | 5 | 5 | 600 | 26 | 617 | 0.0 | 636 |
| Msa0734020 | AT3G47000.2 | 69.393 | 428 | 128 | 3 | 174 | 600 | 1 | 426 | 0.0 | 632 |
| Msa0734020 | AT5G20940.1 | 52.246 | 601 | 277 | 6 | 2 | 600 | 29 | 621 | 0.0 | 616 |
| Msa0734020 | AT3G47010.3 | 65.429 | 431 | 145 | 3 | 174 | 603 | 1 | 428 | 0.0 | 611 |
| Msa0734020 | AT3G47050.2 | 67.109 | 377 | 117 | 2 | 4 | 377 | 9 | 381 | 0.0 | 538 |
| Msa0734020 | AT3G62710.1 | 46.423 | 629 | 286 | 13 | 5 | 600 | 38 | 648 | 0.0 | 532 |
| Msa0734020 | AT1G02640.1 | 25.348 | 647 | 366 | 25 | 9 | 604 | 48 | 628 | 1.31e-35 | 143 |
| Msa0734020 | AT3G19620.1 | 24.769 | 650 | 377 | 28 | 5 | 603 | 41 | 629 | 8.66e-33 | 134 |
| Msa0734020 | AT5G49360.1 | 24.567 | 635 | 375 | 26 | 11 | 602 | 55 | 628 | 4.70e-31 | 129 |
| Msa0734020 | AT5G64570.1 | 24.924 | 654 | 369 | 25 | 5 | 604 | 59 | 644 | 1.63e-30 | 127 |
| Msa0734020 | AT5G09730.1 | 25.041 | 611 | 344 | 19 | 5 | 573 | 49 | 587 | 3.80e-30 | 126 |
| Msa0734020 | AT5G10560.1 | 24.625 | 666 | 376 | 27 | 5 | 604 | 42 | 647 | 1.27e-27 | 119 |
| Msa0734020 | AT1G78060.1 | 24.370 | 595 | 363 | 21 | 11 | 573 | 44 | 583 | 2.33e-27 | 118 |
| Msa0734020 | AT5G64570.3 | 24.351 | 616 | 360 | 22 | 5 | 582 | 59 | 606 | 2.07e-26 | 114 |
| Msa0734020 | AT5G64570.2 | 25.806 | 496 | 309 | 20 | 146 | 604 | 13 | 486 | 1.26e-24 | 108 |
Find 162 sgRNAs with CRISPR-Local
Find 322 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCTTATTCCCTCTTGGTTA+TGG | 0.150094 | 5_1:+47623579 | Msa0734020:CDS |
| AACATGACTTCTTATGTTTC+AGG | 0.155153 | 5_1:+47620061 | Msa0734020:CDS |
| ACAATTTCATCTCCATTAAA+TGG | 0.159717 | 5_1:-47623309 | None:intergenic |
| TTCTTAGCAGTTGCACTATT+TGG | 0.179068 | 5_1:-47619383 | None:intergenic |
| AAACTTGTAATCCCATTTAA+TGG | 0.207099 | 5_1:+47623297 | Msa0734020:CDS |
| CCTTATTCCCTCTTGGTTAT+GGG | 0.218882 | 5_1:+47623580 | Msa0734020:CDS |
| CCCATAACCAAGAGGGAATA+AGG | 0.250774 | 5_1:-47623580 | None:intergenic |
| GGAATCACAGATGTTATCTT+TGG | 0.262824 | 5_1:+47623462 | Msa0734020:CDS |
| AGCAAAGATCTGTCAGTTAA+AGG | 0.273779 | 5_1:-47621131 | None:intergenic |
| CATGAATTCCCTCCCTTATC+AGG | 0.289482 | 5_1:-47623549 | None:intergenic |
| GGAACTAAGTTCATAAATTA+AGG | 0.291783 | 5_1:+47618991 | Msa0734020:five_prime_UTR |
| TAGTAACAGAACGTTCAATT+TGG | 0.293059 | 5_1:-47619203 | None:intergenic |
| GATGAATTATGTCAACCTTA+TGG | 0.304645 | 5_1:+47620834 | Msa0734020:CDS |
| ACCAATGGTGAAATCTTTAA+TGG | 0.307869 | 5_1:-47619235 | None:intergenic |
| GCATCAGTACAATAAATTAT+TGG | 0.314084 | 5_1:-47619479 | None:intergenic |
| TTGATGTCTTTAGTTCAATC+AGG | 0.328926 | 5_1:+47621029 | Msa0734020:CDS |
| ACACTTGTGATTCTGATATC+TGG | 0.335621 | 5_1:+47623357 | Msa0734020:CDS |
| AAACATAAGAAGTCATGTTT+TGG | 0.337520 | 5_1:-47620057 | None:intergenic |
| TTTAACTGACAGATCTTTGC+TGG | 0.339407 | 5_1:+47621133 | Msa0734020:CDS |
| GGAGATGGAGGCACAGAAAA+AGG | 0.340117 | 5_1:+47620292 | Msa0734020:CDS |
| ACAAGGTGTTTCAACCATTA+TGG | 0.343028 | 5_1:+47620393 | Msa0734020:CDS |
| GGATGGACATTTACTAAGTA+TGG | 0.343875 | 5_1:+47622982 | Msa0734020:CDS |
| CATGTCAATTCCAGCATTAA+TGG | 0.351444 | 5_1:-47620886 | None:intergenic |
| GAATCACAGATGTTATCTTT+GGG | 0.351585 | 5_1:+47623463 | Msa0734020:CDS |
| AACTATCTTGGATGCTGTTA+AGG | 0.355539 | 5_1:+47623140 | Msa0734020:CDS |
| CACGGTAACAATAACGTCTA+TGG | 0.361228 | 5_1:+47619506 | Msa0734020:CDS |
| GTCATCTGATTGGGCTGATA+TGG | 0.362204 | 5_1:+47619412 | Msa0734020:CDS |
| AGGGTAAACTACCAATGAAT+TGG | 0.364228 | 5_1:+47623499 | Msa0734020:CDS |
| AATTTCAGGCACAACTATCT+TGG | 0.364724 | 5_1:+47623128 | Msa0734020:intron |
| TTATGGGCTAGCTTATAATA+AGG | 0.364827 | 5_1:+47623596 | Msa0734020:CDS |
| CGCTCTATGAATTCTGTTGT+TGG | 0.367124 | 5_1:-47623204 | None:intergenic |
| GCCTACCTCCCAGCCACAAA+TGG | 0.372066 | 5_1:-47620124 | None:intergenic |
| TAATTTATGAACTTAGTTCC+AGG | 0.377745 | 5_1:-47618988 | None:intergenic |
| AGGGGCTACCCATTTGTGGC+TGG | 0.380723 | 5_1:+47620115 | Msa0734020:CDS |
| GCATCATCAATCCTGGATAT+TGG | 0.386731 | 5_1:-47621059 | None:intergenic |
| AGGTCTGCAAAGATCCTAGA+TGG | 0.390671 | 5_1:+47619993 | Msa0734020:intron |
| GCCAAGAGAATCCTTGTTGC+TGG | 0.393682 | 5_1:+47622925 | Msa0734020:CDS |
| CTTTGGGGATCATGACTTCA+AGG | 0.401948 | 5_1:+47623479 | Msa0734020:CDS |
| CCATAACCAAGAGGGAATAA+GGG | 0.403111 | 5_1:-47623579 | None:intergenic |
| CAATTTCATCTCCATTAAAT+GGG | 0.409017 | 5_1:-47623308 | None:intergenic |
| ATCTGGAAGACCTTTGGTCT+TGG | 0.409437 | 5_1:+47623374 | Msa0734020:CDS |
| GGGGCTACCCATTTGTGGCT+GGG | 0.413579 | 5_1:+47620116 | Msa0734020:CDS |
| GGAACTCATGCTAATGATAT+CGG | 0.414525 | 5_1:+47622946 | Msa0734020:CDS |
| TTAGCAGTTGCACTATTTGG+TGG | 0.417251 | 5_1:-47619380 | None:intergenic |
| GGAACAAAGTTTGTTGGAAA+AGG | 0.418971 | 5_1:+47623395 | Msa0734020:CDS |
| ACTCTTCTAAACCAATTCAT+TGG | 0.419131 | 5_1:-47623510 | None:intergenic |
| GGTCTTGGAACAAAGTTTGT+TGG | 0.420128 | 5_1:+47623389 | Msa0734020:CDS |
| TCTGATATCTGGAAGACCTT+TGG | 0.421164 | 5_1:+47623368 | Msa0734020:CDS |
| GTGCTATGCAATCCACATAA+GGG | 0.425088 | 5_1:-47620372 | None:intergenic |
| GAAAGAAAAGCTAGGCTTCA+AGG | 0.425811 | 5_1:+47620480 | Msa0734020:CDS |
| GCCATTAAAGATTTCACCAT+TGG | 0.428169 | 5_1:+47619234 | Msa0734020:CDS |
| AGAAGGAAGTGTCATCTGAT+TGG | 0.432915 | 5_1:+47619402 | Msa0734020:CDS |
| AGGGCTTTGTGATTTCTGAC+TGG | 0.436021 | 5_1:+47620802 | Msa0734020:intron |
| GCTCTATGAATTCTGTTGTT+GGG | 0.437427 | 5_1:-47623203 | None:intergenic |
| AGTAACAGAACGTTCAATTT+GGG | 0.442472 | 5_1:-47619202 | None:intergenic |
| ATATCAGAATCACAAGTGTT+AGG | 0.443036 | 5_1:-47623353 | None:intergenic |
| GATGACCCCTTATTCCCTCT+TGG | 0.445616 | 5_1:+47623573 | Msa0734020:CDS |
| ATGACTTTGAAAGAGAAGAT+TGG | 0.449827 | 5_1:+47619171 | Msa0734020:CDS |
| TCATAGCATCTTCCCCATCT+AGG | 0.450563 | 5_1:-47620007 | None:intergenic |
| TATTGTACTGATGCTATTCA+CGG | 0.453578 | 5_1:+47619488 | Msa0734020:CDS |
| TGAAGCAGTTCGAAAGTCAT+TGG | 0.454495 | 5_1:+47622846 | Msa0734020:CDS |
| GATTCCATTTCCTTCACTGC+CGG | 0.456035 | 5_1:-47623445 | None:intergenic |
| TTTCCTCACAACGTTGGCCT+CGG | 0.456574 | 5_1:+47619539 | Msa0734020:CDS |
| AGATCTTTGCTGGATATTGT+TGG | 0.459020 | 5_1:+47621143 | Msa0734020:CDS |
| TCCATCTCCAACAAAATGTC+TGG | 0.459864 | 5_1:-47620278 | None:intergenic |
| GAAGGAAGTGTCATCTGATT+GGG | 0.460679 | 5_1:+47619403 | Msa0734020:CDS |
| ACAGCTTGATCAGCCTGATA+AGG | 0.465072 | 5_1:+47623536 | Msa0734020:CDS |
| AAATAGTGCAACTGCTAAGA+AGG | 0.470452 | 5_1:+47619385 | Msa0734020:CDS |
| CAGCTTGATCAGCCTGATAA+GGG | 0.470886 | 5_1:+47623537 | Msa0734020:CDS |
| TCAAAGTCATAAGAGAAAGA+AGG | 0.472645 | 5_1:-47619158 | None:intergenic |
| GTTGATGTCCAATGGTGAAA+AGG | 0.473075 | 5_1:-47619019 | None:intergenic |
| CTCAACGGCATCATCAATCC+TGG | 0.473659 | 5_1:-47621066 | None:intergenic |
| CTTGTAGCAGCATGGTTGCC+CGG | 0.474050 | 5_1:+47623426 | Msa0734020:CDS |
| AAACCTAACCAATTGTGATC+TGG | 0.474654 | 5_1:-47623014 | None:intergenic |
| TGTGCTATGCAATCCACATA+AGG | 0.474975 | 5_1:-47620373 | None:intergenic |
| GATCCACATGGCCCCTTATG+TGG | 0.475386 | 5_1:+47620360 | Msa0734020:CDS |
| GGGCTTTGTGATTTCTGACT+GGG | 0.478563 | 5_1:+47620803 | Msa0734020:intron |
| TGCCTGTCCAATGGAAGAAA+AGG | 0.485220 | 5_1:-47622901 | None:intergenic |
| TCCAAGGGGCTACCCATTTG+TGG | 0.486656 | 5_1:+47620111 | Msa0734020:CDS |
| TCTAGTGGCCAGATCACAAT+TGG | 0.486949 | 5_1:+47623006 | Msa0734020:CDS |
| GTCTCATATTCCAGCTGGAA+TGG | 0.487762 | 5_1:+47620415 | Msa0734020:CDS |
| TCACCTCCACACTCAGCATA+GGG | 0.490280 | 5_1:-47623267 | None:intergenic |
| GCCACAAATGGGTAGCCCCT+TGG | 0.496947 | 5_1:-47620112 | None:intergenic |
| ATTCCATTTCCTTCACTGCC+GGG | 0.497220 | 5_1:-47623444 | None:intergenic |
| TCCAGCAACAAGGATTCTCT+TGG | 0.497425 | 5_1:-47622926 | None:intergenic |
| GGTGGACGGGTTTCAGAAGC+TGG | 0.498559 | 5_1:+47619433 | Msa0734020:CDS |
| CAGGGGAAGTACCAATATCC+AGG | 0.507801 | 5_1:+47621048 | Msa0734020:CDS |
| TTATGGTCTCATATTCCAGC+TGG | 0.513411 | 5_1:+47620410 | Msa0734020:CDS |
| ATATCTACTTCCATTAATGC+TGG | 0.513950 | 5_1:+47620876 | Msa0734020:CDS |
| TAACGATAATCTGAACCATA+AGG | 0.514827 | 5_1:-47620849 | None:intergenic |
| GCATGGTTGCCCGGCAGTGA+AGG | 0.515743 | 5_1:+47623435 | Msa0734020:CDS |
| TTGCCCGGCAGTGAAGGAAA+TGG | 0.516306 | 5_1:+47623441 | Msa0734020:CDS |
| CTGGCGCTTGAATCACGGTT+AGG | 0.517230 | 5_1:+47619452 | Msa0734020:CDS |
| CCTACCTCCCAGCCACAAAT+GGG | 0.519639 | 5_1:-47620123 | None:intergenic |
| GAGTTTGACTCCATTCCAGC+TGG | 0.521515 | 5_1:-47620425 | None:intergenic |
| TTTGTGATTTCTGACTGGGA+GGG | 0.522660 | 5_1:+47620807 | Msa0734020:CDS |
| TCACTTGAACTTAGAGCAAG+TGG | 0.523247 | 5_1:+47619822 | Msa0734020:CDS |
| AATGGAAGAAAAGGTTTACT+AGG | 0.526264 | 5_1:-47622892 | None:intergenic |
| GCTGGATATTGTTGGTTGCA+AGG | 0.536491 | 5_1:+47621151 | Msa0734020:CDS |
| AATTTATGAACTTAGTTCCA+GGG | 0.540408 | 5_1:-47618987 | None:intergenic |
| TGATGTCTTTAGTTCAATCA+GGG | 0.541605 | 5_1:+47621030 | Msa0734020:CDS |
| GCTGGAATATGAGACCATAA+TGG | 0.546993 | 5_1:-47620407 | None:intergenic |
| ATTGGGCTGATATGGTGGAC+GGG | 0.547205 | 5_1:+47619420 | Msa0734020:CDS |
| CTCTTGGCATGCCTGTCCAA+TGG | 0.548749 | 5_1:-47622910 | None:intergenic |
| AACCTCCAGAAAATCATCCA+AGG | 0.549496 | 5_1:+47620095 | Msa0734020:CDS |
| TCTTATGTTTCAGGTTTGCA+AGG | 0.552090 | 5_1:+47620070 | Msa0734020:CDS |
| GTGAAATCTTTAATGGCAGA+AGG | 0.554246 | 5_1:-47619228 | None:intergenic |
| TCGGATATCAATGTGGAGGA+TGG | 0.557414 | 5_1:+47622965 | Msa0734020:CDS |
| CATTAATGCTGGAATTGACA+TGG | 0.559007 | 5_1:+47620887 | Msa0734020:CDS |
| TATAATATAAGTGCGTGCCC+TGG | 0.559895 | 5_1:+47618970 | Msa0734020:five_prime_UTR |
| GATTGGGCTGATATGGTGGA+CGG | 0.559902 | 5_1:+47619419 | Msa0734020:CDS |
| GCGAGCTTCAACTGGTTCAG+AGG | 0.570591 | 5_1:-47619127 | None:intergenic |
| CAAGAACTAAGTCAATTACA+TGG | 0.570945 | 5_1:+47619086 | Msa0734020:exon |
| CTTTGTGATTTCTGACTGGG+AGG | 0.572095 | 5_1:+47620806 | Msa0734020:CDS |
| TCCAACAAAATGTCTGGCAC+AGG | 0.572984 | 5_1:-47620272 | None:intergenic |
| CGAGCTTCAACTGGTTCAGA+GGG | 0.575194 | 5_1:-47619126 | None:intergenic |
| GGCTTCACCAATAGCAACAA+TGG | 0.575663 | 5_1:-47623244 | None:intergenic |
| GGATGCTGTTAAGGAAGCTG+TGG | 0.579903 | 5_1:+47623149 | Msa0734020:CDS |
| AGAAGCTGGCGCTTGAATCA+CGG | 0.580598 | 5_1:+47619447 | Msa0734020:CDS |
| CACTCTTAAAATCCGCTCAA+CGG | 0.581745 | 5_1:-47621081 | None:intergenic |
| GCTACCCATTTGTGGCTGGG+AGG | 0.583997 | 5_1:+47620119 | Msa0734020:CDS |
| ATCTGATTGGGCTGATATGG+TGG | 0.585355 | 5_1:+47619415 | Msa0734020:CDS |
| GGTCTGCAAAGATCCTAGAT+GGG | 0.587399 | 5_1:+47619994 | Msa0734020:intron |
| ACCTCCAGAAAATCATCCAA+GGG | 0.588939 | 5_1:+47620096 | Msa0734020:CDS |
| GTCACCTCCACACTCAGCAT+AGG | 0.590732 | 5_1:-47623268 | None:intergenic |
| GCTCCGAGGCCAACGTTGTG+AGG | 0.591912 | 5_1:-47619542 | None:intergenic |
| ACTATATTTCCTCACAACGT+TGG | 0.594556 | 5_1:+47619533 | Msa0734020:CDS |
| TTTACTAAGTATGGATCTAG+TGG | 0.597699 | 5_1:+47622991 | Msa0734020:CDS |
| ACCTCCACACTCAGCATAGG+GGG | 0.603901 | 5_1:-47623265 | None:intergenic |
| AAACTTTGTTCCAAGACCAA+AGG | 0.605055 | 5_1:-47623384 | None:intergenic |
| TGCTATGCAATCCACATAAG+GGG | 0.605461 | 5_1:-47620371 | None:intergenic |
| TAGCATGAGTTCCAGCAACA+AGG | 0.605520 | 5_1:-47622936 | None:intergenic |
| ACTAAGTTCATAAATTAAGG+TGG | 0.606328 | 5_1:+47618994 | Msa0734020:five_prime_UTR |
| TATATTATCATATCAAGACT+TGG | 0.606963 | 5_1:+47620333 | Msa0734020:CDS |
| TTTGGGGATCATGACTTCAA+GGG | 0.607727 | 5_1:+47623480 | Msa0734020:CDS |
| TGGAATGGAGTCAAACTCCA+TGG | 0.613942 | 5_1:+47620430 | Msa0734020:CDS |
| TAATTAGTACTTCAGGAACA+AGG | 0.614183 | 5_1:+47620243 | Msa0734020:intron |
| AATCACAGATGTTATCTTTG+GGG | 0.616261 | 5_1:+47623464 | Msa0734020:CDS |
| CATAACCAAGAGGGAATAAG+GGG | 0.624050 | 5_1:-47623578 | None:intergenic |
| TTGATCAGCCTGATAAGGGA+GGG | 0.629383 | 5_1:+47623541 | Msa0734020:CDS |
| TAGAAGCTCTTGTAGCAGCA+TGG | 0.634660 | 5_1:+47623418 | Msa0734020:CDS |
| CTTGATCAGCCTGATAAGGG+AGG | 0.634857 | 5_1:+47623540 | Msa0734020:CDS |
| TATCATATCAAGACTTGGAG+AGG | 0.635186 | 5_1:+47620338 | Msa0734020:CDS |
| ACGTTGGCCTCGGAGCAACT+AGG | 0.636583 | 5_1:+47619549 | Msa0734020:CDS |
| AAGCTAGCCCATAACCAAGA+GGG | 0.637396 | 5_1:-47623587 | None:intergenic |
| GGATTGATGATGCCGTTGAG+CGG | 0.645720 | 5_1:+47621069 | Msa0734020:CDS |
| AGATGCCTTACAGATACACT+AGG | 0.649143 | 5_1:-47619864 | None:intergenic |
| CACCTCCACACTCAGCATAG+GGG | 0.652884 | 5_1:-47623266 | None:intergenic |
| GTCTGCAAAGATCCTAGATG+GGG | 0.658282 | 5_1:+47619995 | Msa0734020:CDS |
| GATGTCTTTAGTTCAATCAG+GGG | 0.660284 | 5_1:+47621031 | Msa0734020:CDS |
| GCTGCAGAGTTGATGTCCAA+TGG | 0.669032 | 5_1:-47619027 | None:intergenic |
| TAATCAGAAAGCGATGACCA+TGG | 0.669304 | 5_1:-47620447 | None:intergenic |
| TTCAGAGGGATTCATATACA+CGG | 0.676769 | 5_1:-47619112 | None:intergenic |
| GATATCGGATATCAATGTGG+AGG | 0.679895 | 5_1:+47622961 | Msa0734020:CDS |
| GATGCTGTTAAGGAAGCTGT+GGG | 0.680700 | 5_1:+47623150 | Msa0734020:CDS |
| AATGATATCGGATATCAATG+TGG | 0.685743 | 5_1:+47622958 | Msa0734020:CDS |
| TAAGCTAGCCCATAACCAAG+AGG | 0.693183 | 5_1:-47623588 | None:intergenic |
| TATGTGGATTGCATAGCACA+AGG | 0.701412 | 5_1:+47620376 | Msa0734020:CDS |
| CCTCCAGAAAATCATCCAAG+GGG | 0.706643 | 5_1:+47620097 | Msa0734020:CDS |
| AATCCACATAAGGGGCCATG+TGG | 0.706935 | 5_1:-47620363 | None:intergenic |
| AGACTTGGAGAGGATCCACA+TGG | 0.730403 | 5_1:+47620348 | Msa0734020:CDS |
| ACACAAACCTAGTTGCTCCG+AGG | 0.747671 | 5_1:-47619556 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAAAAAATAAGAAACTTT+CGG | - | chr5_1:47618947-47618966 | None:intergenic | 10.0% |
| !!! | AAGTATTGATTTTTTTAAAA+TGG | - | chr5_1:47620180-47620199 | None:intergenic | 10.0% |
| !! | AATCTATGTTAAAATATTAT+GGG | - | chr5_1:47620928-47620947 | None:intergenic | 10.0% |
| !!! | ATTAATTTTTCATATCTTAA+AGG | - | chr5_1:47621002-47621021 | None:intergenic | 10.0% |
| !!! | TTTAAGATATGAAAAATTAA+TGG | + | chr5_1:47621001-47621020 | Msa0734020:CDS | 10.0% |
| !! | ATTAATTAATTTAACAAGTT+TGG | + | chr5_1:47622478-47622497 | Msa0734020:intron | 10.0% |
| !! | TTAATTAATTTAACAAGTTT+GGG | + | chr5_1:47622479-47622498 | Msa0734020:intron | 10.0% |
| !! | TCAATAAAAAATTCAAAAGT+TGG | - | chr5_1:47619893-47619912 | None:intergenic | 15.0% |
| !! | ATCTATGTTAAAATATTATG+GGG | - | chr5_1:47620927-47620946 | None:intergenic | 15.0% |
| !! | CAATCTATGTTAAAATATTA+TGG | - | chr5_1:47620929-47620948 | None:intergenic | 15.0% |
| !!! | ATTGATAGTATTTATATAGA+AGG | - | chr5_1:47622668-47622687 | None:intergenic | 15.0% |
| !!! | AAGCTTTGATTTTTCATTAT+TGG | + | chr5_1:47619747-47619766 | Msa0734020:intron | 20.0% |
| !! | TATATTATCATATCAAGACT+TGG | + | chr5_1:47620333-47620352 | Msa0734020:CDS | 20.0% |
| !!! | ATTGATAGTGTTTATATAGA+AGG | - | chr5_1:47621923-47621942 | None:intergenic | 20.0% |
| !! | AAAACGACTTATTAAAACTT+GGG | + | chr5_1:47622427-47622446 | Msa0734020:intron | 20.0% |
| ! | AATTTATGAACTTAGTTCCA+GGG | - | chr5_1:47618990-47619009 | None:intergenic | 25.0% |
| ! | TAATTTATGAACTTAGTTCC+AGG | - | chr5_1:47618991-47619010 | None:intergenic | 25.0% |
| ! | GGAACTAAGTTCATAAATTA+AGG | + | chr5_1:47618991-47619010 | Msa0734020:five_prime_UTR | 25.0% |
| ! | ACTAAGTTCATAAATTAAGG+TGG | + | chr5_1:47618994-47619013 | Msa0734020:five_prime_UTR | 25.0% |
| !! | ATAGTATAATAGAGTACCAA+TGG | - | chr5_1:47619253-47619272 | None:intergenic | 25.0% |
| ! | CTTATACTACTTTCATTTCT+TGG | + | chr5_1:47619294-47619313 | Msa0734020:intron | 25.0% |
| ! | GCATCAGTACAATAAATTAT+TGG | - | chr5_1:47619482-47619501 | None:intergenic | 25.0% |
| ! | ATTGGAAAGATGCAAATTAA+AGG | - | chr5_1:47619611-47619630 | None:intergenic | 25.0% |
| !! | AAACATAAGAAGTCATGTTT+TGG | - | chr5_1:47620060-47620079 | None:intergenic | 25.0% |
| ! | ATTCTTCTAATTAGTACTTC+AGG | + | chr5_1:47620236-47620255 | Msa0734020:intron | 25.0% |
| !!! | GATATTTTGAAAGAAAAGCT+AGG | + | chr5_1:47620472-47620491 | Msa0734020:CDS | 25.0% |
| !!! | GATTTTTTTTTCTCTCTTTC+TGG | + | chr5_1:47620505-47620524 | Msa0734020:intron | 25.0% |
| ! | AAATCTAATAGAACTAGATC+AGG | + | chr5_1:47620636-47620655 | Msa0734020:intron | 25.0% |
| ! | ATATATTCGTTAACATATGC+AGG | + | chr5_1:47620968-47620987 | Msa0734020:intron | 25.0% |
| !!! | CATCAAATTGTGTTGTTTTT+TGG | + | chr5_1:47621363-47621382 | Msa0734020:intron | 25.0% |
| ! | GTCGTAATAACTATATTTGA+GGG | - | chr5_1:47622194-47622213 | None:intergenic | 25.0% |
| !! | ATACCTCAGAAACTTTTATT+TGG | + | chr5_1:47622324-47622343 | Msa0734020:intron | 25.0% |
| ! | GAAAACGACTTATTAAAACT+TGG | + | chr5_1:47622426-47622445 | Msa0734020:intron | 25.0% |
| ! | AAACGACTTATTAAAACTTG+GGG | + | chr5_1:47622428-47622447 | Msa0734020:intron | 25.0% |
| !!! | TTTTAAGGGTTTTTTGTGAA+CGG | - | chr5_1:47622566-47622585 | None:intergenic | 25.0% |
| !!! | TTACTGATTTTGAGATGAAT+GGG | - | chr5_1:47622615-47622634 | None:intergenic | 25.0% |
| ! | AGTATTTATATAGAAGGAGA+GGG | - | chr5_1:47622662-47622681 | None:intergenic | 25.0% |
| ! | TAGTATTTATATAGAAGGAG+AGG | - | chr5_1:47622663-47622682 | None:intergenic | 25.0% |
| ! | AAACTTGTAATCCCATTTAA+TGG | + | chr5_1:47623297-47623316 | Msa0734020:CDS | 25.0% |
| ! | CAATTTCATCTCCATTAAAT+GGG | - | chr5_1:47623311-47623330 | None:intergenic | 25.0% |
| ! | ACAATTTCATCTCCATTAAA+TGG | - | chr5_1:47623312-47623331 | None:intergenic | 25.0% |
| CAAGAACTAAGTCAATTACA+TGG | + | chr5_1:47619086-47619105 | Msa0734020:exon | 30.0% | |
| TCAAAGTCATAAGAGAAAGA+AGG | - | chr5_1:47619161-47619180 | None:intergenic | 30.0% | |
| ! | ATGACTTTGAAAGAGAAGAT+TGG | + | chr5_1:47619171-47619190 | Msa0734020:CDS | 30.0% |
| AGTAACAGAACGTTCAATTT+GGG | - | chr5_1:47619205-47619224 | None:intergenic | 30.0% | |
| TAGTAACAGAACGTTCAATT+TGG | - | chr5_1:47619206-47619225 | None:intergenic | 30.0% | |
| ACCAATGGTGAAATCTTTAA+TGG | - | chr5_1:47619238-47619257 | None:intergenic | 30.0% | |
| ACTACTTTCATTTCTTGGTA+CGG | + | chr5_1:47619299-47619318 | Msa0734020:intron | 30.0% | |
| ! | TCCTTGTATTTTGCAACTAA+GGG | + | chr5_1:47619342-47619361 | Msa0734020:intron | 30.0% |
| ! | TATTGTACTGATGCTATTCA+CGG | + | chr5_1:47619488-47619507 | Msa0734020:CDS | 30.0% |
| !!! | CATCTTTCCAATTTTAGCTA+TGG | + | chr5_1:47619619-47619638 | Msa0734020:intron | 30.0% |
| !! | GCATGTTTGTATTGACTTAT+AGG | + | chr5_1:47619648-47619667 | Msa0734020:intron | 30.0% |
| ACTTGCATATGTGAATGAAT+AGG | + | chr5_1:47619973-47619992 | Msa0734020:intron | 30.0% | |
| !! | AGTCATGTTTTGGACAATTT+CGG | - | chr5_1:47620050-47620069 | None:intergenic | 30.0% |
| AACATGACTTCTTATGTTTC+AGG | + | chr5_1:47620061-47620080 | Msa0734020:CDS | 30.0% | |
| TAATTAGTACTTCAGGAACA+AGG | + | chr5_1:47620243-47620262 | Msa0734020:intron | 30.0% | |
| ! | ACAGAAAAAGGTGTAAATGA+GGG | + | chr5_1:47620304-47620323 | Msa0734020:CDS | 30.0% |
| !! | TTTTTCTCTCTTTCTGGAAA+TGG | + | chr5_1:47620511-47620530 | Msa0734020:intron | 30.0% |
| ! | TTTTAACAGCTTCATCATAC+TGG | - | chr5_1:47620619-47620638 | None:intergenic | 30.0% |
| ! | TAAGATCAATTTTCCACTGT+AGG | + | chr5_1:47620782-47620801 | Msa0734020:intron | 30.0% |
| ! | AAGATCAATTTTCCACTGTA+GGG | + | chr5_1:47620783-47620802 | Msa0734020:intron | 30.0% |
| GATGAATTATGTCAACCTTA+TGG | + | chr5_1:47620834-47620853 | Msa0734020:CDS | 30.0% | |
| TAACGATAATCTGAACCATA+AGG | - | chr5_1:47620852-47620871 | None:intergenic | 30.0% | |
| ATATCTACTTCCATTAATGC+TGG | + | chr5_1:47620876-47620895 | Msa0734020:CDS | 30.0% | |
| ! | TTGATGTCTTTAGTTCAATC+AGG | + | chr5_1:47621029-47621048 | Msa0734020:CDS | 30.0% |
| ! | TGATGTCTTTAGTTCAATCA+GGG | + | chr5_1:47621030-47621049 | Msa0734020:CDS | 30.0% |
| AATGTTGTGAAACGTCTTAA+CGG | - | chr5_1:47621457-47621476 | None:intergenic | 30.0% | |
| ! | AAACCGTTTTATCTTGAACA+CGG | - | chr5_1:47621514-47621533 | None:intergenic | 30.0% |
| ACCCTCAAATAAAGCTATTA+TGG | + | chr5_1:47621585-47621604 | Msa0734020:intron | 30.0% | |
| !! | GCCATAATAGCTTTATTTGA+GGG | - | chr5_1:47621589-47621608 | None:intergenic | 30.0% |
| GTATACGTACTATATTTGAG+TGG | - | chr5_1:47621611-47621630 | None:intergenic | 30.0% | |
| TATACTACTCGAAACCAAAA+GGG | + | chr5_1:47621626-47621645 | Msa0734020:intron | 30.0% | |
| GTTGTAAACTATTCTCTCTA+TGG | - | chr5_1:47621720-47621739 | None:intergenic | 30.0% | |
| ACAATCATTCATCACAAAGT+AGG | + | chr5_1:47621865-47621884 | Msa0734020:intron | 30.0% | |
| GTGCATAGTAAATCATAACA+GGG | - | chr5_1:47622146-47622165 | None:intergenic | 30.0% | |
| AGTGCATAGTAAATCATAAC+AGG | - | chr5_1:47622147-47622166 | None:intergenic | 30.0% | |
| GGTCGTAATAACTATATTTG+AGG | - | chr5_1:47622195-47622214 | None:intergenic | 30.0% | |
| GTATACGTATCATATTTGAG+AGG | - | chr5_1:47622216-47622235 | None:intergenic | 30.0% | |
| ACACCAAATAAAAGTTTCTG+AGG | - | chr5_1:47622330-47622349 | None:intergenic | 30.0% | |
| ! | GACAGTATAGGTACTTTTAA+GGG | - | chr5_1:47622580-47622599 | None:intergenic | 30.0% |
| !!! | TACTGATTTTGAGATGAATG+GGG | - | chr5_1:47622614-47622633 | None:intergenic | 30.0% |
| !!! | GTTACTGATTTTGAGATGAA+TGG | - | chr5_1:47622616-47622635 | None:intergenic | 30.0% |
| ATTGTAAAAATACCCCACAT+TGG | - | chr5_1:47622704-47622723 | None:intergenic | 30.0% | |
| !! | ACTAGTTCTATCCAATATGT+GGG | + | chr5_1:47622739-47622758 | Msa0734020:intron | 30.0% |
| !! | AATTTGTTAGAACACAAGTG+TGG | - | chr5_1:47622796-47622815 | None:intergenic | 30.0% |
| !! | TCATTGGTTCTGTTGAAAAA+CGG | + | chr5_1:47622862-47622881 | Msa0734020:CDS | 30.0% |
| AATGGAAGAAAAGGTTTACT+AGG | - | chr5_1:47622895-47622914 | None:intergenic | 30.0% | |
| ! | TAGTAAACCTTTTCTTCCAT+TGG | + | chr5_1:47622894-47622913 | Msa0734020:CDS | 30.0% |
| AATGATATCGGATATCAATG+TGG | + | chr5_1:47622958-47622977 | Msa0734020:CDS | 30.0% | |
| TTTACTAAGTATGGATCTAG+TGG | + | chr5_1:47622991-47623010 | Msa0734020:CDS | 30.0% | |
| CTTTATATGCACTCAATTTC+AGG | + | chr5_1:47623114-47623133 | Msa0734020:intron | 30.0% | |
| ATATCAGAATCACAAGTGTT+AGG | - | chr5_1:47623356-47623375 | None:intergenic | 30.0% | |
| GAATCACAGATGTTATCTTT+GGG | + | chr5_1:47623463-47623482 | Msa0734020:CDS | 30.0% | |
| AATCACAGATGTTATCTTTG+GGG | + | chr5_1:47623464-47623483 | Msa0734020:CDS | 30.0% | |
| ACTCTTCTAAACCAATTCAT+TGG | - | chr5_1:47623513-47623532 | None:intergenic | 30.0% | |
| !! | TTATGGGCTAGCTTATAATA+AGG | + | chr5_1:47623596-47623615 | Msa0734020:CDS | 30.0% |
| TTCAGAGGGATTCATATACA+CGG | - | chr5_1:47619115-47619134 | None:intergenic | 35.0% | |
| GTGAAATCTTTAATGGCAGA+AGG | - | chr5_1:47619231-47619250 | None:intergenic | 35.0% | |
| GCCATTAAAGATTTCACCAT+TGG | + | chr5_1:47619234-47619253 | Msa0734020:CDS | 35.0% | |
| ! | CTCCTTGTATTTTGCAACTA+AGG | + | chr5_1:47619341-47619360 | Msa0734020:intron | 35.0% |
| TCCCTTAGTTGCAAAATACA+AGG | - | chr5_1:47619346-47619365 | None:intergenic | 35.0% | |
| TTCTTAGCAGTTGCACTATT+TGG | - | chr5_1:47619386-47619405 | None:intergenic | 35.0% | |
| AAATAGTGCAACTGCTAAGA+AGG | + | chr5_1:47619385-47619404 | Msa0734020:CDS | 35.0% | |
| ACTATATTTCCTCACAACGT+TGG | + | chr5_1:47619533-47619552 | Msa0734020:CDS | 35.0% | |
| CCTTTGTCCATAGCTAAAAT+TGG | - | chr5_1:47619629-47619648 | None:intergenic | 35.0% | |
| !!! | CCAATTTTAGCTATGGACAA+AGG | + | chr5_1:47619626-47619645 | Msa0734020:intron | 35.0% |
| AAAATGCATAATCACCTGTG+AGG | + | chr5_1:47619694-47619713 | Msa0734020:intron | 35.0% | |
| AAATGCATAATCACCTGTGA+GGG | + | chr5_1:47619695-47619714 | Msa0734020:intron | 35.0% | |
| !! | TCTTATGTTTCAGGTTTGCA+AGG | + | chr5_1:47620070-47620089 | Msa0734020:CDS | 35.0% |
| TTTCGACAAAGATGTTTGCA+TGG | - | chr5_1:47620208-47620227 | None:intergenic | 35.0% | |
| ! | CACAGAAAAAGGTGTAAATG+AGG | + | chr5_1:47620303-47620322 | Msa0734020:CDS | 35.0% |
| ! | CAGAAAAAGGTGTAAATGAG+GGG | + | chr5_1:47620305-47620324 | Msa0734020:CDS | 35.0% |
| TATCATATCAAGACTTGGAG+AGG | + | chr5_1:47620338-47620357 | Msa0734020:CDS | 35.0% | |
| ! | ACAAGGTGTTTCAACCATTA+TGG | + | chr5_1:47620393-47620412 | Msa0734020:CDS | 35.0% |
| ! | GGAAATGGATCTTTTATCGA+TGG | + | chr5_1:47620526-47620545 | Msa0734020:intron | 35.0% |
| CATGTCAATTCCAGCATTAA+TGG | - | chr5_1:47620889-47620908 | None:intergenic | 35.0% | |
| CATTAATGCTGGAATTGACA+TGG | + | chr5_1:47620887-47620906 | Msa0734020:CDS | 35.0% | |
| ! | GATGTCTTTAGTTCAATCAG+GGG | + | chr5_1:47621031-47621050 | Msa0734020:CDS | 35.0% |
| AGCAAAGATCTGTCAGTTAA+AGG | - | chr5_1:47621134-47621153 | None:intergenic | 35.0% | |
| TTTAACTGACAGATCTTTGC+TGG | + | chr5_1:47621133-47621152 | Msa0734020:CDS | 35.0% | |
| AGATCTTTGCTGGATATTGT+TGG | + | chr5_1:47621143-47621162 | Msa0734020:CDS | 35.0% | |
| CATCTAGTACTCACTGTAAA+TGG | + | chr5_1:47621326-47621345 | Msa0734020:intron | 35.0% | |
| !!! | CTTCGATGGGAATTTTTTCA+AGG | - | chr5_1:47621401-47621420 | None:intergenic | 35.0% |
| ATTCCCATCGAAGAGATTAT+CGG | + | chr5_1:47621408-47621427 | Msa0734020:intron | 35.0% | |
| ACACCGTGTTCAAGATAAAA+CGG | + | chr5_1:47621508-47621527 | Msa0734020:intron | 35.0% | |
| !! | GGCCATAATAGCTTTATTTG+AGG | - | chr5_1:47621590-47621609 | None:intergenic | 35.0% |
| GTATACTACTCGAAACCAAA+AGG | + | chr5_1:47621625-47621644 | Msa0734020:intron | 35.0% | |
| ACTCATTAACACAAGCCAAA+TGG | + | chr5_1:47621675-47621694 | Msa0734020:intron | 35.0% | |
| ! | TTTTTCTTCCCTTCTCCATT+TGG | - | chr5_1:47621693-47621712 | None:intergenic | 35.0% |
| AAATGGAGAAGGGAAGAAAA+AGG | + | chr5_1:47621692-47621711 | Msa0734020:intron | 35.0% | |
| ACTGATATGTGAGAAACTTG+AGG | + | chr5_1:47621738-47621757 | Msa0734020:intron | 35.0% | |
| AGGATAACTCGGATATAACT+CGG | + | chr5_1:47621765-47621784 | Msa0734020:intron | 35.0% | |
| ACTCTTAAAATACCCCACAT+CGG | - | chr5_1:47621959-47621978 | None:intergenic | 35.0% | |
| AGCAAAGATCTGTCAGTTAA+AGG | - | chr5_1:47621134-47621153 | None:intergenic | 35.0% | |
| TTTAACTGACAGATCTTTGC+TGG | + | chr5_1:47621133-47621152 | Msa0734020:CDS | 35.0% | |
| AGATCTTTGCTGGATATTGT+TGG | + | chr5_1:47621143-47621162 | Msa0734020:CDS | 35.0% | |
| CAAGGTAAGTGAAGTTTATC+TGG | + | chr5_1:47622047-47622066 | Msa0734020:intron | 35.0% | |
| TATACTACTCGAAACCGAAA+GGG | + | chr5_1:47622231-47622250 | Msa0734020:intron | 35.0% | |
| CTCTCTTCTTATATCCCTTT+CGG | - | chr5_1:47622248-47622267 | None:intergenic | 35.0% | |
| AACTCATTAACACAAGCCAA+AGG | + | chr5_1:47621674-47621693 | Msa0734020:intron | 35.0% | |
| ACTCATTAACACAAGCCAAA+GGG | + | chr5_1:47621675-47621694 | Msa0734020:intron | 35.0% | |
| AACTGATCCATGAGAAACTT+GGG | + | chr5_1:47622384-47622403 | Msa0734020:intron | 35.0% | |
| ! | CGACAGTATAGGTACTTTTA+AGG | - | chr5_1:47622581-47622600 | None:intergenic | 35.0% |
| CTCAAAATCAGTAACCCAAA+TGG | + | chr5_1:47622621-47622640 | Msa0734020:intron | 35.0% | |
| !! | CACTAGTTCTATCCAATATG+TGG | + | chr5_1:47622738-47622757 | Msa0734020:intron | 35.0% |
| GGAACTCATGCTAATGATAT+CGG | + | chr5_1:47622946-47622965 | Msa0734020:CDS | 35.0% | |
| GGATGGACATTTACTAAGTA+TGG | + | chr5_1:47622982-47623001 | Msa0734020:CDS | 35.0% | |
| AAACCTAACCAATTGTGATC+TGG | - | chr5_1:47623017-47623036 | None:intergenic | 35.0% | |
| AATTTCAGGCACAACTATCT+TGG | + | chr5_1:47623128-47623147 | Msa0734020:intron | 35.0% | |
| AACTATCTTGGATGCTGTTA+AGG | + | chr5_1:47623140-47623159 | Msa0734020:CDS | 35.0% | |
| GCTCTATGAATTCTGTTGTT+GGG | - | chr5_1:47623206-47623225 | None:intergenic | 35.0% | |
| ! | TCTTTTGCCATTGTTGCTAT+TGG | + | chr5_1:47623237-47623256 | Msa0734020:CDS | 35.0% |
| ACACTTGTGATTCTGATATC+TGG | + | chr5_1:47623357-47623376 | Msa0734020:CDS | 35.0% | |
| AAACTTTGTTCCAAGACCAA+AGG | - | chr5_1:47623387-47623406 | None:intergenic | 35.0% | |
| !! | GGAACAAAGTTTGTTGGAAA+AGG | + | chr5_1:47623395-47623414 | Msa0734020:CDS | 35.0% |
| GGAATCACAGATGTTATCTT+TGG | + | chr5_1:47623462-47623481 | Msa0734020:CDS | 35.0% | |
| AGGGTAAACTACCAATGAAT+TGG | + | chr5_1:47623499-47623518 | Msa0734020:CDS | 35.0% | |
| TATAATATAAGTGCGTGCCC+TGG | + | chr5_1:47618970-47618989 | Msa0734020:five_prime_UTR | 40.0% | |
| GTTGATGTCCAATGGTGAAA+AGG | - | chr5_1:47619022-47619041 | None:intergenic | 40.0% | |
| ! | TTTTTGATGCGAGCTTCAAC+TGG | - | chr5_1:47619138-47619157 | None:intergenic | 40.0% |
| TTAGCAGTTGCACTATTTGG+TGG | - | chr5_1:47619383-47619402 | None:intergenic | 40.0% | |
| !! | AGAAGGAAGTGTCATCTGAT+TGG | + | chr5_1:47619402-47619421 | Msa0734020:CDS | 40.0% |
| !! | GAAGGAAGTGTCATCTGATT+GGG | + | chr5_1:47619403-47619422 | Msa0734020:CDS | 40.0% |
| CACGGTAACAATAACGTCTA+TGG | + | chr5_1:47619506-47619525 | Msa0734020:CDS | 40.0% | |
| AATGCATAATCACCTGTGAG+GGG | + | chr5_1:47619696-47619715 | Msa0734020:intron | 40.0% | |
| TCACTTGAACTTAGAGCAAG+TGG | + | chr5_1:47619822-47619841 | Msa0734020:CDS | 40.0% | |
| TAGCTCCTAGTGTATCTGTA+AGG | + | chr5_1:47619859-47619878 | Msa0734020:intron | 40.0% | |
| AGATGCCTTACAGATACACT+AGG | - | chr5_1:47619867-47619886 | None:intergenic | 40.0% | |
| !! | TTGGATGATTTTCTGGAGGT+TGG | - | chr5_1:47620096-47620115 | None:intergenic | 40.0% |
| AACCTCCAGAAAATCATCCA+AGG | + | chr5_1:47620095-47620114 | Msa0734020:CDS | 40.0% | |
| ACCTCCAGAAAATCATCCAA+GGG | + | chr5_1:47620096-47620115 | Msa0734020:CDS | 40.0% | |
| TCCATCTCCAACAAAATGTC+TGG | - | chr5_1:47620281-47620300 | None:intergenic | 40.0% | |
| ! | AGACATTTTGTTGGAGATGG+AGG | + | chr5_1:47620280-47620299 | Msa0734020:CDS | 40.0% |
| TGCTATGCAATCCACATAAG+GGG | - | chr5_1:47620374-47620393 | None:intergenic | 40.0% | |
| GTGCTATGCAATCCACATAA+GGG | - | chr5_1:47620375-47620394 | None:intergenic | 40.0% | |
| TGTGCTATGCAATCCACATA+AGG | - | chr5_1:47620376-47620395 | None:intergenic | 40.0% | |
| ! | TATGTGGATTGCATAGCACA+AGG | + | chr5_1:47620376-47620395 | Msa0734020:CDS | 40.0% |
| GCTGGAATATGAGACCATAA+TGG | - | chr5_1:47620410-47620429 | None:intergenic | 40.0% | |
| TTATGGTCTCATATTCCAGC+TGG | + | chr5_1:47620410-47620429 | Msa0734020:CDS | 40.0% | |
| TAATCAGAAAGCGATGACCA+TGG | - | chr5_1:47620450-47620469 | None:intergenic | 40.0% | |
| GAAAGAAAAGCTAGGCTTCA+AGG | + | chr5_1:47620480-47620499 | Msa0734020:CDS | 40.0% | |
| TTTGTGATTTCTGACTGGGA+GGG | + | chr5_1:47620807-47620826 | Msa0734020:CDS | 40.0% | |
| TCGTTAACATATGCAGGTGA+TGG | + | chr5_1:47620974-47620993 | Msa0734020:intron | 40.0% | |
| GCATCATCAATCCTGGATAT+TGG | - | chr5_1:47621062-47621081 | None:intergenic | 40.0% | |
| CACTCTTAAAATCCGCTCAA+CGG | - | chr5_1:47621084-47621103 | None:intergenic | 40.0% | |
| CAAGGTAAGTGAAGTTTAGC+TGG | + | chr5_1:47621169-47621188 | Msa0734020:intron | 40.0% | |
| TTCCCATCGAAGAGATTATC+GGG | + | chr5_1:47621409-47621428 | Msa0734020:intron | 40.0% | |
| AACCCGATAATCTCTTCGAT+GGG | - | chr5_1:47621414-47621433 | None:intergenic | 40.0% | |
| ! | GTTTTATCTTGAACACGGTG+TGG | - | chr5_1:47621509-47621528 | None:intergenic | 40.0% |
| ! | CTCTATTCTTCTGTCCCTTT+TGG | - | chr5_1:47621643-47621662 | None:intergenic | 40.0% |
| TAACACAAGCCAAATGGAGA+AGG | + | chr5_1:47621681-47621700 | Msa0734020:intron | 40.0% | |
| AACACAAGCCAAATGGAGAA+GGG | + | chr5_1:47621682-47621701 | Msa0734020:intron | 40.0% | |
| TGTGAGAAACTTGAGGAACA+AGG | + | chr5_1:47621745-47621764 | Msa0734020:intron | 40.0% | |
| CTTGAGGAACAAGGATAACT+CGG | + | chr5_1:47621754-47621773 | Msa0734020:intron | 40.0% | |
| TGTATGTGATCTATCCGATG+TGG | + | chr5_1:47621942-47621961 | Msa0734020:intron | 40.0% | |
| GTATGTGATCTATCCGATGT+GGG | + | chr5_1:47621943-47621962 | Msa0734020:intron | 40.0% | |
| TATGTGATCTATCCGATGTG+GGG | + | chr5_1:47621944-47621963 | Msa0734020:intron | 40.0% | |
| GTATACTACTCGAAACCGAA+AGG | + | chr5_1:47622230-47622249 | Msa0734020:intron | 40.0% | |
| ! | TTTTTCTTCCCTTCTCCCTT+TGG | - | chr5_1:47622298-47622317 | None:intergenic | 40.0% |
| CAACTGATCCATGAGAAACT+TGG | + | chr5_1:47622383-47622402 | Msa0734020:intron | 40.0% | |
| ACTGATCCATGAGAAACTTG+GGG | + | chr5_1:47622385-47622404 | Msa0734020:intron | 40.0% | |
| CGACTTATTAAAACTTGGGG+AGG | + | chr5_1:47622431-47622450 | Msa0734020:intron | 40.0% | |
| !! | TATATCTTACGCGCTGATTG+AGG | - | chr5_1:47622539-47622558 | None:intergenic | 40.0% |
| GTTCGTAATCACGACAGTAT+AGG | - | chr5_1:47622592-47622611 | None:intergenic | 40.0% | |
| TAACCCAAATGGCTCAATCT+TGG | + | chr5_1:47622632-47622651 | Msa0734020:intron | 40.0% | |
| AACCCAAATGGCTCAATCTT+GGG | + | chr5_1:47622633-47622652 | Msa0734020:intron | 40.0% | |
| TGCATGTGATCTATCCAATG+TGG | + | chr5_1:47622687-47622706 | Msa0734020:intron | 40.0% | |
| GCATGTGATCTATCCAATGT+GGG | + | chr5_1:47622688-47622707 | Msa0734020:intron | 40.0% | |
| CATGTGATCTATCCAATGTG+GGG | + | chr5_1:47622689-47622708 | Msa0734020:intron | 40.0% | |
| TCTATCCAATATGTGGGACT+TGG | + | chr5_1:47622745-47622764 | Msa0734020:intron | 40.0% | |
| AAACACCAAGTCCCACATAT+TGG | - | chr5_1:47622753-47622772 | None:intergenic | 40.0% | |
| CAAGTGTGGCAATTGAAAGT+TGG | - | chr5_1:47622782-47622801 | None:intergenic | 40.0% | |
| TGAAGCAGTTCGAAAGTCAT+TGG | + | chr5_1:47622846-47622865 | Msa0734020:CDS | 40.0% | |
| GGTTCTGTTGAAAAACGGAA+AGG | + | chr5_1:47622867-47622886 | Msa0734020:CDS | 40.0% | |
| ! | AACCTTTTCTTCCATTGGAC+AGG | + | chr5_1:47622899-47622918 | Msa0734020:CDS | 40.0% |
| GATATCGGATATCAATGTGG+AGG | + | chr5_1:47622961-47622980 | Msa0734020:CDS | 40.0% | |
| CGCTCTATGAATTCTGTTGT+TGG | - | chr5_1:47623207-47623226 | None:intergenic | 40.0% | |
| TCTGATATCTGGAAGACCTT+TGG | + | chr5_1:47623368-47623387 | Msa0734020:CDS | 40.0% | |
| GGTCTTGGAACAAAGTTTGT+TGG | + | chr5_1:47623389-47623408 | Msa0734020:CDS | 40.0% | |
| TTTGGGGATCATGACTTCAA+GGG | + | chr5_1:47623480-47623499 | Msa0734020:CDS | 40.0% | |
| CATAACCAAGAGGGAATAAG+GGG | - | chr5_1:47623581-47623600 | None:intergenic | 40.0% | |
| CCATAACCAAGAGGGAATAA+GGG | - | chr5_1:47623582-47623601 | None:intergenic | 40.0% | |
| CCTTATTCCCTCTTGGTTAT+GGG | + | chr5_1:47623580-47623599 | Msa0734020:CDS | 40.0% | |
| ! | AGGTGGTTCCTTTTCACCAT+TGG | + | chr5_1:47619011-47619030 | Msa0734020:five_prime_UTR | 45.0% |
| GTCATCTGATTGGGCTGATA+TGG | + | chr5_1:47619412-47619431 | Msa0734020:CDS | 45.0% | |
| ATCTGATTGGGCTGATATGG+TGG | + | chr5_1:47619415-47619434 | Msa0734020:CDS | 45.0% | |
| AGGTCTGCAAAGATCCTAGA+TGG | + | chr5_1:47619993-47620012 | Msa0734020:intron | 45.0% | |
| GGTCTGCAAAGATCCTAGAT+GGG | + | chr5_1:47619994-47620013 | Msa0734020:intron | 45.0% | |
| GTCTGCAAAGATCCTAGATG+GGG | + | chr5_1:47619995-47620014 | Msa0734020:CDS | 45.0% | |
| TCATAGCATCTTCCCCATCT+AGG | - | chr5_1:47620010-47620029 | None:intergenic | 45.0% | |
| CCTCCAGAAAATCATCCAAG+GGG | + | chr5_1:47620097-47620116 | Msa0734020:CDS | 45.0% | |
| ! | TAGCCCCTTGGATGATTTTC+TGG | - | chr5_1:47620103-47620122 | None:intergenic | 45.0% |
| TCCAACAAAATGTCTGGCAC+AGG | - | chr5_1:47620275-47620294 | None:intergenic | 45.0% | |
| ! | GCCAGACATTTTGTTGGAGA+TGG | + | chr5_1:47620277-47620296 | Msa0734020:CDS | 45.0% |
| GTCTCATATTCCAGCTGGAA+TGG | + | chr5_1:47620415-47620434 | Msa0734020:CDS | 45.0% | |
| TGGAATGGAGTCAAACTCCA+TGG | + | chr5_1:47620430-47620449 | Msa0734020:CDS | 45.0% | |
| GAAATCACAAAGCCCTACAG+TGG | - | chr5_1:47620798-47620817 | None:intergenic | 45.0% | |
| ! | AGGGCTTTGTGATTTCTGAC+TGG | + | chr5_1:47620802-47620821 | Msa0734020:intron | 45.0% |
| ! | GGGCTTTGTGATTTCTGACT+GGG | + | chr5_1:47620803-47620822 | Msa0734020:intron | 45.0% |
| CTTTGTGATTTCTGACTGGG+AGG | + | chr5_1:47620806-47620825 | Msa0734020:CDS | 45.0% | |
| ! | GCTGGATATTGTTGGTTGCA+AGG | + | chr5_1:47621151-47621170 | Msa0734020:CDS | 45.0% |
| CAACCCGATAATCTCTTCGA+TGG | - | chr5_1:47621415-47621434 | None:intergenic | 45.0% | |
| GACTCTGTAAGGTAAGCACT+GGG | - | chr5_1:47621895-47621914 | None:intergenic | 45.0% | |
| AGACTCTGTAAGGTAAGCAC+TGG | - | chr5_1:47621896-47621915 | None:intergenic | 45.0% | |
| AGAAGGAGTGAGACTCTGTA+AGG | - | chr5_1:47621906-47621925 | None:intergenic | 45.0% | |
| ! | GCTGGATATTGTTGGTTGCA+AGG | + | chr5_1:47621151-47621170 | Msa0734020:CDS | 45.0% |
| TAACACAAGCCAAAGGGAGA+AGG | + | chr5_1:47622286-47622305 | Msa0734020:intron | 45.0% | |
| AACACAAGCCAAAGGGAGAA+GGG | + | chr5_1:47622287-47622306 | Msa0734020:intron | 45.0% | |
| CTTGTTCCCCAAGTTTCTCA+TGG | - | chr5_1:47622394-47622413 | None:intergenic | 45.0% | |
| CATGAGAAACTTGGGGAACA+AGG | + | chr5_1:47622392-47622411 | Msa0734020:intron | 45.0% | |
| CTCCCAAGATTGAGCCATTT+GGG | - | chr5_1:47622638-47622657 | None:intergenic | 45.0% | |
| ACTCCCAAGATTGAGCCATT+TGG | - | chr5_1:47622639-47622658 | None:intergenic | 45.0% | |
| TGCCTGTCCAATGGAAGAAA+AGG | - | chr5_1:47622904-47622923 | None:intergenic | 45.0% | |
| TCCAGCAACAAGGATTCTCT+TGG | - | chr5_1:47622929-47622948 | None:intergenic | 45.0% | |
| TAGCATGAGTTCCAGCAACA+AGG | - | chr5_1:47622939-47622958 | None:intergenic | 45.0% | |
| TCGGATATCAATGTGGAGGA+TGG | + | chr5_1:47622965-47622984 | Msa0734020:CDS | 45.0% | |
| TCTAGTGGCCAGATCACAAT+TGG | + | chr5_1:47623006-47623025 | Msa0734020:CDS | 45.0% | |
| TGGCCAGATCACAATTGGTT+AGG | + | chr5_1:47623011-47623030 | Msa0734020:intron | 45.0% | |
| GATGCTGTTAAGGAAGCTGT+GGG | + | chr5_1:47623150-47623169 | Msa0734020:CDS | 45.0% | |
| GGCTTCACCAATAGCAACAA+TGG | - | chr5_1:47623247-47623266 | None:intergenic | 45.0% | |
| ATCTGGAAGACCTTTGGTCT+TGG | + | chr5_1:47623374-47623393 | Msa0734020:CDS | 45.0% | |
| TAGAAGCTCTTGTAGCAGCA+TGG | + | chr5_1:47623418-47623437 | Msa0734020:CDS | 45.0% | |
| ATTCCATTTCCTTCACTGCC+GGG | - | chr5_1:47623447-47623466 | None:intergenic | 45.0% | |
| GATTCCATTTCCTTCACTGC+CGG | - | chr5_1:47623448-47623467 | None:intergenic | 45.0% | |
| ! | CTTTGGGGATCATGACTTCA+AGG | + | chr5_1:47623479-47623498 | Msa0734020:CDS | 45.0% |
| ACAGCTTGATCAGCCTGATA+AGG | + | chr5_1:47623536-47623555 | Msa0734020:CDS | 45.0% | |
| CAGCTTGATCAGCCTGATAA+GGG | + | chr5_1:47623537-47623556 | Msa0734020:CDS | 45.0% | |
| TTGATCAGCCTGATAAGGGA+GGG | + | chr5_1:47623541-47623560 | Msa0734020:CDS | 45.0% | |
| CATGAATTCCCTCCCTTATC+AGG | - | chr5_1:47623552-47623571 | None:intergenic | 45.0% | |
| CCCTTATTCCCTCTTGGTTA+TGG | + | chr5_1:47623579-47623598 | Msa0734020:CDS | 45.0% | |
| CCCATAACCAAGAGGGAATA+AGG | - | chr5_1:47623583-47623602 | None:intergenic | 45.0% | |
| AAGCTAGCCCATAACCAAGA+GGG | - | chr5_1:47623590-47623609 | None:intergenic | 45.0% | |
| TAAGCTAGCCCATAACCAAG+AGG | - | chr5_1:47623591-47623610 | None:intergenic | 45.0% | |
| !! | GCTGCAGAGTTGATGTCCAA+TGG | - | chr5_1:47619030-47619049 | None:intergenic | 50.0% |
| ! | CGAGCTTCAACTGGTTCAGA+GGG | - | chr5_1:47619129-47619148 | None:intergenic | 50.0% |
| ! | GATTGGGCTGATATGGTGGA+CGG | + | chr5_1:47619419-47619438 | Msa0734020:CDS | 50.0% |
| !! | ATTGGGCTGATATGGTGGAC+GGG | + | chr5_1:47619420-47619439 | Msa0734020:CDS | 50.0% |
| AGAAGCTGGCGCTTGAATCA+CGG | + | chr5_1:47619447-47619466 | Msa0734020:CDS | 50.0% | |
| ! | TTTCCTCACAACGTTGGCCT+CGG | + | chr5_1:47619539-47619558 | Msa0734020:CDS | 50.0% |
| ACACAAACCTAGTTGCTCCG+AGG | - | chr5_1:47619559-47619578 | None:intergenic | 50.0% | |
| ! | AAAAGCACATGACCCCTCAC+AGG | - | chr5_1:47619711-47619730 | None:intergenic | 50.0% |
| ! | CCCCTTGGATGATTTTCTGG+AGG | - | chr5_1:47620100-47620119 | None:intergenic | 50.0% |
| ! | GCCTGTGCCAGACATTTTGT+TGG | + | chr5_1:47620271-47620290 | Msa0734020:CDS | 50.0% |
| ! | GGAGATGGAGGCACAGAAAA+AGG | + | chr5_1:47620292-47620311 | Msa0734020:CDS | 50.0% |
| AGACTTGGAGAGGATCCACA+TGG | + | chr5_1:47620348-47620367 | Msa0734020:CDS | 50.0% | |
| AATCCACATAAGGGGCCATG+TGG | - | chr5_1:47620366-47620385 | None:intergenic | 50.0% | |
| GAGTTTGACTCCATTCCAGC+TGG | - | chr5_1:47620428-47620447 | None:intergenic | 50.0% | |
| !! | CAGGGGAAGTACCAATATCC+AGG | + | chr5_1:47621048-47621067 | Msa0734020:CDS | 50.0% |
| CTCAACGGCATCATCAATCC+TGG | - | chr5_1:47621069-47621088 | None:intergenic | 50.0% | |
| !! | GGATTGATGATGCCGTTGAG+CGG | + | chr5_1:47621069-47621088 | Msa0734020:CDS | 50.0% |
| GCCAAGAGAATCCTTGTTGC+TGG | + | chr5_1:47622925-47622944 | Msa0734020:CDS | 50.0% | |
| GGATGCTGTTAAGGAAGCTG+TGG | + | chr5_1:47623149-47623168 | Msa0734020:CDS | 50.0% | |
| TCACCTCCACACTCAGCATA+GGG | - | chr5_1:47623270-47623289 | None:intergenic | 50.0% | |
| CTTGATCAGCCTGATAAGGG+AGG | + | chr5_1:47623540-47623559 | Msa0734020:CDS | 50.0% | |
| GATGACCCCTTATTCCCTCT+TGG | + | chr5_1:47623573-47623592 | Msa0734020:CDS | 50.0% | |
| ! | GCGAGCTTCAACTGGTTCAG+AGG | - | chr5_1:47619130-47619149 | None:intergenic | 55.0% |
| CTGGCGCTTGAATCACGGTT+AGG | + | chr5_1:47619452-47619471 | Msa0734020:CDS | 55.0% | |
| TCCAAGGGGCTACCCATTTG+TGG | + | chr5_1:47620111-47620130 | Msa0734020:CDS | 55.0% | |
| CCTACCTCCCAGCCACAAAT+GGG | - | chr5_1:47620126-47620145 | None:intergenic | 55.0% | |
| GATCCACATGGCCCCTTATG+TGG | + | chr5_1:47620360-47620379 | Msa0734020:CDS | 55.0% | |
| CTCTTGGCATGCCTGTCCAA+TGG | - | chr5_1:47622913-47622932 | None:intergenic | 55.0% | |
| ACCTCCACACTCAGCATAGG+GGG | - | chr5_1:47623268-47623287 | None:intergenic | 55.0% | |
| CACCTCCACACTCAGCATAG+GGG | - | chr5_1:47623269-47623288 | None:intergenic | 55.0% | |
| GTCACCTCCACACTCAGCAT+AGG | - | chr5_1:47623271-47623290 | None:intergenic | 55.0% | |
| CTTGTAGCAGCATGGTTGCC+CGG | + | chr5_1:47623426-47623445 | Msa0734020:CDS | 55.0% | |
| TTGCCCGGCAGTGAAGGAAA+TGG | + | chr5_1:47623441-47623460 | Msa0734020:CDS | 55.0% | |
| ! | GGTGGACGGGTTTCAGAAGC+TGG | + | chr5_1:47619433-47619452 | Msa0734020:CDS | 60.0% |
| ! | ACGTTGGCCTCGGAGCAACT+AGG | + | chr5_1:47619549-47619568 | Msa0734020:CDS | 60.0% |
| GCCACAAATGGGTAGCCCCT+TGG | - | chr5_1:47620115-47620134 | None:intergenic | 60.0% | |
| AGGGGCTACCCATTTGTGGC+TGG | + | chr5_1:47620115-47620134 | Msa0734020:CDS | 60.0% | |
| GGGGCTACCCATTTGTGGCT+GGG | + | chr5_1:47620116-47620135 | Msa0734020:CDS | 60.0% | |
| GCTACCCATTTGTGGCTGGG+AGG | + | chr5_1:47620119-47620138 | Msa0734020:CDS | 60.0% | |
| CCCATTTGTGGCTGGGAGGT+AGG | + | chr5_1:47620123-47620142 | Msa0734020:intron | 60.0% | |
| GCCTACCTCCCAGCCACAAA+TGG | - | chr5_1:47620127-47620146 | None:intergenic | 60.0% | |
| TTTGTGGCTGGGAGGTAGGC+AGG | + | chr5_1:47620127-47620146 | Msa0734020:intron | 60.0% | |
| GAAGCCCCCTATGCTGAGTG+TGG | + | chr5_1:47623261-47623280 | Msa0734020:CDS | 60.0% | |
| GCTCCGAGGCCAACGTTGTG+AGG | - | chr5_1:47619545-47619564 | None:intergenic | 65.0% | |
| GCCCCCTATGCTGAGTGTGG+AGG | + | chr5_1:47623264-47623283 | Msa0734020:CDS | 65.0% | |
| GCATGGTTGCCCGGCAGTGA+AGG | + | chr5_1:47623435-47623454 | Msa0734020:CDS | 65.0% | |
| TGGCTGGGAGGTAGGCAGGC+AGG | + | chr5_1:47620131-47620150 | Msa0734020:intron | 70.0% | |
| TGGGAGGTAGGCAGGCAGGC+AGG | + | chr5_1:47620135-47620154 | Msa0734020:intron | 70.0% | |
| GAGGTAGGCAGGCAGGCAGG+AGG | + | chr5_1:47620138-47620157 | Msa0734020:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 47618903 | 47623635 | 47618903 | ID=Msa0734020;Name=Msa0734020 |
| chr5_1 | mRNA | 47618903 | 47623635 | 47618903 | ID=Msa0734020-mRNA-1;Parent=Msa0734020;Name=Msa0734020-mRNA-1;_AED=0.14;_eAED=0.14;_QI=202|0.75|0.44|1|1|1|9|0|609 |
| chr5_1 | exon | 47618903 | 47619255 | 47618903 | ID=Msa0734020-mRNA-1:exon:13630;Parent=Msa0734020-mRNA-1 |
| chr5_1 | exon | 47619363 | 47619570 | 47619363 | ID=Msa0734020-mRNA-1:exon:13631;Parent=Msa0734020-mRNA-1 |
| chr5_1 | exon | 47619785 | 47619875 | 47619785 | ID=Msa0734020-mRNA-1:exon:13632;Parent=Msa0734020-mRNA-1 |
| chr5_1 | exon | 47619995 | 47620140 | 47619995 | ID=Msa0734020-mRNA-1:exon:13633;Parent=Msa0734020-mRNA-1 |
| chr5_1 | exon | 47620258 | 47620501 | 47620258 | ID=Msa0734020-mRNA-1:exon:13634;Parent=Msa0734020-mRNA-1 |
| chr5_1 | exon | 47620804 | 47620908 | 47620804 | ID=Msa0734020-mRNA-1:exon:13635;Parent=Msa0734020-mRNA-1 |
| chr5_1 | exon | 47620990 | 47621172 | 47620990 | ID=Msa0734020-mRNA-1:exon:13636;Parent=Msa0734020-mRNA-1 |
| chr5_1 | exon | 47622826 | 47623027 | 47622826 | ID=Msa0734020-mRNA-1:exon:13637;Parent=Msa0734020-mRNA-1 |
| chr5_1 | exon | 47623136 | 47623635 | 47623136 | ID=Msa0734020-mRNA-1:exon:13638;Parent=Msa0734020-mRNA-1 |
| chr5_1 | five_prime_UTR | 47618903 | 47619104 | 47618903 | ID=Msa0734020-mRNA-1:five_prime_utr;Parent=Msa0734020-mRNA-1 |
| chr5_1 | CDS | 47619105 | 47619255 | 47619105 | ID=Msa0734020-mRNA-1:cds;Parent=Msa0734020-mRNA-1 |
| chr5_1 | CDS | 47619363 | 47619570 | 47619363 | ID=Msa0734020-mRNA-1:cds;Parent=Msa0734020-mRNA-1 |
| chr5_1 | CDS | 47619785 | 47619875 | 47619785 | ID=Msa0734020-mRNA-1:cds;Parent=Msa0734020-mRNA-1 |
| chr5_1 | CDS | 47619995 | 47620140 | 47619995 | ID=Msa0734020-mRNA-1:cds;Parent=Msa0734020-mRNA-1 |
| chr5_1 | CDS | 47620258 | 47620501 | 47620258 | ID=Msa0734020-mRNA-1:cds;Parent=Msa0734020-mRNA-1 |
| chr5_1 | CDS | 47620804 | 47620908 | 47620804 | ID=Msa0734020-mRNA-1:cds;Parent=Msa0734020-mRNA-1 |
| chr5_1 | CDS | 47620990 | 47621172 | 47620990 | ID=Msa0734020-mRNA-1:cds;Parent=Msa0734020-mRNA-1 |
| chr5_1 | CDS | 47622826 | 47623027 | 47622826 | ID=Msa0734020-mRNA-1:cds;Parent=Msa0734020-mRNA-1 |
| chr5_1 | CDS | 47623136 | 47623635 | 47623136 | ID=Msa0734020-mRNA-1:cds;Parent=Msa0734020-mRNA-1 |
| Gene Sequence |
| Protein sequence |
