AlfalfaGEDB | Msa0853450

M. sativa cultivar zhongmu-4 / Msa0853450

KEGG: -
GO: GO:0005575 GO:0005622 GO:0005623 GO:0032991 GO:0033588 GO:0044424 GO:0044464
PFAM: PF10483.12

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0853450	XP_003615675.1	96.133	362	14	0	1	362	1	362	0.0	712

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0853450	sp\|F4IQJ2\|ELP5_ARATH	50.000	368	160	6	1	350	1	362	1.15e-111	333

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0853450	G7KE89	96.133	362	14	0	1	362	1	362	0.0	712

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0003890	Msa0853450	0.800304	1.534655e-48	-8.615850e-47
Msa0012080	Msa0853450	0.801344	9.412089e-49	-8.615850e-47
Msa0032090	Msa0853450	0.825280	5.107578e-54	-8.615850e-47
Msa0032430	Msa0853450	0.811806	5.823381e-51	-8.615850e-47
Msa0032580	Msa0853450	0.812758	3.608613e-51	-8.615850e-47
Msa0040690	Msa0853450	0.821494	3.918786e-53	-8.615850e-47
Msa0054440	Msa0853450	0.808716	2.701132e-50	-8.615850e-47
Msa0054480	Msa0853450	0.812851	3.443590e-51	-8.615850e-47
Msa0079380	Msa0853450	0.804993	1.654610e-49	-8.615850e-47
Msa0124060	Msa0853450	0.800157	1.644183e-48	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0853450	MtrunA17_Chr5g0430021	96.133	362	14	0	1	362	1	362	0.0	712

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0853450	AT2G18410.1	50.000	368	160	6	1	350	1	362	1.17e-112	333
Msa0853450	AT2G18410.2	46.918	292	136	5	1	279	1	286	2.89e-79	245

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Find 99 sgRNAs with CRISPR-Local

Find 313 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACGGAGGACTCAGCCCT+AGG	0.592196	5_4:+45282268	Msa0853450:CDS
AAAATATATAATCTCACCTA+GGG	0.558090	5_4:-45282284	None:intergenic
AAAGTTAATTTCTTCAAAAT+TGG	0.118932	5_4:-45282715	None:intergenic
AAATAATTACCATTTGTTAG+AGG	0.388003	5_4:-45277955	None:intergenic
AAATGGACGAGTTAGAGTGA+CGG	0.646988	5_4:+45281249	Msa0853450:CDS
AACAAATGAGCATAAAAGGA+GGG	0.610214	5_4:-45277906	None:intergenic
AACAACGACGATAGCAGTGT+TGG	0.616474	5_4:-45277868	None:intergenic
AACATTGGCTAAACAATATC+GGG	0.485573	5_4:-45282454	None:intergenic
AAGGGTAAGACAAGGAAATC+TGG	0.430423	5_4:+45279345	Msa0853450:CDS
AAGTTAATTTCTTCAAAATT+GGG	0.374003	5_4:-45282714	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TAAGGATCTGCAAATTGATT+CGG	-	chr5_4:45277724-45277743	None:intergenic	30.0%
AACAAATGAGCATAAAAGGA+GGG	-	chr5_4:45277909-45277928	None:intergenic	30.0%
TTATGACATATTCAATCCAC+GGG	-	chr5_4:45278207-45278226	None:intergenic	30.0%
ACTAGCTGATAAATACGAAA+TGG	+	chr5_4:45278227-45278246	Msa0853450:intron	30.0%
AAAAGGAGAATCCATAACTA+AGG	-	chr5_4:45278757-45278776	None:intergenic	30.0%
AGCTTCTATCACAATCAAAA+AGG	-	chr5_4:45278774-45278793	None:intergenic	30.0%
GAAGCTGTTATCTAATTCAA+AGG	+	chr5_4:45278788-45278807	Msa0853450:intron	30.0%
AGCTGTTATCTAATTCAAAG+GGG	+	chr5_4:45278790-45278809	Msa0853450:intron	30.0%
CTAATAAGCTCACGAAAAAA+TGG	-	chr5_4:45278895-45278914	None:intergenic	30.0%
ATATTATTAACGACAAGCTC+GGG	-	chr5_4:45278927-45278946	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_4	gene	45277501	45282740	45277501	ID=Msa0853450;Name=Msa0853450
chr5_4	mRNA	45277501	45282740	45277501	ID=Msa0853450-mRNA-1;Parent=Msa0853450;Name=Msa0853450-mRNA-1;_AED=0.11;_eAED=0.11;_QI=216\|1\|1\|1\|1\|1\|8\|371\|362
chr5_4	exon	45277501	45277967	45277501	ID=Msa0853450-mRNA-1:exon:14255;Parent=Msa0853450-mRNA-1
chr5_4	exon	45279305	45279471	45279305	ID=Msa0853450-mRNA-1:exon:14256;Parent=Msa0853450-mRNA-1
chr5_4	exon	45279589	45279635	45279589	ID=Msa0853450-mRNA-1:exon:14257;Parent=Msa0853450-mRNA-1
chr5_4	exon	45280792	45280861	45280792	ID=Msa0853450-mRNA-1:exon:14258;Parent=Msa0853450-mRNA-1
chr5_4	exon	45281068	45281270	45281068	ID=Msa0853450-mRNA-1:exon:14259;Parent=Msa0853450-mRNA-1
chr5_4	exon	45281357	45281446	45281357	ID=Msa0853450-mRNA-1:exon:14260;Parent=Msa0853450-mRNA-1
chr5_4	exon	45282025	45282100	45282025	ID=Msa0853450-mRNA-1:exon:14261;Parent=Msa0853450-mRNA-1
chr5_4	exon	45282185	45282740	45282185	ID=Msa0853450-mRNA-1:exon:14262;Parent=Msa0853450-mRNA-1
chr5_4	five_prime_UTR	45277501	45277716	45277501	ID=Msa0853450-mRNA-1:five_prime_utr;Parent=Msa0853450-mRNA-1
chr5_4	CDS	45277717	45277967	45277717	ID=Msa0853450-mRNA-1:cds;Parent=Msa0853450-mRNA-1
chr5_4	CDS	45279305	45279471	45279305	ID=Msa0853450-mRNA-1:cds;Parent=Msa0853450-mRNA-1
chr5_4	CDS	45279589	45279635	45279589	ID=Msa0853450-mRNA-1:cds;Parent=Msa0853450-mRNA-1
chr5_4	CDS	45280792	45280861	45280792	ID=Msa0853450-mRNA-1:cds;Parent=Msa0853450-mRNA-1
chr5_4	CDS	45281068	45281270	45281068	ID=Msa0853450-mRNA-1:cds;Parent=Msa0853450-mRNA-1
chr5_4	CDS	45281357	45281446	45281357	ID=Msa0853450-mRNA-1:cds;Parent=Msa0853450-mRNA-1
chr5_4	CDS	45282025	45282100	45282025	ID=Msa0853450-mRNA-1:cds;Parent=Msa0853450-mRNA-1
chr5_4	CDS	45282185	45282369	45282185	ID=Msa0853450-mRNA-1:cds;Parent=Msa0853450-mRNA-1
chr5_4	three_prime_UTR	45282370	45282740	45282370	ID=Msa0853450-mRNA-1:three_prime_utr;Parent=Msa0853450-mRNA-1

Gene Sequence

>Msa0853450

ATGTCCGAATCAATTTGCAGATCCTTACGCGACGGCGCGTTAGAAGGAGAACTATCTCCCACTCTCACTATCAAAGACACTCTCTCTTCACCTTTCGCCTTCAACGTTTTCTCTCACATTCTTCTTCAACTTTCCTCACCAAAATCTCACTCCAACACTGCTATCGTCGTTGTTGCACTTTCTCGAAGTCCCTCCTTTTATGCTCATTTGTTGAAAAACAAAGGAATCGACCTTTCTTCCTCTAACAAATGGATTCATGTTTTGGATTGTTATACAGATCCTCTTGGTTGGAAGGGTAAGACAAGGAAATCTGGAAATGTTACGATTCCTTCTGACCAAATTTCACTTGCTACTACAACTTATAAATCAGTCAAGGATATGGATAAGTTGTTTTTGGCGATTACTGAATTAGGAAGAGGTTTAGTTGGAGAAAATAAAGTCCGCGTTTGTGTTGCCATAGACTCGCTAAGTGAACTGTTGAGACATGCATCTTTGCAGTCAGTCGCAAGCCTTCTAAGCAATCTGCGTAGCCATGATCAAATTTCAAGTATATTTGGATTATTGCATTCTGACCTTCATGAGGAGAGGGCTGCAGCTGCTCTTGAGTACATGTCCTCCATGGTGGCTAGTGTAGAATCAGATCATCATTCTTCCGAGAACTCCTTATTGGAGAAAAACTTTACCCAAGGAAAATTTAATGTCAGACTCAAACGCAGAAATGGACGAGTTAGAGTGACGTGTGAAAAGTTTAAAGTTGAAGCAGGAGGAATCAGCTTTACTTCTGCTTCAGCAGAAGATGGAACAACCGTTGCAGGCTTACTGCCGAAGGTACAATTCAATCTCCAGCTGTCGGAGAAGGAGCAAGTTGATAGGGCAAAGGTTGTGCTTCCTTTTGAACACCAAGGAAATGGTGCACCGATTCAAATTTATGATGGTAGAAGATCCCTTGAAGAGAGCAGCAGTGAGGGGGCACCTATTTCAAAGGGTAAAACGGAGGACTCAGCCCTAGGTGAGATTATATATTTTCGTGATTCAGATGATGAGATGCCAGATTCTGATGAAGACCCAGATGATGATTTAGATATATGA

Protein sequence

>Msa0853450

MSESICRSLRDGALEGELSPTLTIKDTLSSPFAFNVFSHILLQLSSPKSHSNTAIVVVALSRSPSFYAHLLKNKGIDLSSSNKWIHVLDCYTDPLGWKGKTRKSGNVTIPSDQISLATTTYKSVKDMDKLFLAITELGRGLVGENKVRVCVAIDSLSELLRHASLQSVASLLSNLRSHDQISSIFGLLHSDLHEERAAAALEYMSSMVASVESDHHSSENSLLEKNFTQGKFNVRLKRRNGRVRVTCEKFKVEAGGISFTSASAEDGTTVAGLLPKVQFNLQLSEKEQVDRAKVVLPFEHQGNGAPIQIYDGRRSLEESSSEGAPISKGKTEDSALGEIIYFRDSDDEMPDSDEDPDDDLDI*