AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0813050


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0813050 MtrunA17_Chr1g0146881 51.754 114 19 3 1 78 62 175 4.90e-26 100
Msa0813050 MtrunA17_Chr5g0430961 71.014 69 12 2 29 94 26 89 2.85e-23 86.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0813050 AT5G53050.2 43.590 78 16 2 29 78 86 163 6.87e-11 58.5
Msa0813050 AT5G53050.3 43.590 78 16 2 29 78 86 163 6.87e-11 58.5
Msa0813050 AT5G53050.6 43.590 78 16 2 29 78 86 163 7.63e-11 58.2
Msa0813050 AT5G53050.1 43.590 78 16 2 29 78 86 163 8.78e-11 58.2
Msa0813050 AT5G53050.4 43.590 78 16 2 29 78 86 163 9.32e-11 58.2

Find 91 sgRNAs with CRISPR-Local

Find 212 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGCTTCAATTTGCCAATTT+AGG 0.137831 5_3:-43536326 Msa0813050:three_prime_UTR
GAACGAAAGTAAATTGTTTC+TGG 0.159554 5_3:+43536241 None:intergenic
TTTCGTTCACATGATGTATT+TGG 0.173947 5_3:-43536226 Msa0813050:three_prime_UTR
TTTCATGTGTGAAATGTTTA+TGG 0.221618 5_3:-43537882 Msa0813050:three_prime_UTR
CATAAGAAAGCACCCTAAAT+TGG 0.243018 5_3:+43536313 None:intergenic
AAGATTGACATGCTATCTTT+AGG 0.258884 5_3:-43537716 Msa0813050:three_prime_UTR
AGCTTCAATTTGCCAATTTA+GGG 0.270290 5_3:-43536325 Msa0813050:three_prime_UTR
TGTTATGTGACTTTCTCTTT+TGG 0.274538 5_3:-43537393 Msa0813050:three_prime_UTR
ATTAACAAACACAGCATAAT+AGG 0.287942 5_3:+43538325 None:intergenic
GACAAGATTATCTCATATTC+TGG 0.295042 5_3:-43537597 Msa0813050:three_prime_UTR
AGATTGACATGCTATCTTTA+GGG 0.306134 5_3:-43537715 Msa0813050:three_prime_UTR
ATGATGAAGAAAACGTCTTT+TGG 0.306216 5_3:-43539642 Msa0813050:CDS
ATGTTACAAATCAAAATTCT+TGG 0.309777 5_3:-43538304 Msa0813050:CDS
TCTTATTCCCATTGAATCAT+TGG 0.322394 5_3:-43536611 Msa0813050:three_prime_UTR
AATTCTGACTATTAGTGTTT+AGG 0.326369 5_3:+43537832 None:intergenic
CAATCTTCTACAACCATTAC+AGG 0.339805 5_3:+43537732 None:intergenic
ATTAAAGCAGCTGCTAAAAC+TGG 0.345489 5_3:-43536909 Msa0813050:intron
ATTAGAGAGCCTACCAATTC+AGG 0.345911 5_3:+43537524 None:intergenic
ACAAATTCTGCTATAGTTGT+TGG 0.351617 5_3:-43536669 Msa0813050:three_prime_UTR
GTGCTGCACAATTCTGCCTT+TGG 0.365777 5_3:-43536352 Msa0813050:three_prime_UTR
GAAGGAGCTTAATCAACTAA+TGG 0.366961 5_3:+43536380 None:intergenic
AAGGAGCTTAATCAACTAAT+GGG 0.369445 5_3:+43536381 None:intergenic
TTTCTTGGTAGTCTCTTTGT+AGG 0.369841 5_3:-43537450 Msa0813050:intron
TGCCACATTTCCACCTGAAT+TGG 0.386401 5_3:-43537537 Msa0813050:intron
CAGTTCTCATTCTTCGGAAA+GGG 0.386986 5_3:+43537078 None:intergenic
ATAGGTAATGAACAGTTAGA+TGG 0.396356 5_3:-43536137 Msa0813050:three_prime_UTR
TTCTTCAACCAATGATTCAA+TGG 0.397516 5_3:+43536603 None:intergenic
AGGAGGAAACATGGGAGGAC+CGG 0.406981 5_3:-43537620 Msa0813050:three_prime_UTR
TGATATATCTTTGCCTGTAA+TGG 0.408199 5_3:-43537745 Msa0813050:three_prime_UTR
TTGATGATCAGACTTGCTAA+TGG 0.408554 5_3:+43539561 None:intergenic
GCTCTCCAGTTCTCATTCTT+CGG 0.411506 5_3:+43537072 None:intergenic
ATCATTAGGTACGTTTGTTC+CGG 0.415070 5_3:+43539660 None:intergenic
AAATCCGAGAGAACTCTATC+AGG 0.417095 5_3:+43539000 None:intergenic
CAAATTCTGCTATAGTTGTT+GGG 0.422885 5_3:-43536668 Msa0813050:three_prime_UTR
CAAAGATATAAATGTGTGTA+AGG 0.435730 5_3:-43536439 Msa0813050:three_prime_UTR
TAAACACTAATAGTCAGAAT+TGG 0.436569 5_3:-43537830 Msa0813050:three_prime_UTR
CCAAAGTCAAGAGACATTAG+AGG 0.440154 5_3:+43537422 None:intergenic
CCTCTAATGTCTCTTGACTT+TGG 0.442600 5_3:-43537422 Msa0813050:three_prime_UTR
GTGGTAATCGTGGCGTGGGT+CGG 0.444378 5_3:-43539594 Msa0813050:CDS
CCAGTTCTCATTCTTCGGAA+AGG 0.445257 5_3:+43537077 None:intergenic
TATGATAAAAGCCAAGCTTC+CGG 0.445918 5_3:-43536819 Msa0813050:three_prime_UTR
CGACAAATGACAGGATTAAC+CGG 0.447546 5_3:-43539679 None:intergenic
TTCATTATCTCCAACATTGA+AGG 0.455007 5_3:-43537652 Msa0813050:three_prime_UTR
TCGGATTTGCTATATGCAAC+AGG 0.456260 5_3:-43538985 Msa0813050:CDS
CCTTTCCGAAGAATGAGAAC+TGG 0.464369 5_3:-43537077 Msa0813050:three_prime_UTR
TGATGATCAGACTTGCTAAT+GGG 0.468201 5_3:+43539562 None:intergenic
TCTTCAACCAATGATTCAAT+GGG 0.477181 5_3:+43536604 None:intergenic
TTGCATCGCTCCTTCAATGT+TGG 0.479367 5_3:+43537642 None:intergenic
TGTGCAAGGTGAGTTATTTG+AGG 0.481165 5_3:-43536102 Msa0813050:three_prime_UTR
GGAGGAAACATGGGAGGACC+GGG 0.482537 5_3:-43537619 Msa0813050:three_prime_UTR
ATGTACTTGAAGTGAATATC+CGG 0.491639 5_3:+43536800 None:intergenic
AATTGTGCAGCACACATTGA+AGG 0.500321 5_3:+43536362 None:intergenic
TTATTTGTATATTTCCCCTA+AGG 0.501306 5_3:+43537026 None:intergenic
CAACCTGTACATTTAAAAGA+TGG 0.502329 5_3:+43536160 None:intergenic
AAATATACAAATAATTGTGC+AGG 0.513258 5_3:-43537017 Msa0813050:intron
TAGGTAATGAACAGTTAGAT+GGG 0.514468 5_3:-43536136 Msa0813050:three_prime_UTR
CTTGGTTCAAGCTATTAGCC+AGG 0.517123 5_3:-43538286 Msa0813050:intron
TGCGGTGGTAATCGTGGCGT+GGG 0.526133 5_3:-43539598 Msa0813050:CDS
GGTTCCTGATAGAGTTCTCT+CGG 0.530158 5_3:-43539004 Msa0813050:CDS
GAAGTGAATATCCGGAAGCT+TGG 0.545117 5_3:+43536808 None:intergenic
CAAATTGAAGCTTCAACCAA+AGG 0.545380 5_3:+43536336 None:intergenic
TGAAATGTTTATGGAAGAGT+TGG 0.545525 5_3:-43537873 Msa0813050:three_prime_UTR
AGCCTGTAAAATAGCAGCAA+TGG 0.549672 5_3:-43539025 Msa0813050:CDS
TGGAATTACGCAGTTGATGT+TGG 0.550274 5_3:-43537577 Msa0813050:three_prime_UTR
ATTAGCAAGTCTGATCATCA+AGG 0.555363 5_3:-43539559 Msa0813050:intron
AACATTGAAGGAGCGATGCA+AGG 0.567694 5_3:-43537640 Msa0813050:three_prime_UTR
AGCGATGCAAGGAGGAAACA+TGG 0.570383 5_3:-43537629 Msa0813050:three_prime_UTR
GGGTCGGGTCGACAAATGAC+AGG 0.588837 5_3:-43539688 None:intergenic
TTCACTTCAAGTACATCGAA+AGG 0.595217 5_3:-43536793 Msa0813050:intron
TACCAATTCAGGTGGAAATG+TGG 0.602730 5_3:+43537535 None:intergenic
AGGAGCTTAATCAACTAATG+GGG 0.606994 5_3:+43536382 None:intergenic
ACCACACCTCACTTCTCTCG+AGG 0.618395 5_3:-43537684 Msa0813050:three_prime_UTR
AATATGAGATAATCTTGTCC+CGG 0.622433 5_3:+43537601 None:intergenic
AGAGGAGGTGACAGTGAGTG+CGG 0.629439 5_3:-43539616 Msa0813050:CDS
GGTTGCCTATGAGAAAATGC+CGG 0.633045 5_3:+43538346 None:intergenic
TGGTTGAAGAATGTGAGAAG+AGG 0.636685 5_3:-43536591 Msa0813050:intron
AAAGAGAAAGTCACATAACA+AGG 0.638639 5_3:+43537396 None:intergenic
GGAGCTTAATCAACTAATGG+GGG 0.644806 5_3:+43536383 None:intergenic
AGTGAGTGCGGTGGTAATCG+TGG 0.646803 5_3:-43539604 Msa0813050:CDS
AGAGAGCCTACCAATTCAGG+TGG 0.651833 5_3:+43537527 None:intergenic
GCGATGCAAGGAGGAAACAT+GGG 0.659072 5_3:-43537628 Msa0813050:three_prime_UTR
ACCTCGAGAGAAGTGAGGTG+TGG 0.661046 5_3:+43537683 None:intergenic
CATCGACAGAACAACAACTC+CGG 0.661057 5_3:-43538365 Msa0813050:CDS
ATGTGTAGAGAATGTGACAT+GGG 0.663555 5_3:-43536878 Msa0813050:three_prime_UTR
GGAGGTGACAGTGAGTGCGG+TGG 0.679287 5_3:-43539613 Msa0813050:CDS
GATTTGCTATATGCAACAGG+TGG 0.679981 5_3:-43538982 Msa0813050:CDS
TCAGAACCTCGAGAGAAGTG+AGG 0.690287 5_3:+43537678 None:intergenic
ATGTGTGTAAGGCTCTGCAG+TGG 0.692522 5_3:-43536428 Msa0813050:three_prime_UTR
ATGCAAGGAGGAAACATGGG+AGG 0.695533 5_3:-43537625 Msa0813050:three_prime_UTR
ATTGAAGGAGCGATGCAAGG+AGG 0.716412 5_3:-43537637 Msa0813050:three_prime_UTR
AATGTGTAGAGAATGTGACA+TGG 0.746081 5_3:-43536879 Msa0813050:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTTAAATTAGAAAGTAATA+TGG + chr5_3:43537334-43537353 None:intergenic 10.0%
!! CAATATATGTTAAATATTAT+AGG + chr5_3:43537822-43537841 None:intergenic 10.0%
!!! TATATTGTTTTTCATGTTTT+TGG - chr5_3:43536301-43536320 Msa0813050:three_prime_UTR 15.0%
!!! ATATTGTTTTTCATGTTTTT+GGG - chr5_3:43536302-43536321 Msa0813050:three_prime_UTR 15.0%
!!! TATATTGTTTTTCATGTTTT+TGG - chr5_3:43536301-43536320 Msa0813050:three_prime_UTR 15.0%
!!! ATATTGTTTTTCATGTTTTT+GGG - chr5_3:43536302-43536321 Msa0813050:three_prime_UTR 15.0%
!!! AGTTTTTGAATGTAATTATA+TGG - chr5_3:43536446-43536465 Msa0813050:three_prime_UTR 15.0%
!!! GTTTTTGAATGTAATTATAT+GGG - chr5_3:43536447-43536466 Msa0813050:three_prime_UTR 15.0%
!! TTTAATTACAAACTTAGTTT+AGG - chr5_3:43536960-43536979 Msa0813050:intron 15.0%
!! TAATTTAAATTTCTATATGC+AGG - chr5_3:43537344-43537363 Msa0813050:intron 15.0%
!! GAAATATAATCTTAGAAAAA+TGG + chr5_3:43539067-43539086 None:intergenic 15.0%
!! ACTAAAATGAGAAAATAATA+TGG + chr5_3:43539253-43539272 None:intergenic 15.0%
!! TGATTTAGTTAAAATTCAGA+TGG - chr5_3:43536643-43536662 Msa0813050:three_prime_UTR 20.0%
!! ACTTAACCTAATAAAATCTT+AGG + chr5_3:43536674-43536693 None:intergenic 20.0%
!! CATTTCAGAGAATTATAAAA+GGG + chr5_3:43536849-43536868 None:intergenic 20.0%
!! ACATTTCAGAGAATTATAAA+AGG + chr5_3:43536850-43536869 None:intergenic 20.0%
!! TTAAGATGTTAACTACATTA+AGG - chr5_3:43536921-43536940 Msa0813050:intron 20.0%
!!! AATTTCTTAGTACTGATTTT+AGG - chr5_3:43537012-43537031 Msa0813050:intron 20.0%
!!! ACATTATTTGCAGATTTTTA+AGG - chr5_3:43537128-43537147 Msa0813050:intron 20.0%
!! ATGTTACAAATCAAAATTCT+TGG - chr5_3:43537471-43537490 Msa0813050:intron 20.0%
!!! ATTTTTCACAACATGTTTAT+CGG + chr5_3:43537599-43537618 None:intergenic 20.0%
!! TAAACATGTTGTGAAAAATA+TGG - chr5_3:43537600-43537619 Msa0813050:three_prime_UTR 20.0%
!!! GATTTTGTTAAGCATATTTT+AGG - chr5_3:43537969-43537988 Msa0813050:intron 20.0%
!! ACAGTAAAAAAGAATAAAGA+CGG + chr5_3:43538283-43538302 None:intergenic 20.0%
!!! TGAATATCCCTTTTTTATTT+GGG - chr5_3:43538466-43538485 Msa0813050:intron 20.0%
!! AAATATACAAATAATTGTGC+AGG - chr5_3:43538758-43538777 Msa0813050:intron 20.0%
!! CTTATTCATACCAAAAATAA+TGG - chr5_3:43539578-43539597 Msa0813050:CDS 20.0%
! ATTACTTTGTTGGATCATTT+AGG - chr5_3:43536542-43536561 Msa0813050:intron 25.0%
!! GTTTGTCCTAAGATTTTATT+AGG - chr5_3:43536665-43536684 Msa0813050:three_prime_UTR 25.0%
! TTATATTTGCCTATTGAAAC+AGG - chr5_3:43536718-43536737 Msa0813050:intron 25.0%
! CTCAACTAAATTTCTTCTAA+AGG + chr5_3:43537042-43537061 None:intergenic 25.0%
! AGTTGAGAATTATCTTTCTA+TGG - chr5_3:43537055-43537074 Msa0813050:three_prime_UTR 25.0%
!!! TGAAGGATTAAACTTTTTCT+TGG - chr5_3:43537198-43537217 Msa0813050:intron 25.0%
! ATTAACAAACACAGCATAAT+AGG + chr5_3:43537453-43537472 None:intergenic 25.0%
!!! AAACTTCAATCTGCTATTTT+TGG - chr5_3:43537717-43537736 Msa0813050:three_prime_UTR 25.0%
!!! AATATTTTGAGATATGGAGT+CGG + chr5_3:43537754-43537773 None:intergenic 25.0%
!!! AAGCTGAATATTTTGAGATA+TGG + chr5_3:43537760-43537779 None:intergenic 25.0%
! ATATTATAGGAACTGAAGAA+TGG + chr5_3:43537809-43537828 None:intergenic 25.0%
!! ATATTTTCTTGAAAACATGC+AGG - chr5_3:43537862-43537881 Msa0813050:three_prime_UTR 25.0%
! TTTCATGTGTGAAATGTTTA+TGG - chr5_3:43537893-43537912 Msa0813050:three_prime_UTR 25.0%
! AATTCTGACTATTAGTGTTT+AGG + chr5_3:43537946-43537965 None:intergenic 25.0%
! TAAACACTAATAGTCAGAAT+TGG - chr5_3:43537945-43537964 Msa0813050:intron 25.0%
! TAAAAAAGAATAAAGACGGA+GGG + chr5_3:43538279-43538298 None:intergenic 25.0%
! CAAATAAAAAAGGGATATTC+AGG + chr5_3:43538467-43538486 None:intergenic 25.0%
!!! CTGAATATCCCTTTTTTATT+TGG - chr5_3:43538465-43538484 Msa0813050:intron 25.0%
!!! GAATATCCCTTTTTTATTTG+GGG - chr5_3:43538467-43538486 Msa0813050:intron 25.0%
! TTTCACAAAGTTGAGAAATA+TGG + chr5_3:43538543-43538562 None:intergenic 25.0%
! TATTTCTCAACTTTGTGAAA+AGG - chr5_3:43538543-43538562 Msa0813050:intron 25.0%
!! ATCTTTTATTGGTAAACCTT+AGG - chr5_3:43538733-43538752 Msa0813050:intron 25.0%
!! TCTTTTATTGGTAAACCTTA+GGG - chr5_3:43538734-43538753 Msa0813050:intron 25.0%
! TTATTTGTATATTTCCCCTA+AGG + chr5_3:43538752-43538771 None:intergenic 25.0%
! ATGTAATTGAAGTGAATATC+AGG + chr5_3:43538848-43538867 None:intergenic 25.0%
! AGATTATATTTCTTGCTTCT+AGG - chr5_3:43539075-43539094 Msa0813050:intron 25.0%
! GAGAAAATAATATGGTCAAA+AGG + chr5_3:43539245-43539264 None:intergenic 25.0%
!!! ATTGAACATATTTTGAGTGA+GGG - chr5_3:43539310-43539329 Msa0813050:intron 25.0%
! CAAAGATATAAATGTGTGTA+AGG - chr5_3:43539336-43539355 Msa0813050:intron 25.0%
!! CTAAACTGAACCATTATTTT+TGG + chr5_3:43539591-43539610 None:intergenic 25.0%
!! TTACCATCTTTTAAATGTAC+AGG - chr5_3:43539612-43539631 Msa0813050:CDS 25.0%
!!! TTTTAAATGTACAGGTTGAT+AGG - chr5_3:43539620-43539639 Msa0813050:CDS 25.0%
! AAGACGTTTTCTTCATCATT+AGG + chr5_3:43536132-43536151 None:intergenic 30.0%
! ATGATGAAGAAAACGTCTTT+TGG - chr5_3:43536133-43536152 Msa0813050:three_prime_UTR 30.0%
ATGTCATAGATATGAAGTGT+TGG - chr5_3:43536489-43536508 Msa0813050:three_prime_UTR 30.0%
TTGGATACAAACAAAGATCA+CGG - chr5_3:43536508-43536527 Msa0813050:intron 30.0%
AAAGGATGCAATTACTTTGT+TGG - chr5_3:43536532-43536551 Msa0813050:intron 30.0%
ATCATAGATCCTGTTTCAAT+AGG + chr5_3:43536730-43536749 None:intergenic 30.0%
! ATGTTTTCAATGTTTTCCAG+AGG - chr5_3:43536816-43536835 Msa0813050:three_prime_UTR 30.0%
!! TCGTAGTACTGAAATTTTGT+CGG - chr5_3:43537104-43537123 Msa0813050:intron 30.0%
GAAAAAGTTTAATCCTTCAC+AGG + chr5_3:43537197-43537216 None:intergenic 30.0%
!! ACTTCTTCTAGAGTCAATAT+GGG + chr5_3:43537272-43537291 None:intergenic 30.0%
!! AACTTCTTCTAGAGTCAATA+TGG + chr5_3:43537273-43537292 None:intergenic 30.0%
!!! ATATTTTGAGATATGGAGTC+GGG + chr5_3:43537753-43537772 None:intergenic 30.0%
! TCAAAATATTCAGCTTTTCG+TGG - chr5_3:43537764-43537783 Msa0813050:three_prime_UTR 30.0%
TGAAATGTTTATGGAAGAGT+TGG - chr5_3:43537902-43537921 Msa0813050:intron 30.0%
TGATATATCTTTGCCTGTAA+TGG - chr5_3:43538030-43538049 Msa0813050:intron 30.0%
AAGATTGACATGCTATCTTT+AGG - chr5_3:43538059-43538078 Msa0813050:intron 30.0%
AGATTGACATGCTATCTTTA+GGG - chr5_3:43538060-43538079 Msa0813050:intron 30.0%
TTCATTATCTCCAACATTGA+AGG - chr5_3:43538123-43538142 Msa0813050:intron 30.0%
AATATGAGATAATCTTGTCC+CGG + chr5_3:43538177-43538196 None:intergenic 30.0%
GACAAGATTATCTCATATTC+TGG - chr5_3:43538178-43538197 Msa0813050:intron 30.0%
GTAAAAAAGAATAAAGACGG+AGG + chr5_3:43538280-43538299 None:intergenic 30.0%
AAAGAGAAAGTCACATAACA+AGG + chr5_3:43538382-43538401 None:intergenic 30.0%
! TGTTATGTGACTTTCTCTTT+TGG - chr5_3:43538382-43538401 Msa0813050:CDS 30.0%
TTACTGCACTATAAGAAGTA+AGG + chr5_3:43538439-43538458 None:intergenic 30.0%
TCAATGCCCCAAATAAAAAA+GGG + chr5_3:43538476-43538495 None:intergenic 30.0%
TTCAATGCCCCAAATAAAAA+AGG + chr5_3:43538477-43538496 None:intergenic 30.0%
ATCAACTTAAATAGCCCTAA+TGG + chr5_3:43538576-43538595 None:intergenic 30.0%
!! ATTAGGGCTATTTAAGTTGA+TGG - chr5_3:43538575-43538594 Msa0813050:intron 30.0%
CAAAACATTGTTGAATTCGT+TGG - chr5_3:43538640-43538659 Msa0813050:intron 30.0%
! GAGCATGAAAGATCTTTTAT+TGG - chr5_3:43538722-43538741 Msa0813050:intron 30.0%
! CTTTTATTGGTAAACCTTAG+GGG - chr5_3:43538735-43538754 Msa0813050:intron 30.0%
AATTGTGCAGGTAATGTATT+AGG - chr5_3:43538770-43538789 Msa0813050:intron 30.0%
ATGTACTTGAAGTGAATATC+CGG + chr5_3:43538978-43538997 None:intergenic 30.0%
! ACATCGAAAGGTAAAGTTTT+TGG - chr5_3:43538994-43539013 Msa0813050:CDS 30.0%
!!! AAAGGTAAAGTTTTTGGTTG+CGG - chr5_3:43539000-43539019 Msa0813050:CDS 30.0%
ACAAATTCTGCTATAGTTGT+TGG - chr5_3:43539106-43539125 Msa0813050:intron 30.0%
CAAATTCTGCTATAGTTGTT+GGG - chr5_3:43539107-43539126 Msa0813050:intron 30.0%
TCTTATTCCCATTGAATCAT+TGG - chr5_3:43539164-43539183 Msa0813050:intron 30.0%
TCTTCAACCAATGATTCAAT+GGG + chr5_3:43539174-43539193 None:intergenic 30.0%
TTCTTCAACCAATGATTCAA+TGG + chr5_3:43539175-43539194 None:intergenic 30.0%
!!! TCATTTTAGTTTTTCTGTGC+AGG - chr5_3:43539263-43539282 Msa0813050:intron 30.0%
!! GATTGAACATATTTTGAGTG+AGG - chr5_3:43539309-43539328 Msa0813050:intron 30.0%
AAGGAGCTTAATCAACTAAT+GGG + chr5_3:43539397-43539416 None:intergenic 30.0%
AAGCTTCAATTTGCCAATTT+AGG - chr5_3:43539449-43539468 Msa0813050:intron 30.0%
AGCTTCAATTTGCCAATTTA+GGG - chr5_3:43539450-43539469 Msa0813050:intron 30.0%
GAACGAAAGTAAATTGTTTC+TGG + chr5_3:43539537-43539556 None:intergenic 30.0%
TTTCGTTCACATGATGTATT+TGG - chr5_3:43539549-43539568 Msa0813050:intron 30.0%
CAACCTGTACATTTAAAAGA+TGG + chr5_3:43539618-43539637 None:intergenic 30.0%
ATAGGTAATGAACAGTTAGA+TGG - chr5_3:43539638-43539657 Msa0813050:CDS 30.0%
TAGGTAATGAACAGTTAGAT+GGG - chr5_3:43539639-43539658 Msa0813050:CDS 30.0%
ATCATTAGGTACGTTTGTTC+CGG + chr5_3:43536118-43536137 None:intergenic 35.0%
!! TGATGATCAGACTTGCTAAT+GGG + chr5_3:43536216-43536235 None:intergenic 35.0%
!! TTGATGATCAGACTTGCTAA+TGG + chr5_3:43536217-43536236 None:intergenic 35.0%
ATTAGCAAGTCTGATCATCA+AGG - chr5_3:43536216-43536235 Msa0813050:three_prime_UTR 35.0%
CTTTGTTGGATCATTTAGGT+TGG - chr5_3:43536546-43536565 Msa0813050:intron 35.0%
!! GATCATTTAGGTTGGCAAAA+AGG - chr5_3:43536554-43536573 Msa0813050:intron 35.0%
!! TCATGTTTTTGTGCACTCAA+TGG - chr5_3:43536578-43536597 Msa0813050:intron 35.0%
!! CATGTTTTTGTGCACTCAAT+GGG - chr5_3:43536579-43536598 Msa0813050:intron 35.0%
!!! AACCATTGCTGCTATTTTAC+AGG + chr5_3:43536755-43536774 None:intergenic 35.0%
ATAAAAGGGAGATATACCTC+TGG + chr5_3:43536835-43536854 None:intergenic 35.0%
CAAACTTAGTTTAGGTCGAA+TGG - chr5_3:43536968-43536987 Msa0813050:intron 35.0%
AAGTTTAATCCTTCACAGGT+TGG + chr5_3:43537193-43537212 None:intergenic 35.0%
TGGTTGCATATTTGATCTCT+AGG - chr5_3:43537218-43537237 Msa0813050:intron 35.0%
ATATGGTGATAAGAAGATGC+AGG + chr5_3:43537317-43537336 None:intergenic 35.0%
TGTGTATACAGCTCTTCATT+AGG - chr5_3:43537512-43537531 Msa0813050:intron 35.0%
TATACAGCTCTTCATTAGGA+AGG - chr5_3:43537516-43537535 Msa0813050:intron 35.0%
TCGTGGATGATCCAAATATT+TGG - chr5_3:43537781-43537800 Msa0813050:three_prime_UTR 35.0%
CGTGGATGATCCAAATATTT+GGG - chr5_3:43537782-43537801 Msa0813050:three_prime_UTR 35.0%
GTGGATGATCCAAATATTTG+GGG - chr5_3:43537783-43537802 Msa0813050:three_prime_UTR 35.0%
CAATCTTCTACAACCATTAC+AGG + chr5_3:43538046-43538065 None:intergenic 35.0%
ACAGTGCAGTAACAATTTCT+TGG - chr5_3:43538310-43538329 Msa0813050:CDS 35.0%
! TTTCTTGGTAGTCTCTTTGT+AGG - chr5_3:43538325-43538344 Msa0813050:CDS 35.0%
!! CTTTCTCTTTTGGCTATCAT+AGG - chr5_3:43538392-43538411 Msa0813050:CDS 35.0%
TTGGCTATCATAGGTAAGTT+TGG - chr5_3:43538401-43538420 Msa0813050:CDS 35.0%
!! TGGGGCATTGAAATATGTAA+TGG - chr5_3:43538485-43538504 Msa0813050:intron 35.0%
AACTTAAATAGCCCTAATGG+AGG + chr5_3:43538573-43538592 None:intergenic 35.0%
! AATTCGTTGGAGTGATTTTC+AGG - chr5_3:43538653-43538672 Msa0813050:intron 35.0%
! ACTTGCTGCTCAAAATGAAA+AGG + chr5_3:43538818-43538837 None:intergenic 35.0%
ATTAAAGCAGCTGCTAAAAC+TGG - chr5_3:43538866-43538885 Msa0813050:intron 35.0%
AATGTGTAGAGAATGTGACA+TGG - chr5_3:43538896-43538915 Msa0813050:intron 35.0%
ATGTGTAGAGAATGTGACAT+GGG - chr5_3:43538897-43538916 Msa0813050:intron 35.0%
TATGATAAAAGCCAAGCTTC+CGG - chr5_3:43538956-43538975 Msa0813050:intron 35.0%
TTCACTTCAAGTACATCGAA+AGG - chr5_3:43538982-43539001 Msa0813050:CDS 35.0%
AGGAGCTTAATCAACTAATG+GGG + chr5_3:43539396-43539415 None:intergenic 35.0%
GAAGGAGCTTAATCAACTAA+TGG + chr5_3:43539398-43539417 None:intergenic 35.0%
CAAATTGAAGCTTCAACCAA+AGG + chr5_3:43539442-43539461 None:intergenic 35.0%
!! CATAAGAAAGCACCCTAAAT+TGG + chr5_3:43539465-43539484 None:intergenic 35.0%
! GGGTTTGAATATTTTGTGCA+AGG - chr5_3:43539659-43539678 Msa0813050:CDS 35.0%
!!! GAAAACGTCTTTTGGAGTAG+AGG - chr5_3:43536141-43536160 Msa0813050:three_prime_UTR 40.0%
ACAAACAAAGATCACGGCAA+AGG - chr5_3:43536514-43536533 Msa0813050:intron 40.0%
AGCCTGTAAAATAGCAGCAA+TGG - chr5_3:43536750-43536769 Msa0813050:intron 40.0%
AAATCCGAGAGAACTCTATC+AGG + chr5_3:43536778-43536797 None:intergenic 40.0%
!! TCGGATTTGCTATATGCAAC+AGG - chr5_3:43536790-43536809 Msa0813050:intron 40.0%
!! GATTTGCTATATGCAACAGG+TGG - chr5_3:43536793-43536812 Msa0813050:intron 40.0%
! TTTCTCAGTTTTCGTGTCTG+TGG - chr5_3:43537377-43537396 Msa0813050:intron 40.0%
! TTCTCAGTTTTCGTGTCTGT+GGG - chr5_3:43537378-43537397 Msa0813050:intron 40.0%
TAGAAGCTCAATCAACTCAC+GGG + chr5_3:43537667-43537686 None:intergenic 40.0%
GTAGAAGCTCAATCAACTCA+CGG + chr5_3:43537668-43537687 None:intergenic 40.0%
GAAGAATGGCCCCAAATATT+TGG + chr5_3:43537795-43537814 None:intergenic 40.0%
TCTTGAAAACATGCAGGTGA+TGG - chr5_3:43537868-43537887 Msa0813050:three_prime_UTR 40.0%
! TGGAATTACGCAGTTGATGT+TGG - chr5_3:43538198-43538217 Msa0813050:intron 40.0%
!! GATGTTGGTGTTTTTGCTTC+TGG - chr5_3:43538213-43538232 Msa0813050:intron 40.0%
TACCAATTCAGGTGGAAATG+TGG + chr5_3:43538243-43538262 None:intergenic 40.0%
ACATTTCCACCTGAATTGGT+AGG - chr5_3:43538242-43538261 Msa0813050:intron 40.0%
ATTAGAGAGCCTACCAATTC+AGG + chr5_3:43538254-43538273 None:intergenic 40.0%
CCAAAGTCAAGAGACATTAG+AGG + chr5_3:43538356-43538375 None:intergenic 40.0%
CCTCTAATGTCTCTTGACTT+TGG - chr5_3:43538353-43538372 Msa0813050:CDS 40.0%
TGAAAAGGCTTTCCTCCATT+AGG - chr5_3:43538558-43538577 Msa0813050:intron 40.0%
GAAAAGGCTTTCCTCCATTA+GGG - chr5_3:43538559-43538578 Msa0813050:intron 40.0%
CAGTTCTCATTCTTCGGAAA+GGG + chr5_3:43538700-43538719 None:intergenic 40.0%
TGGTTGAAGAATGTGAGAAG+AGG - chr5_3:43539184-43539203 Msa0813050:intron 40.0%
GGAGCTTAATCAACTAATGG+GGG + chr5_3:43539395-43539414 None:intergenic 40.0%
AATTGTGCAGCACACATTGA+AGG + chr5_3:43539416-43539435 None:intergenic 40.0%
!!! AACGTCTTTTGGAGTAGAGG+AGG - chr5_3:43536144-43536163 Msa0813050:three_prime_UTR 45.0%
!!! CATGTTTTTGGGCACTCAAC+AGG - chr5_3:43536313-43536332 Msa0813050:three_prime_UTR 45.0%
!!! CATGTTTTTGGGCACTCAAC+AGG - chr5_3:43536313-43536332 Msa0813050:three_prime_UTR 45.0%
GGTTCCTGATAGAGTTCTCT+CGG - chr5_3:43536771-43536790 Msa0813050:intron 45.0%
!! CACAGGTTGGTCAAAGAGTT+TGG + chr5_3:43537180-43537199 None:intergenic 45.0%
ACTCTTTGACCAACCTGTGA+AGG - chr5_3:43537181-43537200 Msa0813050:intron 45.0%
CATCGACAGAACAACAACTC+CGG - chr5_3:43537410-43537429 Msa0813050:three_prime_UTR 45.0%
! CAACTCCGGCATTTTCTCAT+AGG - chr5_3:43537424-43537443 Msa0813050:three_prime_UTR 45.0%
GGTTGCCTATGAGAAAATGC+CGG + chr5_3:43537432-43537451 None:intergenic 45.0%
CTTGGTTCAAGCTATTAGCC+AGG - chr5_3:43537489-43537508 Msa0813050:intron 45.0%
TGAAGAGCTGTATACACACC+TGG + chr5_3:43537510-43537529 None:intergenic 45.0%
AGAAGCTCAATCAACTCACG+GGG + chr5_3:43537666-43537685 None:intergenic 45.0%
TTGCATCGCTCCTTCAATGT+TGG + chr5_3:43538136-43538155 None:intergenic 45.0%
AACATTGAAGGAGCGATGCA+AGG - chr5_3:43538135-43538154 Msa0813050:intron 45.0%
TGCCACATTTCCACCTGAAT+TGG - chr5_3:43538238-43538257 Msa0813050:intron 45.0%
CCAGTTCTCATTCTTCGGAA+AGG + chr5_3:43538701-43538720 None:intergenic 45.0%
CCTTTCCGAAGAATGAGAAC+TGG - chr5_3:43538698-43538717 Msa0813050:intron 45.0%
GCTCTCCAGTTCTCATTCTT+CGG + chr5_3:43538706-43538725 None:intergenic 45.0%
GAAGTGAATATCCGGAAGCT+TGG + chr5_3:43538970-43538989 None:intergenic 45.0%
CAAAAGGACATGCACATGCA+GGG + chr5_3:43539229-43539248 None:intergenic 45.0%
TCAAAAGGACATGCACATGC+AGG + chr5_3:43539230-43539249 None:intergenic 45.0%
!! TGGTCAAAGAGTTTGGTGCG+TGG + chr5_3:43537173-43537192 None:intergenic 50.0%
TCAGAACCTCGAGAGAAGTG+AGG + chr5_3:43538100-43538119 None:intergenic 50.0%
ATTGAAGGAGCGATGCAAGG+AGG - chr5_3:43538138-43538157 Msa0813050:intron 50.0%
AGCGATGCAAGGAGGAAACA+TGG - chr5_3:43538146-43538165 Msa0813050:intron 50.0%
GCGATGCAAGGAGGAAACAT+GGG - chr5_3:43538147-43538166 Msa0813050:intron 50.0%
ATGCAAGGAGGAAACATGGG+AGG - chr5_3:43538150-43538169 Msa0813050:intron 50.0%
AGAGAGCCTACCAATTCAGG+TGG + chr5_3:43538251-43538270 None:intergenic 50.0%
ATGTGTGTAAGGCTCTGCAG+TGG - chr5_3:43539347-43539366 Msa0813050:intron 50.0%
GTGCTGCACAATTCTGCCTT+TGG - chr5_3:43539423-43539442 Msa0813050:intron 50.0%
AGAGGAGGTGACAGTGAGTG+CGG - chr5_3:43536159-43536178 Msa0813050:three_prime_UTR 55.0%
AGTGAGTGCGGTGGTAATCG+TGG - chr5_3:43536171-43536190 Msa0813050:three_prime_UTR 55.0%
ACCACACCTCACTTCTCTCG+AGG - chr5_3:43538091-43538110 Msa0813050:intron 55.0%
ACCTCGAGAGAAGTGAGGTG+TGG + chr5_3:43538095-43538114 None:intergenic 55.0%
AGGAGGAAACATGGGAGGAC+CGG - chr5_3:43538155-43538174 Msa0813050:intron 55.0%
TGCGGTGGTAATCGTGGCGT+GGG - chr5_3:43536177-43536196 Msa0813050:three_prime_UTR 60.0%
GTGGTAATCGTGGCGTGGGT+CGG - chr5_3:43536181-43536200 Msa0813050:three_prime_UTR 60.0%
GGAGGAAACATGGGAGGACC+GGG - chr5_3:43538156-43538175 Msa0813050:intron 60.0%
GGAGGTGACAGTGAGTGCGG+TGG - chr5_3:43536162-43536181 Msa0813050:three_prime_UTR 65.0%
GTGCGGTGGTAATCGTGGCG+TGG - chr5_3:43536176-43536195 Msa0813050:three_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 43536102 43539695 43536102 ID=Msa0813050;Name=Msa0813050
chr5_3 mRNA 43536102 43539695 43536102 ID=Msa0813050-mRNA-1;Parent=Msa0813050;Name=Msa0813050-mRNA-1;_AED=0.18;_eAED=0.25;_QI=0|0.75|0.88|1|0.25|0.33|9|1211|124
chr5_3 exon 43536102 43536512 43536102 ID=Msa0813050-mRNA-1:exon:13410;Parent=Msa0813050-mRNA-1
chr5_3 exon 43536592 43536700 43536592 ID=Msa0813050-mRNA-1:exon:13409;Parent=Msa0813050-mRNA-1
chr5_3 exon 43536794 43536921 43536794 ID=Msa0813050-mRNA-1:exon:13408;Parent=Msa0813050-mRNA-1
chr5_3 exon 43537018 43537122 43537018 ID=Msa0813050-mRNA-1:exon:13407;Parent=Msa0813050-mRNA-1
chr5_3 exon 43537384 43537461 43537384 ID=Msa0813050-mRNA-1:exon:13406;Parent=Msa0813050-mRNA-1
chr5_3 exon 43537538 43537913 43537538 ID=Msa0813050-mRNA-1:exon:13405;Parent=Msa0813050-mRNA-1
chr5_3 exon 43538287 43538431 43538287 ID=Msa0813050-mRNA-1:exon:13404;Parent=Msa0813050-mRNA-1
chr5_3 exon 43538960 43539057 43538960 ID=Msa0813050-mRNA-1:exon:13403;Parent=Msa0813050-mRNA-1
chr5_3 exon 43539560 43539695 43539560 ID=Msa0813050-mRNA-1:exon:13402;Parent=Msa0813050-mRNA-1
chr5_3 CDS 43539560 43539695 43539560 ID=Msa0813050-mRNA-1:cds;Parent=Msa0813050-mRNA-1
chr5_3 CDS 43538960 43539057 43538960 ID=Msa0813050-mRNA-1:cds;Parent=Msa0813050-mRNA-1
chr5_3 CDS 43538291 43538431 43538291 ID=Msa0813050-mRNA-1:cds;Parent=Msa0813050-mRNA-1
chr5_3 three_prime_UTR 43538287 43538290 43538287 ID=Msa0813050-mRNA-1:three_prime_utr;Parent=Msa0813050-mRNA-1
chr5_3 three_prime_UTR 43537538 43537913 43537538 ID=Msa0813050-mRNA-1:three_prime_utr;Parent=Msa0813050-mRNA-1
chr5_3 three_prime_UTR 43537384 43537461 43537384 ID=Msa0813050-mRNA-1:three_prime_utr;Parent=Msa0813050-mRNA-1
chr5_3 three_prime_UTR 43537018 43537122 43537018 ID=Msa0813050-mRNA-1:three_prime_utr;Parent=Msa0813050-mRNA-1
chr5_3 three_prime_UTR 43536794 43536921 43536794 ID=Msa0813050-mRNA-1:three_prime_utr;Parent=Msa0813050-mRNA-1
chr5_3 three_prime_UTR 43536592 43536700 43536592 ID=Msa0813050-mRNA-1:three_prime_utr;Parent=Msa0813050-mRNA-1
chr5_3 three_prime_UTR 43536102 43536512 43536102 ID=Msa0813050-mRNA-1:three_prime_utr;Parent=Msa0813050-mRNA-1
Gene Sequence

>Msa0813050

ATGACAGGATTAACCGGAACAAACGTACCTAATGATGAAGAAAACGTCTTTTGGAGTAGAGGAGGTGACAGTGAGTGCGGTGGTAATCGTGGCGTGGGTCGGAGCTCTGTGCCCATTAGCAAGTCTGATCATCAAGGATCTATGATAGCCTGTAAAATAGCAGCAATGGTTCCTGATAGAGTTCTCTCGGATTTGCTATATGCAACAGGTGGATGTTTTCAATGTTTTCCAGAGGAATCACTTGCTTTCTCAGTTTTCGTGTCTGTGGGTAAAATTATCATCGACAGAACAACAACTCCGGCATTTTCTCATAGGCAACCTATTATGCTGTGTTTGTTAATGTTACAAATCAAAATTCTTGGTTCAAGCTATTAG

Protein sequence

>Msa0813050

MTGLTGTNVPNDEENVFWSRGGDSECGGNRGVGRSSVPISKSDHQGSMIACKIAAMVPDRVLSDLLYATGGCFQCFPEESLAFSVFVSVGKIIIDRTTTPAFSHRQPIMLCLLMLQIKILGSSY*