Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0813070 | sp|O80874|NDA2_ARATH | 77.453 | 479 | 98 | 1 | 33 | 501 | 30 | 508 | 0.0 | 764 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0813070 | G7JZJ2 | 99.002 | 501 | 5 | 0 | 1 | 501 | 1 | 501 | 0.0 | 1028 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0775760 | Msa0813070 | 0.829605 | 4.687746e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0813070 | MtrunA17_Chr5g0430321 | 99.002 | 501 | 5 | 0 | 1 | 501 | 1 | 501 | 0.0 | 1028 |
| Msa0813070 | MtrunA17_Chr3g0105191 | 77.426 | 505 | 109 | 2 | 1 | 501 | 1 | 504 | 0.0 | 793 |
| Msa0813070 | MtrunA17_Chr4g0048041 | 76.327 | 452 | 107 | 0 | 50 | 501 | 92 | 543 | 0.0 | 748 |
| Msa0813070 | MtrunA17_Chr4g0022591 | 39.037 | 374 | 203 | 9 | 15 | 375 | 11 | 372 | 1.31e-75 | 248 |
| Msa0813070 | MtrunA17_Chr4g0022591 | 36.957 | 138 | 73 | 4 | 373 | 501 | 445 | 577 | 2.70e-15 | 78.6 |
| Msa0813070 | MtrunA17_Chr2g0281111 | 41.796 | 323 | 175 | 7 | 63 | 375 | 51 | 370 | 5.21e-74 | 244 |
| Msa0813070 | MtrunA17_Chr2g0281111 | 36.667 | 120 | 67 | 2 | 386 | 501 | 464 | 578 | 5.46e-13 | 71.2 |
| Msa0813070 | MtrunA17_Chr4g0048381 | 41.176 | 323 | 177 | 7 | 63 | 375 | 51 | 370 | 4.44e-73 | 242 |
| Msa0813070 | MtrunA17_Chr4g0048381 | 35.833 | 120 | 68 | 2 | 386 | 501 | 464 | 578 | 1.90e-12 | 69.7 |
| Msa0813070 | MtrunA17_Chr4g0022601 | 40.179 | 336 | 179 | 8 | 53 | 375 | 38 | 364 | 8.43e-71 | 236 |
| Msa0813070 | MtrunA17_Chr4g0022601 | 33.058 | 121 | 72 | 2 | 385 | 501 | 454 | 569 | 7.16e-11 | 64.7 |
| Msa0813070 | MtrunA17_Chr8g0384841 | 25.328 | 458 | 285 | 14 | 62 | 490 | 83 | 512 | 1.47e-16 | 82.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0813070 | AT2G29990.1 | 77.453 | 479 | 98 | 1 | 33 | 501 | 30 | 508 | 0.0 | 764 |
| Msa0813070 | AT1G07180.1 | 75.000 | 484 | 106 | 1 | 33 | 501 | 27 | 510 | 0.0 | 748 |
| Msa0813070 | AT4G28220.2 | 40.184 | 326 | 175 | 8 | 67 | 379 | 52 | 370 | 4.55e-73 | 240 |
| Msa0813070 | AT4G28220.1 | 40.184 | 326 | 175 | 8 | 67 | 379 | 52 | 370 | 1.72e-72 | 240 |
| Msa0813070 | AT4G28220.1 | 36.066 | 122 | 67 | 3 | 385 | 501 | 456 | 571 | 2.06e-12 | 70.1 |
| Msa0813070 | AT4G21490.1 | 37.958 | 382 | 221 | 7 | 29 | 397 | 15 | 393 | 2.63e-69 | 232 |
| Msa0813070 | AT4G21490.2 | 37.958 | 382 | 220 | 7 | 29 | 397 | 15 | 392 | 3.56e-69 | 232 |
| Msa0813070 | AT4G05020.1 | 39.722 | 360 | 197 | 8 | 32 | 375 | 18 | 373 | 1.29e-66 | 225 |
| Msa0813070 | AT4G05020.1 | 34.167 | 120 | 70 | 2 | 386 | 501 | 468 | 582 | 3.49e-11 | 66.2 |
| Msa0813070 | AT4G05020.2 | 39.722 | 360 | 197 | 8 | 32 | 375 | 18 | 373 | 2.88e-66 | 225 |
| Msa0813070 | AT2G20800.1 | 36.740 | 362 | 201 | 7 | 61 | 413 | 60 | 402 | 1.42e-61 | 212 |
| Msa0813070 | AT2G20800.1 | 36.364 | 121 | 68 | 2 | 385 | 501 | 467 | 582 | 3.10e-13 | 72.4 |
Find 162 sgRNAs with CRISPR-Local
Find 459 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTAAATAGGTTTACGCTCTT+TGG | 0.195195 | 5_3:-43564728 | None:intergenic |
| AACCTTCCACCAGGAGATTT+AGG | 0.197104 | 5_3:-43563336 | None:intergenic |
| TGAGAAGGGTTGGTCGAGTA+TGG | 0.228859 | 5_3:-43558953 | None:intergenic |
| GGAGCACAACCCACCACTTT+TGG | 0.268489 | 5_3:+43562366 | Msa0813070:CDS |
| GATTCTATGTAGCTATTAAC+TGG | 0.277448 | 5_3:+43564617 | Msa0813070:CDS |
| GGGTTGCTGGTTTGGTCTAC+TGG | 0.293963 | 5_3:+43563276 | Msa0813070:CDS |
| GGAACTGTACTTGTTCAATT+TGG | 0.297617 | 5_3:+43564862 | Msa0813070:three_prime_UTR |
| TTACAAGCACCTTGGAAGTA+TGG | 0.310701 | 5_3:+43564293 | Msa0813070:CDS |
| TTCCATACGGGTTGCTGGTT+TGG | 0.312770 | 5_3:+43563268 | Msa0813070:CDS |
| ATCCCATCAGCCCACATCTT+TGG | 0.320147 | 5_3:+43558811 | Msa0813070:five_prime_UTR |
| ACACATCAAGATTCAACTTT+AGG | 0.324481 | 5_3:+43564987 | Msa0813070:intron |
| ACCTTCCACCAGGAGATTTA+GGG | 0.336747 | 5_3:-43563335 | None:intergenic |
| TGATTTGGATGCAGGGATTT+CGG | 0.349898 | 5_3:+43562559 | Msa0813070:intron |
| GATAATGTCACCAACTTTGT+TGG | 0.350078 | 5_3:-43558760 | None:intergenic |
| TGAGGTTCCATACGGGTTGC+TGG | 0.353242 | 5_3:+43563263 | Msa0813070:CDS |
| AAGAGGAAGGCAATAAAATA+TGG | 0.365704 | 5_3:+43564931 | Msa0813070:three_prime_UTR |
| GATAAGTTAGTAATTGCATT+AGG | 0.372684 | 5_3:+43562345 | Msa0813070:CDS |
| TTCAATTTGGTAGAAATTGT+TGG | 0.380197 | 5_3:+43564875 | Msa0813070:three_prime_UTR |
| GTTGATATAAACATGAAAAC+TGG | 0.381268 | 5_3:-43565042 | None:intergenic |
| AGATCCAGCGAGTGGATAAA+AGG | 0.389977 | 5_3:-43563312 | None:intergenic |
| ATAGGAGATTGTAAACTTCC+AGG | 0.395776 | 5_3:-43562322 | None:intergenic |
| CGCGTGGTGGTTCTCGGCAC+TGG | 0.400851 | 5_3:+43559085 | Msa0813070:CDS |
| AAGCCACGCGTGGTGGTTCT+CGG | 0.403632 | 5_3:+43559079 | Msa0813070:CDS |
| GTACAAGATATCTTCTCAAT+AGG | 0.408338 | 5_3:+43563662 | Msa0813070:CDS |
| CTGGTTTGGTCTACTGGAGT+TGG | 0.418407 | 5_3:+43563282 | Msa0813070:CDS |
| GCTGTCTGCACGGCCTCCAT+TGG | 0.418506 | 5_3:-43564238 | None:intergenic |
| TAAAGCTCACCTTTGTCAAC+TGG | 0.420834 | 5_3:-43563041 | None:intergenic |
| TTCTTCCTTGCTAATTGTAC+CGG | 0.423214 | 5_3:+43559298 | Msa0813070:CDS |
| GTTCTCGGCACTGGTTGGGC+CGG | 0.427151 | 5_3:+43559094 | Msa0813070:CDS |
| GCGAACCGGAGCGGTTGAAC+CGG | 0.430398 | 5_3:-43559023 | None:intergenic |
| GAGAGAGAAGAGTGAGAGAT+GGG | 0.434356 | 5_3:-43558982 | None:intergenic |
| TTGATGATGTCTGACGTTCC+AGG | 0.436902 | 5_3:+43562471 | Msa0813070:CDS |
| TGCAATTACTAACTTATCAT+AGG | 0.442331 | 5_3:-43562340 | None:intergenic |
| GGATGCAGGGATTTCGGAAG+AGG | 0.444020 | 5_3:+43562565 | Msa0813070:intron |
| CCTACGGGAGTTGAATTTAG+TGG | 0.445405 | 5_3:+43562629 | Msa0813070:CDS |
| CGCTTCTCCACTTCAACACC+CGG | 0.450000 | 5_3:+43559004 | Msa0813070:CDS |
| TAGTCAATTTCTTTATTTGA+GGG | 0.450473 | 5_3:-43565168 | None:intergenic |
| GAGAAGGGTTGGTCGAGTAT+GGG | 0.450487 | 5_3:-43558952 | None:intergenic |
| AGAGATGGGAAGAGGTGAGA+AGG | 0.451443 | 5_3:-43558968 | None:intergenic |
| ATCTAACTCGTGTCATTAGC+TGG | 0.452596 | 5_3:+43564587 | Msa0813070:CDS |
| TATCCATGTTACTTTGATTG+AGG | 0.453761 | 5_3:+43562712 | Msa0813070:CDS |
| GGTGGTTCTCGGCACTGGTT+GGG | 0.457628 | 5_3:+43559090 | Msa0813070:CDS |
| GAAGAGTGAGAGATGGGAAG+AGG | 0.457738 | 5_3:-43558976 | None:intergenic |
| CGAGAGAGAAGAGTGAGAGA+TGG | 0.463439 | 5_3:-43558983 | None:intergenic |
| TGGGAAGAGGTGAGAAGGGT+TGG | 0.465709 | 5_3:-43558963 | None:intergenic |
| GCAGGTTGAATCCTAGCAAC+AGG | 0.465923 | 5_3:-43559250 | None:intergenic |
| CCAGGTTCTTTGGAAATAGC+AGG | 0.466685 | 5_3:-43559268 | None:intergenic |
| GAGATGGGAAGAGGTGAGAA+GGG | 0.471329 | 5_3:-43558967 | None:intergenic |
| TGAGTGGCTTCGTGTTCCTT+CGG | 0.474068 | 5_3:+43563640 | Msa0813070:CDS |
| CTTCCTTTGATGACCGACTT+AGG | 0.474188 | 5_3:+43563004 | Msa0813070:CDS |
| AGAAGGGTTGGTCGAGTATG+GGG | 0.474380 | 5_3:-43558951 | None:intergenic |
| CCGGTTCGCTATGCGGCTCT+CGG | 0.474842 | 5_3:+43559037 | Msa0813070:CDS |
| CCGAGAGCCGCATAGCGAAC+CGG | 0.477016 | 5_3:-43559037 | None:intergenic |
| TGGTGGTTCTCGGCACTGGT+TGG | 0.477298 | 5_3:+43559089 | Msa0813070:CDS |
| ATGCAGATTCATGAAAGGAT+TGG | 0.478927 | 5_3:+43559117 | Msa0813070:CDS |
| CACTGTGTGGTTGTCGGAGG+TGG | 0.479951 | 5_3:+43562605 | Msa0813070:CDS |
| TCCTTTCATGAATCTGCATC+CGG | 0.482533 | 5_3:-43559113 | None:intergenic |
| GAACACAGACACTGGATCCC+TGG | 0.485336 | 5_3:+43562304 | Msa0813070:CDS |
| TTCATATTCTGCTTATATCA+CGG | 0.485820 | 5_3:-43564660 | None:intergenic |
| ATAATGTCACCAACTTTGTT+GGG | 0.485842 | 5_3:-43558759 | None:intergenic |
| TTTCTCCTACAGGATGCAAA+AGG | 0.488236 | 5_3:+43564517 | Msa0813070:intron |
| GGCTTCTCGTGTGGTTTGGT+TGG | 0.489674 | 5_3:-43559061 | None:intergenic |
| GTTGTCGGAGGTGGTCCTAC+GGG | 0.490066 | 5_3:+43562614 | Msa0813070:CDS |
| CACCTTTGTCAACTGGTTGG+TGG | 0.490675 | 5_3:-43563034 | None:intergenic |
| GCGTGGCTTCTCGTGTGGTT+TGG | 0.494416 | 5_3:-43559065 | None:intergenic |
| AAAGGAAGACAATATCTCAT+TGG | 0.494833 | 5_3:-43562989 | None:intergenic |
| GTAGTCAATTTCTTTATTTG+AGG | 0.494902 | 5_3:-43565169 | None:intergenic |
| CTGGATCTCCCTAAATCTCC+TGG | 0.496340 | 5_3:+43563327 | Msa0813070:CDS |
| AACACCCGGTTCAACCGCTC+CGG | 0.500329 | 5_3:+43559018 | Msa0813070:CDS |
| CAGTTGGTTTGTTTGGCGCT+CGG | 0.501757 | 5_3:+43564561 | Msa0813070:CDS |
| AAAGATGTGGGCTGATGGGA+TGG | 0.504385 | 5_3:-43558809 | None:intergenic |
| CTGTTACACTGTGTGGTTGT+CGG | 0.506874 | 5_3:+43562599 | Msa0813070:CDS |
| TAGGTAAAATACTTTCAGAA+TGG | 0.507423 | 5_3:+43564693 | Msa0813070:three_prime_UTR |
| TCGTGAAGTTTACCATGCAC+AGG | 0.511255 | 5_3:+43562422 | Msa0813070:CDS |
| AGTGGATTTGTTGAAAGTAC+CGG | 0.512050 | 5_3:+43563692 | Msa0813070:CDS |
| GGTTGTCGGAGGTGGTCCTA+CGG | 0.516435 | 5_3:+43562613 | Msa0813070:CDS |
| GCAAAAGGATTGTCTCTGGC+AGG | 0.518641 | 5_3:+43564532 | Msa0813070:CDS |
| GGATGCAAAAGGATTGTCTC+TGG | 0.519221 | 5_3:+43564528 | Msa0813070:intron |
| ACCACGCGTGGCTTCTCGTG+TGG | 0.520725 | 5_3:-43559070 | None:intergenic |
| CAGTTTGTTTACAAGCACCT+TGG | 0.525860 | 5_3:+43564285 | Msa0813070:CDS |
| CCTGCTATTTCCAAAGAACC+TGG | 0.527740 | 5_3:+43559268 | Msa0813070:CDS |
| TTTCGGAAGAGGAGAAGAAA+AGG | 0.527798 | 5_3:+43562576 | Msa0813070:CDS |
| AGAAATTGTTGGCACTTGAA+AGG | 0.531295 | 5_3:+43564886 | Msa0813070:three_prime_UTR |
| AGCATGAAAGATATAGACTT+GGG | 0.533211 | 5_3:+43564258 | Msa0813070:CDS |
| GAAGGGTTGGTCGAGTATGG+GGG | 0.533667 | 5_3:-43558950 | None:intergenic |
| AAAGTTACTTGGGCAAGAGC+AGG | 0.534602 | 5_3:-43563728 | None:intergenic |
| ATGTTTATCAGCATTGATAC+CGG | 0.534978 | 5_3:-43559317 | None:intergenic |
| GACAAGCAGCCCAACAAAGT+TGG | 0.536797 | 5_3:+43558750 | Msa0813070:five_prime_UTR |
| GCAGCCTTGTTAAACAAAGT+AGG | 0.539948 | 5_3:+43564210 | Msa0813070:CDS |
| GAAATGATGTTCCAAAGATG+TGG | 0.541458 | 5_3:-43558822 | None:intergenic |
| CTGTTGCTGAACCTGTTGCT+AGG | 0.543077 | 5_3:+43559239 | Msa0813070:CDS |
| GTTCCAAAGATGTGGGCTGA+TGG | 0.543718 | 5_3:-43558814 | None:intergenic |
| TGGGCAAGAGCAGGAAGTGT+TGG | 0.544735 | 5_3:-43563719 | None:intergenic |
| TCAGGAGTGCGACTTGTTCG+AGG | 0.547733 | 5_3:+43563192 | Msa0813070:CDS |
| CTTGGAAGTATGGCAACTGT+TGG | 0.548211 | 5_3:+43564303 | Msa0813070:CDS |
| CGAACCGGAGCGGTTGAACC+GGG | 0.549006 | 5_3:-43559022 | None:intergenic |
| CAGCATGAAAGATATAGACT+TGG | 0.550417 | 5_3:+43564257 | Msa0813070:CDS |
| GGGTTTGAAAAGTTGTTTCG+TGG | 0.553703 | 5_3:-43558930 | None:intergenic |
| TGTATCCCCGCGTAATCACA+TGG | 0.555108 | 5_3:+43559165 | Msa0813070:CDS |
| TAGGAGATTGTAAACTTCCA+GGG | 0.555838 | 5_3:-43562321 | None:intergenic |
| AACTCCATGAATTCCAAAAG+TGG | 0.557244 | 5_3:-43562379 | None:intergenic |
| AAAAGATAGCTTGAAGAGGA+AGG | 0.567409 | 5_3:+43564918 | Msa0813070:three_prime_UTR |
| TCCATGAATTCCAAAAGTGG+TGG | 0.567774 | 5_3:-43562376 | None:intergenic |
| TTCACCTACTTTGTTTAACA+AGG | 0.568346 | 5_3:-43564214 | None:intergenic |
| TTCCAAAGATGTGGGCTGAT+GGG | 0.570109 | 5_3:-43558813 | None:intergenic |
| AAAATACTTTCAGAATGGCT+AGG | 0.571658 | 5_3:+43564698 | Msa0813070:three_prime_UTR |
| AACTGAAGGAACACAGACAC+TGG | 0.572704 | 5_3:+43562296 | Msa0813070:CDS |
| TATCTTTCATGCTGTCTGCA+CGG | 0.573160 | 5_3:-43564248 | None:intergenic |
| CAACAGTTGCCATACTTCCA+AGG | 0.573364 | 5_3:-43564302 | None:intergenic |
| GACCAAACCAGCAACCCGTA+TGG | 0.575517 | 5_3:-43563270 | None:intergenic |
| TCCCTAAATCTCCTGGTGGA+AGG | 0.576208 | 5_3:+43563334 | Msa0813070:CDS |
| GTGCCTAAGTCGGTCATCAA+AGG | 0.577551 | 5_3:-43563007 | None:intergenic |
| CGTCAGACATCATCAAATTG+AGG | 0.578854 | 5_3:-43562464 | None:intergenic |
| TGCGACGAATTTCCTGTGCA+TGG | 0.580363 | 5_3:-43562434 | None:intergenic |
| AAATTACCTTGTTCTGTCTG+AGG | 0.582764 | 5_3:-43564347 | None:intergenic |
| ACAGGATTGGTATTGATGAG+TGG | 0.585206 | 5_3:+43563624 | Msa0813070:intron |
| GATGGTACTGAGGTTCCATA+CGG | 0.585400 | 5_3:+43563255 | Msa0813070:CDS |
| GGCAACTGTTGGAAGTTACA+AGG | 0.589456 | 5_3:+43564314 | Msa0813070:CDS |
| ACACAAGTAGAAGCCAAAAG+AGG | 0.590268 | 5_3:-43559196 | None:intergenic |
| AGCGAGTGGATAAAAGGTGA+TGG | 0.590313 | 5_3:-43563306 | None:intergenic |
| GCCGGATGCAGATTCATGAA+AGG | 0.593084 | 5_3:+43559112 | Msa0813070:CDS |
| GGTTGAACCGGGTGTTGAAG+TGG | 0.593883 | 5_3:-43559011 | None:intergenic |
| CCATGAATTCCAAAAGTGGT+GGG | 0.610117 | 5_3:-43562375 | None:intergenic |
| AGTAGACCTCAGACAGAACA+AGG | 0.610589 | 5_3:+43564341 | Msa0813070:CDS |
| ACTCAAAAGATAGCTTGAAG+AGG | 0.611367 | 5_3:+43564914 | Msa0813070:three_prime_UTR |
| GAGAAGATATCTTGTACCGA+AGG | 0.620961 | 5_3:-43563656 | None:intergenic |
| GCTCACCTTTGTCAACTGGT+TGG | 0.622023 | 5_3:-43563037 | None:intergenic |
| TGGTGGCGTAGTGCCTAAGT+CGG | 0.622821 | 5_3:-43563017 | None:intergenic |
| AAGATGTGGGCTGATGGGAT+GGG | 0.625600 | 5_3:-43558808 | None:intergenic |
| ACACGAGAAGCCACGCGTGG+TGG | 0.626869 | 5_3:+43559072 | Msa0813070:CDS |
| TGAAAACCATGTGATTACGC+GGG | 0.630073 | 5_3:-43559171 | None:intergenic |
| AACAAAGTAGGTGAAGCCAA+TGG | 0.630315 | 5_3:+43564222 | Msa0813070:CDS |
| TGATACCGGTACAATTAGCA+AGG | 0.631909 | 5_3:-43559303 | None:intergenic |
| ACATGAAAACTGGTTTGTTG+TGG | 0.632516 | 5_3:-43565032 | None:intergenic |
| CGCCACCAACCAGTTGACAA+AGG | 0.632644 | 5_3:+43563032 | Msa0813070:CDS |
| CCACTAAATTCAACTCCCGT+AGG | 0.634013 | 5_3:-43562629 | None:intergenic |
| TCAGAGATATGCTCATGTGA+AGG | 0.636417 | 5_3:+43562685 | Msa0813070:CDS |
| ATGGTACTGAGGTTCCATAC+GGG | 0.637112 | 5_3:+43563256 | Msa0813070:CDS |
| AACCGCTCCGGTTCGCTATG+CGG | 0.638944 | 5_3:+43559030 | Msa0813070:CDS |
| CCACAGGTAGCAGAGAGACA+AGG | 0.641757 | 5_3:+43564177 | Msa0813070:intron |
| TTCTCAATAGGTGACTGCAG+TGG | 0.644093 | 5_3:+43563674 | Msa0813070:CDS |
| GTGCCGAGAACCACCACGCG+TGG | 0.644427 | 5_3:-43559082 | None:intergenic |
| CAATGTGAGACTGTAACTGA+AGG | 0.645608 | 5_3:+43562282 | Msa0813070:CDS |
| ATTTAGGGAGATCCAGCGAG+TGG | 0.654814 | 5_3:-43563320 | None:intergenic |
| GTGAAAACCATGTGATTACG+CGG | 0.655602 | 5_3:-43559172 | None:intergenic |
| TATCAATGCTGATAAACATG+AGG | 0.659278 | 5_3:+43559321 | Msa0813070:CDS |
| TATACTTAACGATGGTACTG+AGG | 0.661927 | 5_3:+43563245 | Msa0813070:CDS |
| ACCACACGAGAAGCCACGCG+TGG | 0.664281 | 5_3:+43559069 | Msa0813070:CDS |
| AAAGTAGGTGAAGCCAATGG+AGG | 0.673473 | 5_3:+43564225 | Msa0813070:CDS |
| AGCCGCATAGCGAACCGGAG+CGG | 0.675373 | 5_3:-43559032 | None:intergenic |
| GAAAACCATGTGATTACGCG+GGG | 0.676500 | 5_3:-43559170 | None:intergenic |
| TTACACTGTGTGGTTGTCGG+AGG | 0.678237 | 5_3:+43562602 | Msa0813070:CDS |
| TTCTAGTTAGCTGAACAACA+AGG | 0.678547 | 5_3:+43564841 | Msa0813070:three_prime_UTR |
| GAGTAAACAAACCTTCCACC+AGG | 0.679279 | 5_3:-43563345 | None:intergenic |
| AAGAAGATTATACTTAACGA+TGG | 0.679351 | 5_3:+43563237 | Msa0813070:CDS |
| GAAAAGGCTGTTACACTGTG+TGG | 0.679820 | 5_3:+43562592 | Msa0813070:CDS |
| AAATGATGTTCCAAAGATGT+GGG | 0.680820 | 5_3:-43558821 | None:intergenic |
| ATTCTATGTAGCTATTAACT+GGG | 0.685511 | 5_3:+43564618 | Msa0813070:CDS |
| ATACCTCAATCAAAGTAACA+TGG | 0.690821 | 5_3:-43562715 | None:intergenic |
| GCATGAAAGATATAGACTTG+GGG | 0.694188 | 5_3:+43564259 | Msa0813070:CDS |
| GATCTCCCTAAATCTCCTGG+TGG | 0.696100 | 5_3:+43563330 | Msa0813070:CDS |
| TAACTCGTGTCATTAGCTGG+AGG | 0.697962 | 5_3:+43564590 | Msa0813070:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTTTCATTTTTGT+AGG | + | chr5_3:43561216-43561235 | Msa0813070:intron | 10.0% |
| !!! | TTTTTTTTTTCATTTTTGTA+GGG | + | chr5_3:43561217-43561236 | Msa0813070:intron | 10.0% |
| !!! | GATAAAAAAAAGTATATATT+TGG | - | chr5_3:43563499-43563518 | None:intergenic | 10.0% |
| !!! | TTTTTCTCTTTTCAATTTTA+TGG | + | chr5_3:43559414-43559433 | Msa0813070:intron | 15.0% |
| !! | TTGGTTTAAAAAAAAAACAA+GGG | - | chr5_3:43560312-43560331 | None:intergenic | 15.0% |
| !! | AACTAAATGAAATTTATTTG+AGG | + | chr5_3:43561124-43561143 | Msa0813070:intron | 15.0% |
| !! | TTACAATTCTTATGAAAAAT+AGG | + | chr5_3:43562088-43562107 | Msa0813070:intron | 15.0% |
| !! | TACAATTCTTATGAAAAATA+GGG | + | chr5_3:43562089-43562108 | Msa0813070:intron | 15.0% |
| !! | AATTCATTGTGATAATAAAA+TGG | + | chr5_3:43562836-43562855 | Msa0813070:intron | 15.0% |
| !! | CTGTGAAAAAAAAAAAAAAT+TGG | - | chr5_3:43562929-43562948 | None:intergenic | 15.0% |
| !! | GAATATGAAGAAAAAAAATT+AGG | + | chr5_3:43564674-43564693 | Msa0813070:exon | 15.0% |
| !! | GTATTGTATCTAAACTTATT+TGG | + | chr5_3:43559361-43559380 | Msa0813070:intron | 20.0% |
| !!! | TTTCAATTTTATGGCTTATA+TGG | + | chr5_3:43559423-43559442 | Msa0813070:intron | 20.0% |
| !! | AGGTTTGAATTAAATTGTAA+CGG | + | chr5_3:43559495-43559514 | Msa0813070:intron | 20.0% |
| !!! | GTTTTATATAAACAAAACTG+AGG | + | chr5_3:43559958-43559977 | Msa0813070:intron | 20.0% |
| !! | CTTGGTTTAAAAAAAAAACA+AGG | - | chr5_3:43560313-43560332 | None:intergenic | 20.0% |
| !!! | CTTGTTTTTTTTTTAAACCA+AGG | + | chr5_3:43560311-43560330 | Msa0813070:intron | 20.0% |
| !! | TTTCTCTTAAAATGAAATAG+CGG | + | chr5_3:43560346-43560365 | Msa0813070:intron | 20.0% |
| !! | AATTAGCAATTAACTAATCA+AGG | + | chr5_3:43560522-43560541 | Msa0813070:intron | 20.0% |
| !! | TAATAAGAATGATAAGTAGT+TGG | + | chr5_3:43560843-43560862 | Msa0813070:intron | 20.0% |
| !! | TGAAAATTGAAACCATTAAA+AGG | + | chr5_3:43561149-43561168 | Msa0813070:intron | 20.0% |
| !! | TATGAAAATGAATTTCCATT+GGG | - | chr5_3:43561345-43561364 | None:intergenic | 20.0% |
| !! | ATATGAAAATGAATTTCCAT+TGG | - | chr5_3:43561346-43561365 | None:intergenic | 20.0% |
| !! | TTACAAATTTACCACAAAAT+TGG | - | chr5_3:43562889-43562908 | None:intergenic | 20.0% |
| !! | ATATGGATACATATAGTATT+CGG | + | chr5_3:43563439-43563458 | Msa0813070:intron | 20.0% |
| !! | GTGTTGAAACATAATATATT+TGG | - | chr5_3:43563528-43563547 | None:intergenic | 20.0% |
| !! | AATAAATTGAAAACAGCTTA+TGG | - | chr5_3:43563971-43563990 | None:intergenic | 20.0% |
| !! | TTTATCTCTTATGATAGAAA+TGG | + | chr5_3:43564058-43564077 | Msa0813070:intron | 20.0% |
| !! | AACTTAATTAAGCACTTATA+AGG | - | chr5_3:43564117-43564136 | None:intergenic | 20.0% |
| !! | ATTAAGTTAATTATCCAAAC+AGG | + | chr5_3:43564129-43564148 | Msa0813070:intron | 20.0% |
| !! | TTAAGTTAATTATCCAAACA+GGG | + | chr5_3:43564130-43564149 | Msa0813070:intron | 20.0% |
| !! | ATAAAATGTCACAACTAAAT+AGG | - | chr5_3:43564745-43564764 | None:intergenic | 20.0% |
| !!! | TCATTATTATTTTTGCTTGA+TGG | - | chr5_3:43565074-43565093 | None:intergenic | 20.0% |
| !!! | CATTATTTTGAACATACAAT+TGG | - | chr5_3:43565105-43565124 | None:intergenic | 20.0% |
| !!! | TAGTCAATTTCTTTATTTGA+GGG | - | chr5_3:43565171-43565190 | None:intergenic | 20.0% |
| ! | AAAAAAATCAAACACCTCTT+AGG | - | chr5_3:43559399-43559418 | None:intergenic | 25.0% |
| ! | TTATATGGTTTAGTTATGGT+TGG | + | chr5_3:43559438-43559457 | Msa0813070:intron | 25.0% |
| ! | TGTTTCAATGAGTAATTTCA+AGG | - | chr5_3:43559693-43559712 | None:intergenic | 25.0% |
| ! | ATTGAAACATTGTGAATTCT+TGG | + | chr5_3:43559704-43559723 | Msa0813070:intron | 25.0% |
| ! | AGAAAATACAAAATTGTCCT+TGG | - | chr5_3:43560331-43560350 | None:intergenic | 25.0% |
| ! | CTAATTCTGATTCTTAGATT+TGG | - | chr5_3:43560508-43560527 | None:intergenic | 25.0% |
| ! | CTGAGCTTTACAAAAAAAAA+AGG | + | chr5_3:43560740-43560759 | Msa0813070:intron | 25.0% |
| !! | TGATTTTTGTCTCAAACTTT+AGG | + | chr5_3:43560776-43560795 | Msa0813070:intron | 25.0% |
| ! | TAAATCCTCAATACATAGTT+TGG | - | chr5_3:43560991-43561010 | None:intergenic | 25.0% |
| !!! | CATTAAAAGGTACCTTATTT+GGG | + | chr5_3:43561162-43561181 | Msa0813070:intron | 25.0% |
| ! | TAAATTCCAAATCCCAAATA+AGG | - | chr5_3:43561177-43561196 | None:intergenic | 25.0% |
| ! | ATGAAAATGAATTTCCATTG+GGG | - | chr5_3:43561344-43561363 | None:intergenic | 25.0% |
| ! | TATTCTTATTAGAAACTGAG+AGG | + | chr5_3:43561624-43561643 | Msa0813070:intron | 25.0% |
| ! | AAATCAGAATGGAATATACA+AGG | - | chr5_3:43561711-43561730 | None:intergenic | 25.0% |
| ! | CAATATATTCTTAATAGCCT+AGG | + | chr5_3:43561855-43561874 | Msa0813070:intron | 25.0% |
| ! | ATAACAGTGTTATAAAAACC+AGG | - | chr5_3:43562132-43562151 | None:intergenic | 25.0% |
| ! | TGCAATTACTAACTTATCAT+AGG | - | chr5_3:43562343-43562362 | None:intergenic | 25.0% |
| ! | GATAAGTTAGTAATTGCATT+AGG | + | chr5_3:43562345-43562364 | Msa0813070:CDS | 25.0% |
| !!! | AAGCATTATTTTTCAAACAC+AGG | - | chr5_3:43562511-43562530 | None:intergenic | 25.0% |
| ! | AAATCAGTTACAGATTACAA+AGG | - | chr5_3:43562545-43562564 | None:intergenic | 25.0% |
| ! | TTTGTAATCTGTAACTGATT+TGG | + | chr5_3:43562544-43562563 | Msa0813070:intron | 25.0% |
| ! | AATAGATTATACACATGTTG+TGG | + | chr5_3:43562769-43562788 | Msa0813070:intron | 25.0% |
| !!! | ACTTTTTTCGTGATATTCAT+AGG | - | chr5_3:43563119-43563138 | None:intergenic | 25.0% |
| ! | CATATTGAACAAACAGTAAA+GGG | - | chr5_3:43563142-43563161 | None:intergenic | 25.0% |
| ! | ACATATTGAACAAACAGTAA+AGG | - | chr5_3:43563143-43563162 | None:intergenic | 25.0% |
| ! | AAGAAGATTATACTTAACGA+TGG | + | chr5_3:43563237-43563256 | Msa0813070:CDS | 25.0% |
| !!! | TTGCATTTATTTTCTTTCCA+TGG | + | chr5_3:43563378-43563397 | Msa0813070:intron | 25.0% |
| ! | TCAAGAAATGAAAGTTACTT+GGG | - | chr5_3:43563741-43563760 | None:intergenic | 25.0% |
| ! | TTCAAGAAATGAAAGTTACT+TGG | - | chr5_3:43563742-43563761 | None:intergenic | 25.0% |
| !!! | TTTGGTTTTAGTTTAACACT+AGG | + | chr5_3:43563780-43563799 | Msa0813070:intron | 25.0% |
| !!! | TTGGTTTTAGTTTAACACTA+GGG | + | chr5_3:43563781-43563800 | Msa0813070:intron | 25.0% |
| ! | AAACTTATTCATGTCAACTT+AGG | + | chr5_3:43563894-43563913 | Msa0813070:intron | 25.0% |
| ! | AACTTATTCATGTCAACTTA+GGG | + | chr5_3:43563895-43563914 | Msa0813070:intron | 25.0% |
| !!! | TTTTTAAAAGCACCAACAAA+AGG | - | chr5_3:43564472-43564491 | None:intergenic | 25.0% |
| ! | ATTCTATGTAGCTATTAACT+GGG | + | chr5_3:43564618-43564637 | Msa0813070:CDS | 25.0% |
| ! | TTCATATTCTGCTTATATCA+CGG | - | chr5_3:43564663-43564682 | None:intergenic | 25.0% |
| ! | TAGGTAAAATACTTTCAGAA+TGG | + | chr5_3:43564693-43564712 | Msa0813070:three_prime_UTR | 25.0% |
| ! | TTCAATTTGGTAGAAATTGT+TGG | + | chr5_3:43564875-43564894 | Msa0813070:three_prime_UTR | 25.0% |
| ! | GTTGATATAAACATGAAAAC+TGG | - | chr5_3:43565045-43565064 | None:intergenic | 25.0% |
| !! | GTAGTCAATTTCTTTATTTG+AGG | - | chr5_3:43565172-43565191 | None:intergenic | 25.0% |
| ATAATGTCACCAACTTTGTT+GGG | - | chr5_3:43558762-43558781 | None:intergenic | 30.0% | |
| AAATGATGTTCCAAAGATGT+GGG | - | chr5_3:43558824-43558843 | None:intergenic | 30.0% | |
| ! | GAGGTTTTTAAACAAAGACA+TGG | - | chr5_3:43558891-43558910 | None:intergenic | 30.0% |
| !! | TGAAGAAGTAACTTTTTGAG+AGG | - | chr5_3:43558910-43558929 | None:intergenic | 30.0% |
| !! | ATGTTTATCAGCATTGATAC+CGG | - | chr5_3:43559320-43559339 | None:intergenic | 30.0% |
| TATCAATGCTGATAAACATG+AGG | + | chr5_3:43559321-43559340 | Msa0813070:CDS | 30.0% | |
| TGGCTTATATGGTTTAGTTA+TGG | + | chr5_3:43559434-43559453 | Msa0813070:intron | 30.0% | |
| AGTTATGGTTGGAGAAAAAA+CGG | + | chr5_3:43559449-43559468 | Msa0813070:intron | 30.0% | |
| !! | TTTTAGAGATCTCATTGACT+AGG | + | chr5_3:43559475-43559494 | Msa0813070:intron | 30.0% |
| TAACGGAGTAAATTGTCATT+TGG | + | chr5_3:43559512-43559531 | Msa0813070:intron | 30.0% | |
| ! | AACGGAGTAAATTGTCATTT+GGG | + | chr5_3:43559513-43559532 | Msa0813070:intron | 30.0% |
| !! | GGGTTCTTCAATATTTTAGA+CGG | + | chr5_3:43559533-43559552 | Msa0813070:intron | 30.0% |
| !! | GTGTCTTTTGTTTGTCAATT+TGG | + | chr5_3:43559666-43559685 | Msa0813070:intron | 30.0% |
| AAACATTGTGAATTCTTGGT+TGG | + | chr5_3:43559708-43559727 | Msa0813070:intron | 30.0% | |
| ! | ACTTTACAAGTTTCGTTTTG+AGG | + | chr5_3:43559815-43559834 | Msa0813070:intron | 30.0% |
| TATCCGCTATTAACTACTAT+GGG | - | chr5_3:43559853-43559872 | None:intergenic | 30.0% | |
| TTATGCTCTCTATGAAATAG+CGG | - | chr5_3:43559934-43559953 | None:intergenic | 30.0% | |
| ! | CTATTTCATAGAGAGCATAA+TGG | + | chr5_3:43559934-43559953 | Msa0813070:intron | 30.0% |
| AACTCGAACAAAAAAGTAAC+AGG | + | chr5_3:43560051-43560070 | Msa0813070:intron | 30.0% | |
| TCTTTCATTCTTACGCAAAA+CGG | - | chr5_3:43560239-43560258 | None:intergenic | 30.0% | |
| ! | TTTTGCGTAAGAATGAAAGA+AGG | + | chr5_3:43560239-43560258 | Msa0813070:intron | 30.0% |
| TTAGGTTCAATTCCTATGTT+GGG | + | chr5_3:43560620-43560639 | Msa0813070:intron | 30.0% | |
| ATGTTAATGTGACTATGATG+TGG | + | chr5_3:43560886-43560905 | Msa0813070:intron | 30.0% | |
| !! | CCAAATAAGGTACCTTTTAA+TGG | - | chr5_3:43561164-43561183 | None:intergenic | 30.0% |
| !! | CCATTAAAAGGTACCTTATT+TGG | + | chr5_3:43561161-43561180 | Msa0813070:intron | 30.0% |
| ATGCTTGGTTATTGTTGTAT+TGG | + | chr5_3:43561282-43561301 | Msa0813070:intron | 30.0% | |
| AACCCAAATGACTATTTACT+CGG | - | chr5_3:43561385-43561404 | None:intergenic | 30.0% | |
| GGGTTGTTTAATATGTCTAA+TGG | + | chr5_3:43561400-43561419 | Msa0813070:intron | 30.0% | |
| !! | TTGCTAGTCAGTTTGTTAAA+TGG | + | chr5_3:43561448-43561467 | Msa0813070:intron | 30.0% |
| !! | TGCTAGTCAGTTTGTTAAAT+GGG | + | chr5_3:43561449-43561468 | Msa0813070:intron | 30.0% |
| TACTCTTATGCAAATCAGAA+TGG | - | chr5_3:43561722-43561741 | None:intergenic | 30.0% | |
| GAATTCTGTTACAGTATTGT+TGG | - | chr5_3:43561806-43561825 | None:intergenic | 30.0% | |
| TGTAACAGAATTCTGACTTT+GGG | + | chr5_3:43561813-43561832 | Msa0813070:intron | 30.0% | |
| TAACTAAACTGCCAAGAAAT+AGG | - | chr5_3:43561963-43561982 | None:intergenic | 30.0% | |
| TATTTCTTGGCAGTTTAGTT+AGG | + | chr5_3:43561962-43561981 | Msa0813070:intron | 30.0% | |
| CAATTTATTCATGTCTCTTC+AGG | + | chr5_3:43562966-43562985 | Msa0813070:intron | 30.0% | |
| AAAGGAAGACAATATCTCAT+TGG | - | chr5_3:43562992-43563011 | None:intergenic | 30.0% | |
| AGCAATTTCAACATAACGAA+AGG | - | chr5_3:43563167-43563186 | None:intergenic | 30.0% | |
| ACCGTTGCAAAATTTACAAT+TGG | + | chr5_3:43563404-43563423 | Msa0813070:intron | 30.0% | |
| ! | GCCAATTGTAAATTTTGCAA+CGG | - | chr5_3:43563408-43563427 | None:intergenic | 30.0% |
| ATCTGTATTATCATGAAAGC+AGG | + | chr5_3:43563462-43563481 | Msa0813070:intron | 30.0% | |
| GTACAAGATATCTTCTCAAT+AGG | + | chr5_3:43563662-43563681 | Msa0813070:CDS | 30.0% | |
| ! | AATGTGTTACTCTCTTTACT+TGG | + | chr5_3:43563837-43563856 | Msa0813070:intron | 30.0% |
| !! | ATGAATAAGTTTTCAGGCAA+AGG | - | chr5_3:43563886-43563905 | None:intergenic | 30.0% |
| ! | GTTGACATGAATAAGTTTTC+AGG | - | chr5_3:43563892-43563911 | None:intergenic | 30.0% |
| ATTCAAGTGGGAATACATTA+AGG | - | chr5_3:43564156-43564175 | None:intergenic | 30.0% | |
| ! | TTCACCTACTTTGTTTAACA+AGG | - | chr5_3:43564217-43564236 | None:intergenic | 30.0% |
| AGCATGAAAGATATAGACTT+GGG | + | chr5_3:43564258-43564277 | Msa0813070:CDS | 30.0% | |
| ! | ATCATTCCTTAACCTTTTGT+TGG | + | chr5_3:43564372-43564391 | Msa0813070:intron | 30.0% |
| ! | TCATTCCTTAACCTTTTGTT+GGG | + | chr5_3:43564373-43564392 | Msa0813070:intron | 30.0% |
| ! | TTTACTAACTTTTCTCCTAC+AGG | + | chr5_3:43564507-43564526 | Msa0813070:intron | 30.0% |
| GATTCTATGTAGCTATTAAC+TGG | + | chr5_3:43564617-43564636 | Msa0813070:CDS | 30.0% | |
| AAAATACTTTCAGAATGGCT+AGG | + | chr5_3:43564698-43564717 | Msa0813070:three_prime_UTR | 30.0% | |
| AAGAGGAAGGCAATAAAATA+TGG | + | chr5_3:43564931-43564950 | Msa0813070:three_prime_UTR | 30.0% | |
| CAATAAAATATGGCAGTCTT+TGG | + | chr5_3:43564941-43564960 | Msa0813070:intron | 30.0% | |
| ACACATCAAGATTCAACTTT+AGG | + | chr5_3:43564987-43565006 | Msa0813070:intron | 30.0% | |
| GATAATGTCACCAACTTTGT+TGG | - | chr5_3:43558763-43558782 | None:intergenic | 35.0% | |
| GAAATGATGTTCCAAAGATG+TGG | - | chr5_3:43558825-43558844 | None:intergenic | 35.0% | |
| ATGCAGATTCATGAAAGGAT+TGG | + | chr5_3:43559117-43559136 | Msa0813070:CDS | 35.0% | |
| GAAAAAAGAACCAGGTTCTT+TGG | - | chr5_3:43559281-43559300 | None:intergenic | 35.0% | |
| TTCTTCCTTGCTAATTGTAC+CGG | + | chr5_3:43559298-43559317 | Msa0813070:CDS | 35.0% | |
| GTTATGGTTGGAGAAAAAAC+GGG | + | chr5_3:43559450-43559469 | Msa0813070:intron | 35.0% | |
| ATTGTGAATTCTTGGTTGGA+GGG | + | chr5_3:43559712-43559731 | Msa0813070:intron | 35.0% | |
| AGACCCATAGTAGTTAATAG+CGG | + | chr5_3:43559847-43559866 | Msa0813070:intron | 35.0% | |
| CTATCCGCTATTAACTACTA+TGG | - | chr5_3:43559854-43559873 | None:intergenic | 35.0% | |
| ! | TATCCCGCTATAGCATTTTT+GGG | - | chr5_3:43559895-43559914 | None:intergenic | 35.0% |
| ! | AGAGAGAAGCTGAACTTTTT+AGG | + | chr5_3:43560263-43560282 | Msa0813070:intron | 35.0% |
| ! | GAGAGAAGCTGAACTTTTTA+GGG | + | chr5_3:43560264-43560283 | Msa0813070:intron | 35.0% |
| CATAAATATGTAAACCCCCA+GGG | + | chr5_3:43560545-43560564 | Msa0813070:intron | 35.0% | |
| ATAAATATGTAAACCCCCAG+GGG | + | chr5_3:43560546-43560565 | Msa0813070:intron | 35.0% | |
| ATTGAACCTAAGACTTTGAG+AGG | - | chr5_3:43560611-43560630 | None:intergenic | 35.0% | |
| CTTAGGTTCAATTCCTATGT+TGG | + | chr5_3:43560619-43560638 | Msa0813070:intron | 35.0% | |
| ! | AACCAGAACAAAGCTTTGTA+TGG | - | chr5_3:43560651-43560670 | None:intergenic | 35.0% |
| ! | TTTGTCTCAAACTTTAGGAG+TGG | + | chr5_3:43560781-43560800 | Msa0813070:intron | 35.0% |
| ATTGCAGAAACACATGTCAA+AGG | - | chr5_3:43560944-43560963 | None:intergenic | 35.0% | |
| ! | TTTGACATGTGTTTCTGCAA+TGG | + | chr5_3:43560943-43560962 | Msa0813070:intron | 35.0% |
| TTTCTGCAATGGTTGTAAGT+TGG | + | chr5_3:43560954-43560973 | Msa0813070:intron | 35.0% | |
| ATCTGCCAAACTATGTATTG+AGG | + | chr5_3:43560983-43561002 | Msa0813070:intron | 35.0% | |
| ! | TGTGCTGCAAAATGTGTTTT+TGG | + | chr5_3:43561049-43561068 | Msa0813070:intron | 35.0% |
| ! | AAGGTACCTTATTTGGGATT+TGG | + | chr5_3:43561168-43561187 | Msa0813070:intron | 35.0% |
| AAATGACTATTTACTCGGGT+CGG | - | chr5_3:43561380-43561399 | None:intergenic | 35.0% | |
| ACCCGAGTAAATAGTCATTT+GGG | + | chr5_3:43561380-43561399 | Msa0813070:intron | 35.0% | |
| ACCCAAATGACTATTTACTC+GGG | - | chr5_3:43561384-43561403 | None:intergenic | 35.0% | |
| ! | TGTGTTTTCGTTTGTCAGTT+TGG | + | chr5_3:43561482-43561501 | Msa0813070:intron | 35.0% |
| AACGAAGAAGTCACAATGTT+AGG | - | chr5_3:43561525-43561544 | None:intergenic | 35.0% | |
| TAACATTGTGACTTCTTCGT+TGG | + | chr5_3:43561524-43561543 | Msa0813070:intron | 35.0% | |
| AACATTGTGACTTCTTCGTT+GGG | + | chr5_3:43561525-43561544 | Msa0813070:intron | 35.0% | |
| GTCATAACTCTAAGCAACAT+GGG | - | chr5_3:43561578-43561597 | None:intergenic | 35.0% | |
| TGTCATAACTCTAAGCAACA+TGG | - | chr5_3:43561579-43561598 | None:intergenic | 35.0% | |
| ! | TGATTTGCATAAGAGTACAG+TGG | + | chr5_3:43561725-43561744 | Msa0813070:intron | 35.0% |
| TGCAACTAGATGTAGTTAAC+TGG | + | chr5_3:43561759-43561778 | Msa0813070:intron | 35.0% | |
| CTGTAACAGAATTCTGACTT+TGG | + | chr5_3:43561812-43561831 | Msa0813070:intron | 35.0% | |
| ! | AGAATTCTGACTTTGGGAAA+AGG | + | chr5_3:43561819-43561838 | Msa0813070:intron | 35.0% |
| ! | GAATTCTGACTTTGGGAAAA+GGG | + | chr5_3:43561820-43561839 | Msa0813070:intron | 35.0% |
| ATTCTTAATAGCCTAGGACT+TGG | + | chr5_3:43561861-43561880 | Msa0813070:intron | 35.0% | |
| TTTGCAGCTAAGAATGAAGA+TGG | + | chr5_3:43561886-43561905 | Msa0813070:intron | 35.0% | |
| TTGCAGCTAAGAATGAAGAT+GGG | + | chr5_3:43561887-43561906 | Msa0813070:intron | 35.0% | |
| !! | CGATTTTCCTTCCTATTTCT+TGG | + | chr5_3:43561949-43561968 | Msa0813070:intron | 35.0% |
| TAAACTGCCAAGAAATAGGA+AGG | - | chr5_3:43561959-43561978 | None:intergenic | 35.0% | |
| ! | GTGAAACATCGTATTTTTCC+TGG | + | chr5_3:43562111-43562130 | Msa0813070:intron | 35.0% |
| ! | TTTTGTTCGTTGCTGTCTAA+AGG | - | chr5_3:43562178-43562197 | None:intergenic | 35.0% |
| TTTAGACAGCAACGAACAAA+AGG | + | chr5_3:43562177-43562196 | Msa0813070:intron | 35.0% | |
| TTAGACAGCAACGAACAAAA+GGG | + | chr5_3:43562178-43562197 | Msa0813070:intron | 35.0% | |
| ! | AAAGGGTGTGATACTAGTAT+TGG | + | chr5_3:43562195-43562214 | Msa0813070:intron | 35.0% |
| AATCACTGTGCAGCTTAATT+TGG | + | chr5_3:43562231-43562250 | Msa0813070:intron | 35.0% | |
| ATCACTGTGCAGCTTAATTT+GGG | + | chr5_3:43562232-43562251 | Msa0813070:intron | 35.0% | |
| !!! | AGTCTGACACATTGTTTTGA+AGG | + | chr5_3:43562257-43562276 | Msa0813070:intron | 35.0% |
| TAGGAGATTGTAAACTTCCA+GGG | - | chr5_3:43562324-43562343 | None:intergenic | 35.0% | |
| ATAGGAGATTGTAAACTTCC+AGG | - | chr5_3:43562325-43562344 | None:intergenic | 35.0% | |
| AACTCCATGAATTCCAAAAG+TGG | - | chr5_3:43562382-43562401 | None:intergenic | 35.0% | |
| ! | ATTGGCTTCTATGAACTCTA+AGG | - | chr5_3:43562871-43562890 | None:intergenic | 35.0% |
| ! | GTTCATAGAAGCCAATTTTG+TGG | + | chr5_3:43562875-43562894 | Msa0813070:intron | 35.0% |
| TGTTGAAATTGCTATCAGTC+AGG | + | chr5_3:43563174-43563193 | Msa0813070:intron | 35.0% | |
| TATACTTAACGATGGTACTG+AGG | + | chr5_3:43563245-43563264 | Msa0813070:CDS | 35.0% | |
| ! | ATTGGCAGCTGATTTCTATA+TGG | + | chr5_3:43563422-43563441 | Msa0813070:intron | 35.0% |
| !! | AGTGGATTTGTTGAAAGTAC+CGG | + | chr5_3:43563692-43563711 | Msa0813070:CDS | 35.0% |
| TTGAATTCCTGTCAATGTGT+AGG | + | chr5_3:43563757-43563776 | Msa0813070:intron | 35.0% | |
| GTAACACATTCAGAATGGAA+TGG | - | chr5_3:43563827-43563846 | None:intergenic | 35.0% | |
| AGAGAGTAACACATTCAGAA+TGG | - | chr5_3:43563832-43563851 | None:intergenic | 35.0% | |
| GTCTATTTGTGAGACTGTTT+AGG | + | chr5_3:43563917-43563936 | Msa0813070:intron | 35.0% | |
| TATTTGTGAGACTGTTTAGG+AGG | + | chr5_3:43563920-43563939 | Msa0813070:intron | 35.0% | |
| ATTTGTGAGACTGTTTAGGA+GGG | + | chr5_3:43563921-43563940 | Msa0813070:intron | 35.0% | |
| TTTATTTCCATAAGCTCTCC+AGG | + | chr5_3:43563985-43564004 | Msa0813070:intron | 35.0% | |
| CAGCATGAAAGATATAGACT+TGG | + | chr5_3:43564257-43564276 | Msa0813070:CDS | 35.0% | |
| GCATGAAAGATATAGACTTG+GGG | + | chr5_3:43564259-43564278 | Msa0813070:CDS | 35.0% | |
| AAATTACCTTGTTCTGTCTG+AGG | - | chr5_3:43564350-43564369 | None:intergenic | 35.0% | |
| ! | CATTCCTTAACCTTTTGTTG+GGG | + | chr5_3:43564374-43564393 | Msa0813070:intron | 35.0% |
| !!! | GTTTTCTCAGTTGGTTTGTT+TGG | + | chr5_3:43564554-43564573 | Msa0813070:CDS | 35.0% |
| !!! | TGGGCTACAACTTTTGTTTT+TGG | + | chr5_3:43564637-43564656 | Msa0813070:CDS | 35.0% |
| CTAAATAGGTTTACGCTCTT+TGG | - | chr5_3:43564731-43564750 | None:intergenic | 35.0% | |
| !! | GCTTTATTTGTTTGCATTGC+AGG | + | chr5_3:43564792-43564811 | Msa0813070:intron | 35.0% |
| GCATTGCAGGTCATTATTAA+AGG | + | chr5_3:43564805-43564824 | Msa0813070:intron | 35.0% | |
| ! | TTCTAGTTAGCTGAACAACA+AGG | + | chr5_3:43564841-43564860 | Msa0813070:three_prime_UTR | 35.0% |
| GGAACTGTACTTGTTCAATT+TGG | + | chr5_3:43564862-43564881 | Msa0813070:three_prime_UTR | 35.0% | |
| AGAAATTGTTGGCACTTGAA+AGG | + | chr5_3:43564886-43564905 | Msa0813070:three_prime_UTR | 35.0% | |
| ACTCAAAAGATAGCTTGAAG+AGG | + | chr5_3:43564914-43564933 | Msa0813070:three_prime_UTR | 35.0% | |
| AAAAGATAGCTTGAAGAGGA+AGG | + | chr5_3:43564918-43564937 | Msa0813070:three_prime_UTR | 35.0% | |
| !! | ACATGAAAACTGGTTTGTTG+TGG | - | chr5_3:43565035-43565054 | None:intergenic | 35.0% |
| ! | CTCATGTCTCGTACAATTTT+AGG | - | chr5_3:43565143-43565162 | None:intergenic | 35.0% |
| ! | GGGTTTGAAAAGTTGTTTCG+TGG | - | chr5_3:43558933-43558952 | None:intergenic | 40.0% |
| TCCTTTCATGAATCTGCATC+CGG | - | chr5_3:43559116-43559135 | None:intergenic | 40.0% | |
| TGAAAACCATGTGATTACGC+GGG | - | chr5_3:43559174-43559193 | None:intergenic | 40.0% | |
| GTGAAAACCATGTGATTACG+CGG | - | chr5_3:43559175-43559194 | None:intergenic | 40.0% | |
| ! | CATGGTTTTCACACCTCTTT+TGG | + | chr5_3:43559183-43559202 | Msa0813070:CDS | 40.0% |
| ACACAAGTAGAAGCCAAAAG+AGG | - | chr5_3:43559199-43559218 | None:intergenic | 40.0% | |
| !!! | CTTTTGGCTTCTACTTGTGT+TGG | + | chr5_3:43559199-43559218 | Msa0813070:CDS | 40.0% |
| GCAAGGAAGAAAAAAGAACC+AGG | - | chr5_3:43559289-43559308 | None:intergenic | 40.0% | |
| TGATACCGGTACAATTAGCA+AGG | - | chr5_3:43559306-43559325 | None:intergenic | 40.0% | |
| CTAGCGAAAGACACATTCTA+GGG | - | chr5_3:43559596-43559615 | None:intergenic | 40.0% | |
| ACTAGCGAAAGACACATTCT+AGG | - | chr5_3:43559597-43559616 | None:intergenic | 40.0% | |
| CATTGTGAATTCTTGGTTGG+AGG | + | chr5_3:43559711-43559730 | Msa0813070:intron | 40.0% | |
| ! | ATCCCGCTATAGCATTTTTG+GGG | - | chr5_3:43559894-43559913 | None:intergenic | 40.0% |
| ! | CTATCCCGCTATAGCATTTT+TGG | - | chr5_3:43559896-43559915 | None:intergenic | 40.0% |
| TAGAGGAAGATTTACAGCAG+AGG | + | chr5_3:43560134-43560153 | Msa0813070:intron | 40.0% | |
| TGGTCCATAGTAGTCAATAG+CGG | - | chr5_3:43560488-43560507 | None:intergenic | 40.0% | |
| GCATAAATATGTAAACCCCC+AGG | + | chr5_3:43560544-43560563 | Msa0813070:intron | 40.0% | |
| !! | GTCCATACAAAGCTTTGTTC+TGG | + | chr5_3:43560646-43560665 | Msa0813070:intron | 40.0% |
| GAAACACATGTCAAAGGCAA+AGG | - | chr5_3:43560938-43560957 | None:intergenic | 40.0% | |
| ACTAGTTAGGGTAGGATAGA+AGG | - | chr5_3:43561259-43561278 | None:intergenic | 40.0% | |
| ACCAAGCATCTCACTAGTTA+GGG | - | chr5_3:43561271-43561290 | None:intergenic | 40.0% | |
| AACCAAGCATCTCACTAGTT+AGG | - | chr5_3:43561272-43561291 | None:intergenic | 40.0% | |
| GACCCGAGTAAATAGTCATT+TGG | + | chr5_3:43561379-43561398 | Msa0813070:intron | 40.0% | |
| TGACTAGCAAAAGACACTCA+GGG | - | chr5_3:43561438-43561457 | None:intergenic | 40.0% | |
| CTTCGTTGGGTGTTCATTAT+TGG | + | chr5_3:43561538-43561557 | Msa0813070:intron | 40.0% | |
| ! | CTGAGAGGCATAGAAAGTAA+AGG | + | chr5_3:43561639-43561658 | Msa0813070:intron | 40.0% |
| CAGTATTGTTGGTCACAGTT+AGG | - | chr5_3:43561795-43561814 | None:intergenic | 40.0% | |
| TGCAGCTAAGAATGAAGATG+GGG | + | chr5_3:43561888-43561907 | Msa0813070:intron | 40.0% | |
| CAATGTGAGACTGTAACTGA+AGG | + | chr5_3:43562282-43562301 | Msa0813070:CDS | 40.0% | |
| CCATGAATTCCAAAAGTGGT+GGG | - | chr5_3:43562378-43562397 | None:intergenic | 40.0% | |
| TCCATGAATTCCAAAAGTGG+TGG | - | chr5_3:43562379-43562398 | None:intergenic | 40.0% | |
| CGTCAGACATCATCAAATTG+AGG | - | chr5_3:43562467-43562486 | None:intergenic | 40.0% | |
| CAGGAAAATTATCGCAAACC+TGG | - | chr5_3:43562492-43562511 | None:intergenic | 40.0% | |
| !! | TCTGTAACTGATTTGGATGC+AGG | + | chr5_3:43562551-43562570 | Msa0813070:intron | 40.0% |
| !! | CTGTAACTGATTTGGATGCA+GGG | + | chr5_3:43562552-43562571 | Msa0813070:intron | 40.0% |
| ! | TGATTTGGATGCAGGGATTT+CGG | + | chr5_3:43562559-43562578 | Msa0813070:intron | 40.0% |
| TTTCGGAAGAGGAGAAGAAA+AGG | + | chr5_3:43562576-43562595 | Msa0813070:CDS | 40.0% | |
| TCAGAGATATGCTCATGTGA+AGG | + | chr5_3:43562685-43562704 | Msa0813070:CDS | 40.0% | |
| TAAAGCTCACCTTTGTCAAC+TGG | - | chr5_3:43563044-43563063 | None:intergenic | 40.0% | |
| ! | AATTTTGCAACGGTTGTCCA+TGG | - | chr5_3:43563398-43563417 | None:intergenic | 40.0% |
| TCATGAAAGCAGGATCACAT+TGG | + | chr5_3:43563472-43563491 | Msa0813070:intron | 40.0% | |
| GTACAAAGTTCTCTCTTCAC+AGG | + | chr5_3:43563606-43563625 | Msa0813070:intron | 40.0% | |
| AAGTTCTCTCTTCACAGGAT+TGG | + | chr5_3:43563611-43563630 | Msa0813070:intron | 40.0% | |
| !! | ACAGGATTGGTATTGATGAG+TGG | + | chr5_3:43563624-43563643 | Msa0813070:intron | 40.0% |
| GAGAAGATATCTTGTACCGA+AGG | - | chr5_3:43563659-43563678 | None:intergenic | 40.0% | |
| TTCCTGTCAATGTGTAGGTT+TGG | + | chr5_3:43563762-43563781 | Msa0813070:intron | 40.0% | |
| AACCAAACCTACACATTGAC+AGG | - | chr5_3:43563767-43563786 | None:intergenic | 40.0% | |
| TCAGAATGGAATGGCGTTTA+GGG | - | chr5_3:43563818-43563837 | None:intergenic | 40.0% | |
| TTCAGAATGGAATGGCGTTT+AGG | - | chr5_3:43563819-43563838 | None:intergenic | 40.0% | |
| TCTGCTTTCATAAGCTATCC+TGG | - | chr5_3:43564006-43564025 | None:intergenic | 40.0% | |
| GAATACATTAAGGCCCTGTT+TGG | - | chr5_3:43564146-43564165 | None:intergenic | 40.0% | |
| TATTCCCACTTGAATTCCAC+AGG | + | chr5_3:43564161-43564180 | Msa0813070:intron | 40.0% | |
| !! | GCAGCCTTGTTAAACAAAGT+AGG | + | chr5_3:43564210-43564229 | Msa0813070:CDS | 40.0% |
| AACAAAGTAGGTGAAGCCAA+TGG | + | chr5_3:43564222-43564241 | Msa0813070:CDS | 40.0% | |
| TATCTTTCATGCTGTCTGCA+CGG | - | chr5_3:43564251-43564270 | None:intergenic | 40.0% | |
| ! | CAGTTTGTTTACAAGCACCT+TGG | + | chr5_3:43564285-43564304 | Msa0813070:CDS | 40.0% |
| TTACAAGCACCTTGGAAGTA+TGG | + | chr5_3:43564293-43564312 | Msa0813070:CDS | 40.0% | |
| TAAGCCCCAACAAAAGGTTA+AGG | - | chr5_3:43564381-43564400 | None:intergenic | 40.0% | |
| ! | ACCTTTTGTTGGGGCTTATT+CGG | + | chr5_3:43564383-43564402 | Msa0813070:intron | 40.0% |
| ! | CGACATAGAGTTCCTTTTGT+TGG | + | chr5_3:43564457-43564476 | Msa0813070:intron | 40.0% |
| TTTCTCCTACAGGATGCAAA+AGG | + | chr5_3:43564517-43564536 | Msa0813070:intron | 40.0% | |
| ! | ACAATCCTTTTGCATCCTGT+AGG | - | chr5_3:43564525-43564544 | None:intergenic | 40.0% |
| ! | ATCTAACTCGTGTCATTAGC+TGG | + | chr5_3:43564587-43564606 | Msa0813070:CDS | 40.0% |
| !! | GGCTGCTTGTCTGCTTTTAT+GGG | - | chr5_3:43558741-43558760 | None:intergenic | 45.0% |
| ! | TTCCAAAGATGTGGGCTGAT+GGG | - | chr5_3:43558816-43558835 | None:intergenic | 45.0% |
| GAGAGAGAAGAGTGAGAGAT+GGG | - | chr5_3:43558985-43559004 | None:intergenic | 45.0% | |
| GAAAACCATGTGATTACGCG+GGG | - | chr5_3:43559173-43559192 | None:intergenic | 45.0% | |
| ! | CCAGGTTCTTTGGAAATAGC+AGG | - | chr5_3:43559271-43559290 | None:intergenic | 45.0% |
| !! | CCTGCTATTTCCAAAGAACC+TGG | + | chr5_3:43559268-43559287 | Msa0813070:CDS | 45.0% |
| !! | TCACAGCTCTAAGCAACATG+GGG | - | chr5_3:43559761-43559780 | None:intergenic | 45.0% |
| !! | GTCACAGCTCTAAGCAACAT+GGG | - | chr5_3:43559762-43559781 | None:intergenic | 45.0% |
| !! | TGTCACAGCTCTAAGCAACA+TGG | - | chr5_3:43559763-43559782 | None:intergenic | 45.0% |
| !!! | CGCTATAGCATTTTTGGGGT+CGG | - | chr5_3:43559890-43559909 | None:intergenic | 45.0% |
| CGACCCCAAAAATGCTATAG+CGG | + | chr5_3:43559888-43559907 | Msa0813070:intron | 45.0% | |
| GACCCCAAAAATGCTATAGC+GGG | + | chr5_3:43559889-43559908 | Msa0813070:intron | 45.0% | |
| CAGAAACAGAGAGAGCAGAA+TGG | + | chr5_3:43560002-43560021 | Msa0813070:intron | 45.0% | |
| AGAGAGAGCAGAATGGAGTT+TGG | + | chr5_3:43560009-43560028 | Msa0813070:intron | 45.0% | |
| GAGCAAACACGACAAAGTAG+AGG | + | chr5_3:43560117-43560136 | Msa0813070:intron | 45.0% | |
| ! | AACGCTTCGTAGCAGTTTTG+CGG | - | chr5_3:43560379-43560398 | None:intergenic | 45.0% |
| TATCTCACACCGCAACACTA+TGG | + | chr5_3:43560406-43560425 | Msa0813070:intron | 45.0% | |
| CACAACAAGCCATAGTGTTG+CGG | - | chr5_3:43560418-43560437 | None:intergenic | 45.0% | |
| TAGTCAATAGCGGCCAATAG+CGG | - | chr5_3:43560478-43560497 | None:intergenic | 45.0% | |
| ! | TTGGCCGCTATTGACTACTA+TGG | + | chr5_3:43560481-43560500 | Msa0813070:intron | 45.0% |
| ! | TGGTCTGGTGATGTAGGATA+AGG | + | chr5_3:43560570-43560589 | Msa0813070:intron | 45.0% |
| GTGATGTAGGATAAGGACCT+CGG | + | chr5_3:43560577-43560596 | Msa0813070:intron | 45.0% | |
| TGTGCTCCTCTCAAAGTCTT+AGG | + | chr5_3:43560602-43560621 | Msa0813070:intron | 45.0% | |
| ! | TGTATGGACTGACCCAACAT+AGG | - | chr5_3:43560635-43560654 | None:intergenic | 45.0% |
| TAATCCCACCGTTAACTAGC+TGG | - | chr5_3:43560687-43560706 | None:intergenic | 45.0% | |
| AGCATCTCACTAGTTAGGGT+AGG | - | chr5_3:43561267-43561286 | None:intergenic | 45.0% | |
| ACCCTAACTAGTGAGATGCT+TGG | + | chr5_3:43561267-43561286 | Msa0813070:intron | 45.0% | |
| TTCAAAGCAGTTCCTGACAC+TGG | + | chr5_3:43561315-43561334 | Msa0813070:intron | 45.0% | |
| AAGACACTCAGGGACTATAG+TGG | - | chr5_3:43561428-43561447 | None:intergenic | 45.0% | |
| CTGACTAGCAAAAGACACTC+AGG | - | chr5_3:43561439-43561458 | None:intergenic | 45.0% | |
| GTTATGCAACAAGCCAAACC+AGG | + | chr5_3:43561910-43561929 | Msa0813070:intron | 45.0% | |
| CAGAACACGCAACAGTACTA+CGG | - | chr5_3:43562035-43562054 | None:intergenic | 45.0% | |
| AACTGAAGGAACACAGACAC+TGG | + | chr5_3:43562296-43562315 | Msa0813070:CDS | 45.0% | |
| !!! | CCCACCACTTTTGGAATTCA+TGG | + | chr5_3:43562375-43562394 | Msa0813070:CDS | 45.0% |
| TCGTGAAGTTTACCATGCAC+AGG | + | chr5_3:43562422-43562441 | Msa0813070:CDS | 45.0% | |
| !! | TTGATGATGTCTGACGTTCC+AGG | + | chr5_3:43562471-43562490 | Msa0813070:CDS | 45.0% |
| GAAAAGGCTGTTACACTGTG+TGG | + | chr5_3:43562592-43562611 | Msa0813070:CDS | 45.0% | |
| CTGTTACACTGTGTGGTTGT+CGG | + | chr5_3:43562599-43562618 | Msa0813070:CDS | 45.0% | |
| CCACTAAATTCAACTCCCGT+AGG | - | chr5_3:43562632-43562651 | None:intergenic | 45.0% | |
| CCTACGGGAGTTGAATTTAG+TGG | + | chr5_3:43562629-43562648 | Msa0813070:CDS | 45.0% | |
| AACAGTCATCTTGCTCTTGC+TGG | + | chr5_3:43562800-43562819 | Msa0813070:intron | 45.0% | |
| ! | CTTCCTTTGATGACCGACTT+AGG | + | chr5_3:43563004-43563023 | Msa0813070:CDS | 45.0% |
| ! | GATGGTACTGAGGTTCCATA+CGG | + | chr5_3:43563255-43563274 | Msa0813070:CDS | 45.0% |
| ! | ATGGTACTGAGGTTCCATAC+GGG | + | chr5_3:43563256-43563275 | Msa0813070:CDS | 45.0% |
| AGCGAGTGGATAAAAGGTGA+TGG | - | chr5_3:43563309-43563328 | None:intergenic | 45.0% | |
| ! | ATCACCTTTTATCCACTCGC+TGG | + | chr5_3:43563308-43563327 | Msa0813070:CDS | 45.0% |
| AGATCCAGCGAGTGGATAAA+AGG | - | chr5_3:43563315-43563334 | None:intergenic | 45.0% | |
| ACCTTCCACCAGGAGATTTA+GGG | - | chr5_3:43563338-43563357 | None:intergenic | 45.0% | |
| AACCTTCCACCAGGAGATTT+AGG | - | chr5_3:43563339-43563358 | None:intergenic | 45.0% | |
| GAGTAAACAAACCTTCCACC+AGG | - | chr5_3:43563348-43563367 | None:intergenic | 45.0% | |
| TTCTCAATAGGTGACTGCAG+TGG | + | chr5_3:43563674-43563693 | Msa0813070:CDS | 45.0% | |
| !!! | AGCAGGAAGTGTTGGTTTTC+CGG | - | chr5_3:43563714-43563733 | None:intergenic | 45.0% |
| AAAGTTACTTGGGCAAGAGC+AGG | - | chr5_3:43563731-43563750 | None:intergenic | 45.0% | |
| AGACTGTTTAGGAGGGCTTA+TGG | + | chr5_3:43563928-43563947 | Msa0813070:intron | 45.0% | |
| AAGCTATCCTGGAGAGCTTA+TGG | - | chr5_3:43563995-43564014 | None:intergenic | 45.0% | |
| GCTACCTGTGGAATTCAAGT+GGG | - | chr5_3:43564168-43564187 | None:intergenic | 45.0% | |
| TGCTACCTGTGGAATTCAAG+TGG | - | chr5_3:43564169-43564188 | None:intergenic | 45.0% | |
| AAAGTAGGTGAAGCCAATGG+AGG | + | chr5_3:43564225-43564244 | Msa0813070:CDS | 45.0% | |
| CAACAGTTGCCATACTTCCA+AGG | - | chr5_3:43564305-43564324 | None:intergenic | 45.0% | |
| ! | CTTGGAAGTATGGCAACTGT+TGG | + | chr5_3:43564303-43564322 | Msa0813070:CDS | 45.0% |
| GGCAACTGTTGGAAGTTACA+AGG | + | chr5_3:43564314-43564333 | Msa0813070:CDS | 45.0% | |
| AGTAGACCTCAGACAGAACA+AGG | + | chr5_3:43564341-43564360 | Msa0813070:CDS | 45.0% | |
| ACCGAATAAGCCCCAACAAA+AGG | - | chr5_3:43564387-43564406 | None:intergenic | 45.0% | |
| GCATAGTATCCCAGGAGAAT+GGG | + | chr5_3:43564413-43564432 | Msa0813070:intron | 45.0% | |
| CATAGTATCCCAGGAGAATG+GGG | + | chr5_3:43564414-43564433 | Msa0813070:intron | 45.0% | |
| TCGAGCACAGATAATTCCAG+TGG | - | chr5_3:43564440-43564459 | None:intergenic | 45.0% | |
| GGATGCAAAAGGATTGTCTC+TGG | + | chr5_3:43564528-43564547 | Msa0813070:intron | 45.0% | |
| ! | TAACTCGTGTCATTAGCTGG+AGG | + | chr5_3:43564590-43564609 | Msa0813070:CDS | 45.0% |
| !! | GGGCTGCTTGTCTGCTTTTA+TGG | - | chr5_3:43558742-43558761 | None:intergenic | 50.0% |
| GACAAGCAGCCCAACAAAGT+TGG | + | chr5_3:43558750-43558769 | Msa0813070:five_prime_UTR | 50.0% | |
| ! | AAGATGTGGGCTGATGGGAT+GGG | - | chr5_3:43558811-43558830 | None:intergenic | 50.0% |
| ! | AAAGATGTGGGCTGATGGGA+TGG | - | chr5_3:43558812-43558831 | None:intergenic | 50.0% |
| ATCCCATCAGCCCACATCTT+TGG | + | chr5_3:43558811-43558830 | Msa0813070:five_prime_UTR | 50.0% | |
| ! | GTTCCAAAGATGTGGGCTGA+TGG | - | chr5_3:43558817-43558836 | None:intergenic | 50.0% |
| !! | AGAAGGGTTGGTCGAGTATG+GGG | - | chr5_3:43558954-43558973 | None:intergenic | 50.0% |
| !! | GAGAAGGGTTGGTCGAGTAT+GGG | - | chr5_3:43558955-43558974 | None:intergenic | 50.0% |
| !! | TGAGAAGGGTTGGTCGAGTA+TGG | - | chr5_3:43558956-43558975 | None:intergenic | 50.0% |
| GAGATGGGAAGAGGTGAGAA+GGG | - | chr5_3:43558970-43558989 | None:intergenic | 50.0% | |
| AGAGATGGGAAGAGGTGAGA+AGG | - | chr5_3:43558971-43558990 | None:intergenic | 50.0% | |
| GAAGAGTGAGAGATGGGAAG+AGG | - | chr5_3:43558979-43558998 | None:intergenic | 50.0% | |
| CGAGAGAGAAGAGTGAGAGA+TGG | - | chr5_3:43558986-43559005 | None:intergenic | 50.0% | |
| GCCGGATGCAGATTCATGAA+AGG | + | chr5_3:43559112-43559131 | Msa0813070:CDS | 50.0% | |
| TGTATCCCCGCGTAATCACA+TGG | + | chr5_3:43559165-43559184 | Msa0813070:CDS | 50.0% | |
| CTGTTGCTGAACCTGTTGCT+AGG | + | chr5_3:43559239-43559258 | Msa0813070:CDS | 50.0% | |
| ! | GCAGGTTGAATCCTAGCAAC+AGG | - | chr5_3:43559253-43559272 | None:intergenic | 50.0% |
| GGACGTGCATATTGCCTAAG+AGG | + | chr5_3:43559382-43559401 | Msa0813070:intron | 50.0% | |
| CTTGGTTGGAGGGTCATTGT+TGG | + | chr5_3:43559722-43559741 | Msa0813070:intron | 50.0% | |
| AGTGTTGCGGTGTGAGATAG+CGG | - | chr5_3:43560405-43560424 | None:intergenic | 50.0% | |
| ATATGTAAACCCCCAGGGGT+TGG | + | chr5_3:43560550-43560569 | Msa0813070:intron | 50.0% | |
| TGACCCTGCCAGCTAGTTAA+CGG | + | chr5_3:43560676-43560695 | Msa0813070:intron | 50.0% | |
| !! | GATTAGTCCCGCGGATTAGT+GGG | + | chr5_3:43560702-43560721 | Msa0813070:intron | 50.0% |
| CCAATTACCCACTAATCCGC+GGG | - | chr5_3:43560712-43560731 | None:intergenic | 50.0% | |
| CCCAATTACCCACTAATCCG+CGG | - | chr5_3:43560713-43560732 | None:intergenic | 50.0% | |
| !! | CCGCGGATTAGTGGGTAATT+GGG | + | chr5_3:43560710-43560729 | Msa0813070:intron | 50.0% |
| ! | GGATTAGTGGGTAATTGGGC+AGG | + | chr5_3:43560714-43560733 | Msa0813070:intron | 50.0% |
| AGCTGCAAACACCAAGTCCT+AGG | - | chr5_3:43561875-43561894 | None:intergenic | 50.0% | |
| ATGCAACAAGCCAAACCAGG+AGG | + | chr5_3:43561913-43561932 | Msa0813070:intron | 50.0% | |
| GTTCAACACTCCTCCTGGTT+TGG | - | chr5_3:43561926-43561945 | None:intergenic | 50.0% | |
| CGAAAGTTCAACACTCCTCC+TGG | - | chr5_3:43561931-43561950 | None:intergenic | 50.0% | |
| ACGCAACAGTACTACGGCTA+TGG | - | chr5_3:43562029-43562048 | None:intergenic | 50.0% | |
| TGCGACGAATTTCCTGTGCA+TGG | - | chr5_3:43562437-43562456 | None:intergenic | 50.0% | |
| TTACACTGTGTGGTTGTCGG+AGG | + | chr5_3:43562602-43562621 | Msa0813070:CDS | 50.0% | |
| GTGCCTAAGTCGGTCATCAA+AGG | - | chr5_3:43563010-43563029 | None:intergenic | 50.0% | |
| CACCTTTGTCAACTGGTTGG+TGG | - | chr5_3:43563037-43563056 | None:intergenic | 50.0% | |
| GCTCACCTTTGTCAACTGGT+TGG | - | chr5_3:43563040-43563059 | None:intergenic | 50.0% | |
| ! | TTCCATACGGGTTGCTGGTT+TGG | + | chr5_3:43563268-43563287 | Msa0813070:CDS | 50.0% |
| !! | CTGGTTTGGTCTACTGGAGT+TGG | + | chr5_3:43563282-43563301 | Msa0813070:CDS | 50.0% |
| ATTTAGGGAGATCCAGCGAG+TGG | - | chr5_3:43563323-43563342 | None:intergenic | 50.0% | |
| CTGGATCTCCCTAAATCTCC+TGG | + | chr5_3:43563327-43563346 | Msa0813070:CDS | 50.0% | |
| GATCTCCCTAAATCTCCTGG+TGG | + | chr5_3:43563330-43563349 | Msa0813070:CDS | 50.0% | |
| TCCCTAAATCTCCTGGTGGA+AGG | + | chr5_3:43563334-43563353 | Msa0813070:CDS | 50.0% | |
| TGAGTGGCTTCGTGTTCCTT+CGG | + | chr5_3:43563640-43563659 | Msa0813070:CDS | 50.0% | |
| GTCTTCACGCATAGTATCCC+AGG | + | chr5_3:43564405-43564424 | Msa0813070:intron | 50.0% | |
| CGCATAGTATCCCAGGAGAA+TGG | + | chr5_3:43564412-43564431 | Msa0813070:intron | 50.0% | |
| GCAAAAGGATTGTCTCTGGC+AGG | + | chr5_3:43564532-43564551 | Msa0813070:CDS | 50.0% | |
| ! | CTCTGGCAGGTTTTCTCAGT+TGG | + | chr5_3:43564545-43564564 | Msa0813070:CDS | 50.0% |
| !! | CAGTTGGTTTGTTTGGCGCT+CGG | + | chr5_3:43564561-43564580 | Msa0813070:CDS | 50.0% |
| !! | GAAGGGTTGGTCGAGTATGG+GGG | - | chr5_3:43558953-43558972 | None:intergenic | 55.0% |
| TGGGAAGAGGTGAGAAGGGT+TGG | - | chr5_3:43558966-43558985 | None:intergenic | 55.0% | |
| CGCTTCTCCACTTCAACACC+CGG | + | chr5_3:43559004-43559023 | Msa0813070:CDS | 55.0% | |
| !! | GGTTGAACCGGGTGTTGAAG+TGG | - | chr5_3:43559014-43559033 | None:intergenic | 55.0% |
| !! | GGCTTCTCGTGTGGTTTGGT+TGG | - | chr5_3:43559064-43559083 | None:intergenic | 55.0% |
| !! | TGGCTTGTTGTGTAGCGCTC+CGG | + | chr5_3:43560426-43560445 | Msa0813070:intron | 55.0% |
| ACATCACCAGACCAACCCCT+GGG | - | chr5_3:43560564-43560583 | None:intergenic | 55.0% | |
| TACATCACCAGACCAACCCC+TGG | - | chr5_3:43560565-43560584 | None:intergenic | 55.0% | |
| !! | AGGGGTTGGTCTGGTGATGT+AGG | + | chr5_3:43560564-43560583 | Msa0813070:intron | 55.0% |
| ! | TTTGAGAGGAGCACACTCCG+AGG | - | chr5_3:43560597-43560616 | None:intergenic | 55.0% |
| CCACCGTTAACTAGCTGGCA+GGG | - | chr5_3:43560682-43560701 | None:intergenic | 55.0% | |
| CCTGCCAGCTAGTTAACGGT+GGG | + | chr5_3:43560680-43560699 | Msa0813070:intron | 55.0% | |
| !! | TAACGGTGGGATTAGTCCCG+CGG | + | chr5_3:43560693-43560712 | Msa0813070:intron | 55.0% |
| !! | GGATTAGTCCCGCGGATTAG+TGG | + | chr5_3:43560701-43560720 | Msa0813070:intron | 55.0% |
| !! | CCCGCGGATTAGTGGGTAAT+TGG | + | chr5_3:43560709-43560728 | Msa0813070:intron | 55.0% |
| GAACACAGACACTGGATCCC+TGG | + | chr5_3:43562304-43562323 | Msa0813070:CDS | 55.0% | |
| ! | GGAGCACAACCCACCACTTT+TGG | + | chr5_3:43562366-43562385 | Msa0813070:CDS | 55.0% |
| GGATGCAGGGATTTCGGAAG+AGG | + | chr5_3:43562565-43562584 | Msa0813070:intron | 55.0% | |
| ! | TGGTGGCGTAGTGCCTAAGT+CGG | - | chr5_3:43563020-43563039 | None:intergenic | 55.0% |
| CGCCACCAACCAGTTGACAA+AGG | + | chr5_3:43563032-43563051 | Msa0813070:CDS | 55.0% | |
| ! | TCAGGAGTGCGACTTGTTCG+AGG | + | chr5_3:43563192-43563211 | Msa0813070:CDS | 55.0% |
| ! | TGAGGTTCCATACGGGTTGC+TGG | + | chr5_3:43563263-43563282 | Msa0813070:CDS | 55.0% |
| GACCAAACCAGCAACCCGTA+TGG | - | chr5_3:43563273-43563292 | None:intergenic | 55.0% | |
| !! | GGGTTGCTGGTTTGGTCTAC+TGG | + | chr5_3:43563276-43563295 | Msa0813070:CDS | 55.0% |
| ! | TGGGCAAGAGCAGGAAGTGT+TGG | - | chr5_3:43563722-43563741 | None:intergenic | 55.0% |
| CCTTGTCTCTCTGCTACCTG+TGG | - | chr5_3:43564180-43564199 | None:intergenic | 55.0% | |
| CCACAGGTAGCAGAGAGACA+AGG | + | chr5_3:43564177-43564196 | Msa0813070:intron | 55.0% | |
| AACACCCGGTTCAACCGCTC+CGG | + | chr5_3:43559018-43559037 | Msa0813070:CDS | 60.0% | |
| ! | AACCGCTCCGGTTCGCTATG+CGG | + | chr5_3:43559030-43559049 | Msa0813070:CDS | 60.0% |
| GCGTGGCTTCTCGTGTGGTT+TGG | - | chr5_3:43559068-43559087 | None:intergenic | 60.0% | |
| AAGCCACGCGTGGTGGTTCT+CGG | + | chr5_3:43559079-43559098 | Msa0813070:CDS | 60.0% | |
| !! | TGGTGGTTCTCGGCACTGGT+TGG | + | chr5_3:43559089-43559108 | Msa0813070:CDS | 60.0% |
| !! | GGTGGTTCTCGGCACTGGTT+GGG | + | chr5_3:43559090-43559109 | Msa0813070:CDS | 60.0% |
| ! | TAGCGGATAGCAGCGCGTAG+CGG | + | chr5_3:43559864-43559883 | Msa0813070:intron | 60.0% |
| GGCCAATAGCGGCGCTATAG+CGG | - | chr5_3:43560467-43560486 | None:intergenic | 60.0% | |
| !! | TAAACCCCCAGGGGTTGGTC+TGG | + | chr5_3:43560555-43560574 | Msa0813070:intron | 60.0% |
| ATCACCAGACCAACCCCTGG+GGG | - | chr5_3:43560562-43560581 | None:intergenic | 60.0% | |
| CATCACCAGACCAACCCCTG+GGG | - | chr5_3:43560563-43560582 | None:intergenic | 60.0% | |
| CCCTGCCAGCTAGTTAACGG+TGG | + | chr5_3:43560679-43560698 | Msa0813070:intron | 60.0% | |
| CCCACCGTTAACTAGCTGGC+AGG | - | chr5_3:43560683-43560702 | None:intergenic | 60.0% | |
| CCATTGGGGCTTCCAGTGTC+AGG | - | chr5_3:43561330-43561349 | None:intergenic | 60.0% | |
| CCTGACACTGGAAGCCCCAA+TGG | + | chr5_3:43561327-43561346 | Msa0813070:intron | 60.0% | |
| CACTGTGTGGTTGTCGGAGG+TGG | + | chr5_3:43562605-43562624 | Msa0813070:CDS | 60.0% | |
| GGTTGTCGGAGGTGGTCCTA+CGG | + | chr5_3:43562613-43562632 | Msa0813070:CDS | 60.0% | |
| GTTGTCGGAGGTGGTCCTAC+GGG | + | chr5_3:43562614-43562633 | Msa0813070:CDS | 60.0% | |
| TCCAGTGGCCCCATTCTCCT+GGG | - | chr5_3:43564425-43564444 | None:intergenic | 60.0% | |
| TTCCAGTGGCCCCATTCTCC+TGG | - | chr5_3:43564426-43564445 | None:intergenic | 60.0% | |
| CGAACCGGAGCGGTTGAACC+GGG | - | chr5_3:43559025-43559044 | None:intergenic | 65.0% | |
| GCGAACCGGAGCGGTTGAAC+CGG | - | chr5_3:43559026-43559045 | None:intergenic | 65.0% | |
| AGCCGCATAGCGAACCGGAG+CGG | - | chr5_3:43559035-43559054 | None:intergenic | 65.0% | |
| CCGAGAGCCGCATAGCGAAC+CGG | - | chr5_3:43559040-43559059 | None:intergenic | 65.0% | |
| ! | CCGGTTCGCTATGCGGCTCT+CGG | + | chr5_3:43559037-43559056 | Msa0813070:CDS | 65.0% |
| ACCACACGAGAAGCCACGCG+TGG | + | chr5_3:43559069-43559088 | Msa0813070:CDS | 65.0% | |
| ACCACGCGTGGCTTCTCGTG+TGG | - | chr5_3:43559073-43559092 | None:intergenic | 65.0% | |
| ACACGAGAAGCCACGCGTGG+TGG | + | chr5_3:43559072-43559091 | Msa0813070:CDS | 65.0% | |
| !! | GTTCTCGGCACTGGTTGGGC+CGG | + | chr5_3:43559094-43559113 | Msa0813070:CDS | 65.0% |
| GGCCGCTATAGCGCCGCTAT+TGG | + | chr5_3:43560462-43560481 | Msa0813070:intron | 65.0% | |
| GCTGTCTGCACGGCCTCCAT+TGG | - | chr5_3:43564241-43564260 | None:intergenic | 65.0% | |
| TCCCAGGAGAATGGGGCCAC+TGG | + | chr5_3:43564421-43564440 | Msa0813070:intron | 65.0% | |
| GTGCCGAGAACCACCACGCG+TGG | - | chr5_3:43559085-43559104 | None:intergenic | 70.0% | |
| CGCGTGGTGGTTCTCGGCAC+TGG | + | chr5_3:43559085-43559104 | Msa0813070:CDS | 70.0% | |
| GCTATAGCGGCCGCGCGGTG+CGG | - | chr5_3:43560454-43560473 | None:intergenic | 75.0% | |
| ! | GCGGCGCTATAGCGGCCGCG+CGG | - | chr5_3:43560459-43560478 | None:intergenic | 80.0% |
| ! | CGCTCCGGCACCGCACCGCG+CGG | + | chr5_3:43560441-43560460 | Msa0813070:intron | 85.0% |
| ! | GCGGCCGCGCGGTGCGGTGC+CGG | - | chr5_3:43560448-43560467 | None:intergenic | 90.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 43558731 | 43565211 | 43558731 | ID=Msa0813070;Name=Msa0813070 |
| chr5_3 | mRNA | 43558731 | 43565211 | 43558731 | ID=Msa0813070-mRNA-1;Parent=Msa0813070;Name=Msa0813070-mRNA-1;_AED=0.11;_eAED=0.11;_QI=159|1|1|1|0.77|0.7|10|404|501 |
| chr5_3 | exon | 43558731 | 43559342 | 43558731 | ID=Msa0813070-mRNA-1:exon:13368;Parent=Msa0813070-mRNA-1 |
| chr5_3 | exon | 43562279 | 43562492 | 43562279 | ID=Msa0813070-mRNA-1:exon:13369;Parent=Msa0813070-mRNA-1 |
| chr5_3 | exon | 43562573 | 43562733 | 43562573 | ID=Msa0813070-mRNA-1:exon:13370;Parent=Msa0813070-mRNA-1 |
| chr5_3 | exon | 43562988 | 43563053 | 43562988 | ID=Msa0813070-mRNA-1:exon:13371;Parent=Msa0813070-mRNA-1 |
| chr5_3 | exon | 43563192 | 43563355 | 43563192 | ID=Msa0813070-mRNA-1:exon:13372;Parent=Msa0813070-mRNA-1 |
| chr5_3 | exon | 43563628 | 43563742 | 43563628 | ID=Msa0813070-mRNA-1:exon:13373;Parent=Msa0813070-mRNA-1 |
| chr5_3 | exon | 43564183 | 43564362 | 43564183 | ID=Msa0813070-mRNA-1:exon:13374;Parent=Msa0813070-mRNA-1 |
| chr5_3 | exon | 43564529 | 43564736 | 43564529 | ID=Msa0813070-mRNA-1:exon:13375;Parent=Msa0813070-mRNA-1 |
| chr5_3 | exon | 43564827 | 43564952 | 43564827 | ID=Msa0813070-mRNA-1:exon:13376;Parent=Msa0813070-mRNA-1 |
| chr5_3 | exon | 43564989 | 43565211 | 43564989 | ID=Msa0813070-mRNA-1:exon:13377;Parent=Msa0813070-mRNA-1 |
| chr5_3 | five_prime_UTR | 43558731 | 43558889 | 43558731 | ID=Msa0813070-mRNA-1:five_prime_utr;Parent=Msa0813070-mRNA-1 |
| chr5_3 | CDS | 43558890 | 43559342 | 43558890 | ID=Msa0813070-mRNA-1:cds;Parent=Msa0813070-mRNA-1 |
| chr5_3 | CDS | 43562279 | 43562492 | 43562279 | ID=Msa0813070-mRNA-1:cds;Parent=Msa0813070-mRNA-1 |
| chr5_3 | CDS | 43562573 | 43562733 | 43562573 | ID=Msa0813070-mRNA-1:cds;Parent=Msa0813070-mRNA-1 |
| chr5_3 | CDS | 43562988 | 43563053 | 43562988 | ID=Msa0813070-mRNA-1:cds;Parent=Msa0813070-mRNA-1 |
| chr5_3 | CDS | 43563192 | 43563355 | 43563192 | ID=Msa0813070-mRNA-1:cds;Parent=Msa0813070-mRNA-1 |
| chr5_3 | CDS | 43563628 | 43563742 | 43563628 | ID=Msa0813070-mRNA-1:cds;Parent=Msa0813070-mRNA-1 |
| chr5_3 | CDS | 43564183 | 43564362 | 43564183 | ID=Msa0813070-mRNA-1:cds;Parent=Msa0813070-mRNA-1 |
| chr5_3 | CDS | 43564529 | 43564681 | 43564529 | ID=Msa0813070-mRNA-1:cds;Parent=Msa0813070-mRNA-1 |
| chr5_3 | three_prime_UTR | 43564682 | 43564736 | 43564682 | ID=Msa0813070-mRNA-1:three_prime_utr;Parent=Msa0813070-mRNA-1 |
| chr5_3 | three_prime_UTR | 43564827 | 43564952 | 43564827 | ID=Msa0813070-mRNA-1:three_prime_utr;Parent=Msa0813070-mRNA-1 |
| chr5_3 | three_prime_UTR | 43564989 | 43565211 | 43564989 | ID=Msa0813070-mRNA-1:three_prime_utr;Parent=Msa0813070-mRNA-1 |
| Gene Sequence |
| Protein sequence |
