Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0813050 | AES98664.2 | 55.046 | 109 | 40 | 2 | 1 | 100 | 952 | 1060 | 1.97e-26 | 114 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0813050 | G7JZJ5 | 55.046 | 109 | 40 | 2 | 1 | 100 | 952 | 1060 | 9.41e-27 | 114 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0813050 | Msa0853710 | 0.837215 | 5.928437e-57 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0813050 | MtrunA17_Chr1g0146881 | 51.754 | 114 | 19 | 3 | 1 | 78 | 62 | 175 | 4.90e-26 | 100 |
Msa0813050 | MtrunA17_Chr5g0430961 | 71.014 | 69 | 12 | 2 | 29 | 94 | 26 | 89 | 2.85e-23 | 86.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0813050 | AT5G53050.2 | 43.590 | 78 | 16 | 2 | 29 | 78 | 86 | 163 | 6.87e-11 | 58.5 |
Msa0813050 | AT5G53050.3 | 43.590 | 78 | 16 | 2 | 29 | 78 | 86 | 163 | 6.87e-11 | 58.5 |
Msa0813050 | AT5G53050.6 | 43.590 | 78 | 16 | 2 | 29 | 78 | 86 | 163 | 7.63e-11 | 58.2 |
Msa0813050 | AT5G53050.1 | 43.590 | 78 | 16 | 2 | 29 | 78 | 86 | 163 | 8.78e-11 | 58.2 |
Msa0813050 | AT5G53050.4 | 43.590 | 78 | 16 | 2 | 29 | 78 | 86 | 163 | 9.32e-11 | 58.2 |
Find 91 sgRNAs with CRISPR-Local
Find 212 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AAGCTTCAATTTGCCAATTT+AGG | 0.137831 | 5_3:-43536326 | Msa0813050:three_prime_UTR |
GAACGAAAGTAAATTGTTTC+TGG | 0.159554 | 5_3:+43536241 | None:intergenic |
TTTCGTTCACATGATGTATT+TGG | 0.173947 | 5_3:-43536226 | Msa0813050:three_prime_UTR |
TTTCATGTGTGAAATGTTTA+TGG | 0.221618 | 5_3:-43537882 | Msa0813050:three_prime_UTR |
CATAAGAAAGCACCCTAAAT+TGG | 0.243018 | 5_3:+43536313 | None:intergenic |
AAGATTGACATGCTATCTTT+AGG | 0.258884 | 5_3:-43537716 | Msa0813050:three_prime_UTR |
AGCTTCAATTTGCCAATTTA+GGG | 0.270290 | 5_3:-43536325 | Msa0813050:three_prime_UTR |
TGTTATGTGACTTTCTCTTT+TGG | 0.274538 | 5_3:-43537393 | Msa0813050:three_prime_UTR |
ATTAACAAACACAGCATAAT+AGG | 0.287942 | 5_3:+43538325 | None:intergenic |
GACAAGATTATCTCATATTC+TGG | 0.295042 | 5_3:-43537597 | Msa0813050:three_prime_UTR |
AGATTGACATGCTATCTTTA+GGG | 0.306134 | 5_3:-43537715 | Msa0813050:three_prime_UTR |
ATGATGAAGAAAACGTCTTT+TGG | 0.306216 | 5_3:-43539642 | Msa0813050:CDS |
ATGTTACAAATCAAAATTCT+TGG | 0.309777 | 5_3:-43538304 | Msa0813050:CDS |
TCTTATTCCCATTGAATCAT+TGG | 0.322394 | 5_3:-43536611 | Msa0813050:three_prime_UTR |
AATTCTGACTATTAGTGTTT+AGG | 0.326369 | 5_3:+43537832 | None:intergenic |
CAATCTTCTACAACCATTAC+AGG | 0.339805 | 5_3:+43537732 | None:intergenic |
ATTAAAGCAGCTGCTAAAAC+TGG | 0.345489 | 5_3:-43536909 | Msa0813050:intron |
ATTAGAGAGCCTACCAATTC+AGG | 0.345911 | 5_3:+43537524 | None:intergenic |
ACAAATTCTGCTATAGTTGT+TGG | 0.351617 | 5_3:-43536669 | Msa0813050:three_prime_UTR |
GTGCTGCACAATTCTGCCTT+TGG | 0.365777 | 5_3:-43536352 | Msa0813050:three_prime_UTR |
GAAGGAGCTTAATCAACTAA+TGG | 0.366961 | 5_3:+43536380 | None:intergenic |
AAGGAGCTTAATCAACTAAT+GGG | 0.369445 | 5_3:+43536381 | None:intergenic |
TTTCTTGGTAGTCTCTTTGT+AGG | 0.369841 | 5_3:-43537450 | Msa0813050:intron |
TGCCACATTTCCACCTGAAT+TGG | 0.386401 | 5_3:-43537537 | Msa0813050:intron |
CAGTTCTCATTCTTCGGAAA+GGG | 0.386986 | 5_3:+43537078 | None:intergenic |
ATAGGTAATGAACAGTTAGA+TGG | 0.396356 | 5_3:-43536137 | Msa0813050:three_prime_UTR |
TTCTTCAACCAATGATTCAA+TGG | 0.397516 | 5_3:+43536603 | None:intergenic |
AGGAGGAAACATGGGAGGAC+CGG | 0.406981 | 5_3:-43537620 | Msa0813050:three_prime_UTR |
TGATATATCTTTGCCTGTAA+TGG | 0.408199 | 5_3:-43537745 | Msa0813050:three_prime_UTR |
TTGATGATCAGACTTGCTAA+TGG | 0.408554 | 5_3:+43539561 | None:intergenic |
GCTCTCCAGTTCTCATTCTT+CGG | 0.411506 | 5_3:+43537072 | None:intergenic |
ATCATTAGGTACGTTTGTTC+CGG | 0.415070 | 5_3:+43539660 | None:intergenic |
AAATCCGAGAGAACTCTATC+AGG | 0.417095 | 5_3:+43539000 | None:intergenic |
CAAATTCTGCTATAGTTGTT+GGG | 0.422885 | 5_3:-43536668 | Msa0813050:three_prime_UTR |
CAAAGATATAAATGTGTGTA+AGG | 0.435730 | 5_3:-43536439 | Msa0813050:three_prime_UTR |
TAAACACTAATAGTCAGAAT+TGG | 0.436569 | 5_3:-43537830 | Msa0813050:three_prime_UTR |
CCAAAGTCAAGAGACATTAG+AGG | 0.440154 | 5_3:+43537422 | None:intergenic |
CCTCTAATGTCTCTTGACTT+TGG | 0.442600 | 5_3:-43537422 | Msa0813050:three_prime_UTR |
GTGGTAATCGTGGCGTGGGT+CGG | 0.444378 | 5_3:-43539594 | Msa0813050:CDS |
CCAGTTCTCATTCTTCGGAA+AGG | 0.445257 | 5_3:+43537077 | None:intergenic |
TATGATAAAAGCCAAGCTTC+CGG | 0.445918 | 5_3:-43536819 | Msa0813050:three_prime_UTR |
CGACAAATGACAGGATTAAC+CGG | 0.447546 | 5_3:-43539679 | None:intergenic |
TTCATTATCTCCAACATTGA+AGG | 0.455007 | 5_3:-43537652 | Msa0813050:three_prime_UTR |
TCGGATTTGCTATATGCAAC+AGG | 0.456260 | 5_3:-43538985 | Msa0813050:CDS |
CCTTTCCGAAGAATGAGAAC+TGG | 0.464369 | 5_3:-43537077 | Msa0813050:three_prime_UTR |
TGATGATCAGACTTGCTAAT+GGG | 0.468201 | 5_3:+43539562 | None:intergenic |
TCTTCAACCAATGATTCAAT+GGG | 0.477181 | 5_3:+43536604 | None:intergenic |
TTGCATCGCTCCTTCAATGT+TGG | 0.479367 | 5_3:+43537642 | None:intergenic |
TGTGCAAGGTGAGTTATTTG+AGG | 0.481165 | 5_3:-43536102 | Msa0813050:three_prime_UTR |
GGAGGAAACATGGGAGGACC+GGG | 0.482537 | 5_3:-43537619 | Msa0813050:three_prime_UTR |
ATGTACTTGAAGTGAATATC+CGG | 0.491639 | 5_3:+43536800 | None:intergenic |
AATTGTGCAGCACACATTGA+AGG | 0.500321 | 5_3:+43536362 | None:intergenic |
TTATTTGTATATTTCCCCTA+AGG | 0.501306 | 5_3:+43537026 | None:intergenic |
CAACCTGTACATTTAAAAGA+TGG | 0.502329 | 5_3:+43536160 | None:intergenic |
AAATATACAAATAATTGTGC+AGG | 0.513258 | 5_3:-43537017 | Msa0813050:intron |
TAGGTAATGAACAGTTAGAT+GGG | 0.514468 | 5_3:-43536136 | Msa0813050:three_prime_UTR |
CTTGGTTCAAGCTATTAGCC+AGG | 0.517123 | 5_3:-43538286 | Msa0813050:intron |
TGCGGTGGTAATCGTGGCGT+GGG | 0.526133 | 5_3:-43539598 | Msa0813050:CDS |
GGTTCCTGATAGAGTTCTCT+CGG | 0.530158 | 5_3:-43539004 | Msa0813050:CDS |
GAAGTGAATATCCGGAAGCT+TGG | 0.545117 | 5_3:+43536808 | None:intergenic |
CAAATTGAAGCTTCAACCAA+AGG | 0.545380 | 5_3:+43536336 | None:intergenic |
TGAAATGTTTATGGAAGAGT+TGG | 0.545525 | 5_3:-43537873 | Msa0813050:three_prime_UTR |
AGCCTGTAAAATAGCAGCAA+TGG | 0.549672 | 5_3:-43539025 | Msa0813050:CDS |
TGGAATTACGCAGTTGATGT+TGG | 0.550274 | 5_3:-43537577 | Msa0813050:three_prime_UTR |
ATTAGCAAGTCTGATCATCA+AGG | 0.555363 | 5_3:-43539559 | Msa0813050:intron |
AACATTGAAGGAGCGATGCA+AGG | 0.567694 | 5_3:-43537640 | Msa0813050:three_prime_UTR |
AGCGATGCAAGGAGGAAACA+TGG | 0.570383 | 5_3:-43537629 | Msa0813050:three_prime_UTR |
GGGTCGGGTCGACAAATGAC+AGG | 0.588837 | 5_3:-43539688 | None:intergenic |
TTCACTTCAAGTACATCGAA+AGG | 0.595217 | 5_3:-43536793 | Msa0813050:intron |
TACCAATTCAGGTGGAAATG+TGG | 0.602730 | 5_3:+43537535 | None:intergenic |
AGGAGCTTAATCAACTAATG+GGG | 0.606994 | 5_3:+43536382 | None:intergenic |
ACCACACCTCACTTCTCTCG+AGG | 0.618395 | 5_3:-43537684 | Msa0813050:three_prime_UTR |
AATATGAGATAATCTTGTCC+CGG | 0.622433 | 5_3:+43537601 | None:intergenic |
AGAGGAGGTGACAGTGAGTG+CGG | 0.629439 | 5_3:-43539616 | Msa0813050:CDS |
GGTTGCCTATGAGAAAATGC+CGG | 0.633045 | 5_3:+43538346 | None:intergenic |
TGGTTGAAGAATGTGAGAAG+AGG | 0.636685 | 5_3:-43536591 | Msa0813050:intron |
AAAGAGAAAGTCACATAACA+AGG | 0.638639 | 5_3:+43537396 | None:intergenic |
GGAGCTTAATCAACTAATGG+GGG | 0.644806 | 5_3:+43536383 | None:intergenic |
AGTGAGTGCGGTGGTAATCG+TGG | 0.646803 | 5_3:-43539604 | Msa0813050:CDS |
AGAGAGCCTACCAATTCAGG+TGG | 0.651833 | 5_3:+43537527 | None:intergenic |
GCGATGCAAGGAGGAAACAT+GGG | 0.659072 | 5_3:-43537628 | Msa0813050:three_prime_UTR |
ACCTCGAGAGAAGTGAGGTG+TGG | 0.661046 | 5_3:+43537683 | None:intergenic |
CATCGACAGAACAACAACTC+CGG | 0.661057 | 5_3:-43538365 | Msa0813050:CDS |
ATGTGTAGAGAATGTGACAT+GGG | 0.663555 | 5_3:-43536878 | Msa0813050:three_prime_UTR |
GGAGGTGACAGTGAGTGCGG+TGG | 0.679287 | 5_3:-43539613 | Msa0813050:CDS |
GATTTGCTATATGCAACAGG+TGG | 0.679981 | 5_3:-43538982 | Msa0813050:CDS |
TCAGAACCTCGAGAGAAGTG+AGG | 0.690287 | 5_3:+43537678 | None:intergenic |
ATGTGTGTAAGGCTCTGCAG+TGG | 0.692522 | 5_3:-43536428 | Msa0813050:three_prime_UTR |
ATGCAAGGAGGAAACATGGG+AGG | 0.695533 | 5_3:-43537625 | Msa0813050:three_prime_UTR |
ATTGAAGGAGCGATGCAAGG+AGG | 0.716412 | 5_3:-43537637 | Msa0813050:three_prime_UTR |
AATGTGTAGAGAATGTGACA+TGG | 0.746081 | 5_3:-43536879 | Msa0813050:three_prime_UTR |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATTTAAATTAGAAAGTAATA+TGG | + | chr5_3:43537334-43537353 | None:intergenic | 10.0% |
!! | CAATATATGTTAAATATTAT+AGG | + | chr5_3:43537822-43537841 | None:intergenic | 10.0% |
!!! | TATATTGTTTTTCATGTTTT+TGG | - | chr5_3:43536301-43536320 | Msa0813050:three_prime_UTR | 15.0% |
!!! | ATATTGTTTTTCATGTTTTT+GGG | - | chr5_3:43536302-43536321 | Msa0813050:three_prime_UTR | 15.0% |
!!! | TATATTGTTTTTCATGTTTT+TGG | - | chr5_3:43536301-43536320 | Msa0813050:three_prime_UTR | 15.0% |
!!! | ATATTGTTTTTCATGTTTTT+GGG | - | chr5_3:43536302-43536321 | Msa0813050:three_prime_UTR | 15.0% |
!!! | AGTTTTTGAATGTAATTATA+TGG | - | chr5_3:43536446-43536465 | Msa0813050:three_prime_UTR | 15.0% |
!!! | GTTTTTGAATGTAATTATAT+GGG | - | chr5_3:43536447-43536466 | Msa0813050:three_prime_UTR | 15.0% |
!! | TTTAATTACAAACTTAGTTT+AGG | - | chr5_3:43536960-43536979 | Msa0813050:intron | 15.0% |
!! | TAATTTAAATTTCTATATGC+AGG | - | chr5_3:43537344-43537363 | Msa0813050:intron | 15.0% |
!! | GAAATATAATCTTAGAAAAA+TGG | + | chr5_3:43539067-43539086 | None:intergenic | 15.0% |
!! | ACTAAAATGAGAAAATAATA+TGG | + | chr5_3:43539253-43539272 | None:intergenic | 15.0% |
!! | TGATTTAGTTAAAATTCAGA+TGG | - | chr5_3:43536643-43536662 | Msa0813050:three_prime_UTR | 20.0% |
!! | ACTTAACCTAATAAAATCTT+AGG | + | chr5_3:43536674-43536693 | None:intergenic | 20.0% |
!! | CATTTCAGAGAATTATAAAA+GGG | + | chr5_3:43536849-43536868 | None:intergenic | 20.0% |
!! | ACATTTCAGAGAATTATAAA+AGG | + | chr5_3:43536850-43536869 | None:intergenic | 20.0% |
!! | TTAAGATGTTAACTACATTA+AGG | - | chr5_3:43536921-43536940 | Msa0813050:intron | 20.0% |
!!! | AATTTCTTAGTACTGATTTT+AGG | - | chr5_3:43537012-43537031 | Msa0813050:intron | 20.0% |
!!! | ACATTATTTGCAGATTTTTA+AGG | - | chr5_3:43537128-43537147 | Msa0813050:intron | 20.0% |
!! | ATGTTACAAATCAAAATTCT+TGG | - | chr5_3:43537471-43537490 | Msa0813050:intron | 20.0% |
!!! | ATTTTTCACAACATGTTTAT+CGG | + | chr5_3:43537599-43537618 | None:intergenic | 20.0% |
!! | TAAACATGTTGTGAAAAATA+TGG | - | chr5_3:43537600-43537619 | Msa0813050:three_prime_UTR | 20.0% |
!!! | GATTTTGTTAAGCATATTTT+AGG | - | chr5_3:43537969-43537988 | Msa0813050:intron | 20.0% |
!! | ACAGTAAAAAAGAATAAAGA+CGG | + | chr5_3:43538283-43538302 | None:intergenic | 20.0% |
!!! | TGAATATCCCTTTTTTATTT+GGG | - | chr5_3:43538466-43538485 | Msa0813050:intron | 20.0% |
!! | AAATATACAAATAATTGTGC+AGG | - | chr5_3:43538758-43538777 | Msa0813050:intron | 20.0% |
!! | CTTATTCATACCAAAAATAA+TGG | - | chr5_3:43539578-43539597 | Msa0813050:CDS | 20.0% |
! | ATTACTTTGTTGGATCATTT+AGG | - | chr5_3:43536542-43536561 | Msa0813050:intron | 25.0% |
!! | GTTTGTCCTAAGATTTTATT+AGG | - | chr5_3:43536665-43536684 | Msa0813050:three_prime_UTR | 25.0% |
! | TTATATTTGCCTATTGAAAC+AGG | - | chr5_3:43536718-43536737 | Msa0813050:intron | 25.0% |
! | CTCAACTAAATTTCTTCTAA+AGG | + | chr5_3:43537042-43537061 | None:intergenic | 25.0% |
! | AGTTGAGAATTATCTTTCTA+TGG | - | chr5_3:43537055-43537074 | Msa0813050:three_prime_UTR | 25.0% |
!!! | TGAAGGATTAAACTTTTTCT+TGG | - | chr5_3:43537198-43537217 | Msa0813050:intron | 25.0% |
! | ATTAACAAACACAGCATAAT+AGG | + | chr5_3:43537453-43537472 | None:intergenic | 25.0% |
!!! | AAACTTCAATCTGCTATTTT+TGG | - | chr5_3:43537717-43537736 | Msa0813050:three_prime_UTR | 25.0% |
!!! | AATATTTTGAGATATGGAGT+CGG | + | chr5_3:43537754-43537773 | None:intergenic | 25.0% |
!!! | AAGCTGAATATTTTGAGATA+TGG | + | chr5_3:43537760-43537779 | None:intergenic | 25.0% |
! | ATATTATAGGAACTGAAGAA+TGG | + | chr5_3:43537809-43537828 | None:intergenic | 25.0% |
!! | ATATTTTCTTGAAAACATGC+AGG | - | chr5_3:43537862-43537881 | Msa0813050:three_prime_UTR | 25.0% |
! | TTTCATGTGTGAAATGTTTA+TGG | - | chr5_3:43537893-43537912 | Msa0813050:three_prime_UTR | 25.0% |
! | AATTCTGACTATTAGTGTTT+AGG | + | chr5_3:43537946-43537965 | None:intergenic | 25.0% |
! | TAAACACTAATAGTCAGAAT+TGG | - | chr5_3:43537945-43537964 | Msa0813050:intron | 25.0% |
! | TAAAAAAGAATAAAGACGGA+GGG | + | chr5_3:43538279-43538298 | None:intergenic | 25.0% |
! | CAAATAAAAAAGGGATATTC+AGG | + | chr5_3:43538467-43538486 | None:intergenic | 25.0% |
!!! | CTGAATATCCCTTTTTTATT+TGG | - | chr5_3:43538465-43538484 | Msa0813050:intron | 25.0% |
!!! | GAATATCCCTTTTTTATTTG+GGG | - | chr5_3:43538467-43538486 | Msa0813050:intron | 25.0% |
! | TTTCACAAAGTTGAGAAATA+TGG | + | chr5_3:43538543-43538562 | None:intergenic | 25.0% |
! | TATTTCTCAACTTTGTGAAA+AGG | - | chr5_3:43538543-43538562 | Msa0813050:intron | 25.0% |
!! | ATCTTTTATTGGTAAACCTT+AGG | - | chr5_3:43538733-43538752 | Msa0813050:intron | 25.0% |
!! | TCTTTTATTGGTAAACCTTA+GGG | - | chr5_3:43538734-43538753 | Msa0813050:intron | 25.0% |
! | TTATTTGTATATTTCCCCTA+AGG | + | chr5_3:43538752-43538771 | None:intergenic | 25.0% |
! | ATGTAATTGAAGTGAATATC+AGG | + | chr5_3:43538848-43538867 | None:intergenic | 25.0% |
! | AGATTATATTTCTTGCTTCT+AGG | - | chr5_3:43539075-43539094 | Msa0813050:intron | 25.0% |
! | GAGAAAATAATATGGTCAAA+AGG | + | chr5_3:43539245-43539264 | None:intergenic | 25.0% |
!!! | ATTGAACATATTTTGAGTGA+GGG | - | chr5_3:43539310-43539329 | Msa0813050:intron | 25.0% |
! | CAAAGATATAAATGTGTGTA+AGG | - | chr5_3:43539336-43539355 | Msa0813050:intron | 25.0% |
!! | CTAAACTGAACCATTATTTT+TGG | + | chr5_3:43539591-43539610 | None:intergenic | 25.0% |
!! | TTACCATCTTTTAAATGTAC+AGG | - | chr5_3:43539612-43539631 | Msa0813050:CDS | 25.0% |
!!! | TTTTAAATGTACAGGTTGAT+AGG | - | chr5_3:43539620-43539639 | Msa0813050:CDS | 25.0% |
! | AAGACGTTTTCTTCATCATT+AGG | + | chr5_3:43536132-43536151 | None:intergenic | 30.0% |
! | ATGATGAAGAAAACGTCTTT+TGG | - | chr5_3:43536133-43536152 | Msa0813050:three_prime_UTR | 30.0% |
ATGTCATAGATATGAAGTGT+TGG | - | chr5_3:43536489-43536508 | Msa0813050:three_prime_UTR | 30.0% | |
TTGGATACAAACAAAGATCA+CGG | - | chr5_3:43536508-43536527 | Msa0813050:intron | 30.0% | |
AAAGGATGCAATTACTTTGT+TGG | - | chr5_3:43536532-43536551 | Msa0813050:intron | 30.0% | |
ATCATAGATCCTGTTTCAAT+AGG | + | chr5_3:43536730-43536749 | None:intergenic | 30.0% | |
! | ATGTTTTCAATGTTTTCCAG+AGG | - | chr5_3:43536816-43536835 | Msa0813050:three_prime_UTR | 30.0% |
!! | TCGTAGTACTGAAATTTTGT+CGG | - | chr5_3:43537104-43537123 | Msa0813050:intron | 30.0% |
GAAAAAGTTTAATCCTTCAC+AGG | + | chr5_3:43537197-43537216 | None:intergenic | 30.0% | |
!! | ACTTCTTCTAGAGTCAATAT+GGG | + | chr5_3:43537272-43537291 | None:intergenic | 30.0% |
!! | AACTTCTTCTAGAGTCAATA+TGG | + | chr5_3:43537273-43537292 | None:intergenic | 30.0% |
!!! | ATATTTTGAGATATGGAGTC+GGG | + | chr5_3:43537753-43537772 | None:intergenic | 30.0% |
! | TCAAAATATTCAGCTTTTCG+TGG | - | chr5_3:43537764-43537783 | Msa0813050:three_prime_UTR | 30.0% |
TGAAATGTTTATGGAAGAGT+TGG | - | chr5_3:43537902-43537921 | Msa0813050:intron | 30.0% | |
TGATATATCTTTGCCTGTAA+TGG | - | chr5_3:43538030-43538049 | Msa0813050:intron | 30.0% | |
AAGATTGACATGCTATCTTT+AGG | - | chr5_3:43538059-43538078 | Msa0813050:intron | 30.0% | |
AGATTGACATGCTATCTTTA+GGG | - | chr5_3:43538060-43538079 | Msa0813050:intron | 30.0% | |
TTCATTATCTCCAACATTGA+AGG | - | chr5_3:43538123-43538142 | Msa0813050:intron | 30.0% | |
AATATGAGATAATCTTGTCC+CGG | + | chr5_3:43538177-43538196 | None:intergenic | 30.0% | |
GACAAGATTATCTCATATTC+TGG | - | chr5_3:43538178-43538197 | Msa0813050:intron | 30.0% | |
GTAAAAAAGAATAAAGACGG+AGG | + | chr5_3:43538280-43538299 | None:intergenic | 30.0% | |
AAAGAGAAAGTCACATAACA+AGG | + | chr5_3:43538382-43538401 | None:intergenic | 30.0% | |
! | TGTTATGTGACTTTCTCTTT+TGG | - | chr5_3:43538382-43538401 | Msa0813050:CDS | 30.0% |
TTACTGCACTATAAGAAGTA+AGG | + | chr5_3:43538439-43538458 | None:intergenic | 30.0% | |
TCAATGCCCCAAATAAAAAA+GGG | + | chr5_3:43538476-43538495 | None:intergenic | 30.0% | |
TTCAATGCCCCAAATAAAAA+AGG | + | chr5_3:43538477-43538496 | None:intergenic | 30.0% | |
ATCAACTTAAATAGCCCTAA+TGG | + | chr5_3:43538576-43538595 | None:intergenic | 30.0% | |
!! | ATTAGGGCTATTTAAGTTGA+TGG | - | chr5_3:43538575-43538594 | Msa0813050:intron | 30.0% |
CAAAACATTGTTGAATTCGT+TGG | - | chr5_3:43538640-43538659 | Msa0813050:intron | 30.0% | |
! | GAGCATGAAAGATCTTTTAT+TGG | - | chr5_3:43538722-43538741 | Msa0813050:intron | 30.0% |
! | CTTTTATTGGTAAACCTTAG+GGG | - | chr5_3:43538735-43538754 | Msa0813050:intron | 30.0% |
AATTGTGCAGGTAATGTATT+AGG | - | chr5_3:43538770-43538789 | Msa0813050:intron | 30.0% | |
ATGTACTTGAAGTGAATATC+CGG | + | chr5_3:43538978-43538997 | None:intergenic | 30.0% | |
! | ACATCGAAAGGTAAAGTTTT+TGG | - | chr5_3:43538994-43539013 | Msa0813050:CDS | 30.0% |
!!! | AAAGGTAAAGTTTTTGGTTG+CGG | - | chr5_3:43539000-43539019 | Msa0813050:CDS | 30.0% |
ACAAATTCTGCTATAGTTGT+TGG | - | chr5_3:43539106-43539125 | Msa0813050:intron | 30.0% | |
CAAATTCTGCTATAGTTGTT+GGG | - | chr5_3:43539107-43539126 | Msa0813050:intron | 30.0% | |
TCTTATTCCCATTGAATCAT+TGG | - | chr5_3:43539164-43539183 | Msa0813050:intron | 30.0% | |
TCTTCAACCAATGATTCAAT+GGG | + | chr5_3:43539174-43539193 | None:intergenic | 30.0% | |
TTCTTCAACCAATGATTCAA+TGG | + | chr5_3:43539175-43539194 | None:intergenic | 30.0% | |
!!! | TCATTTTAGTTTTTCTGTGC+AGG | - | chr5_3:43539263-43539282 | Msa0813050:intron | 30.0% |
!! | GATTGAACATATTTTGAGTG+AGG | - | chr5_3:43539309-43539328 | Msa0813050:intron | 30.0% |
AAGGAGCTTAATCAACTAAT+GGG | + | chr5_3:43539397-43539416 | None:intergenic | 30.0% | |
AAGCTTCAATTTGCCAATTT+AGG | - | chr5_3:43539449-43539468 | Msa0813050:intron | 30.0% | |
AGCTTCAATTTGCCAATTTA+GGG | - | chr5_3:43539450-43539469 | Msa0813050:intron | 30.0% | |
GAACGAAAGTAAATTGTTTC+TGG | + | chr5_3:43539537-43539556 | None:intergenic | 30.0% | |
TTTCGTTCACATGATGTATT+TGG | - | chr5_3:43539549-43539568 | Msa0813050:intron | 30.0% | |
CAACCTGTACATTTAAAAGA+TGG | + | chr5_3:43539618-43539637 | None:intergenic | 30.0% | |
ATAGGTAATGAACAGTTAGA+TGG | - | chr5_3:43539638-43539657 | Msa0813050:CDS | 30.0% | |
TAGGTAATGAACAGTTAGAT+GGG | - | chr5_3:43539639-43539658 | Msa0813050:CDS | 30.0% | |
ATCATTAGGTACGTTTGTTC+CGG | + | chr5_3:43536118-43536137 | None:intergenic | 35.0% | |
!! | TGATGATCAGACTTGCTAAT+GGG | + | chr5_3:43536216-43536235 | None:intergenic | 35.0% |
!! | TTGATGATCAGACTTGCTAA+TGG | + | chr5_3:43536217-43536236 | None:intergenic | 35.0% |
ATTAGCAAGTCTGATCATCA+AGG | - | chr5_3:43536216-43536235 | Msa0813050:three_prime_UTR | 35.0% | |
CTTTGTTGGATCATTTAGGT+TGG | - | chr5_3:43536546-43536565 | Msa0813050:intron | 35.0% | |
!! | GATCATTTAGGTTGGCAAAA+AGG | - | chr5_3:43536554-43536573 | Msa0813050:intron | 35.0% |
!! | TCATGTTTTTGTGCACTCAA+TGG | - | chr5_3:43536578-43536597 | Msa0813050:intron | 35.0% |
!! | CATGTTTTTGTGCACTCAAT+GGG | - | chr5_3:43536579-43536598 | Msa0813050:intron | 35.0% |
!!! | AACCATTGCTGCTATTTTAC+AGG | + | chr5_3:43536755-43536774 | None:intergenic | 35.0% |
ATAAAAGGGAGATATACCTC+TGG | + | chr5_3:43536835-43536854 | None:intergenic | 35.0% | |
CAAACTTAGTTTAGGTCGAA+TGG | - | chr5_3:43536968-43536987 | Msa0813050:intron | 35.0% | |
AAGTTTAATCCTTCACAGGT+TGG | + | chr5_3:43537193-43537212 | None:intergenic | 35.0% | |
TGGTTGCATATTTGATCTCT+AGG | - | chr5_3:43537218-43537237 | Msa0813050:intron | 35.0% | |
ATATGGTGATAAGAAGATGC+AGG | + | chr5_3:43537317-43537336 | None:intergenic | 35.0% | |
TGTGTATACAGCTCTTCATT+AGG | - | chr5_3:43537512-43537531 | Msa0813050:intron | 35.0% | |
TATACAGCTCTTCATTAGGA+AGG | - | chr5_3:43537516-43537535 | Msa0813050:intron | 35.0% | |
TCGTGGATGATCCAAATATT+TGG | - | chr5_3:43537781-43537800 | Msa0813050:three_prime_UTR | 35.0% | |
CGTGGATGATCCAAATATTT+GGG | - | chr5_3:43537782-43537801 | Msa0813050:three_prime_UTR | 35.0% | |
GTGGATGATCCAAATATTTG+GGG | - | chr5_3:43537783-43537802 | Msa0813050:three_prime_UTR | 35.0% | |
CAATCTTCTACAACCATTAC+AGG | + | chr5_3:43538046-43538065 | None:intergenic | 35.0% | |
ACAGTGCAGTAACAATTTCT+TGG | - | chr5_3:43538310-43538329 | Msa0813050:CDS | 35.0% | |
! | TTTCTTGGTAGTCTCTTTGT+AGG | - | chr5_3:43538325-43538344 | Msa0813050:CDS | 35.0% |
!! | CTTTCTCTTTTGGCTATCAT+AGG | - | chr5_3:43538392-43538411 | Msa0813050:CDS | 35.0% |
TTGGCTATCATAGGTAAGTT+TGG | - | chr5_3:43538401-43538420 | Msa0813050:CDS | 35.0% | |
!! | TGGGGCATTGAAATATGTAA+TGG | - | chr5_3:43538485-43538504 | Msa0813050:intron | 35.0% |
AACTTAAATAGCCCTAATGG+AGG | + | chr5_3:43538573-43538592 | None:intergenic | 35.0% | |
! | AATTCGTTGGAGTGATTTTC+AGG | - | chr5_3:43538653-43538672 | Msa0813050:intron | 35.0% |
! | ACTTGCTGCTCAAAATGAAA+AGG | + | chr5_3:43538818-43538837 | None:intergenic | 35.0% |
ATTAAAGCAGCTGCTAAAAC+TGG | - | chr5_3:43538866-43538885 | Msa0813050:intron | 35.0% | |
AATGTGTAGAGAATGTGACA+TGG | - | chr5_3:43538896-43538915 | Msa0813050:intron | 35.0% | |
ATGTGTAGAGAATGTGACAT+GGG | - | chr5_3:43538897-43538916 | Msa0813050:intron | 35.0% | |
TATGATAAAAGCCAAGCTTC+CGG | - | chr5_3:43538956-43538975 | Msa0813050:intron | 35.0% | |
TTCACTTCAAGTACATCGAA+AGG | - | chr5_3:43538982-43539001 | Msa0813050:CDS | 35.0% | |
AGGAGCTTAATCAACTAATG+GGG | + | chr5_3:43539396-43539415 | None:intergenic | 35.0% | |
GAAGGAGCTTAATCAACTAA+TGG | + | chr5_3:43539398-43539417 | None:intergenic | 35.0% | |
CAAATTGAAGCTTCAACCAA+AGG | + | chr5_3:43539442-43539461 | None:intergenic | 35.0% | |
!! | CATAAGAAAGCACCCTAAAT+TGG | + | chr5_3:43539465-43539484 | None:intergenic | 35.0% |
! | GGGTTTGAATATTTTGTGCA+AGG | - | chr5_3:43539659-43539678 | Msa0813050:CDS | 35.0% |
!!! | GAAAACGTCTTTTGGAGTAG+AGG | - | chr5_3:43536141-43536160 | Msa0813050:three_prime_UTR | 40.0% |
ACAAACAAAGATCACGGCAA+AGG | - | chr5_3:43536514-43536533 | Msa0813050:intron | 40.0% | |
AGCCTGTAAAATAGCAGCAA+TGG | - | chr5_3:43536750-43536769 | Msa0813050:intron | 40.0% | |
AAATCCGAGAGAACTCTATC+AGG | + | chr5_3:43536778-43536797 | None:intergenic | 40.0% | |
!! | TCGGATTTGCTATATGCAAC+AGG | - | chr5_3:43536790-43536809 | Msa0813050:intron | 40.0% |
!! | GATTTGCTATATGCAACAGG+TGG | - | chr5_3:43536793-43536812 | Msa0813050:intron | 40.0% |
! | TTTCTCAGTTTTCGTGTCTG+TGG | - | chr5_3:43537377-43537396 | Msa0813050:intron | 40.0% |
! | TTCTCAGTTTTCGTGTCTGT+GGG | - | chr5_3:43537378-43537397 | Msa0813050:intron | 40.0% |
TAGAAGCTCAATCAACTCAC+GGG | + | chr5_3:43537667-43537686 | None:intergenic | 40.0% | |
GTAGAAGCTCAATCAACTCA+CGG | + | chr5_3:43537668-43537687 | None:intergenic | 40.0% | |
GAAGAATGGCCCCAAATATT+TGG | + | chr5_3:43537795-43537814 | None:intergenic | 40.0% | |
TCTTGAAAACATGCAGGTGA+TGG | - | chr5_3:43537868-43537887 | Msa0813050:three_prime_UTR | 40.0% | |
! | TGGAATTACGCAGTTGATGT+TGG | - | chr5_3:43538198-43538217 | Msa0813050:intron | 40.0% |
!! | GATGTTGGTGTTTTTGCTTC+TGG | - | chr5_3:43538213-43538232 | Msa0813050:intron | 40.0% |
TACCAATTCAGGTGGAAATG+TGG | + | chr5_3:43538243-43538262 | None:intergenic | 40.0% | |
ACATTTCCACCTGAATTGGT+AGG | - | chr5_3:43538242-43538261 | Msa0813050:intron | 40.0% | |
ATTAGAGAGCCTACCAATTC+AGG | + | chr5_3:43538254-43538273 | None:intergenic | 40.0% | |
CCAAAGTCAAGAGACATTAG+AGG | + | chr5_3:43538356-43538375 | None:intergenic | 40.0% | |
CCTCTAATGTCTCTTGACTT+TGG | - | chr5_3:43538353-43538372 | Msa0813050:CDS | 40.0% | |
TGAAAAGGCTTTCCTCCATT+AGG | - | chr5_3:43538558-43538577 | Msa0813050:intron | 40.0% | |
GAAAAGGCTTTCCTCCATTA+GGG | - | chr5_3:43538559-43538578 | Msa0813050:intron | 40.0% | |
CAGTTCTCATTCTTCGGAAA+GGG | + | chr5_3:43538700-43538719 | None:intergenic | 40.0% | |
TGGTTGAAGAATGTGAGAAG+AGG | - | chr5_3:43539184-43539203 | Msa0813050:intron | 40.0% | |
GGAGCTTAATCAACTAATGG+GGG | + | chr5_3:43539395-43539414 | None:intergenic | 40.0% | |
AATTGTGCAGCACACATTGA+AGG | + | chr5_3:43539416-43539435 | None:intergenic | 40.0% | |
!!! | AACGTCTTTTGGAGTAGAGG+AGG | - | chr5_3:43536144-43536163 | Msa0813050:three_prime_UTR | 45.0% |
!!! | CATGTTTTTGGGCACTCAAC+AGG | - | chr5_3:43536313-43536332 | Msa0813050:three_prime_UTR | 45.0% |
!!! | CATGTTTTTGGGCACTCAAC+AGG | - | chr5_3:43536313-43536332 | Msa0813050:three_prime_UTR | 45.0% |
GGTTCCTGATAGAGTTCTCT+CGG | - | chr5_3:43536771-43536790 | Msa0813050:intron | 45.0% | |
!! | CACAGGTTGGTCAAAGAGTT+TGG | + | chr5_3:43537180-43537199 | None:intergenic | 45.0% |
ACTCTTTGACCAACCTGTGA+AGG | - | chr5_3:43537181-43537200 | Msa0813050:intron | 45.0% | |
CATCGACAGAACAACAACTC+CGG | - | chr5_3:43537410-43537429 | Msa0813050:three_prime_UTR | 45.0% | |
! | CAACTCCGGCATTTTCTCAT+AGG | - | chr5_3:43537424-43537443 | Msa0813050:three_prime_UTR | 45.0% |
GGTTGCCTATGAGAAAATGC+CGG | + | chr5_3:43537432-43537451 | None:intergenic | 45.0% | |
CTTGGTTCAAGCTATTAGCC+AGG | - | chr5_3:43537489-43537508 | Msa0813050:intron | 45.0% | |
TGAAGAGCTGTATACACACC+TGG | + | chr5_3:43537510-43537529 | None:intergenic | 45.0% | |
AGAAGCTCAATCAACTCACG+GGG | + | chr5_3:43537666-43537685 | None:intergenic | 45.0% | |
TTGCATCGCTCCTTCAATGT+TGG | + | chr5_3:43538136-43538155 | None:intergenic | 45.0% | |
AACATTGAAGGAGCGATGCA+AGG | - | chr5_3:43538135-43538154 | Msa0813050:intron | 45.0% | |
TGCCACATTTCCACCTGAAT+TGG | - | chr5_3:43538238-43538257 | Msa0813050:intron | 45.0% | |
CCAGTTCTCATTCTTCGGAA+AGG | + | chr5_3:43538701-43538720 | None:intergenic | 45.0% | |
CCTTTCCGAAGAATGAGAAC+TGG | - | chr5_3:43538698-43538717 | Msa0813050:intron | 45.0% | |
GCTCTCCAGTTCTCATTCTT+CGG | + | chr5_3:43538706-43538725 | None:intergenic | 45.0% | |
GAAGTGAATATCCGGAAGCT+TGG | + | chr5_3:43538970-43538989 | None:intergenic | 45.0% | |
CAAAAGGACATGCACATGCA+GGG | + | chr5_3:43539229-43539248 | None:intergenic | 45.0% | |
TCAAAAGGACATGCACATGC+AGG | + | chr5_3:43539230-43539249 | None:intergenic | 45.0% | |
!! | TGGTCAAAGAGTTTGGTGCG+TGG | + | chr5_3:43537173-43537192 | None:intergenic | 50.0% |
TCAGAACCTCGAGAGAAGTG+AGG | + | chr5_3:43538100-43538119 | None:intergenic | 50.0% | |
ATTGAAGGAGCGATGCAAGG+AGG | - | chr5_3:43538138-43538157 | Msa0813050:intron | 50.0% | |
AGCGATGCAAGGAGGAAACA+TGG | - | chr5_3:43538146-43538165 | Msa0813050:intron | 50.0% | |
GCGATGCAAGGAGGAAACAT+GGG | - | chr5_3:43538147-43538166 | Msa0813050:intron | 50.0% | |
ATGCAAGGAGGAAACATGGG+AGG | - | chr5_3:43538150-43538169 | Msa0813050:intron | 50.0% | |
AGAGAGCCTACCAATTCAGG+TGG | + | chr5_3:43538251-43538270 | None:intergenic | 50.0% | |
ATGTGTGTAAGGCTCTGCAG+TGG | - | chr5_3:43539347-43539366 | Msa0813050:intron | 50.0% | |
GTGCTGCACAATTCTGCCTT+TGG | - | chr5_3:43539423-43539442 | Msa0813050:intron | 50.0% | |
AGAGGAGGTGACAGTGAGTG+CGG | - | chr5_3:43536159-43536178 | Msa0813050:three_prime_UTR | 55.0% | |
AGTGAGTGCGGTGGTAATCG+TGG | - | chr5_3:43536171-43536190 | Msa0813050:three_prime_UTR | 55.0% | |
ACCACACCTCACTTCTCTCG+AGG | - | chr5_3:43538091-43538110 | Msa0813050:intron | 55.0% | |
ACCTCGAGAGAAGTGAGGTG+TGG | + | chr5_3:43538095-43538114 | None:intergenic | 55.0% | |
AGGAGGAAACATGGGAGGAC+CGG | - | chr5_3:43538155-43538174 | Msa0813050:intron | 55.0% | |
TGCGGTGGTAATCGTGGCGT+GGG | - | chr5_3:43536177-43536196 | Msa0813050:three_prime_UTR | 60.0% | |
GTGGTAATCGTGGCGTGGGT+CGG | - | chr5_3:43536181-43536200 | Msa0813050:three_prime_UTR | 60.0% | |
GGAGGAAACATGGGAGGACC+GGG | - | chr5_3:43538156-43538175 | Msa0813050:intron | 60.0% | |
GGAGGTGACAGTGAGTGCGG+TGG | - | chr5_3:43536162-43536181 | Msa0813050:three_prime_UTR | 65.0% | |
GTGCGGTGGTAATCGTGGCG+TGG | - | chr5_3:43536176-43536195 | Msa0813050:three_prime_UTR | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5_3 | gene | 43536102 | 43539695 | 43536102 | ID=Msa0813050;Name=Msa0813050 |
chr5_3 | mRNA | 43536102 | 43539695 | 43536102 | ID=Msa0813050-mRNA-1;Parent=Msa0813050;Name=Msa0813050-mRNA-1;_AED=0.18;_eAED=0.25;_QI=0|0.75|0.88|1|0.25|0.33|9|1211|124 |
chr5_3 | exon | 43536102 | 43536512 | 43536102 | ID=Msa0813050-mRNA-1:exon:13410;Parent=Msa0813050-mRNA-1 |
chr5_3 | exon | 43536592 | 43536700 | 43536592 | ID=Msa0813050-mRNA-1:exon:13409;Parent=Msa0813050-mRNA-1 |
chr5_3 | exon | 43536794 | 43536921 | 43536794 | ID=Msa0813050-mRNA-1:exon:13408;Parent=Msa0813050-mRNA-1 |
chr5_3 | exon | 43537018 | 43537122 | 43537018 | ID=Msa0813050-mRNA-1:exon:13407;Parent=Msa0813050-mRNA-1 |
chr5_3 | exon | 43537384 | 43537461 | 43537384 | ID=Msa0813050-mRNA-1:exon:13406;Parent=Msa0813050-mRNA-1 |
chr5_3 | exon | 43537538 | 43537913 | 43537538 | ID=Msa0813050-mRNA-1:exon:13405;Parent=Msa0813050-mRNA-1 |
chr5_3 | exon | 43538287 | 43538431 | 43538287 | ID=Msa0813050-mRNA-1:exon:13404;Parent=Msa0813050-mRNA-1 |
chr5_3 | exon | 43538960 | 43539057 | 43538960 | ID=Msa0813050-mRNA-1:exon:13403;Parent=Msa0813050-mRNA-1 |
chr5_3 | exon | 43539560 | 43539695 | 43539560 | ID=Msa0813050-mRNA-1:exon:13402;Parent=Msa0813050-mRNA-1 |
chr5_3 | CDS | 43539560 | 43539695 | 43539560 | ID=Msa0813050-mRNA-1:cds;Parent=Msa0813050-mRNA-1 |
chr5_3 | CDS | 43538960 | 43539057 | 43538960 | ID=Msa0813050-mRNA-1:cds;Parent=Msa0813050-mRNA-1 |
chr5_3 | CDS | 43538291 | 43538431 | 43538291 | ID=Msa0813050-mRNA-1:cds;Parent=Msa0813050-mRNA-1 |
chr5_3 | three_prime_UTR | 43538287 | 43538290 | 43538287 | ID=Msa0813050-mRNA-1:three_prime_utr;Parent=Msa0813050-mRNA-1 |
chr5_3 | three_prime_UTR | 43537538 | 43537913 | 43537538 | ID=Msa0813050-mRNA-1:three_prime_utr;Parent=Msa0813050-mRNA-1 |
chr5_3 | three_prime_UTR | 43537384 | 43537461 | 43537384 | ID=Msa0813050-mRNA-1:three_prime_utr;Parent=Msa0813050-mRNA-1 |
chr5_3 | three_prime_UTR | 43537018 | 43537122 | 43537018 | ID=Msa0813050-mRNA-1:three_prime_utr;Parent=Msa0813050-mRNA-1 |
chr5_3 | three_prime_UTR | 43536794 | 43536921 | 43536794 | ID=Msa0813050-mRNA-1:three_prime_utr;Parent=Msa0813050-mRNA-1 |
chr5_3 | three_prime_UTR | 43536592 | 43536700 | 43536592 | ID=Msa0813050-mRNA-1:three_prime_utr;Parent=Msa0813050-mRNA-1 |
chr5_3 | three_prime_UTR | 43536102 | 43536512 | 43536102 | ID=Msa0813050-mRNA-1:three_prime_utr;Parent=Msa0813050-mRNA-1 |
Gene Sequence |
Protein sequence |