Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0853450 | XP_003615675.1 | 96.133 | 362 | 14 | 0 | 1 | 362 | 1 | 362 | 0.0 | 712 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0853450 | sp|F4IQJ2|ELP5_ARATH | 50.000 | 368 | 160 | 6 | 1 | 350 | 1 | 362 | 1.15e-111 | 333 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0853450 | G7KE89 | 96.133 | 362 | 14 | 0 | 1 | 362 | 1 | 362 | 0.0 | 712 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003890 | Msa0853450 | 0.800304 | 1.534655e-48 | -8.615850e-47 |
| Msa0012080 | Msa0853450 | 0.801344 | 9.412089e-49 | -8.615850e-47 |
| Msa0032090 | Msa0853450 | 0.825280 | 5.107578e-54 | -8.615850e-47 |
| Msa0032430 | Msa0853450 | 0.811806 | 5.823381e-51 | -8.615850e-47 |
| Msa0032580 | Msa0853450 | 0.812758 | 3.608613e-51 | -8.615850e-47 |
| Msa0040690 | Msa0853450 | 0.821494 | 3.918786e-53 | -8.615850e-47 |
| Msa0054440 | Msa0853450 | 0.808716 | 2.701132e-50 | -8.615850e-47 |
| Msa0054480 | Msa0853450 | 0.812851 | 3.443590e-51 | -8.615850e-47 |
| Msa0079380 | Msa0853450 | 0.804993 | 1.654610e-49 | -8.615850e-47 |
| Msa0610430 | Msa0853450 | 0.802366 | 5.805128e-49 | -8.615850e-47 |
| Msa0621490 | Msa0853450 | 0.821333 | 4.269462e-53 | -8.615850e-47 |
| Msa0623790 | Msa0853450 | 0.833355 | 5.593703e-56 | -8.615850e-47 |
| Msa0625720 | Msa0853450 | 0.805734 | 1.156830e-49 | -8.615850e-47 |
| Msa0643560 | Msa0853450 | 0.852080 | 5.835041e-61 | -8.615850e-47 |
| Msa0663390 | Msa0853450 | 0.802760 | 4.814701e-49 | -8.615850e-47 |
| Msa0689260 | Msa0853450 | 0.831007 | 2.129819e-55 | -8.615850e-47 |
| Msa0692950 | Msa0853450 | 0.800045 | 1.732643e-48 | -8.615850e-47 |
| Msa0711780 | Msa0853450 | 0.817940 | 2.540346e-52 | -8.615850e-47 |
| Msa0715700 | Msa0853450 | 0.841589 | 4.335678e-58 | -8.615850e-47 |
| Msa0788850 | Msa0853450 | 0.813534 | 2.438517e-51 | -8.615850e-47 |
| Msa0793800 | Msa0853450 | 0.827362 | 1.631458e-54 | -8.615850e-47 |
| Msa0794670 | Msa0853450 | 0.807292 | 5.428985e-50 | -8.615850e-47 |
| Msa0808080 | Msa0853450 | 0.803327 | 3.675525e-49 | -8.615850e-47 |
| Msa0812960 | Msa0853450 | 0.829268 | 5.660378e-55 | -8.615850e-47 |
| Msa0831530 | Msa0853450 | 0.810842 | 9.424913e-51 | -8.615850e-47 |
| Msa0124060 | Msa0853450 | 0.800157 | 1.644183e-48 | -8.615850e-47 |
| Msa0136070 | Msa0853450 | 0.807693 | 4.463058e-50 | -8.615850e-47 |
| Msa0145440 | Msa0853450 | 0.810006 | 1.428513e-50 | -8.615850e-47 |
| Msa0150820 | Msa0853450 | 0.813360 | 2.662711e-51 | -8.615850e-47 |
| Msa0160550 | Msa0853450 | 0.821670 | 3.569191e-53 | -8.615850e-47 |
| Msa0168230 | Msa0853450 | 0.806304 | 8.779078e-50 | -8.615850e-47 |
| Msa0168500 | Msa0853450 | 0.803222 | 3.864366e-49 | -8.615850e-47 |
| Msa0172070 | Msa0853450 | 0.816118 | 6.522193e-52 | -8.615850e-47 |
| Msa0172970 | Msa0853450 | 0.809459 | 1.873061e-50 | -8.615850e-47 |
| Msa0187120 | Msa0853450 | 0.833454 | 5.285449e-56 | -8.615850e-47 |
| Msa0402790 | Msa0853450 | 0.801622 | 8.253530e-49 | -8.615850e-47 |
| Msa0260680 | Msa0853450 | 0.821198 | 4.585945e-53 | -8.615850e-47 |
| Msa0279220 | Msa0853450 | 0.801013 | 1.100203e-48 | -8.615850e-47 |
| Msa0279700 | Msa0853450 | 0.849662 | 2.801176e-60 | -8.615850e-47 |
| Msa0299870 | Msa0853450 | 0.805501 | 1.294866e-49 | -8.615850e-47 |
| Msa0309770 | Msa0853450 | 0.805053 | 1.607381e-49 | -8.615850e-47 |
| Msa0337620 | Msa0853450 | 0.813952 | 1.972627e-51 | -8.615850e-47 |
| Msa0511310 | Msa0853450 | 0.808983 | 2.368417e-50 | -8.615850e-47 |
| Msa0529890 | Msa0853450 | 0.808777 | 2.621927e-50 | -8.615850e-47 |
| Msa0585560 | Msa0853450 | 0.804123 | 2.512334e-49 | -8.615850e-47 |
| Msa0853450 | Msa0856910 | 0.813502 | 2.477845e-51 | -8.615850e-47 |
| Msa0853450 | Msa0871270 | 0.806661 | 7.381864e-50 | -8.615850e-47 |
| Msa0853450 | Msa0938220 | 0.811346 | 7.329999e-51 | -8.615850e-47 |
| Msa0853450 | Msa0959360 | 0.810655 | 1.034567e-50 | -8.615850e-47 |
| Msa0853450 | Msa0974070 | 0.815725 | 7.977659e-52 | -8.615850e-47 |
| Msa0853450 | Msa0989540 | 0.813763 | 2.171040e-51 | -8.615850e-47 |
| Msa0853450 | Msa0999970 | 0.813144 | 2.969197e-51 | -8.615850e-47 |
| Msa0853450 | Msa1003620 | 0.801763 | 7.722337e-49 | -8.615850e-47 |
| Msa0853450 | Msa1009820 | 0.803617 | 3.201013e-49 | -8.615850e-47 |
| Msa0853450 | Msa1051200 | 0.823639 | 1.243265e-53 | -8.615850e-47 |
| Msa0853450 | Msa1137700 | 0.818767 | 1.650720e-52 | -8.615850e-47 |
| Msa0853450 | Msa1162270 | 0.824152 | 9.422776e-54 | -8.615850e-47 |
| Msa0853450 | Msa1225700 | 0.819250 | 1.281479e-52 | -8.615850e-47 |
| Msa0853450 | Msa1287460 | 0.814137 | 1.795860e-51 | -8.615850e-47 |
| Msa0853450 | Msa1358250 | 0.830623 | 2.645663e-55 | -8.615850e-47 |
| Msa0853450 | Msa1386780 | 0.807726 | 4.390815e-50 | -8.615850e-47 |
| Msa0853450 | Msa1392780 | 0.831718 | 1.423718e-55 | -8.615850e-47 |
| Msa0853450 | Msa1394290 | 0.804066 | 2.581523e-49 | -8.615850e-47 |
| Msa0853450 | Msa1423350 | 0.810314 | 1.226047e-50 | -8.615850e-47 |
| Msa0853450 | Msa1457920 | 0.815452 | 9.179555e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0853450 | MtrunA17_Chr5g0430021 | 96.133 | 362 | 14 | 0 | 1 | 362 | 1 | 362 | 0.0 | 712 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0853450 | AT2G18410.1 | 50.000 | 368 | 160 | 6 | 1 | 350 | 1 | 362 | 1.17e-112 | 333 |
| Msa0853450 | AT2G18410.2 | 46.918 | 292 | 136 | 5 | 1 | 279 | 1 | 286 | 2.89e-79 | 245 |
Find 99 sgRNAs with CRISPR-Local
Find 313 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGCTCTGCCGGCTGGGTTT+TGG | 0.112722 | 5_4:-45277544 | None:intergenic |
| AAAGTTAATTTCTTCAAAAT+TGG | 0.118932 | 5_4:-45282715 | None:intergenic |
| GATCAAATTTCAAGTATATT+TGG | 0.165288 | 5_4:+45281067 | Msa0853450:intron |
| TTCTTCCGAGAACTCCTTAT+TGG | 0.193034 | 5_4:+45281180 | Msa0853450:CDS |
| TTTCAACAAATGAGCATAAA+AGG | 0.205745 | 5_4:-45277910 | None:intergenic |
| GATTTGACTCACGGTGAAAT+TGG | 0.234369 | 5_4:+45282637 | Msa0853450:three_prime_UTR |
| TGAGTCAAATCGCTCAAAAT+AGG | 0.239236 | 5_4:-45282508 | None:intergenic |
| TAGAGTATGTTAGTTAGATA+TGG | 0.316832 | 5_4:-45277582 | None:intergenic |
| CCTCACTGCTGCTCTCTTCA+AGG | 0.319817 | 5_4:-45282225 | None:intergenic |
| ACGTTGCAGGATTCATGTTT+TGG | 0.323737 | 5_4:+45279296 | Msa0853450:intron |
| CATATACTTGCAGGTTTAGT+TGG | 0.338834 | 5_4:+45279576 | Msa0853450:intron |
| CAACATTGGCTAAACAATAT+CGG | 0.340724 | 5_4:-45282455 | None:intergenic |
| CATATATCTAAATCATCATC+TGG | 0.349360 | 5_4:-45282346 | None:intergenic |
| GGCTACGCAGATTGCTTAGA+AGG | 0.358220 | 5_4:-45280836 | None:intergenic |
| TTGTAGTAGCAAGTGAAATT+TGG | 0.362698 | 5_4:-45279389 | None:intergenic |
| TTATAAATCAGTCAAGGATA+TGG | 0.367636 | 5_4:+45279413 | Msa0853450:CDS |
| CAATGGTATTACCGAGTCTA+TGG | 0.368131 | 5_4:-45279625 | None:intergenic |
| GCAGTGTTGGAGTGAGATTT+TGG | 0.370882 | 5_4:-45277855 | None:intergenic |
| AAGTTAATTTCTTCAAAATT+GGG | 0.374003 | 5_4:-45282714 | None:intergenic |
| GAAGATGGAACAACCGTTGC+AGG | 0.375116 | 5_4:+45281411 | Msa0853450:CDS |
| AGTGACACTGCTCTGCCGGC+TGG | 0.385086 | 5_4:-45277551 | None:intergenic |
| AAATAATTACCATTTGTTAG+AGG | 0.388003 | 5_4:-45277955 | None:intergenic |
| ATTTCTAGGTGACTTAGATT+AGG | 0.399745 | 5_4:+45282395 | Msa0853450:three_prime_UTR |
| CGGAGAAGGAGCAAGTTGAT+AGG | 0.401470 | 5_4:+45282047 | Msa0853450:CDS |
| GTCAGACTCAAACGCAGAAA+TGG | 0.412350 | 5_4:+45281232 | Msa0853450:CDS |
| GAGTCAAATCGCTCAAAATA+GGG | 0.418007 | 5_4:-45282507 | None:intergenic |
| TCTGGGTCTTCATCAGAATC+TGG | 0.427379 | 5_4:-45282328 | None:intergenic |
| AAGGGTAAGACAAGGAAATC+TGG | 0.430423 | 5_4:+45279345 | Msa0853450:CDS |
| ATTTGACTCACGGTGAAATT+GGG | 0.433464 | 5_4:+45282638 | Msa0853450:three_prime_UTR |
| ACCATTTGTTAGAGGAAGAA+AGG | 0.434158 | 5_4:-45277947 | None:intergenic |
| GAAAAGTTTAAAGTTGAAGC+AGG | 0.437344 | 5_4:+45281360 | Msa0853450:CDS |
| ACTTCTGCTTCAGCAGAAGA+TGG | 0.442521 | 5_4:+45281396 | Msa0853450:CDS |
| TTACGCGACGGCGCGTTAGA+AGG | 0.442752 | 5_4:+45277741 | Msa0853450:CDS |
| ACCTATTTCAAAGGGTAAAA+CGG | 0.446678 | 5_4:+45282252 | Msa0853450:CDS |
| TTCTAACGCGCCGTCGCGTA+AGG | 0.450290 | 5_4:-45277739 | None:intergenic |
| ATCATACCTTGGTGTTCAAA+AGG | 0.453627 | 5_4:-45282085 | None:intergenic |
| GATTGTTATACAGATCCTCT+TGG | 0.456861 | 5_4:+45279318 | Msa0853450:CDS |
| GATTTGACTCATGGTGAAAT+CGG | 0.458998 | 5_4:+45282520 | Msa0853450:three_prime_UTR |
| TTTCTCCAATAAGGAGTTCT+CGG | 0.461886 | 5_4:-45281185 | None:intergenic |
| ACCTTTCTTCCTCTAACAAA+TGG | 0.463121 | 5_4:+45277946 | Msa0853450:CDS |
| TGAGTCAAATCACTCAAAAT+CGG | 0.470213 | 5_4:-45282625 | None:intergenic |
| AGTGTCTTTGATAGTGAGAG+TGG | 0.476958 | 5_4:-45277775 | None:intergenic |
| CTACCATCATAAATTTGAAT+CGG | 0.477609 | 5_4:-45282196 | None:intergenic |
| CTTGAAGAGAGCAGCAGTGA+GGG | 0.479698 | 5_4:+45282226 | Msa0853450:CDS |
| CTTGCTCCTTCTCCGACAGC+TGG | 0.481450 | 5_4:-45282039 | None:intergenic |
| AACATTGGCTAAACAATATC+GGG | 0.485573 | 5_4:-45282454 | None:intergenic |
| CTCACTGCTGCTCTCTTCAA+GGG | 0.486177 | 5_4:-45282224 | None:intergenic |
| GTTTGAAATAACAGTGATAG+AGG | 0.495126 | 5_4:-45277619 | None:intergenic |
| GTGACACTGCTCTGCCGGCT+GGG | 0.496872 | 5_4:-45277550 | None:intergenic |
| GCACCGATTCAAATTTATGA+TGG | 0.500504 | 5_4:+45282193 | Msa0853450:CDS |
| TAAGGATCTGCAAATTGATT+CGG | 0.502422 | 5_4:-45277721 | None:intergenic |
| TACAGATCCTCTTGGTTGGA+AGG | 0.505892 | 5_4:+45279326 | Msa0853450:CDS |
| TTGAAGAGAGCAGCAGTGAG+GGG | 0.511953 | 5_4:+45282227 | Msa0853450:CDS |
| GCGATTACTGAATTAGGAAG+AGG | 0.516301 | 5_4:+45279450 | Msa0853450:CDS |
| GTAGAGTGACACTGCTCTGC+CGG | 0.516846 | 5_4:-45277555 | None:intergenic |
| CAATCTCCAGCTGTCGGAGA+AGG | 0.518414 | 5_4:+45282033 | Msa0853450:CDS |
| TTCTGACCTTCATGAGGAGA+GGG | 0.523680 | 5_4:+45281099 | Msa0853450:CDS |
| GTTATACAGATCCTCTTGGT+TGG | 0.526377 | 5_4:+45279322 | Msa0853450:CDS |
| GCAAGTGAAATTTGGTCAGA+AGG | 0.527173 | 5_4:-45279381 | None:intergenic |
| ATGAGAGAGAGTGTAAGAGA+AGG | 0.533838 | 5_4:-45277658 | None:intergenic |
| CAAATTGATTCGGACATCGT+TGG | 0.540672 | 5_4:-45277711 | None:intergenic |
| AATGTGAGAGAAAACGTTGA+AGG | 0.547299 | 5_4:-45277814 | None:intergenic |
| CTGCAGCCCTCTCCTCATGA+AGG | 0.549659 | 5_4:-45281105 | None:intergenic |
| GAAAATATATAATCTCACCT+AGG | 0.551369 | 5_4:-45282285 | None:intergenic |
| AAAATATATAATCTCACCTA+GGG | 0.558090 | 5_4:-45282284 | None:intergenic |
| ACAGATCCTCTTGGTTGGAA+GGG | 0.558800 | 5_4:+45279327 | Msa0853450:CDS |
| TCACTCAAATTGCTCAACAT+CGG | 0.561989 | 5_4:-45282551 | None:intergenic |
| CTTTCCGCCCAAAACCCAGC+CGG | 0.567637 | 5_4:+45277536 | Msa0853450:five_prime_UTR |
| GGAGAAGGAGCAAGTTGATA+GGG | 0.569101 | 5_4:+45282048 | Msa0853450:CDS |
| GTGTCTTTGATAGTGAGAGT+GGG | 0.577637 | 5_4:-45277774 | None:intergenic |
| TCTTGAGTACATGTCCTCCA+TGG | 0.578101 | 5_4:+45281132 | Msa0853450:CDS |
| TGAAGAGAGCAGCAGTGAGG+GGG | 0.579393 | 5_4:+45282228 | Msa0853450:CDS |
| CTAAGCAATCTGCGTAGCCA+TGG | 0.584264 | 5_4:+45280840 | Msa0853450:CDS |
| CGTTTGTGTTGCCATAGACT+CGG | 0.590273 | 5_4:+45279614 | Msa0853450:CDS |
| AAGTTTAAAGTTGAAGCAGG+AGG | 0.591459 | 5_4:+45281363 | Msa0853450:CDS |
| AAAACGGAGGACTCAGCCCT+AGG | 0.592196 | 5_4:+45282268 | Msa0853450:CDS |
| ATTCTGACCTTCATGAGGAG+AGG | 0.594867 | 5_4:+45281098 | Msa0853450:CDS |
| ATATATCTAAATCATCATCT+GGG | 0.597804 | 5_4:-45282345 | None:intergenic |
| GTCTTACCCTTCCAACCAAG+AGG | 0.598767 | 5_4:-45279333 | None:intergenic |
| GGAGCAAGTTGATAGGGCAA+AGG | 0.602173 | 5_4:+45282054 | Msa0853450:CDS |
| TACAACTTATAAATCAGTCA+AGG | 0.606201 | 5_4:+45279407 | Msa0853450:CDS |
| AACAAATGAGCATAAAAGGA+GGG | 0.610214 | 5_4:-45277906 | None:intergenic |
| ACAATTCAATCTCCAGCTGT+CGG | 0.612927 | 5_4:+45282027 | Msa0853450:CDS |
| CAACAAATGAGCATAAAAGG+AGG | 0.613225 | 5_4:-45277907 | None:intergenic |
| ATTGCATTCTGACCTTCATG+AGG | 0.614181 | 5_4:+45281093 | Msa0853450:CDS |
| GAGAAAACGTTGAAGGCGAA+AGG | 0.615791 | 5_4:-45277807 | None:intergenic |
| AACAACGACGATAGCAGTGT+TGG | 0.616474 | 5_4:-45277868 | None:intergenic |
| TGATTCTACACTAGCCACCA+TGG | 0.622429 | 5_4:-45281149 | None:intergenic |
| TGAGTACATGTCCTCCATGG+TGG | 0.628826 | 5_4:+45281135 | Msa0853450:CDS |
| CGTTGCAGGCTTACTGCCGA+AGG | 0.634937 | 5_4:+45281425 | Msa0853450:CDS |
| CTTCGGCAGTAAGCCTGCAA+CGG | 0.639094 | 5_4:-45281424 | None:intergenic |
| ATTTGCAGATCCTTACGCGA+CGG | 0.643811 | 5_4:+45277729 | Msa0853450:CDS |
| AAATGGACGAGTTAGAGTGA+CGG | 0.646988 | 5_4:+45281249 | Msa0853450:CDS |
| CCTTGAAGAGAGCAGCAGTG+AGG | 0.653081 | 5_4:+45282225 | Msa0853450:CDS |
| GGTGAAATTGGGTAAAATCG+AGG | 0.676074 | 5_4:+45282649 | Msa0853450:three_prime_UTR |
| TTGGTTGGAAGGGTAAGACA+AGG | 0.697722 | 5_4:+45279337 | Msa0853450:CDS |
| AGTCTATGGCAACACAAACG+CGG | 0.706339 | 5_4:-45279611 | None:intergenic |
| TATTTCAAAGGGTAAAACGG+AGG | 0.732486 | 5_4:+45282255 | Msa0853450:CDS |
| TTCTACACTAGCCACCATGG+AGG | 0.784181 | 5_4:-45281146 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATTTTTGAAAAGAATTTT+AGG | + | chr5_4:45279056-45279075 | Msa0853450:intron | 10.0% |
| !!! | TATTTTTGAAAAGAATTTTA+GGG | + | chr5_4:45279057-45279076 | Msa0853450:intron | 10.0% |
| !! | TAAAGTATAAAAGAGTTTAA+TGG | - | chr5_4:45279238-45279257 | None:intergenic | 15.0% |
| !!! | TTTTATAAATTTTGCGAAAA+AGG | + | chr5_4:45280052-45280071 | Msa0853450:intron | 15.0% |
| !! | TTCTATAATATCTTTGTAAT+TGG | + | chr5_4:45280279-45280298 | Msa0853450:intron | 15.0% |
| !! | ATATCTTTATAATCACTTAA+TGG | - | chr5_4:45280487-45280506 | None:intergenic | 15.0% |
| !! | ATACTTAATTGGAATATTAA+TGG | - | chr5_4:45280693-45280712 | None:intergenic | 15.0% |
| !!! | AAATTTAGGATTTTAAATTG+TGG | + | chr5_4:45281606-45281625 | Msa0853450:intron | 15.0% |
| !!! | AATTTAGGATTTTAAATTGT+GGG | + | chr5_4:45281607-45281626 | Msa0853450:intron | 15.0% |
| !!! | TGAAACTTTATGTTTTTAAT+AGG | + | chr5_4:45282003-45282022 | Msa0853450:intron | 15.0% |
| !! | AAGTTAATTTCTTCAAAATT+GGG | - | chr5_4:45282717-45282736 | None:intergenic | 15.0% |
| !! | AAAGTTAATTTCTTCAAAAT+TGG | - | chr5_4:45282718-45282737 | None:intergenic | 15.0% |
| !!! | AAATAATTACCATTTGTTAG+AGG | - | chr5_4:45277958-45277977 | None:intergenic | 20.0% |
| !! | TAACTTCTTCTTTATATTTC+TGG | + | chr5_4:45277986-45278005 | Msa0853450:intron | 20.0% |
| !!! | TTTCATTTTTAATGTGAATC+TGG | + | chr5_4:45278043-45278062 | Msa0853450:intron | 20.0% |
| !! | TTTACTCTTATCATCTTAAT+CGG | - | chr5_4:45278288-45278307 | None:intergenic | 20.0% |
| !! | AAGAAAAATTGTTACCAAAT+AGG | + | chr5_4:45278669-45278688 | Msa0853450:intron | 20.0% |
| !!! | TATAAGATTGAATGTGTTTT+TGG | + | chr5_4:45278972-45278991 | Msa0853450:intron | 20.0% |
| !!! | ACAAAATAATGGATTCATAT+TGG | - | chr5_4:45279104-45279123 | None:intergenic | 20.0% |
| !! | TGTAAAAGAAAGCAAAAATA+TGG | - | chr5_4:45279538-45279557 | None:intergenic | 20.0% |
| !! | TGATTATGAAAATTGTAAGA+AGG | + | chr5_4:45279770-45279789 | Msa0853450:intron | 20.0% |
| !! | GATTATGAAAATTGTAAGAA+GGG | + | chr5_4:45279771-45279790 | Msa0853450:intron | 20.0% |
| !! | ATAAAAAGATTACTGTATCA+AGG | - | chr5_4:45279834-45279853 | None:intergenic | 20.0% |
| !!! | AAATACTTTTTTATGATGAG+AGG | - | chr5_4:45279934-45279953 | None:intergenic | 20.0% |
| !!! | CATCATAAAAAAGTATTTTG+TGG | + | chr5_4:45279936-45279955 | Msa0853450:intron | 20.0% |
| !! | ACAAAGATATTATAGAACTT+CGG | - | chr5_4:45280276-45280295 | None:intergenic | 20.0% |
| !! | ACTATAGAATGTAAATCATT+TGG | - | chr5_4:45280374-45280393 | None:intergenic | 20.0% |
| !! | AATGATTTACATTCTATAGT+TGG | + | chr5_4:45280374-45280393 | Msa0853450:intron | 20.0% |
| !! | ATCTTGTTACAATTTAATGA+TGG | + | chr5_4:45280505-45280524 | Msa0853450:intron | 20.0% |
| !!! | TCTTTTTCTTTTTTGACAAA+GGG | - | chr5_4:45280592-45280611 | None:intergenic | 20.0% |
| !!! | TTCTTTTTCTTTTTTGACAA+AGG | - | chr5_4:45280593-45280612 | None:intergenic | 20.0% |
| !! | ATATTCCAATTAAGTATGTT+CGG | + | chr5_4:45280696-45280715 | Msa0853450:intron | 20.0% |
| !!! | ATTTGCTCTTATTTTGAATA+CGG | + | chr5_4:45280864-45280883 | Msa0853450:intron | 20.0% |
| !! | AGTAGATAATATTTATGTCA+CGG | + | chr5_4:45280989-45281008 | Msa0853450:intron | 20.0% |
| !!! | GATCAAATTTCAAGTATATT+TGG | + | chr5_4:45281067-45281086 | Msa0853450:intron | 20.0% |
| !! | AACAAAAATAAGATCTCTTT+AGG | - | chr5_4:45281465-45281484 | None:intergenic | 20.0% |
| !!! | ATTCAAAGGTATTTTTTCTA+AGG | + | chr5_4:45281514-45281533 | Msa0853450:intron | 20.0% |
| !!! | TGTTATATGTAATTTGCAAT+TGG | + | chr5_4:45281745-45281764 | Msa0853450:intron | 20.0% |
| !! | TTCAACCTATTATTTATTTG+CGG | - | chr5_4:45281987-45282006 | None:intergenic | 20.0% |
| !! | AAAATATATAATCTCACCTA+GGG | - | chr5_4:45282287-45282306 | None:intergenic | 20.0% |
| !! | ATATATCTAAATCATCATCT+GGG | - | chr5_4:45282348-45282367 | None:intergenic | 20.0% |
| ! | TAGAGTATGTTAGTTAGATA+TGG | - | chr5_4:45277585-45277604 | None:intergenic | 25.0% |
| !!! | GTTGAGTTTGATTTTGATTT+GGG | - | chr5_4:45277689-45277708 | None:intergenic | 25.0% |
| !!! | AGTTGAGTTTGATTTTGATT+TGG | - | chr5_4:45277690-45277709 | None:intergenic | 25.0% |
| ! | TTTCAACAAATGAGCATAAA+AGG | - | chr5_4:45277913-45277932 | None:intergenic | 25.0% |
| ! | CAAATTGAATTTGTAGTGTT+TGG | + | chr5_4:45278158-45278177 | Msa0853450:intron | 25.0% |
| ! | TTTATGACATATTCAATCCA+CGG | - | chr5_4:45278208-45278227 | None:intergenic | 25.0% |
| ! | TATATAAGCTCAAATGTTAC+TGG | + | chr5_4:45278329-45278348 | Msa0853450:intron | 25.0% |
| ! | AGGACTAAAAAATAACTGTT+CGG | - | chr5_4:45278399-45278418 | None:intergenic | 25.0% |
| !! | ACAATTAGCTATTTGTTACA+AGG | - | chr5_4:45278426-45278445 | None:intergenic | 25.0% |
| ! | AATGAACCTATAACATATAG+CGG | + | chr5_4:45278499-45278518 | Msa0853450:intron | 25.0% |
| ! | AAGCTGTTATCTAATTCAAA+GGG | + | chr5_4:45278789-45278808 | Msa0853450:intron | 25.0% |
| !!! | CTTTTATTTCTTTTGGTTGT+TGG | + | chr5_4:45278828-45278847 | Msa0853450:intron | 25.0% |
| ! | AAAATGGAACCAATACAAAA+GGG | - | chr5_4:45278879-45278898 | None:intergenic | 25.0% |
| ! | AAAAATGGAACCAATACAAA+AGG | - | chr5_4:45278880-45278899 | None:intergenic | 25.0% |
| ! | AATATTATTAACGACAAGCT+CGG | - | chr5_4:45278928-45278947 | None:intergenic | 25.0% |
| ! | CAAATAACCATTTGAAAAGT+GGG | - | chr5_4:45279134-45279153 | None:intergenic | 25.0% |
| ! | TACAACTTATAAATCAGTCA+AGG | + | chr5_4:45279407-45279426 | Msa0853450:CDS | 25.0% |
| ! | TTATAAATCAGTCAAGGATA+TGG | + | chr5_4:45279413-45279432 | Msa0853450:CDS | 25.0% |
| !! | TTTTCAATTCATATACTTGC+AGG | + | chr5_4:45279567-45279586 | Msa0853450:intron | 25.0% |
| !!! | ATTCTAGTCAATGTTTTTTG+TGG | + | chr5_4:45279692-45279711 | Msa0853450:intron | 25.0% |
| ! | TTTGCAATTAATATGGTGAT+TGG | + | chr5_4:45279716-45279735 | Msa0853450:intron | 25.0% |
| !!! | CAAGGTTATTTTATTTAGCT+TGG | - | chr5_4:45279816-45279835 | None:intergenic | 25.0% |
| !! | TATAAATTTTGCGAAAAAGG+TGG | + | chr5_4:45280055-45280074 | Msa0853450:intron | 25.0% |
| !! | TTGTCATTTGTGATAGAATT+GGG | + | chr5_4:45280231-45280250 | Msa0853450:intron | 25.0% |
| ! | AAAGATATTATAGAACTTCG+GGG | - | chr5_4:45280274-45280293 | None:intergenic | 25.0% |
| ! | CAAAGATATTATAGAACTTC+GGG | - | chr5_4:45280275-45280294 | None:intergenic | 25.0% |
| !! | TTACAATTTAATGATGGAAC+TGG | + | chr5_4:45280511-45280530 | Msa0853450:intron | 25.0% |
| !! | TTCTAGTGTAAAAGGAATTT+TGG | - | chr5_4:45280635-45280654 | None:intergenic | 25.0% |
| ! | AATTGTAAATCTTCTTTCTC+AGG | - | chr5_4:45280660-45280679 | None:intergenic | 25.0% |
| !!! | TAATCCTAATGGATTCTTTT+TGG | + | chr5_4:45280759-45280778 | Msa0853450:intron | 25.0% |
| ! | ATATCCAAAAAGAATCCATT+AGG | - | chr5_4:45280766-45280785 | None:intergenic | 25.0% |
| ! | GTAGATAATATTTATGTCAC+GGG | + | chr5_4:45280990-45281009 | Msa0853450:intron | 25.0% |
| !! | TCTGACATTAAATTTTCCTT+GGG | - | chr5_4:45281218-45281237 | None:intergenic | 25.0% |
| ! | TTCTTTATCGTGAACTTATT+TGG | + | chr5_4:45281283-45281302 | Msa0853450:intron | 25.0% |
| ! | GAAATGAAAATTTAGATGCT+AGG | + | chr5_4:45281536-45281555 | Msa0853450:intron | 25.0% |
| !! | TTTCAATCAAAGCATCAAAT+AGG | - | chr5_4:45281566-45281585 | None:intergenic | 25.0% |
| ! | GTGCTTCTAACATTAAATTT+AGG | + | chr5_4:45281592-45281611 | Msa0853450:intron | 25.0% |
| ! | ATTGACCGCAAATAAATAAT+AGG | + | chr5_4:45281979-45281998 | Msa0853450:intron | 25.0% |
| ! | TACAAATCTATATCATACCT+TGG | - | chr5_4:45282099-45282118 | None:intergenic | 25.0% |
| ! | CTACCATCATAAATTTGAAT+CGG | - | chr5_4:45282199-45282218 | None:intergenic | 25.0% |
| ! | GAAAATATATAATCTCACCT+AGG | - | chr5_4:45282288-45282307 | None:intergenic | 25.0% |
| ! | CATATATCTAAATCATCATC+TGG | - | chr5_4:45282349-45282368 | None:intergenic | 25.0% |
| !! | TTAGTGTTTTCTGTATTTCT+AGG | + | chr5_4:45282381-45282400 | Msa0853450:three_prime_UTR | 25.0% |
| ! | GTTTGAAATAACAGTGATAG+AGG | - | chr5_4:45277622-45277641 | None:intergenic | 30.0% |
| TAAGGATCTGCAAATTGATT+CGG | - | chr5_4:45277724-45277743 | None:intergenic | 30.0% | |
| AACAAATGAGCATAAAAGGA+GGG | - | chr5_4:45277909-45277928 | None:intergenic | 30.0% | |
| ! | GCTCATTTGTTGAAAAACAA+AGG | + | chr5_4:45277918-45277937 | Msa0853450:CDS | 30.0% |
| TTATGACATATTCAATCCAC+GGG | - | chr5_4:45278207-45278226 | None:intergenic | 30.0% | |
| ACTAGCTGATAAATACGAAA+TGG | + | chr5_4:45278227-45278246 | Msa0853450:intron | 30.0% | |
| ! | GTTACCAAATAGGTCTATTT+TGG | + | chr5_4:45278679-45278698 | Msa0853450:intron | 30.0% |
| AAAAGGAGAATCCATAACTA+AGG | - | chr5_4:45278757-45278776 | None:intergenic | 30.0% | |
| AGCTTCTATCACAATCAAAA+AGG | - | chr5_4:45278774-45278793 | None:intergenic | 30.0% | |
| GAAGCTGTTATCTAATTCAA+AGG | + | chr5_4:45278788-45278807 | Msa0853450:intron | 30.0% | |
| AGCTGTTATCTAATTCAAAG+GGG | + | chr5_4:45278790-45278809 | Msa0853450:intron | 30.0% | |
| !!! | CTCGCTACTTTTATTTCTTT+TGG | + | chr5_4:45278821-45278840 | Msa0853450:intron | 30.0% |
| CTAATAAGCTCACGAAAAAA+TGG | - | chr5_4:45278895-45278914 | None:intergenic | 30.0% | |
| ATATTATTAACGACAAGCTC+GGG | - | chr5_4:45278927-45278946 | None:intergenic | 30.0% | |
| TGGGTAACATGACAAAATAA+TGG | - | chr5_4:45279115-45279134 | None:intergenic | 30.0% | |
| CCAAATAACCATTTGAAAAG+TGG | - | chr5_4:45279135-45279154 | None:intergenic | 30.0% | |
| !! | CCACTTTTCAAATGGTTATT+TGG | + | chr5_4:45279132-45279151 | Msa0853450:intron | 30.0% |
| TTAATGGTTGTATACTGCTA+GGG | - | chr5_4:45279222-45279241 | None:intergenic | 30.0% | |
| TTTAATGGTTGTATACTGCT+AGG | - | chr5_4:45279223-45279242 | None:intergenic | 30.0% | |
| TTGTAGTAGCAAGTGAAATT+TGG | - | chr5_4:45279392-45279411 | None:intergenic | 30.0% | |
| !! | GGATATGGATAAGTTGTTTT+TGG | + | chr5_4:45279428-45279447 | Msa0853450:CDS | 30.0% |
| !! | TTTTTGGCGATTACTGAATT+AGG | + | chr5_4:45279444-45279463 | Msa0853450:CDS | 30.0% |
| !! | AAGAGGTATTGATTGCTATT+AGG | + | chr5_4:45279467-45279486 | Msa0853450:intron | 30.0% |
| ! | TCAAAGCTATTTCAAGTCAA+TGG | - | chr5_4:45279645-45279664 | None:intergenic | 30.0% |
| TGAAGTTGAATATACTCTGT+TGG | + | chr5_4:45279666-45279685 | Msa0853450:intron | 30.0% | |
| ! | TTGTGGCTTTGCAATTAATA+TGG | + | chr5_4:45279709-45279728 | Msa0853450:intron | 30.0% |
| ! | AGGTCTATTATTCAAGTTTG+TGG | - | chr5_4:45279914-45279933 | None:intergenic | 30.0% |
| AGACTGTATGTTTACATTGT+AGG | + | chr5_4:45279959-45279978 | Msa0853450:intron | 30.0% | |
| GACTGTATGTTTACATTGTA+GGG | + | chr5_4:45279960-45279979 | Msa0853450:intron | 30.0% | |
| ! | TTACTGGGTTGAAAATGATT+AGG | + | chr5_4:45280164-45280183 | Msa0853450:intron | 30.0% |
| !! | TGAAAATGATTAGGTTGAGT+TGG | + | chr5_4:45280173-45280192 | Msa0853450:intron | 30.0% |
| ! | CTTGTCATTTGTGATAGAAT+TGG | + | chr5_4:45280230-45280249 | Msa0853450:intron | 30.0% |
| ! | TGTCATTTGTGATAGAATTG+GGG | + | chr5_4:45280232-45280251 | Msa0853450:intron | 30.0% |
| AAGATATTATAGAACTTCGG+GGG | - | chr5_4:45280273-45280292 | None:intergenic | 30.0% | |
| !! | TTATTTCTGGGAAGTTTAAG+AGG | - | chr5_4:45280459-45280478 | None:intergenic | 30.0% |
| ! | TTAATGGCTCGTTTATTTCT+GGG | - | chr5_4:45280471-45280490 | None:intergenic | 30.0% |
| AGAAACCGAACATACTTAAT+TGG | - | chr5_4:45280704-45280723 | None:intergenic | 30.0% | |
| GTGTGTGTATATAATCCTAA+TGG | + | chr5_4:45280748-45280767 | Msa0853450:intron | 30.0% | |
| CAAAATAAGAGCAAATACCA+TGG | - | chr5_4:45280860-45280879 | None:intergenic | 30.0% | |
| ATAATATTTATGTCACGGGT+TGG | + | chr5_4:45280994-45281013 | Msa0853450:intron | 30.0% | |
| ! | GGTAAAGTTTTTCTCCAATA+AGG | - | chr5_4:45281197-45281216 | None:intergenic | 30.0% |
| ! | GTCTGACATTAAATTTTCCT+TGG | - | chr5_4:45281219-45281238 | None:intergenic | 30.0% |
| GAATTGCTAATCTTCAAAAC+TGG | + | chr5_4:45281305-45281324 | Msa0853450:intron | 30.0% | |
| ! | GAAAAGTTTAAAGTTGAAGC+AGG | + | chr5_4:45281360-45281379 | Msa0853450:CDS | 30.0% |
| ! | ATATGCGCTCTTTTATAAAG+GGG | - | chr5_4:45281493-45281512 | None:intergenic | 30.0% |
| ! | GATATGCGCTCTTTTATAAA+GGG | - | chr5_4:45281494-45281513 | None:intergenic | 30.0% |
| ! | TGATATGCGCTCTTTTATAA+AGG | - | chr5_4:45281495-45281514 | None:intergenic | 30.0% |
| TGTATTTGAGCCATTTCTTA+CGG | + | chr5_4:45282115-45282134 | Msa0853450:intron | 30.0% | |
| GATTTAAACACCGTAAGAAA+TGG | - | chr5_4:45282128-45282147 | None:intergenic | 30.0% | |
| ACCTATTTCAAAGGGTAAAA+CGG | + | chr5_4:45282252-45282271 | Msa0853450:CDS | 30.0% | |
| ! | ATTTCTAGGTGACTTAGATT+AGG | + | chr5_4:45282395-45282414 | Msa0853450:three_prime_UTR | 30.0% |
| ! | AACATTGGCTAAACAATATC+GGG | - | chr5_4:45282457-45282476 | None:intergenic | 30.0% |
| ! | CAACATTGGCTAAACAATAT+CGG | - | chr5_4:45282458-45282477 | None:intergenic | 30.0% |
| !! | ATACGCAATTTTGACAACAT+TGG | - | chr5_4:45282472-45282491 | None:intergenic | 30.0% |
| TGAGTCAAATCACTCAAAAT+CGG | - | chr5_4:45282628-45282647 | None:intergenic | 30.0% | |
| !! | ATTTTGAGTGATTTGACTCA+CGG | + | chr5_4:45282628-45282647 | Msa0853450:three_prime_UTR | 30.0% |
| !!! | GTTTTGATTTTTCAGCCTAG+GGG | - | chr5_4:45277515-45277534 | None:intergenic | 35.0% |
| !!! | GGTTTTGATTTTTCAGCCTA+GGG | - | chr5_4:45277516-45277535 | None:intergenic | 35.0% |
| AATGTGAGAGAAAACGTTGA+AGG | - | chr5_4:45277817-45277836 | None:intergenic | 35.0% | |
| CAACAAATGAGCATAAAAGG+AGG | - | chr5_4:45277910-45277929 | None:intergenic | 35.0% | |
| ACCTTTCTTCCTCTAACAAA+TGG | + | chr5_4:45277946-45277965 | Msa0853450:CDS | 35.0% | |
| ! | ACCATTTGTTAGAGGAAGAA+AGG | - | chr5_4:45277950-45277969 | None:intergenic | 35.0% |
| ! | GTGAATCTGGAATGACATTT+AGG | + | chr5_4:45278056-45278075 | Msa0853450:intron | 35.0% |
| ! | GCTATTTGTTACAAGGTCAT+AGG | - | chr5_4:45278419-45278438 | None:intergenic | 35.0% |
| !! | GCTATTTGCTATAAGCTCAT+AGG | - | chr5_4:45278471-45278490 | None:intergenic | 35.0% |
| ATGAGCTTATAGCAAATAGC+AGG | + | chr5_4:45278471-45278490 | Msa0853450:intron | 35.0% | |
| CTTATAGCAAATAGCAGGTA+GGG | + | chr5_4:45278476-45278495 | Msa0853450:intron | 35.0% | |
| GCTTATCCGCTATATGTTAT+AGG | - | chr5_4:45278508-45278527 | None:intergenic | 35.0% | |
| ATAAAGCTAGTTCAAGCAAG+TGG | + | chr5_4:45278553-45278572 | Msa0853450:intron | 35.0% | |
| AGGACCAAAATAGACCTATT+TGG | - | chr5_4:45278686-45278705 | None:intergenic | 35.0% | |
| CTTAAAGCTTATAAGCTCGT+AGG | - | chr5_4:45278706-45278725 | None:intergenic | 35.0% | |
| TTATCTAATTCAAAGGGGCT+GGG | + | chr5_4:45278795-45278814 | Msa0853450:intron | 35.0% | |
| ! | TTTTAGTGGCCCTTTTGTAT+TGG | + | chr5_4:45278867-45278886 | Msa0853450:intron | 35.0% |
| !! | CATGTTACCCACTTTTCAAA+TGG | + | chr5_4:45279124-45279143 | Msa0853450:intron | 35.0% |
| GATTGTGTGACATTGACAAA+TGG | + | chr5_4:45279160-45279179 | Msa0853450:intron | 35.0% | |
| TTTCTAATGTGTTACGTTGC+AGG | + | chr5_4:45279283-45279302 | Msa0853450:intron | 35.0% | |
| GATTGTTATACAGATCCTCT+TGG | + | chr5_4:45279318-45279337 | Msa0853450:CDS | 35.0% | |
| !! | GGTATTGATTGCTATTAGGT+TGG | + | chr5_4:45279471-45279490 | Msa0853450:intron | 35.0% |
| CATATACTTGCAGGTTTAGT+TGG | + | chr5_4:45279576-45279595 | Msa0853450:intron | 35.0% | |
| CGAAAATCTCACAAACTGAT+GGG | - | chr5_4:45279864-45279883 | None:intergenic | 35.0% | |
| ACGAAAATCTCACAAACTGA+TGG | - | chr5_4:45279865-45279884 | None:intergenic | 35.0% | |
| !!! | CAGTTCACTTCTGTTTTGAT+AGG | + | chr5_4:45280121-45280140 | Msa0853450:intron | 35.0% |
| CAATTCCTATCACTTAGCAT+GGG | + | chr5_4:45280337-45280356 | Msa0853450:intron | 35.0% | |
| !!! | CAGTTTTTTCCCAAGCTTTA+GGG | - | chr5_4:45280403-45280422 | None:intergenic | 35.0% |
| AAAAAACTGGCAAGTATGGT+TGG | + | chr5_4:45280414-45280433 | Msa0853450:intron | 35.0% | |
| CTTAATGGCTCGTTTATTTC+TGG | - | chr5_4:45280472-45280491 | None:intergenic | 35.0% | |
| !! | AAGGAATTTTGGAAACATGC+AGG | - | chr5_4:45280624-45280643 | None:intergenic | 35.0% |
| CTCAGGAATTCTAGTGTAAA+AGG | - | chr5_4:45280643-45280662 | None:intergenic | 35.0% | |
| TTTCTCCAATAAGGAGTTCT+CGG | - | chr5_4:45281188-45281207 | None:intergenic | 35.0% | |
| TTGGAGAAAAACTTTACCCA+AGG | + | chr5_4:45281199-45281218 | Msa0853450:CDS | 35.0% | |
| ! | AAGTTTAAAGTTGAAGCAGG+AGG | + | chr5_4:45281363-45281382 | Msa0853450:CDS | 35.0% |
| ! | TATGCGCTCTTTTATAAAGG+GGG | - | chr5_4:45281492-45281511 | None:intergenic | 35.0% |
| ! | AAAGAGCGCATATCATTCAA+AGG | + | chr5_4:45281500-45281519 | Msa0853450:intron | 35.0% |
| ! | TTTTAAATTGTGGGCCGATT+TGG | + | chr5_4:45281616-45281635 | Msa0853450:intron | 35.0% |
| TCTGCTGTAATGATCCAAAT+CGG | - | chr5_4:45281633-45281652 | None:intergenic | 35.0% | |
| ACTGTACTGTACAATCAACT+AGG | - | chr5_4:45281702-45281721 | None:intergenic | 35.0% | |
| TATCGCGTGTGTATATAAGA+AGG | - | chr5_4:45281843-45281862 | None:intergenic | 35.0% | |
| ATCACACACCATATCTTGTT+TGG | - | chr5_4:45281940-45281959 | None:intergenic | 35.0% | |
| !! | ATCATACCTTGGTGTTCAAA+AGG | - | chr5_4:45282088-45282107 | None:intergenic | 35.0% |
| ! | TGCTTAAGCTCTTCTCTTTT+AGG | + | chr5_4:45282163-45282182 | Msa0853450:intron | 35.0% |
| !! | AGCTCTTCTCTTTTAGGAAA+TGG | + | chr5_4:45282169-45282188 | Msa0853450:intron | 35.0% |
| !! | GCACCGATTCAAATTTATGA+TGG | + | chr5_4:45282193-45282212 | Msa0853450:CDS | 35.0% |
| !!! | TCCGTTTTACCCTTTGAAAT+AGG | - | chr5_4:45282256-45282275 | None:intergenic | 35.0% |
| TATTTCAAAGGGTAAAACGG+AGG | + | chr5_4:45282255-45282274 | Msa0853450:CDS | 35.0% | |
| GAGTCAAATCGCTCAAAATA+GGG | - | chr5_4:45282510-45282529 | None:intergenic | 35.0% | |
| TGAGTCAAATCGCTCAAAAT+AGG | - | chr5_4:45282511-45282530 | None:intergenic | 35.0% | |
| ! | ATTTTGAGCGATTTGACTCA+TGG | + | chr5_4:45282511-45282530 | Msa0853450:three_prime_UTR | 35.0% |
| GATTTGACTCATGGTGAAAT+CGG | + | chr5_4:45282520-45282539 | Msa0853450:three_prime_UTR | 35.0% | |
| TCACTCAAATTGCTCAACAT+CGG | - | chr5_4:45282554-45282573 | None:intergenic | 35.0% | |
| ATTTGACTCACGGTGAAATT+GGG | + | chr5_4:45282638-45282657 | Msa0853450:three_prime_UTR | 35.0% | |
| !!! | GGGTTTTGATTTTTCAGCCT+AGG | - | chr5_4:45277517-45277536 | None:intergenic | 40.0% |
| ! | ATGAGAGAGAGTGTAAGAGA+AGG | - | chr5_4:45277661-45277680 | None:intergenic | 40.0% |
| !! | CAAATTGATTCGGACATCGT+TGG | - | chr5_4:45277714-45277733 | None:intergenic | 40.0% |
| !! | GTGTCTTTGATAGTGAGAGT+GGG | - | chr5_4:45277777-45277796 | None:intergenic | 40.0% |
| !! | AGTGTCTTTGATAGTGAGAG+TGG | - | chr5_4:45277778-45277797 | None:intergenic | 40.0% |
| TTTGGTAAGCTAGCTGATAG+TGG | + | chr5_4:45278176-45278195 | Msa0853450:intron | 40.0% | |
| ATAGCTAATTGTTGCCGAAC+AGG | + | chr5_4:45278434-45278453 | Msa0853450:intron | 40.0% | |
| AGGACCAAAAGATACCTGTT+CGG | - | chr5_4:45278451-45278470 | None:intergenic | 40.0% | |
| GCTTATAGCAAATAGCAGGT+AGG | + | chr5_4:45278475-45278494 | Msa0853450:intron | 40.0% | |
| GTTATCTAATTCAAAGGGGC+TGG | + | chr5_4:45278794-45278813 | Msa0853450:intron | 40.0% | |
| !! | TTTTGTGCTGCGCTTTTTAG+TGG | + | chr5_4:45278853-45278872 | Msa0853450:intron | 40.0% |
| TGTGTGACATTGACAAATGG+TGG | + | chr5_4:45279163-45279182 | Msa0853450:intron | 40.0% | |
| ! | ACGTTGCAGGATTCATGTTT+TGG | + | chr5_4:45279296-45279315 | Msa0853450:intron | 40.0% |
| GTTATACAGATCCTCTTGGT+TGG | + | chr5_4:45279322-45279341 | Msa0853450:CDS | 40.0% | |
| AAGGGTAAGACAAGGAAATC+TGG | + | chr5_4:45279345-45279364 | Msa0853450:CDS | 40.0% | |
| GCAAGTGAAATTTGGTCAGA+AGG | - | chr5_4:45279384-45279403 | None:intergenic | 40.0% | |
| GCGATTACTGAATTAGGAAG+AGG | + | chr5_4:45279450-45279469 | Msa0853450:CDS | 40.0% | |
| ! | AGGTTGGAAATGTCGCTTAT+TGG | + | chr5_4:45279487-45279506 | Msa0853450:intron | 40.0% |
| CAATGGTATTACCGAGTCTA+TGG | - | chr5_4:45279628-45279647 | None:intergenic | 40.0% | |
| CAACCCAGTAACAACGAATT+GGG | - | chr5_4:45280155-45280174 | None:intergenic | 40.0% | |
| TCAACCCAGTAACAACGAAT+TGG | - | chr5_4:45280156-45280175 | None:intergenic | 40.0% | |
| !! | GTTGAGTTGGTTAGACAGTT+AGG | + | chr5_4:45280186-45280205 | Msa0853450:intron | 40.0% |
| AGTTGGTTAGACAGTTAGGA+TGG | + | chr5_4:45280190-45280209 | Msa0853450:intron | 40.0% | |
| GTTGGTTAGACAGTTAGGAT+GGG | + | chr5_4:45280191-45280210 | Msa0853450:intron | 40.0% | |
| ! | TTAGGATGGGAGTATAGGTA+TGG | + | chr5_4:45280204-45280223 | Msa0853450:intron | 40.0% |
| TGATAGAATTGGGGCCTTTA+AGG | + | chr5_4:45280241-45280260 | Msa0853450:intron | 40.0% | |
| CCATGCTAAGTGATAGGAAT+TGG | - | chr5_4:45280339-45280358 | None:intergenic | 40.0% | |
| CCAATTCCTATCACTTAGCA+TGG | + | chr5_4:45280336-45280355 | Msa0853450:intron | 40.0% | |
| AAGTTCCCATGCTAAGTGAT+AGG | - | chr5_4:45280345-45280364 | None:intergenic | 40.0% | |
| ! | TAGTTGGTTTCCCTAAAGCT+TGG | + | chr5_4:45280390-45280409 | Msa0853450:intron | 40.0% |
| ! | AGTTGGTTTCCCTAAAGCTT+GGG | + | chr5_4:45280391-45280410 | Msa0853450:intron | 40.0% |
| !!! | CCAGTTTTTTCCCAAGCTTT+AGG | - | chr5_4:45280404-45280423 | None:intergenic | 40.0% |
| CCTAAAGCTTGGGAAAAAAC+TGG | + | chr5_4:45280401-45280420 | Msa0853450:intron | 40.0% | |
| TGGGAAAAAACTGGCAAGTA+TGG | + | chr5_4:45280410-45280429 | Msa0853450:intron | 40.0% | |
| ACTCTCACATTCTAGACTTC+TGG | - | chr5_4:45280955-45280974 | None:intergenic | 40.0% | |
| ATTGCATTCTGACCTTCATG+AGG | + | chr5_4:45281093-45281112 | Msa0853450:CDS | 40.0% | |
| TTCTTCCGAGAACTCCTTAT+TGG | + | chr5_4:45281180-45281199 | Msa0853450:CDS | 40.0% | |
| AAATGGACGAGTTAGAGTGA+CGG | + | chr5_4:45281249-45281268 | Msa0853450:CDS | 40.0% | |
| GGAAACTAAAGACTGACCTT+CGG | - | chr5_4:45281444-45281463 | None:intergenic | 40.0% | |
| ! | ATGCGCTCTTTTATAAAGGG+GGG | - | chr5_4:45281491-45281510 | None:intergenic | 40.0% |
| GCAACTACATCTGATTGTGA+GGG | - | chr5_4:45281665-45281684 | None:intergenic | 40.0% | |
| TGCAACTACATCTGATTGTG+AGG | - | chr5_4:45281666-45281685 | None:intergenic | 40.0% | |
| CTGTACAATCAACTAGGTTG+CGG | - | chr5_4:45281696-45281715 | None:intergenic | 40.0% | |
| ACTAAGTGCTTAGCATGTGT+AGG | - | chr5_4:45281813-45281832 | None:intergenic | 40.0% | |
| CACAGTCACAAACAGTTGTA+AGG | + | chr5_4:45281901-45281920 | Msa0853450:intron | 40.0% | |
| GACAGAGACCAAACAAGATA+TGG | + | chr5_4:45281929-45281948 | Msa0853450:intron | 40.0% | |
| ACAATTCAATCTCCAGCTGT+CGG | + | chr5_4:45282027-45282046 | Msa0853450:CDS | 40.0% | |
| GATTTGACTCACGGTGAAAT+TGG | + | chr5_4:45282637-45282656 | Msa0853450:three_prime_UTR | 40.0% | |
| GGTGAAATTGGGTAAAATCG+AGG | + | chr5_4:45282649-45282668 | Msa0853450:three_prime_UTR | 40.0% | |
| !! | TTGATTTTTCAGCCTAGGGG+AGG | - | chr5_4:45277512-45277531 | None:intergenic | 45.0% |
| ATTTGCAGATCCTTACGCGA+CGG | + | chr5_4:45277729-45277748 | Msa0853450:CDS | 45.0% | |
| GAGAAAACGTTGAAGGCGAA+AGG | - | chr5_4:45277810-45277829 | None:intergenic | 45.0% | |
| !! | GTTGGAGTGAGATTTTGGTG+AGG | - | chr5_4:45277853-45277872 | None:intergenic | 45.0% |
| !! | GCAGTGTTGGAGTGAGATTT+TGG | - | chr5_4:45277858-45277877 | None:intergenic | 45.0% |
| AACAACGACGATAGCAGTGT+TGG | - | chr5_4:45277871-45277890 | None:intergenic | 45.0% | |
| ! | GTTGCCGAACAGGTATCTTT+TGG | + | chr5_4:45278444-45278463 | Msa0853450:intron | 45.0% |
| CCATAACTAAGGCTTCTGCT+TGG | - | chr5_4:45278746-45278765 | None:intergenic | 45.0% | |
| CCAAGCAGAAGCCTTAGTTA+TGG | + | chr5_4:45278743-45278762 | Msa0853450:intron | 45.0% | |
| TACAGATCCTCTTGGTTGGA+AGG | + | chr5_4:45279326-45279345 | Msa0853450:CDS | 45.0% | |
| ACAGATCCTCTTGGTTGGAA+GGG | + | chr5_4:45279327-45279346 | Msa0853450:CDS | 45.0% | |
| TTGGTTGGAAGGGTAAGACA+AGG | + | chr5_4:45279337-45279356 | Msa0853450:CDS | 45.0% | |
| AGTCTATGGCAACACAAACG+CGG | - | chr5_4:45279614-45279633 | None:intergenic | 45.0% | |
| CGTTTGTGTTGCCATAGACT+CGG | + | chr5_4:45279614-45279633 | Msa0853450:CDS | 45.0% | |
| TGTAGGGAACTCATGCAGTA+AGG | + | chr5_4:45279976-45279995 | Msa0853450:intron | 45.0% | |
| GTAGGGAACTCATGCAGTAA+GGG | + | chr5_4:45279977-45279996 | Msa0853450:intron | 45.0% | |
| TAGGGAACTCATGCAGTAAG+GGG | + | chr5_4:45279978-45279997 | Msa0853450:intron | 45.0% | |
| CAGTAACAACGAATTGGGTG+GGG | - | chr5_4:45280150-45280169 | None:intergenic | 45.0% | |
| CCAGTAACAACGAATTGGGT+GGG | - | chr5_4:45280151-45280170 | None:intergenic | 45.0% | |
| CCACCCAATTCGTTGTTACT+GGG | + | chr5_4:45280149-45280168 | Msa0853450:intron | 45.0% | |
| ! | GACAGTTAGGATGGGAGTAT+AGG | + | chr5_4:45280199-45280218 | Msa0853450:intron | 45.0% |
| TCTGGGAAGTTTAAGAGGTG+AGG | - | chr5_4:45280454-45280473 | None:intergenic | 45.0% | |
| ATTCTGACCTTCATGAGGAG+AGG | + | chr5_4:45281098-45281117 | Msa0853450:CDS | 45.0% | |
| TTCTGACCTTCATGAGGAGA+GGG | + | chr5_4:45281099-45281118 | Msa0853450:CDS | 45.0% | |
| TCTTGAGTACATGTCCTCCA+TGG | + | chr5_4:45281132-45281151 | Msa0853450:CDS | 45.0% | |
| TGATTCTACACTAGCCACCA+TGG | - | chr5_4:45281152-45281171 | None:intergenic | 45.0% | |
| GTCAGACTCAAACGCAGAAA+TGG | + | chr5_4:45281232-45281251 | Msa0853450:CDS | 45.0% | |
| ACTTCTGCTTCAGCAGAAGA+TGG | + | chr5_4:45281396-45281415 | Msa0853450:CDS | 45.0% | |
| !! | GGAGAAGGAGCAAGTTGATA+GGG | + | chr5_4:45282048-45282067 | Msa0853450:CDS | 45.0% |
| ! | GTGCTTCCTTTTGAACACCA+AGG | + | chr5_4:45282079-45282098 | Msa0853450:CDS | 45.0% |
| TCTGGGTCTTCATCAGAATC+TGG | - | chr5_4:45282331-45282350 | None:intergenic | 45.0% | |
| !! | GCTGATAGTGGATAAACCCG+TGG | + | chr5_4:45278188-45278207 | Msa0853450:intron | 50.0% |
| GTCTTACCCTTCCAACCAAG+AGG | - | chr5_4:45279336-45279355 | None:intergenic | 50.0% | |
| CCCACCCAATTCGTTGTTAC+TGG | + | chr5_4:45280148-45280167 | Msa0853450:intron | 50.0% | |
| CCCAGTAACAACGAATTGGG+TGG | - | chr5_4:45280152-45280171 | None:intergenic | 50.0% | |
| GGCTACGCAGATTGCTTAGA+AGG | - | chr5_4:45280839-45280858 | None:intergenic | 50.0% | |
| CTAAGCAATCTGCGTAGCCA+TGG | + | chr5_4:45280840-45280859 | Msa0853450:CDS | 50.0% | |
| TGAGTACATGTCCTCCATGG+TGG | + | chr5_4:45281135-45281154 | Msa0853450:CDS | 50.0% | |
| TTCTACACTAGCCACCATGG+AGG | - | chr5_4:45281149-45281168 | None:intergenic | 50.0% | |
| GAAGATGGAACAACCGTTGC+AGG | + | chr5_4:45281411-45281430 | Msa0853450:CDS | 50.0% | |
| AGCATGTGTAGGCATGGCAT+CGG | - | chr5_4:45281802-45281821 | None:intergenic | 50.0% | |
| GTGCTTAGCATGTGTAGGCA+TGG | - | chr5_4:45281808-45281827 | None:intergenic | 50.0% | |
| !! | CGGAGAAGGAGCAAGTTGAT+AGG | + | chr5_4:45282047-45282066 | Msa0853450:CDS | 50.0% |
| !! | GGAGCAAGTTGATAGGGCAA+AGG | + | chr5_4:45282054-45282073 | Msa0853450:CDS | 50.0% |
| CTCACTGCTGCTCTCTTCAA+GGG | - | chr5_4:45282227-45282246 | None:intergenic | 50.0% | |
| CTTGAAGAGAGCAGCAGTGA+GGG | + | chr5_4:45282226-45282245 | Msa0853450:CDS | 50.0% | |
| TTGAAGAGAGCAGCAGTGAG+GGG | + | chr5_4:45282227-45282246 | Msa0853450:CDS | 50.0% | |
| !! | TGAGGGGGCACCTATTTCAA+AGG | + | chr5_4:45282243-45282262 | Msa0853450:CDS | 50.0% |
| !! | GAGGGGGCACCTATTTCAAA+GGG | + | chr5_4:45282244-45282263 | Msa0853450:CDS | 50.0% |
| GTAGAGTGACACTGCTCTGC+CGG | - | chr5_4:45277558-45277577 | None:intergenic | 55.0% | |
| TTCGGGGGTCTGCACCTTAA+AGG | - | chr5_4:45280258-45280277 | None:intergenic | 55.0% | |
| CTTCGGCAGTAAGCCTGCAA+CGG | - | chr5_4:45281427-45281446 | None:intergenic | 55.0% | |
| CAATCTCCAGCTGTCGGAGA+AGG | + | chr5_4:45282033-45282052 | Msa0853450:CDS | 55.0% | |
| CCTCACTGCTGCTCTCTTCA+AGG | - | chr5_4:45282228-45282247 | None:intergenic | 55.0% | |
| CCTTGAAGAGAGCAGCAGTG+AGG | + | chr5_4:45282225-45282244 | Msa0853450:CDS | 55.0% | |
| TGAAGAGAGCAGCAGTGAGG+GGG | + | chr5_4:45282228-45282247 | Msa0853450:CDS | 55.0% | |
| AAAACGGAGGACTCAGCCCT+AGG | + | chr5_4:45282268-45282287 | Msa0853450:CDS | 55.0% | |
| !!! | GGCTGGGTTTTGGGCGGAAA+GGG | - | chr5_4:45277537-45277556 | None:intergenic | 60.0% |
| CTTTCCGCCCAAAACCCAGC+CGG | + | chr5_4:45277536-45277555 | Msa0853450:five_prime_UTR | 60.0% | |
| !! | TGCTCTGCCGGCTGGGTTTT+GGG | - | chr5_4:45277546-45277565 | None:intergenic | 60.0% |
| TTCTAACGCGCCGTCGCGTA+AGG | - | chr5_4:45277742-45277761 | None:intergenic | 60.0% | |
| TTACGCGACGGCGCGTTAGA+AGG | + | chr5_4:45277741-45277760 | Msa0853450:CDS | 60.0% | |
| CTGCAGCCCTCTCCTCATGA+AGG | - | chr5_4:45281108-45281127 | None:intergenic | 60.0% | |
| CGTTGCAGGCTTACTGCCGA+AGG | + | chr5_4:45281425-45281444 | Msa0853450:CDS | 60.0% | |
| CTTGCTCCTTCTCCGACAGC+TGG | - | chr5_4:45282042-45282061 | None:intergenic | 60.0% | |
| !!! | CGGCTGGGTTTTGGGCGGAA+AGG | - | chr5_4:45277538-45277557 | None:intergenic | 65.0% |
| !!! | TCTGCCGGCTGGGTTTTGGG+CGG | - | chr5_4:45277543-45277562 | None:intergenic | 65.0% |
| !! | CTGCTCTGCCGGCTGGGTTT+TGG | - | chr5_4:45277547-45277566 | None:intergenic | 65.0% |
| ! | GTGACACTGCTCTGCCGGCT+GGG | - | chr5_4:45277553-45277572 | None:intergenic | 65.0% |
| AGTGACACTGCTCTGCCGGC+TGG | - | chr5_4:45277554-45277573 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 45277501 | 45282740 | 45277501 | ID=Msa0853450;Name=Msa0853450 |
| chr5_4 | mRNA | 45277501 | 45282740 | 45277501 | ID=Msa0853450-mRNA-1;Parent=Msa0853450;Name=Msa0853450-mRNA-1;_AED=0.11;_eAED=0.11;_QI=216|1|1|1|1|1|8|371|362 |
| chr5_4 | exon | 45277501 | 45277967 | 45277501 | ID=Msa0853450-mRNA-1:exon:14255;Parent=Msa0853450-mRNA-1 |
| chr5_4 | exon | 45279305 | 45279471 | 45279305 | ID=Msa0853450-mRNA-1:exon:14256;Parent=Msa0853450-mRNA-1 |
| chr5_4 | exon | 45279589 | 45279635 | 45279589 | ID=Msa0853450-mRNA-1:exon:14257;Parent=Msa0853450-mRNA-1 |
| chr5_4 | exon | 45280792 | 45280861 | 45280792 | ID=Msa0853450-mRNA-1:exon:14258;Parent=Msa0853450-mRNA-1 |
| chr5_4 | exon | 45281068 | 45281270 | 45281068 | ID=Msa0853450-mRNA-1:exon:14259;Parent=Msa0853450-mRNA-1 |
| chr5_4 | exon | 45281357 | 45281446 | 45281357 | ID=Msa0853450-mRNA-1:exon:14260;Parent=Msa0853450-mRNA-1 |
| chr5_4 | exon | 45282025 | 45282100 | 45282025 | ID=Msa0853450-mRNA-1:exon:14261;Parent=Msa0853450-mRNA-1 |
| chr5_4 | exon | 45282185 | 45282740 | 45282185 | ID=Msa0853450-mRNA-1:exon:14262;Parent=Msa0853450-mRNA-1 |
| chr5_4 | five_prime_UTR | 45277501 | 45277716 | 45277501 | ID=Msa0853450-mRNA-1:five_prime_utr;Parent=Msa0853450-mRNA-1 |
| chr5_4 | CDS | 45277717 | 45277967 | 45277717 | ID=Msa0853450-mRNA-1:cds;Parent=Msa0853450-mRNA-1 |
| chr5_4 | CDS | 45279305 | 45279471 | 45279305 | ID=Msa0853450-mRNA-1:cds;Parent=Msa0853450-mRNA-1 |
| chr5_4 | CDS | 45279589 | 45279635 | 45279589 | ID=Msa0853450-mRNA-1:cds;Parent=Msa0853450-mRNA-1 |
| chr5_4 | CDS | 45280792 | 45280861 | 45280792 | ID=Msa0853450-mRNA-1:cds;Parent=Msa0853450-mRNA-1 |
| chr5_4 | CDS | 45281068 | 45281270 | 45281068 | ID=Msa0853450-mRNA-1:cds;Parent=Msa0853450-mRNA-1 |
| chr5_4 | CDS | 45281357 | 45281446 | 45281357 | ID=Msa0853450-mRNA-1:cds;Parent=Msa0853450-mRNA-1 |
| chr5_4 | CDS | 45282025 | 45282100 | 45282025 | ID=Msa0853450-mRNA-1:cds;Parent=Msa0853450-mRNA-1 |
| chr5_4 | CDS | 45282185 | 45282369 | 45282185 | ID=Msa0853450-mRNA-1:cds;Parent=Msa0853450-mRNA-1 |
| chr5_4 | three_prime_UTR | 45282370 | 45282740 | 45282370 | ID=Msa0853450-mRNA-1:three_prime_utr;Parent=Msa0853450-mRNA-1 |
| Gene Sequence |
| Protein sequence |
