Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0812960 | XP_003615675.1 | 96.685 | 362 | 12 | 0 | 1 | 362 | 1 | 362 | 0.0 | 716 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0812960 | sp|F4IQJ2|ELP5_ARATH | 50.272 | 368 | 159 | 6 | 1 | 350 | 1 | 362 | 8.73e-113 | 336 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0812960 | G7KE89 | 96.685 | 362 | 12 | 0 | 1 | 362 | 1 | 362 | 0.0 | 716 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0812960 | Msa0853450 | 0.829268 | 5.660378e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0812960 | MtrunA17_Chr5g0430021 | 96.685 | 362 | 12 | 0 | 1 | 362 | 1 | 362 | 0.0 | 716 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0812960 | AT2G18410.1 | 50.272 | 368 | 159 | 6 | 1 | 350 | 1 | 362 | 8.88e-114 | 336 |
| Msa0812960 | AT2G18410.2 | 47.260 | 292 | 135 | 5 | 1 | 279 | 1 | 286 | 1.98e-80 | 248 |
Find 108 sgRNAs with CRISPR-Local
Find 320 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAGTTCATTTCTTCAAAAT+TGG | 0.119835 | 5_3:-43412824 | None:intergenic |
| GATCAAATTTCAAGTATATT+TGG | 0.165288 | 5_3:+43411176 | Msa0812960:intron |
| TTCTTCCGAGAACTCCTTAT+TGG | 0.193034 | 5_3:+43411289 | Msa0812960:CDS |
| TTTCAACAAATGAGCATAAA+AGG | 0.205745 | 5_3:-43407850 | None:intergenic |
| GATTTGACTCACGGTGAAAT+TGG | 0.234369 | 5_3:+43412746 | Msa0812960:three_prime_UTR |
| TGAGTCAAATCGCTCAAAAT+AGG | 0.239236 | 5_3:-43412617 | None:intergenic |
| ACATTGCAGGATTCATGTTT+TGG | 0.290139 | 5_3:+43409304 | Msa0812960:intron |
| TAGAGTATGTTAGTTAGATA+TGG | 0.316832 | 5_3:-43407522 | None:intergenic |
| CCTCACTGCTGCTCTCTTCA+AGG | 0.319817 | 5_3:-43412334 | None:intergenic |
| CATATACTTGCAGGTTTAGT+TGG | 0.338834 | 5_3:+43409585 | Msa0812960:intron |
| CAACATTGGCTAAACAATAT+CGG | 0.340724 | 5_3:-43412564 | None:intergenic |
| CATATATCTAAATCATCATC+TGG | 0.349360 | 5_3:-43412455 | None:intergenic |
| TTGTAGTAGCAAGTGAAATT+TGG | 0.362698 | 5_3:-43409397 | None:intergenic |
| TTATAAATCAGTCAAGGATA+TGG | 0.367636 | 5_3:+43409421 | Msa0812960:CDS |
| CAATGGTATTACCGAGTCTA+TGG | 0.368131 | 5_3:-43409634 | None:intergenic |
| AAACAATTACCATTTGTTAG+AGG | 0.372404 | 5_3:-43407895 | None:intergenic |
| GAAGATGGAACAACCGTTGC+AGG | 0.375116 | 5_3:+43411520 | Msa0812960:CDS |
| AAGTTCATTTCTTCAAAATT+GGG | 0.378066 | 5_3:-43412823 | None:intergenic |
| GCAGTGTTGGAGTGAGATTT+TGG | 0.383722 | 5_3:-43407795 | None:intergenic |
| AGTGACACTGCTCTGCCGGC+TGG | 0.385086 | 5_3:-43407491 | None:intergenic |
| TGGTGACGGGTGGGAAGAAC+TGG | 0.395099 | 5_3:-43407631 | None:intergenic |
| ATTTCTAGGTGACTTAGATT+AGG | 0.399745 | 5_3:+43412504 | Msa0812960:three_prime_UTR |
| CGGAGAAGGAGCAAGTTGAT+AGG | 0.401470 | 5_3:+43412156 | Msa0812960:CDS |
| GGCTACGCAGATTGCTTAGA+AGG | 0.401578 | 5_3:-43410945 | None:intergenic |
| GTCAGACTCAAACGCAGAAA+TGG | 0.412350 | 5_3:+43411341 | Msa0812960:CDS |
| GAGTCAAATCGCTCAAAATA+GGG | 0.418007 | 5_3:-43412616 | None:intergenic |
| TCTGGGTCTTCATCAGAATC+TGG | 0.427379 | 5_3:-43412437 | None:intergenic |
| AAGGGTAAGACAAGGAAATC+TGG | 0.430423 | 5_3:+43409353 | Msa0812960:CDS |
| ATTTGACTCACGGTGAAATT+GGG | 0.433464 | 5_3:+43412747 | Msa0812960:three_prime_UTR |
| GAAAAGTTTAAAGTTGAAGC+AGG | 0.437344 | 5_3:+43411469 | Msa0812960:CDS |
| ACTTCTGCTTCAGCAGAAGA+TGG | 0.442521 | 5_3:+43411505 | Msa0812960:CDS |
| TTACGCGACGGCGCGTTAGA+AGG | 0.442752 | 5_3:+43407681 | Msa0812960:CDS |
| AACTTTCTTCCTCTAACAAA+TGG | 0.443920 | 5_3:+43407886 | Msa0812960:CDS |
| ACCTATTTCAAAGGGTAAAA+CGG | 0.446678 | 5_3:+43412361 | Msa0812960:CDS |
| TTCTAACGCGCCGTCGCGTA+AGG | 0.450290 | 5_3:-43407679 | None:intergenic |
| ATCATACCTTGGTGTTCAAA+AGG | 0.453627 | 5_3:-43412194 | None:intergenic |
| GATTGTTATACAGATCCTCT+TGG | 0.456861 | 5_3:+43409326 | Msa0812960:CDS |
| GATTTGACTCATGGTGAAAT+CGG | 0.458998 | 5_3:+43412629 | Msa0812960:three_prime_UTR |
| TTTCTCCAATAAGGAGTTCT+CGG | 0.461886 | 5_3:-43411294 | None:intergenic |
| TGAGTCAAATCACTCAAAAT+CGG | 0.470213 | 5_3:-43412734 | None:intergenic |
| AGTGTCTTTGATAGTGAGAG+TGG | 0.476958 | 5_3:-43407715 | None:intergenic |
| CTACCATCATAAATTTGAAT+CGG | 0.477609 | 5_3:-43412305 | None:intergenic |
| CTTGAAGAGAGCAGCAGTGA+GGG | 0.479698 | 5_3:+43412335 | Msa0812960:CDS |
| CTTGCTCCTTCTCCGACAGC+TGG | 0.481450 | 5_3:-43412148 | None:intergenic |
| ATTCGGACATCGTTGGTGAC+GGG | 0.481584 | 5_3:-43407644 | None:intergenic |
| ATCGACGGGGAGAGGCTGTA+TGG | 0.481683 | 5_3:-43407597 | None:intergenic |
| GATTCGGACATCGTTGGTGA+CGG | 0.483438 | 5_3:-43407645 | None:intergenic |
| AACATTGGCTAAACAATATC+GGG | 0.485573 | 5_3:-43412563 | None:intergenic |
| CTCACTGCTGCTCTCTTCAA+GGG | 0.486177 | 5_3:-43412333 | None:intergenic |
| GTGACACTGCTCTGCCGGCT+GGG | 0.496872 | 5_3:-43407490 | None:intergenic |
| GCACCGATTCAAATTTATGA+TGG | 0.500504 | 5_3:+43412302 | Msa0812960:CDS |
| TAAGGATCTGCAAATTGATT+CGG | 0.502422 | 5_3:-43407661 | None:intergenic |
| ATTCTAGAATCGACGGGGAG+AGG | 0.502767 | 5_3:-43407605 | None:intergenic |
| TACAGATCCTCTTGGTTGGA+AGG | 0.505892 | 5_3:+43409334 | Msa0812960:CDS |
| TTGAAGAGAGCAGCAGTGAG+GGG | 0.511953 | 5_3:+43412336 | Msa0812960:CDS |
| GCGATTACTGAATTAGGAAG+AGG | 0.516301 | 5_3:+43409458 | Msa0812960:CDS |
| GTAGAGTGACACTGCTCTGC+CGG | 0.516846 | 5_3:-43407495 | None:intergenic |
| GGGGAGAGGCTGTATGGAAG+TGG | 0.516852 | 5_3:-43407591 | None:intergenic |
| CAATCTCCAGCTGTCGGAGA+AGG | 0.518414 | 5_3:+43412142 | Msa0812960:CDS |
| TTCTGACCTTCATGAGGAGA+GGG | 0.523680 | 5_3:+43411208 | Msa0812960:CDS |
| GTTATACAGATCCTCTTGGT+TGG | 0.526377 | 5_3:+43409330 | Msa0812960:CDS |
| GCAAGTGAAATTTGGTCAGA+AGG | 0.527173 | 5_3:-43409389 | None:intergenic |
| TGGAAGATTCTAGAATCGAC+GGG | 0.536263 | 5_3:-43407611 | None:intergenic |
| GCATCTTTGCAGTCAGTCGC+AGG | 0.541954 | 5_3:+43410922 | Msa0812960:CDS |
| CAAATTGATTCGGACATCGT+TGG | 0.543305 | 5_3:-43407651 | None:intergenic |
| CTGGAAGATTCTAGAATCGA+CGG | 0.544574 | 5_3:-43407612 | None:intergenic |
| AATGTGAGAGAAAACGTTGA+AGG | 0.547299 | 5_3:-43407754 | None:intergenic |
| CTGCAGCCCTCTCCTCATGA+AGG | 0.549659 | 5_3:-43411214 | None:intergenic |
| GAAAATATATAATCTCACCT+AGG | 0.551369 | 5_3:-43412394 | None:intergenic |
| AAAATATATAATCTCACCTA+GGG | 0.558090 | 5_3:-43412393 | None:intergenic |
| ACAGATCCTCTTGGTTGGAA+GGG | 0.558800 | 5_3:+43409335 | Msa0812960:CDS |
| TCACTCAAATTGCTCAACAT+CGG | 0.561989 | 5_3:-43412660 | None:intergenic |
| GGAGAAGGAGCAAGTTGATA+GGG | 0.569101 | 5_3:+43412157 | Msa0812960:CDS |
| CGGACATCGTTGGTGACGGG+TGG | 0.573253 | 5_3:-43407641 | None:intergenic |
| GTGTCTTTGATAGTGAGAGT+GGG | 0.577637 | 5_3:-43407714 | None:intergenic |
| TCTTGAGTACATGTCCTCCA+TGG | 0.578101 | 5_3:+43411241 | Msa0812960:CDS |
| TGAAGAGAGCAGCAGTGAGG+GGG | 0.579393 | 5_3:+43412337 | Msa0812960:CDS |
| AAATCAAAACCAAACCCAGC+CGG | 0.581365 | 5_3:+43407476 | Msa0812960:five_prime_UTR |
| CTAAGCAATCTGCGTAGCCA+TGG | 0.584264 | 5_3:+43410949 | Msa0812960:CDS |
| CGTTTGTGTTGCCATAGACT+CGG | 0.590273 | 5_3:+43409623 | Msa0812960:CDS |
| AAGTTTAAAGTTGAAGCAGG+AGG | 0.591459 | 5_3:+43411472 | Msa0812960:CDS |
| AAAACGGAGGACTCAGCCCT+AGG | 0.592196 | 5_3:+43412377 | Msa0812960:CDS |
| ATTCTGACCTTCATGAGGAG+AGG | 0.594867 | 5_3:+43411207 | Msa0812960:CDS |
| ATATATCTAAATCATCATCT+GGG | 0.597804 | 5_3:-43412454 | None:intergenic |
| GTCTTACCCTTCCAACCAAG+AGG | 0.598767 | 5_3:-43409341 | None:intergenic |
| AACAACGACAATAGCAGTGT+TGG | 0.601345 | 5_3:-43407808 | None:intergenic |
| GGAGCAAGTTGATAGGGCAA+AGG | 0.602173 | 5_3:+43412163 | Msa0812960:CDS |
| TACAACTTATAAATCAGTCA+AGG | 0.606201 | 5_3:+43409415 | Msa0812960:CDS |
| AACAAATGAGCATAAAAGGA+GGG | 0.610214 | 5_3:-43407846 | None:intergenic |
| ACAATTCAATCTCCAGCTGT+CGG | 0.612927 | 5_3:+43412136 | Msa0812960:CDS |
| CAACAAATGAGCATAAAAGG+AGG | 0.613225 | 5_3:-43407847 | None:intergenic |
| ATTGCATTCTGACCTTCATG+AGG | 0.614181 | 5_3:+43411202 | Msa0812960:CDS |
| GAGAAAACGTTGAAGGCGAA+AGG | 0.615791 | 5_3:-43407747 | None:intergenic |
| TGATTCTACACTAGCCACCA+TGG | 0.622429 | 5_3:-43411258 | None:intergenic |
| GGACATCGTTGGTGACGGGT+GGG | 0.623775 | 5_3:-43407640 | None:intergenic |
| TGAGTACATGTCCTCCATGG+TGG | 0.628826 | 5_3:+43411244 | Msa0812960:CDS |
| CGTTGCAGGCTTACTGCCGA+AGG | 0.634937 | 5_3:+43411534 | Msa0812960:CDS |
| GAGAGGCTGTATGGAAGTGG+CGG | 0.638938 | 5_3:-43407588 | None:intergenic |
| CTTCGGCAGTAAGCCTGCAA+CGG | 0.639094 | 5_3:-43411533 | None:intergenic |
| ATTTGCAGATCCTTACGCGA+CGG | 0.643811 | 5_3:+43407669 | Msa0812960:CDS |
| AAATGGACGAGTTAGAGTGA+CGG | 0.646988 | 5_3:+43411358 | Msa0812960:CDS |
| CCTTGAAGAGAGCAGCAGTG+AGG | 0.653081 | 5_3:+43412334 | Msa0812960:CDS |
| GGTGAAATTGGGTAAAATCG+AGG | 0.676074 | 5_3:+43412758 | Msa0812960:three_prime_UTR |
| TTGGTTGGAAGGGTAAGACA+AGG | 0.697722 | 5_3:+43409345 | Msa0812960:CDS |
| AGTCTATGGCAACACAAACG+CGG | 0.706339 | 5_3:-43409620 | None:intergenic |
| TATTTCAAAGGGTAAAACGG+AGG | 0.732486 | 5_3:+43412364 | Msa0812960:CDS |
| GGAAGATTCTAGAATCGACG+GGG | 0.748501 | 5_3:-43407610 | None:intergenic |
| TTCTACACTAGCCACCATGG+AGG | 0.784181 | 5_3:-43411255 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATTTTTGAAATGAATTTT+AGG | + | chr5_3:43409064-43409083 | Msa0812960:intron | 10.0% |
| !!! | TATTTTTGAAATGAATTTTA+GGG | + | chr5_3:43409065-43409084 | Msa0812960:intron | 10.0% |
| !! | TAAAGTATAAAAGAGTTTAA+TGG | - | chr5_3:43409246-43409265 | None:intergenic | 15.0% |
| !! | TATAAAAGAAAGCAAAAATA+TGG | - | chr5_3:43409546-43409565 | None:intergenic | 15.0% |
| !!! | TTTTATAAATTTTGCGAAAA+AGG | + | chr5_3:43410161-43410180 | Msa0812960:intron | 15.0% |
| !! | ATATCTTTATAATCACTTAA+TGG | - | chr5_3:43410596-43410615 | None:intergenic | 15.0% |
| !! | ATACTTAATTGGAATATTAA+TGG | - | chr5_3:43410802-43410821 | None:intergenic | 15.0% |
| !!! | AAATTTAGGATTTTAAATTG+TGG | + | chr5_3:43411715-43411734 | Msa0812960:intron | 15.0% |
| !!! | AATTTAGGATTTTAAATTGT+GGG | + | chr5_3:43411716-43411735 | Msa0812960:intron | 15.0% |
| !!! | TGAAACTTTATGTTTTTAAT+AGG | + | chr5_3:43412112-43412131 | Msa0812960:intron | 15.0% |
| !! | TAACTTCTTCTTTATATTTC+TGG | + | chr5_3:43407926-43407945 | Msa0812960:intron | 20.0% |
| !! | TTTACTCATATCATCTTAAT+CGG | - | chr5_3:43408285-43408304 | None:intergenic | 20.0% |
| !! | AAGAAAAATTGTTACCAAAT+AGG | + | chr5_3:43408676-43408695 | Msa0812960:intron | 20.0% |
| !!! | CTTTTATTTATTTTGGTTGT+TGG | + | chr5_3:43408835-43408854 | Msa0812960:intron | 20.0% |
| !!! | TATAAGATTGAATGTGTTTT+TGG | + | chr5_3:43408979-43408998 | Msa0812960:intron | 20.0% |
| !!! | ACAAAATAATGGATTCATAT+TGG | - | chr5_3:43409112-43409131 | None:intergenic | 20.0% |
| !! | TGATTATGAAAATTGTAAGA+AGG | + | chr5_3:43409879-43409898 | Msa0812960:intron | 20.0% |
| !! | GATTATGAAAATTGTAAGAA+GGG | + | chr5_3:43409880-43409899 | Msa0812960:intron | 20.0% |
| !! | ATAAAAAGATTACTGTATCA+AGG | - | chr5_3:43409943-43409962 | None:intergenic | 20.0% |
| !!! | AAATACTTTTTTATGATGAG+AGG | - | chr5_3:43410043-43410062 | None:intergenic | 20.0% |
| !!! | CATCATAAAAAAGTATTTTG+TGG | + | chr5_3:43410045-43410064 | Msa0812960:intron | 20.0% |
| !! | CTCTATAATATCTTTGTAAT+TGG | + | chr5_3:43410388-43410407 | Msa0812960:intron | 20.0% |
| !! | ACTATAGAATGTAAATCATT+TGG | - | chr5_3:43410483-43410502 | None:intergenic | 20.0% |
| !! | AATGATTTACATTCTATAGT+TGG | + | chr5_3:43410483-43410502 | Msa0812960:intron | 20.0% |
| !! | ATCTTGTTACAATTTAATGA+TGG | + | chr5_3:43410614-43410633 | Msa0812960:intron | 20.0% |
| !!! | TCTTTTTCTTTTTTGACAAA+GGG | - | chr5_3:43410701-43410720 | None:intergenic | 20.0% |
| !!! | TTCTTTTTCTTTTTTGACAA+AGG | - | chr5_3:43410702-43410721 | None:intergenic | 20.0% |
| !! | ATATTCCAATTAAGTATGTT+CGG | + | chr5_3:43410805-43410824 | Msa0812960:intron | 20.0% |
| !!! | ATTTGCTCTTATTTTGAATA+CGG | + | chr5_3:43410973-43410992 | Msa0812960:intron | 20.0% |
| !! | AGTAGATAATATTTATGTCA+CGG | + | chr5_3:43411098-43411117 | Msa0812960:intron | 20.0% |
| !!! | GATCAAATTTCAAGTATATT+TGG | + | chr5_3:43411176-43411195 | Msa0812960:intron | 20.0% |
| !!! | ATTCAAAGGTATTTTTTCTA+AGG | + | chr5_3:43411623-43411642 | Msa0812960:intron | 20.0% |
| !!! | TGTTATATGTAATTTGCAAT+TGG | + | chr5_3:43411854-43411873 | Msa0812960:intron | 20.0% |
| !! | TTCAACCTATTATTTATTTG+CGG | - | chr5_3:43412096-43412115 | None:intergenic | 20.0% |
| !! | AAAATATATAATCTCACCTA+GGG | - | chr5_3:43412396-43412415 | None:intergenic | 20.0% |
| !! | ATATATCTAAATCATCATCT+GGG | - | chr5_3:43412457-43412476 | None:intergenic | 20.0% |
| !! | AAGTTCATTTCTTCAAAATT+GGG | - | chr5_3:43412826-43412845 | None:intergenic | 20.0% |
| !! | AAAGTTCATTTCTTCAAAAT+TGG | - | chr5_3:43412827-43412846 | None:intergenic | 20.0% |
| ! | TAGAGTATGTTAGTTAGATA+TGG | - | chr5_3:43407525-43407544 | None:intergenic | 25.0% |
| !!! | GTTGAGTTTGATTTTGATTT+GGG | - | chr5_3:43407569-43407588 | None:intergenic | 25.0% |
| ! | TTTCAACAAATGAGCATAAA+AGG | - | chr5_3:43407853-43407872 | None:intergenic | 25.0% |
| !! | AAACAATTACCATTTGTTAG+AGG | - | chr5_3:43407898-43407917 | None:intergenic | 25.0% |
| !! | TTTCATTTTCAATGTGAATC+TGG | + | chr5_3:43407983-43408002 | Msa0812960:intron | 25.0% |
| ! | ATAACTGATAAGATAACTGA+TGG | + | chr5_3:43408053-43408072 | Msa0812960:intron | 25.0% |
| ! | CAAATTGAATTTGTAGTGTT+TGG | + | chr5_3:43408110-43408129 | Msa0812960:intron | 25.0% |
| ! | TATATAAGCTCAAATGTTAC+TGG | + | chr5_3:43408326-43408345 | Msa0812960:intron | 25.0% |
| ! | AGGACTAAAAAATAACTGTT+CGG | - | chr5_3:43408396-43408415 | None:intergenic | 25.0% |
| !! | ACAATTAGCTATTTGTTACA+AGG | - | chr5_3:43408423-43408442 | None:intergenic | 25.0% |
| ! | AATGAACCTATAACATATAG+CGG | + | chr5_3:43408496-43408515 | Msa0812960:intron | 25.0% |
| ! | AAGCTGTTATCTAATTCAAA+GGG | + | chr5_3:43408796-43408815 | Msa0812960:intron | 25.0% |
| !!! | CTCGCTACTTTTATTTATTT+TGG | + | chr5_3:43408828-43408847 | Msa0812960:intron | 25.0% |
| ! | AAAATGGAACCAATACAAAA+GGG | - | chr5_3:43408886-43408905 | None:intergenic | 25.0% |
| ! | AAAAATGGAACCAATACAAA+AGG | - | chr5_3:43408887-43408906 | None:intergenic | 25.0% |
| ! | AATATTATTAACGACAAGCT+CGG | - | chr5_3:43408935-43408954 | None:intergenic | 25.0% |
| ! | CAAATAACCATTTGAAAAGT+GGG | - | chr5_3:43409142-43409161 | None:intergenic | 25.0% |
| ! | TACAACTTATAAATCAGTCA+AGG | + | chr5_3:43409415-43409434 | Msa0812960:CDS | 25.0% |
| ! | TTATAAATCAGTCAAGGATA+TGG | + | chr5_3:43409421-43409440 | Msa0812960:CDS | 25.0% |
| !! | TTTTCAATTCATATACTTGC+AGG | + | chr5_3:43409576-43409595 | Msa0812960:intron | 25.0% |
| !!! | ATTCTAGTCAATGTTTTTTG+TGG | + | chr5_3:43409701-43409720 | Msa0812960:intron | 25.0% |
| ! | TTTGCAATTAATATGGTGAT+TGG | + | chr5_3:43409725-43409744 | Msa0812960:intron | 25.0% |
| !!! | CAAGGTTATTTTATTTAGCT+TGG | - | chr5_3:43409925-43409944 | None:intergenic | 25.0% |
| !! | TATAAATTTTGCGAAAAAGG+TGG | + | chr5_3:43410164-43410183 | Msa0812960:intron | 25.0% |
| !! | TTGTCATTTGTGATAGAATT+GGG | + | chr5_3:43410340-43410359 | Msa0812960:intron | 25.0% |
| ! | AAAGATATTATAGAGCTTCA+GGG | - | chr5_3:43410383-43410402 | None:intergenic | 25.0% |
| !! | TTACAATTTAATGATGGAAC+TGG | + | chr5_3:43410620-43410639 | Msa0812960:intron | 25.0% |
| !! | TTCTAGTGTAAAAGGAATTT+TGG | - | chr5_3:43410744-43410763 | None:intergenic | 25.0% |
| ! | AATTGTAAATCTTCTTTCTC+AGG | - | chr5_3:43410769-43410788 | None:intergenic | 25.0% |
| !!! | TAATCCTAATGGATTCTTTT+TGG | + | chr5_3:43410868-43410887 | Msa0812960:intron | 25.0% |
| ! | ATATCCAAAAAGAATCCATT+AGG | - | chr5_3:43410875-43410894 | None:intergenic | 25.0% |
| ! | GTAGATAATATTTATGTCAC+GGG | + | chr5_3:43411099-43411118 | Msa0812960:intron | 25.0% |
| !! | TCTGACATTAAATTTTCCTT+GGG | - | chr5_3:43411327-43411346 | None:intergenic | 25.0% |
| ! | TTCTTTATCGTGAACTTATT+TGG | + | chr5_3:43411392-43411411 | Msa0812960:intron | 25.0% |
| ! | AACAAAAATAAGATCTCTTC+AGG | - | chr5_3:43411574-43411593 | None:intergenic | 25.0% |
| ! | GAAATGAAAATTTAGATGCT+AGG | + | chr5_3:43411645-43411664 | Msa0812960:intron | 25.0% |
| !! | TTTCAATCAAAGCATCAAAT+AGG | - | chr5_3:43411675-43411694 | None:intergenic | 25.0% |
| ! | GTGCTTCTAACATTAAATTT+AGG | + | chr5_3:43411701-43411720 | Msa0812960:intron | 25.0% |
| ! | ATTGACCGCAAATAAATAAT+AGG | + | chr5_3:43412088-43412107 | Msa0812960:intron | 25.0% |
| ! | TACAAATCTATATCATACCT+TGG | - | chr5_3:43412208-43412227 | None:intergenic | 25.0% |
| ! | CTACCATCATAAATTTGAAT+CGG | - | chr5_3:43412308-43412327 | None:intergenic | 25.0% |
| ! | GAAAATATATAATCTCACCT+AGG | - | chr5_3:43412397-43412416 | None:intergenic | 25.0% |
| ! | CATATATCTAAATCATCATC+TGG | - | chr5_3:43412458-43412477 | None:intergenic | 25.0% |
| !! | TTAGTGTTTTCTGTATTTCT+AGG | + | chr5_3:43412490-43412509 | Msa0812960:three_prime_UTR | 25.0% |
| !!! | TTGATTTTGATTTGGGATAG+AGG | - | chr5_3:43407562-43407581 | None:intergenic | 30.0% |
| !!! | GGTTGAGTTTGATTTTGATT+TGG | - | chr5_3:43407570-43407589 | None:intergenic | 30.0% |
| TAAGGATCTGCAAATTGATT+CGG | - | chr5_3:43407664-43407683 | None:intergenic | 30.0% | |
| AACAAATGAGCATAAAAGGA+GGG | - | chr5_3:43407849-43407868 | None:intergenic | 30.0% | |
| ! | GCTCATTTGTTGAAAAACAA+AGG | + | chr5_3:43407858-43407877 | Msa0812960:CDS | 30.0% |
| AACTTTCTTCCTCTAACAAA+TGG | + | chr5_3:43407886-43407905 | Msa0812960:CDS | 30.0% | |
| TTATGACATATTCAATCCAC+TGG | - | chr5_3:43408159-43408178 | None:intergenic | 30.0% | |
| ACTAGCTGATAAATACGAAA+TGG | + | chr5_3:43408179-43408198 | Msa0812960:intron | 30.0% | |
| ! | GTTACCAAATAGGTCTATTT+TGG | + | chr5_3:43408686-43408705 | Msa0812960:intron | 30.0% |
| AAAAGGAGAATCCATAACTA+AGG | - | chr5_3:43408764-43408783 | None:intergenic | 30.0% | |
| AGCTTCTATCACAATCAAAA+AGG | - | chr5_3:43408781-43408800 | None:intergenic | 30.0% | |
| GAAGCTGTTATCTAATTCAA+AGG | + | chr5_3:43408795-43408814 | Msa0812960:intron | 30.0% | |
| AGCTGTTATCTAATTCAAAG+GGG | + | chr5_3:43408797-43408816 | Msa0812960:intron | 30.0% | |
| ATATTATTAACGACAAGCTC+GGG | - | chr5_3:43408934-43408953 | None:intergenic | 30.0% | |
| TGGGTAACATGACAAAATAA+TGG | - | chr5_3:43409123-43409142 | None:intergenic | 30.0% | |
| CCAAATAACCATTTGAAAAG+TGG | - | chr5_3:43409143-43409162 | None:intergenic | 30.0% | |
| !! | CCACTTTTCAAATGGTTATT+TGG | + | chr5_3:43409140-43409159 | Msa0812960:intron | 30.0% |
| TTAATGGTTGTATACTGCTA+GGG | - | chr5_3:43409230-43409249 | None:intergenic | 30.0% | |
| TTTAATGGTTGTATACTGCT+AGG | - | chr5_3:43409231-43409250 | None:intergenic | 30.0% | |
| TTTCTAATGTGTTACATTGC+AGG | + | chr5_3:43409291-43409310 | Msa0812960:intron | 30.0% | |
| TTGTAGTAGCAAGTGAAATT+TGG | - | chr5_3:43409400-43409419 | None:intergenic | 30.0% | |
| !! | GGATATGGATAAGTTGTTTT+TGG | + | chr5_3:43409436-43409455 | Msa0812960:CDS | 30.0% |
| !! | TTTTTGGCGATTACTGAATT+AGG | + | chr5_3:43409452-43409471 | Msa0812960:CDS | 30.0% |
| !! | AAGAGGTATTGATTGCTATT+AGG | + | chr5_3:43409475-43409494 | Msa0812960:intron | 30.0% |
| ! | TCAAAGCTATTTCAAGTCAA+TGG | - | chr5_3:43409654-43409673 | None:intergenic | 30.0% |
| TGAAGTTGAATATACTCTGT+TGG | + | chr5_3:43409675-43409694 | Msa0812960:intron | 30.0% | |
| ! | TTGTGGCTTTGCAATTAATA+TGG | + | chr5_3:43409718-43409737 | Msa0812960:intron | 30.0% |
| ! | AGGTCTATTATTCAAGTTTG+TGG | - | chr5_3:43410023-43410042 | None:intergenic | 30.0% |
| AGTCTGTATGTTTACATTGT+AGG | + | chr5_3:43410068-43410087 | Msa0812960:intron | 30.0% | |
| GTCTGTATGTTTACATTGTA+GGG | + | chr5_3:43410069-43410088 | Msa0812960:intron | 30.0% | |
| ! | TTACTGGGTTGAAAATGATT+AGG | + | chr5_3:43410273-43410292 | Msa0812960:intron | 30.0% |
| !! | TGAAAATGATTAGGTTGAGT+TGG | + | chr5_3:43410282-43410301 | Msa0812960:intron | 30.0% |
| ! | CTTGTCATTTGTGATAGAAT+TGG | + | chr5_3:43410339-43410358 | Msa0812960:intron | 30.0% |
| ! | TGTCATTTGTGATAGAATTG+GGG | + | chr5_3:43410341-43410360 | Msa0812960:intron | 30.0% |
| AAGATATTATAGAGCTTCAG+GGG | - | chr5_3:43410382-43410401 | None:intergenic | 30.0% | |
| CAAAGATATTATAGAGCTTC+AGG | - | chr5_3:43410384-43410403 | None:intergenic | 30.0% | |
| ! | AAAAAACTGGAAAGTATGGT+TGG | + | chr5_3:43410523-43410542 | Msa0812960:intron | 30.0% |
| !! | TTATTTCTGGGAAGTTTAAG+AGG | - | chr5_3:43410568-43410587 | None:intergenic | 30.0% |
| ! | TTAATGGCTCGTTTATTTCT+GGG | - | chr5_3:43410580-43410599 | None:intergenic | 30.0% |
| AGAAACCGAACATACTTAAT+TGG | - | chr5_3:43410813-43410832 | None:intergenic | 30.0% | |
| GTGTGTGTATATAATCCTAA+TGG | + | chr5_3:43410857-43410876 | Msa0812960:intron | 30.0% | |
| CAAAATAAGAGCAAATACCA+TGG | - | chr5_3:43410969-43410988 | None:intergenic | 30.0% | |
| ATAATATTTATGTCACGGGT+TGG | + | chr5_3:43411103-43411122 | Msa0812960:intron | 30.0% | |
| ! | GGTAAAGTTTTTCTCCAATA+AGG | - | chr5_3:43411306-43411325 | None:intergenic | 30.0% |
| ! | GTCTGACATTAAATTTTCCT+TGG | - | chr5_3:43411328-43411347 | None:intergenic | 30.0% |
| GAATTGCTAATCTTCAAAAC+TGG | + | chr5_3:43411414-43411433 | Msa0812960:intron | 30.0% | |
| ! | GAAAAGTTTAAAGTTGAAGC+AGG | + | chr5_3:43411469-43411488 | Msa0812960:CDS | 30.0% |
| ! | ATATGCGCTCTTTTATAAAG+GGG | - | chr5_3:43411602-43411621 | None:intergenic | 30.0% |
| ! | GATATGCGCTCTTTTATAAA+GGG | - | chr5_3:43411603-43411622 | None:intergenic | 30.0% |
| ! | TGATATGCGCTCTTTTATAA+AGG | - | chr5_3:43411604-43411623 | None:intergenic | 30.0% |
| TGTATTTGAGCCATTTCTTA+CGG | + | chr5_3:43412224-43412243 | Msa0812960:intron | 30.0% | |
| GATTTAAACACCGTAAGAAA+TGG | - | chr5_3:43412237-43412256 | None:intergenic | 30.0% | |
| ACCTATTTCAAAGGGTAAAA+CGG | + | chr5_3:43412361-43412380 | Msa0812960:CDS | 30.0% | |
| ! | ATTTCTAGGTGACTTAGATT+AGG | + | chr5_3:43412504-43412523 | Msa0812960:three_prime_UTR | 30.0% |
| ! | AACATTGGCTAAACAATATC+GGG | - | chr5_3:43412566-43412585 | None:intergenic | 30.0% |
| ! | CAACATTGGCTAAACAATAT+CGG | - | chr5_3:43412567-43412586 | None:intergenic | 30.0% |
| !! | ATACGCAATTTTGACAACAT+TGG | - | chr5_3:43412581-43412600 | None:intergenic | 30.0% |
| TGAGTCAAATCACTCAAAAT+CGG | - | chr5_3:43412737-43412756 | None:intergenic | 30.0% | |
| !! | ATTTTGAGTGATTTGACTCA+CGG | + | chr5_3:43412737-43412756 | Msa0812960:three_prime_UTR | 30.0% |
| !!! | GTTTTGATTTTTCAGCCTAG+GGG | - | chr5_3:43407466-43407485 | None:intergenic | 35.0% |
| !!! | GGTTTTGATTTTTCAGCCTA+GGG | - | chr5_3:43407467-43407486 | None:intergenic | 35.0% |
| !!! | TGGTTTTGATTTTTCAGCCT+AGG | - | chr5_3:43407468-43407487 | None:intergenic | 35.0% |
| AATGTGAGAGAAAACGTTGA+AGG | - | chr5_3:43407757-43407776 | None:intergenic | 35.0% | |
| CAACAAATGAGCATAAAAGG+AGG | - | chr5_3:43407850-43407869 | None:intergenic | 35.0% | |
| ! | GTGAATCTGGAATGACATTT+AGG | + | chr5_3:43407996-43408015 | Msa0812960:intron | 35.0% |
| ! | GCTATTTGTTACAAGGTCAT+AGG | - | chr5_3:43408416-43408435 | None:intergenic | 35.0% |
| !! | GCTATTTGCTATAAGCTCAT+AGG | - | chr5_3:43408468-43408487 | None:intergenic | 35.0% |
| ATGAGCTTATAGCAAATAGC+AGG | + | chr5_3:43408468-43408487 | Msa0812960:intron | 35.0% | |
| CTTATAGCAAATAGCAGGTA+GGG | + | chr5_3:43408473-43408492 | Msa0812960:intron | 35.0% | |
| GCTTATCCGCTATATGTTAT+AGG | - | chr5_3:43408505-43408524 | None:intergenic | 35.0% | |
| ATAAAGCTAGTTCAAGCAAG+TGG | + | chr5_3:43408550-43408569 | Msa0812960:intron | 35.0% | |
| AGGACCAAAATAGACCTATT+TGG | - | chr5_3:43408693-43408712 | None:intergenic | 35.0% | |
| CTTAAAGCTTATAAGCTCGT+AGG | - | chr5_3:43408713-43408732 | None:intergenic | 35.0% | |
| TTATCTAATTCAAAGGGGCT+GGG | + | chr5_3:43408802-43408821 | Msa0812960:intron | 35.0% | |
| ! | TTTTAGTGGCCCTTTTGTAT+TGG | + | chr5_3:43408874-43408893 | Msa0812960:intron | 35.0% |
| CTACTAAGCTCACGAAAAAA+TGG | - | chr5_3:43408902-43408921 | None:intergenic | 35.0% | |
| !! | CATGTTACCCACTTTTCAAA+TGG | + | chr5_3:43409132-43409151 | Msa0812960:intron | 35.0% |
| GATTGTGTGACATTGACAAA+TGG | + | chr5_3:43409168-43409187 | Msa0812960:intron | 35.0% | |
| ! | ACATTGCAGGATTCATGTTT+TGG | + | chr5_3:43409304-43409323 | Msa0812960:intron | 35.0% |
| GATTGTTATACAGATCCTCT+TGG | + | chr5_3:43409326-43409345 | Msa0812960:CDS | 35.0% | |
| !! | GGTATTGATTGCTATTAGGT+TGG | + | chr5_3:43409479-43409498 | Msa0812960:intron | 35.0% |
| CATATACTTGCAGGTTTAGT+TGG | + | chr5_3:43409585-43409604 | Msa0812960:intron | 35.0% | |
| CGAAAATCTCACAAACTGAT+GGG | - | chr5_3:43409973-43409992 | None:intergenic | 35.0% | |
| ACGAAAATCTCACAAACTGA+TGG | - | chr5_3:43409974-43409993 | None:intergenic | 35.0% | |
| !!! | CAGTTCACTTCTGTTTTGAT+AGG | + | chr5_3:43410230-43410249 | Msa0812960:intron | 35.0% |
| CAATTCCTATCACTTAGCAT+GGG | + | chr5_3:43410446-43410465 | Msa0812960:intron | 35.0% | |
| !!! | CAGTTTTTTCCCAAGCTTTA+GGG | - | chr5_3:43410512-43410531 | None:intergenic | 35.0% |
| TGGGAAAAAACTGGAAAGTA+TGG | + | chr5_3:43410519-43410538 | Msa0812960:intron | 35.0% | |
| CTTAATGGCTCGTTTATTTC+TGG | - | chr5_3:43410581-43410600 | None:intergenic | 35.0% | |
| !! | AAGGAATTTTGGAAACTTGC+AGG | - | chr5_3:43410733-43410752 | None:intergenic | 35.0% |
| CTCAGGAATTCTAGTGTAAA+AGG | - | chr5_3:43410752-43410771 | None:intergenic | 35.0% | |
| TTTCTCCAATAAGGAGTTCT+CGG | - | chr5_3:43411297-43411316 | None:intergenic | 35.0% | |
| TTGGAGAAAAACTTTACCCA+AGG | + | chr5_3:43411308-43411327 | Msa0812960:CDS | 35.0% | |
| ! | AAGTTTAAAGTTGAAGCAGG+AGG | + | chr5_3:43411472-43411491 | Msa0812960:CDS | 35.0% |
| ! | TATGCGCTCTTTTATAAAGG+GGG | - | chr5_3:43411601-43411620 | None:intergenic | 35.0% |
| ! | AAAGAGCGCATATCATTCAA+AGG | + | chr5_3:43411609-43411628 | Msa0812960:intron | 35.0% |
| ! | TTTTAAATTGTGGGCCGATT+TGG | + | chr5_3:43411725-43411744 | Msa0812960:intron | 35.0% |
| TCTGCTGTAATGATCCAAAT+CGG | - | chr5_3:43411742-43411761 | None:intergenic | 35.0% | |
| ACTGTACTGTACAATCAACT+AGG | - | chr5_3:43411811-43411830 | None:intergenic | 35.0% | |
| TATCGCGTGTGTATATAAGA+AGG | - | chr5_3:43411952-43411971 | None:intergenic | 35.0% | |
| ATCACACACCATATCTTGTT+TGG | - | chr5_3:43412049-43412068 | None:intergenic | 35.0% | |
| !! | ATCATACCTTGGTGTTCAAA+AGG | - | chr5_3:43412197-43412216 | None:intergenic | 35.0% |
| ! | TGCTTAAGCTCTTCTCTTTT+AGG | + | chr5_3:43412272-43412291 | Msa0812960:intron | 35.0% |
| !! | AGCTCTTCTCTTTTAGGAAA+TGG | + | chr5_3:43412278-43412297 | Msa0812960:intron | 35.0% |
| !! | GCACCGATTCAAATTTATGA+TGG | + | chr5_3:43412302-43412321 | Msa0812960:CDS | 35.0% |
| !!! | TCCGTTTTACCCTTTGAAAT+AGG | - | chr5_3:43412365-43412384 | None:intergenic | 35.0% |
| TATTTCAAAGGGTAAAACGG+AGG | + | chr5_3:43412364-43412383 | Msa0812960:CDS | 35.0% | |
| GAGTCAAATCGCTCAAAATA+GGG | - | chr5_3:43412619-43412638 | None:intergenic | 35.0% | |
| TGAGTCAAATCGCTCAAAAT+AGG | - | chr5_3:43412620-43412639 | None:intergenic | 35.0% | |
| ! | ATTTTGAGCGATTTGACTCA+TGG | + | chr5_3:43412620-43412639 | Msa0812960:three_prime_UTR | 35.0% |
| GATTTGACTCATGGTGAAAT+CGG | + | chr5_3:43412629-43412648 | Msa0812960:three_prime_UTR | 35.0% | |
| TCACTCAAATTGCTCAACAT+CGG | - | chr5_3:43412663-43412682 | None:intergenic | 35.0% | |
| ATTTGACTCACGGTGAAATT+GGG | + | chr5_3:43412747-43412766 | Msa0812960:three_prime_UTR | 35.0% | |
| AAATCAAAACCAAACCCAGC+CGG | + | chr5_3:43407476-43407495 | Msa0812960:five_prime_UTR | 40.0% | |
| !! | TGGAAGATTCTAGAATCGAC+GGG | - | chr5_3:43407614-43407633 | None:intergenic | 40.0% |
| !! | CTGGAAGATTCTAGAATCGA+CGG | - | chr5_3:43407615-43407634 | None:intergenic | 40.0% |
| !! | CAAATTGATTCGGACATCGT+TGG | - | chr5_3:43407654-43407673 | None:intergenic | 40.0% |
| !! | GTGTCTTTGATAGTGAGAGT+GGG | - | chr5_3:43407717-43407736 | None:intergenic | 40.0% |
| !! | AGTGTCTTTGATAGTGAGAG+TGG | - | chr5_3:43407718-43407737 | None:intergenic | 40.0% |
| AACAACGACAATAGCAGTGT+TGG | - | chr5_3:43407811-43407830 | None:intergenic | 40.0% | |
| TTTGGTAAGCTAGCTGATAG+TGG | + | chr5_3:43408128-43408147 | Msa0812960:intron | 40.0% | |
| ATAGCTAATTGTTGCCCAAC+AGG | + | chr5_3:43408431-43408450 | Msa0812960:intron | 40.0% | |
| AGGACCAAAAGATACCTGTT+GGG | - | chr5_3:43408448-43408467 | None:intergenic | 40.0% | |
| TAGGACCAAAAGATACCTGT+TGG | - | chr5_3:43408449-43408468 | None:intergenic | 40.0% | |
| GCTTATAGCAAATAGCAGGT+AGG | + | chr5_3:43408472-43408491 | Msa0812960:intron | 40.0% | |
| GTTATCTAATTCAAAGGGGC+TGG | + | chr5_3:43408801-43408820 | Msa0812960:intron | 40.0% | |
| !! | TTTTGTGCTGCGCTTTTTAG+TGG | + | chr5_3:43408860-43408879 | Msa0812960:intron | 40.0% |
| TGTGTGACATTGACAAATGG+TGG | + | chr5_3:43409171-43409190 | Msa0812960:intron | 40.0% | |
| GTTATACAGATCCTCTTGGT+TGG | + | chr5_3:43409330-43409349 | Msa0812960:CDS | 40.0% | |
| AAGGGTAAGACAAGGAAATC+TGG | + | chr5_3:43409353-43409372 | Msa0812960:CDS | 40.0% | |
| GCAAGTGAAATTTGGTCAGA+AGG | - | chr5_3:43409392-43409411 | None:intergenic | 40.0% | |
| GCGATTACTGAATTAGGAAG+AGG | + | chr5_3:43409458-43409477 | Msa0812960:CDS | 40.0% | |
| ! | AGGTTGGAAATGTCGCTTAT+TGG | + | chr5_3:43409495-43409514 | Msa0812960:intron | 40.0% |
| CAATGGTATTACCGAGTCTA+TGG | - | chr5_3:43409637-43409656 | None:intergenic | 40.0% | |
| CAACCCAGTAACAACGAATT+GGG | - | chr5_3:43410264-43410283 | None:intergenic | 40.0% | |
| TCAACCCAGTAACAACGAAT+TGG | - | chr5_3:43410265-43410284 | None:intergenic | 40.0% | |
| !! | GTTGAGTTGGTTAGACTGTT+AGG | + | chr5_3:43410295-43410314 | Msa0812960:intron | 40.0% |
| AGTTGGTTAGACTGTTAGGA+TGG | + | chr5_3:43410299-43410318 | Msa0812960:intron | 40.0% | |
| GTTGGTTAGACTGTTAGGAT+GGG | + | chr5_3:43410300-43410319 | Msa0812960:intron | 40.0% | |
| ! | TTAGGATGGGAGTATAGGTA+TGG | + | chr5_3:43410313-43410332 | Msa0812960:intron | 40.0% |
| TGATAGAATTGGGGCCTTTA+AGG | + | chr5_3:43410350-43410369 | Msa0812960:intron | 40.0% | |
| CCATGCTAAGTGATAGGAAT+TGG | - | chr5_3:43410448-43410467 | None:intergenic | 40.0% | |
| CCAATTCCTATCACTTAGCA+TGG | + | chr5_3:43410445-43410464 | Msa0812960:intron | 40.0% | |
| AAGTTCCCATGCTAAGTGAT+AGG | - | chr5_3:43410454-43410473 | None:intergenic | 40.0% | |
| ! | TAGTTGGTTTCCCTAAAGCT+TGG | + | chr5_3:43410499-43410518 | Msa0812960:intron | 40.0% |
| ! | AGTTGGTTTCCCTAAAGCTT+GGG | + | chr5_3:43410500-43410519 | Msa0812960:intron | 40.0% |
| !!! | CCAGTTTTTTCCCAAGCTTT+AGG | - | chr5_3:43410513-43410532 | None:intergenic | 40.0% |
| CCTAAAGCTTGGGAAAAAAC+TGG | + | chr5_3:43410510-43410529 | Msa0812960:intron | 40.0% | |
| ACTCTCACATTCTAGACTTC+TGG | - | chr5_3:43411064-43411083 | None:intergenic | 40.0% | |
| ATTGCATTCTGACCTTCATG+AGG | + | chr5_3:43411202-43411221 | Msa0812960:CDS | 40.0% | |
| TTCTTCCGAGAACTCCTTAT+TGG | + | chr5_3:43411289-43411308 | Msa0812960:CDS | 40.0% | |
| AAATGGACGAGTTAGAGTGA+CGG | + | chr5_3:43411358-43411377 | Msa0812960:CDS | 40.0% | |
| GGAAACTAAAGACTGACCTT+CGG | - | chr5_3:43411553-43411572 | None:intergenic | 40.0% | |
| ! | ATGCGCTCTTTTATAAAGGG+GGG | - | chr5_3:43411600-43411619 | None:intergenic | 40.0% |
| GCAACTACATCTGATTGTGA+GGG | - | chr5_3:43411774-43411793 | None:intergenic | 40.0% | |
| TGCAACTACATCTGATTGTG+AGG | - | chr5_3:43411775-43411794 | None:intergenic | 40.0% | |
| CTGTACAATCAACTAGGTTG+CGG | - | chr5_3:43411805-43411824 | None:intergenic | 40.0% | |
| ACTAAGTGCTTAGCATGTGT+AGG | - | chr5_3:43411922-43411941 | None:intergenic | 40.0% | |
| CACAGTCACAAACAGTTGTA+AGG | + | chr5_3:43412010-43412029 | Msa0812960:intron | 40.0% | |
| GACAGAGACCAAACAAGATA+TGG | + | chr5_3:43412038-43412057 | Msa0812960:intron | 40.0% | |
| ACAATTCAATCTCCAGCTGT+CGG | + | chr5_3:43412136-43412155 | Msa0812960:CDS | 40.0% | |
| GATTTGACTCACGGTGAAAT+TGG | + | chr5_3:43412746-43412765 | Msa0812960:three_prime_UTR | 40.0% | |
| GGTGAAATTGGGTAAAATCG+AGG | + | chr5_3:43412758-43412777 | Msa0812960:three_prime_UTR | 40.0% | |
| !! | TTGATTTTTCAGCCTAGGGG+AGG | - | chr5_3:43407463-43407482 | None:intergenic | 45.0% |
| !! | GGAAGATTCTAGAATCGACG+GGG | - | chr5_3:43407613-43407632 | None:intergenic | 45.0% |
| ATTTGCAGATCCTTACGCGA+CGG | + | chr5_3:43407669-43407688 | Msa0812960:CDS | 45.0% | |
| GAGAAAACGTTGAAGGCGAA+AGG | - | chr5_3:43407750-43407769 | None:intergenic | 45.0% | |
| !! | GTTGGAGTGAGATTTTGGTG+AGG | - | chr5_3:43407793-43407812 | None:intergenic | 45.0% |
| !! | GCAGTGTTGGAGTGAGATTT+TGG | - | chr5_3:43407798-43407817 | None:intergenic | 45.0% |
| !! | GCTGATAGTGGATAAACCAG+TGG | + | chr5_3:43408140-43408159 | Msa0812960:intron | 45.0% |
| ! | GTTGCCCAACAGGTATCTTT+TGG | + | chr5_3:43408441-43408460 | Msa0812960:intron | 45.0% |
| CCATAACTAAGGCTTCTGCT+TGG | - | chr5_3:43408753-43408772 | None:intergenic | 45.0% | |
| CCAAGCAGAAGCCTTAGTTA+TGG | + | chr5_3:43408750-43408769 | Msa0812960:intron | 45.0% | |
| TACAGATCCTCTTGGTTGGA+AGG | + | chr5_3:43409334-43409353 | Msa0812960:CDS | 45.0% | |
| ACAGATCCTCTTGGTTGGAA+GGG | + | chr5_3:43409335-43409354 | Msa0812960:CDS | 45.0% | |
| TTGGTTGGAAGGGTAAGACA+AGG | + | chr5_3:43409345-43409364 | Msa0812960:CDS | 45.0% | |
| AGTCTATGGCAACACAAACG+CGG | - | chr5_3:43409623-43409642 | None:intergenic | 45.0% | |
| CGTTTGTGTTGCCATAGACT+CGG | + | chr5_3:43409623-43409642 | Msa0812960:CDS | 45.0% | |
| TGTAGGGAACTCATGCAGTA+AGG | + | chr5_3:43410085-43410104 | Msa0812960:intron | 45.0% | |
| GTAGGGAACTCATGCAGTAA+GGG | + | chr5_3:43410086-43410105 | Msa0812960:intron | 45.0% | |
| TAGGGAACTCATGCAGTAAG+GGG | + | chr5_3:43410087-43410106 | Msa0812960:intron | 45.0% | |
| CAGTAACAACGAATTGGGTG+GGG | - | chr5_3:43410259-43410278 | None:intergenic | 45.0% | |
| CCAGTAACAACGAATTGGGT+GGG | - | chr5_3:43410260-43410279 | None:intergenic | 45.0% | |
| CCACCCAATTCGTTGTTACT+GGG | + | chr5_3:43410258-43410277 | Msa0812960:intron | 45.0% | |
| ! | GACTGTTAGGATGGGAGTAT+AGG | + | chr5_3:43410308-43410327 | Msa0812960:intron | 45.0% |
| TCTGGGAAGTTTAAGAGGTG+AGG | - | chr5_3:43410563-43410582 | None:intergenic | 45.0% | |
| ATTCTGACCTTCATGAGGAG+AGG | + | chr5_3:43411207-43411226 | Msa0812960:CDS | 45.0% | |
| TTCTGACCTTCATGAGGAGA+GGG | + | chr5_3:43411208-43411227 | Msa0812960:CDS | 45.0% | |
| TCTTGAGTACATGTCCTCCA+TGG | + | chr5_3:43411241-43411260 | Msa0812960:CDS | 45.0% | |
| TGATTCTACACTAGCCACCA+TGG | - | chr5_3:43411261-43411280 | None:intergenic | 45.0% | |
| GTCAGACTCAAACGCAGAAA+TGG | + | chr5_3:43411341-43411360 | Msa0812960:CDS | 45.0% | |
| ACTTCTGCTTCAGCAGAAGA+TGG | + | chr5_3:43411505-43411524 | Msa0812960:CDS | 45.0% | |
| !! | GGAGAAGGAGCAAGTTGATA+GGG | + | chr5_3:43412157-43412176 | Msa0812960:CDS | 45.0% |
| ! | GTGCTTCCTTTTGAACACCA+AGG | + | chr5_3:43412188-43412207 | Msa0812960:CDS | 45.0% |
| TCTGGGTCTTCATCAGAATC+TGG | - | chr5_3:43412440-43412459 | None:intergenic | 45.0% | |
| !! | ATTCTAGAATCGACGGGGAG+AGG | - | chr5_3:43407608-43407627 | None:intergenic | 50.0% |
| !! | ATTCGGACATCGTTGGTGAC+GGG | - | chr5_3:43407647-43407666 | None:intergenic | 50.0% |
| ! | GATTCGGACATCGTTGGTGA+CGG | - | chr5_3:43407648-43407667 | None:intergenic | 50.0% |
| GTCTTACCCTTCCAACCAAG+AGG | - | chr5_3:43409344-43409363 | None:intergenic | 50.0% | |
| CCCACCCAATTCGTTGTTAC+TGG | + | chr5_3:43410257-43410276 | Msa0812960:intron | 50.0% | |
| CCCAGTAACAACGAATTGGG+TGG | - | chr5_3:43410261-43410280 | None:intergenic | 50.0% | |
| TTCAGGGGTCTGCACCTTAA+AGG | - | chr5_3:43410367-43410386 | None:intergenic | 50.0% | |
| GGCTACGCAGATTGCTTAGA+AGG | - | chr5_3:43410948-43410967 | None:intergenic | 50.0% | |
| CTAAGCAATCTGCGTAGCCA+TGG | + | chr5_3:43410949-43410968 | Msa0812960:CDS | 50.0% | |
| TGAGTACATGTCCTCCATGG+TGG | + | chr5_3:43411244-43411263 | Msa0812960:CDS | 50.0% | |
| TTCTACACTAGCCACCATGG+AGG | - | chr5_3:43411258-43411277 | None:intergenic | 50.0% | |
| GAAGATGGAACAACCGTTGC+AGG | + | chr5_3:43411520-43411539 | Msa0812960:CDS | 50.0% | |
| AGCATGTGTAGGCATGGCAT+CGG | - | chr5_3:43411911-43411930 | None:intergenic | 50.0% | |
| GTGCTTAGCATGTGTAGGCA+TGG | - | chr5_3:43411917-43411936 | None:intergenic | 50.0% | |
| !! | CGGAGAAGGAGCAAGTTGAT+AGG | + | chr5_3:43412156-43412175 | Msa0812960:CDS | 50.0% |
| !! | GGAGCAAGTTGATAGGGCAA+AGG | + | chr5_3:43412163-43412182 | Msa0812960:CDS | 50.0% |
| CTCACTGCTGCTCTCTTCAA+GGG | - | chr5_3:43412336-43412355 | None:intergenic | 50.0% | |
| CTTGAAGAGAGCAGCAGTGA+GGG | + | chr5_3:43412335-43412354 | Msa0812960:CDS | 50.0% | |
| TTGAAGAGAGCAGCAGTGAG+GGG | + | chr5_3:43412336-43412355 | Msa0812960:CDS | 50.0% | |
| !! | TGAGGGGGCACCTATTTCAA+AGG | + | chr5_3:43412352-43412371 | Msa0812960:CDS | 50.0% |
| !! | GAGGGGGCACCTATTTCAAA+GGG | + | chr5_3:43412353-43412372 | Msa0812960:CDS | 50.0% |
| GTAGAGTGACACTGCTCTGC+CGG | - | chr5_3:43407498-43407517 | None:intergenic | 55.0% | |
| GAGAGGCTGTATGGAAGTGG+CGG | - | chr5_3:43407591-43407610 | None:intergenic | 55.0% | |
| GCATCTTTGCAGTCAGTCGC+AGG | + | chr5_3:43410922-43410941 | Msa0812960:CDS | 55.0% | |
| CTTCGGCAGTAAGCCTGCAA+CGG | - | chr5_3:43411536-43411555 | None:intergenic | 55.0% | |
| CAATCTCCAGCTGTCGGAGA+AGG | + | chr5_3:43412142-43412161 | Msa0812960:CDS | 55.0% | |
| CCTCACTGCTGCTCTCTTCA+AGG | - | chr5_3:43412337-43412356 | None:intergenic | 55.0% | |
| CCTTGAAGAGAGCAGCAGTG+AGG | + | chr5_3:43412334-43412353 | Msa0812960:CDS | 55.0% | |
| TGAAGAGAGCAGCAGTGAGG+GGG | + | chr5_3:43412337-43412356 | Msa0812960:CDS | 55.0% | |
| AAAACGGAGGACTCAGCCCT+AGG | + | chr5_3:43412377-43412396 | Msa0812960:CDS | 55.0% | |
| GGGGAGAGGCTGTATGGAAG+TGG | - | chr5_3:43407594-43407613 | None:intergenic | 60.0% | |
| ATCGACGGGGAGAGGCTGTA+TGG | - | chr5_3:43407600-43407619 | None:intergenic | 60.0% | |
| !! | TGGTGACGGGTGGGAAGAAC+TGG | - | chr5_3:43407634-43407653 | None:intergenic | 60.0% |
| !! | GGACATCGTTGGTGACGGGT+GGG | - | chr5_3:43407643-43407662 | None:intergenic | 60.0% |
| TTCTAACGCGCCGTCGCGTA+AGG | - | chr5_3:43407682-43407701 | None:intergenic | 60.0% | |
| TTACGCGACGGCGCGTTAGA+AGG | + | chr5_3:43407681-43407700 | Msa0812960:CDS | 60.0% | |
| CTGCAGCCCTCTCCTCATGA+AGG | - | chr5_3:43411217-43411236 | None:intergenic | 60.0% | |
| CGTTGCAGGCTTACTGCCGA+AGG | + | chr5_3:43411534-43411553 | Msa0812960:CDS | 60.0% | |
| CTTGCTCCTTCTCCGACAGC+TGG | - | chr5_3:43412151-43412170 | None:intergenic | 60.0% | |
| ! | ACTGCTCTGCCGGCTGGGTT+TGG | - | chr5_3:43407488-43407507 | None:intergenic | 65.0% |
| ! | GTGACACTGCTCTGCCGGCT+GGG | - | chr5_3:43407493-43407512 | None:intergenic | 65.0% |
| AGTGACACTGCTCTGCCGGC+TGG | - | chr5_3:43407494-43407513 | None:intergenic | 65.0% | |
| !! | CGGACATCGTTGGTGACGGG+TGG | - | chr5_3:43407644-43407663 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 43407452 | 43412849 | 43407452 | ID=Msa0812960;Name=Msa0812960 |
| chr5_3 | mRNA | 43407452 | 43412849 | 43407452 | ID=Msa0812960-mRNA-1;Parent=Msa0812960;Name=Msa0812960-mRNA-1;_AED=0.09;_eAED=0.09;_QI=205|1|1|1|1|1|8|371|362 |
| chr5_3 | exon | 43407452 | 43407907 | 43407452 | ID=Msa0812960-mRNA-1:exon:13328;Parent=Msa0812960-mRNA-1 |
| chr5_3 | exon | 43409313 | 43409479 | 43409313 | ID=Msa0812960-mRNA-1:exon:13329;Parent=Msa0812960-mRNA-1 |
| chr5_3 | exon | 43409598 | 43409644 | 43409598 | ID=Msa0812960-mRNA-1:exon:13330;Parent=Msa0812960-mRNA-1 |
| chr5_3 | exon | 43410901 | 43410970 | 43410901 | ID=Msa0812960-mRNA-1:exon:13331;Parent=Msa0812960-mRNA-1 |
| chr5_3 | exon | 43411177 | 43411379 | 43411177 | ID=Msa0812960-mRNA-1:exon:13332;Parent=Msa0812960-mRNA-1 |
| chr5_3 | exon | 43411466 | 43411555 | 43411466 | ID=Msa0812960-mRNA-1:exon:13333;Parent=Msa0812960-mRNA-1 |
| chr5_3 | exon | 43412134 | 43412209 | 43412134 | ID=Msa0812960-mRNA-1:exon:13334;Parent=Msa0812960-mRNA-1 |
| chr5_3 | exon | 43412294 | 43412849 | 43412294 | ID=Msa0812960-mRNA-1:exon:13335;Parent=Msa0812960-mRNA-1 |
| chr5_3 | five_prime_UTR | 43407452 | 43407656 | 43407452 | ID=Msa0812960-mRNA-1:five_prime_utr;Parent=Msa0812960-mRNA-1 |
| chr5_3 | CDS | 43407657 | 43407907 | 43407657 | ID=Msa0812960-mRNA-1:cds;Parent=Msa0812960-mRNA-1 |
| chr5_3 | CDS | 43409313 | 43409479 | 43409313 | ID=Msa0812960-mRNA-1:cds;Parent=Msa0812960-mRNA-1 |
| chr5_3 | CDS | 43409598 | 43409644 | 43409598 | ID=Msa0812960-mRNA-1:cds;Parent=Msa0812960-mRNA-1 |
| chr5_3 | CDS | 43410901 | 43410970 | 43410901 | ID=Msa0812960-mRNA-1:cds;Parent=Msa0812960-mRNA-1 |
| chr5_3 | CDS | 43411177 | 43411379 | 43411177 | ID=Msa0812960-mRNA-1:cds;Parent=Msa0812960-mRNA-1 |
| chr5_3 | CDS | 43411466 | 43411555 | 43411466 | ID=Msa0812960-mRNA-1:cds;Parent=Msa0812960-mRNA-1 |
| chr5_3 | CDS | 43412134 | 43412209 | 43412134 | ID=Msa0812960-mRNA-1:cds;Parent=Msa0812960-mRNA-1 |
| chr5_3 | CDS | 43412294 | 43412478 | 43412294 | ID=Msa0812960-mRNA-1:cds;Parent=Msa0812960-mRNA-1 |
| chr5_3 | three_prime_UTR | 43412479 | 43412849 | 43412479 | ID=Msa0812960-mRNA-1:three_prime_utr;Parent=Msa0812960-mRNA-1 |
| Gene Sequence |
| Protein sequence |
