AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0813270

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0813270 MtrunA17_Chr5g0430631 79.661 59 4 1 103 161 3 53 5.27e-25 95.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 307 sgRNAs with CRISPR-Local

Find 541 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTTCCATCTATCCCGTTTC+TGG 0.021532 5_3:-43870086 Msa0813270:five_prime_UTR
AATGAATTTGCAACCATTTC+TGG 0.040658 5_3:-43870578 Msa0813270:five_prime_UTR
TTTAATTCATTTAAGGTATT+TGG 0.102038 5_3:-43868893 Msa0813270:five_prime_UTR
AACAATTCAAACTTTATATT+TGG 0.111458 5_3:+43867602 None:intergenic
TATTTCATCTATGGGTAATT+TGG 0.163501 5_3:-43869292 Msa0813270:five_prime_UTR
TAATGGATTTATTTCATCTA+TGG 0.175736 5_3:-43869301 Msa0813270:five_prime_UTR
TGAAGCATCCTCTTGCTTTC+AGG 0.176242 5_3:+43865516 None:intergenic
GATATTGGTGTTTCTGCTTC+TGG 0.180085 5_3:-43866436 Msa0813270:CDS
CTCAGCAATATCTTTGAAAA+AGG 0.198789 5_3:+43870364 None:intergenic
TAAAATATATTTGCTGGTTT+TGG 0.199291 5_3:-43869850 Msa0813270:five_prime_UTR
CATTGAATGCCCAACATTAA+AGG 0.201984 5_3:-43867675 Msa0813270:five_prime_UTR
CTCATAAAATGTTCTTGTTT+TGG 0.209343 5_3:-43862913 Msa0813270:three_prime_UTR
CGCCATTCAGCTACTTCATT+TGG 0.218763 5_3:+43870209 None:intergenic
CTTACTAAGCTTACCCTATT+TGG 0.220115 5_3:-43867983 Msa0813270:five_prime_UTR
AGTCCTTACCAGAGCAAAAT+TGG 0.221990 5_3:-43867802 Msa0813270:five_prime_UTR
TCTCTAATTTCACTGTTCTT+AGG 0.243043 5_3:-43862754 Msa0813270:three_prime_UTR
GCAAGGGACTGAATATATTT+TGG 0.244460 5_3:-43863313 Msa0813270:three_prime_UTR
CCTTCGAACTCTAGAGATTT+GGG 0.249558 5_3:-43867765 Msa0813270:five_prime_UTR
ACCCGAAGAGAGCGATTTAA+TGG 0.251257 5_3:+43868949 None:intergenic
CTCTAGATTGGGCAGGATTC+AGG 0.251405 5_3:-43862953 Msa0813270:three_prime_UTR
TTCTGTGATAAATTGTATAA+TGG 0.253654 5_3:+43869935 None:intergenic
CCCTTCGAACTCTAGAGATT+TGG 0.256069 5_3:-43867766 Msa0813270:five_prime_UTR
TTTCAAGTAAGAAATGTTTA+TGG 0.264509 5_3:-43864086 Msa0813270:CDS
CCTCTCATTTCTCTGGACTA+TGG 0.267471 5_3:-43863678 Msa0813270:three_prime_UTR
ATACTTCCTTTCTCATTTGA+TGG 0.270970 5_3:+43863245 None:intergenic
AAGATAAGAAGATTAGAAAT+TGG 0.273229 5_3:+43870686 None:intergenic
AGCTTGTTCACAGCCTTCTT+TGG 0.274062 5_3:+43863274 None:intergenic
GGGGAAAGAATGTATGTATT+TGG 0.281398 5_3:-43869130 Msa0813270:five_prime_UTR
TTTAAATGTAACACAGAAAA+AGG 0.285116 5_3:-43869892 Msa0813270:five_prime_UTR
TCTTCTCGTCCAAACACTTT+TGG 0.289392 5_3:+43870161 None:intergenic
TTGCATTGCTCCTTTATTGT+TGG 0.295683 5_3:+43863901 None:intergenic
AACGATAAATGTTCTAATTC+AGG 0.299435 5_3:-43867372 Msa0813270:intron
TTAGAACATTTATCGTTCTT+AGG 0.303023 5_3:+43867378 None:intergenic
ATATTCCGAACTTACACTTT+TGG 0.303961 5_3:-43866495 Msa0813270:CDS
ATCACGGGTGGACACTAAAA+TGG 0.305595 5_3:+43869728 None:intergenic
TAACAAGATATCTCATATTC+TGG 0.306614 5_3:-43863857 Msa0813270:three_prime_UTR
ATATTCAAAATAGTGAGATT+TGG 0.307298 5_3:-43869473 Msa0813270:five_prime_UTR
TCCATTAAATCGCTCTCTTC+GGG 0.312739 5_3:-43868950 Msa0813270:five_prime_UTR
CATGGCAGCAGTCCAAGTTT+AGG 0.313382 5_3:+43868082 None:intergenic
CAAAATGAACAATTGGAATC+AGG 0.315889 5_3:-43869813 Msa0813270:five_prime_UTR
AAACTAGACCTATTCATATT+AGG 0.318721 5_3:+43862804 None:intergenic
ATTCGACTTTGGATGGCTAA+TGG 0.320554 5_3:-43869318 Msa0813270:five_prime_UTR
TTATTCCTTCACCGCCAAAT+AGG 0.320759 5_3:+43867969 None:intergenic
AAAAGAGAAACATTGCTTTA+GGG 0.324933 5_3:+43869386 None:intergenic
TTCCATTAAATCGCTCTCTT+CGG 0.328215 5_3:-43868951 Msa0813270:five_prime_UTR
GTCTCTCTGATGATGATTGC+TGG 0.330668 5_3:-43869656 Msa0813270:five_prime_UTR
TAGTTATGTTAGTTTCTCTT+TGG 0.332213 5_3:-43866266 Msa0813270:CDS
ATCTATCCCGTTTCTGGGTT+AGG 0.334340 5_3:-43870080 Msa0813270:five_prime_UTR
CACTAAAATGGAACTACCTT+TGG 0.335369 5_3:+43869740 None:intergenic
TGTAAGTAGTAAATTGAGTT+AGG 0.336279 5_3:+43868841 None:intergenic
TATTCAAAATAGTGAGATTT+GGG 0.344462 5_3:-43869472 Msa0813270:five_prime_UTR
TGTCACTTCCTAATATGAAT+AGG 0.346351 5_3:-43862812 Msa0813270:three_prime_UTR
CTGAGAATTTCTCGGTCAAC+AGG 0.348399 5_3:-43869968 Msa0813270:five_prime_UTR
TTCAATAACCCCTCTATGTT+TGG 0.353100 5_3:+43868160 None:intergenic
GCCATTCAGCTACTTCATTT+GGG 0.354201 5_3:+43870210 None:intergenic
AATTTACTACTTACAAAAGT+TGG 0.355734 5_3:-43868833 Msa0813270:five_prime_UTR
CTTTGATTTGATTCCAGAAA+TGG 0.355798 5_3:+43870565 None:intergenic
GCAAGGTAAAATATATTTGC+TGG 0.358580 5_3:-43869856 Msa0813270:five_prime_UTR
ATCGAATGATAACAAATTAT+CGG 0.358721 5_3:+43869053 None:intergenic
AACGGCTTTGATCATATATA+AGG 0.367293 5_3:+43870523 None:intergenic
ATTACTGAACCAAAAGTGTT+TGG 0.370947 5_3:-43870170 Msa0813270:five_prime_UTR
TTTCCATCTATCCCGTTTCT+GGG 0.373506 5_3:-43870085 Msa0813270:five_prime_UTR
CCTCTTGCAGCAAAAGCATT+GGG 0.374273 5_3:-43869537 Msa0813270:five_prime_UTR
AAACTTCAACCTGCTATGTT+TGG 0.374955 5_3:-43864281 Msa0813270:CDS
TGCATCGTTCCTTTAATGTT+GGG 0.377377 5_3:+43867666 None:intergenic
AGAGGGAACAGGGGAGGATT+GGG 0.384073 5_3:-43867642 Msa0813270:five_prime_UTR
ATCAAGTCTGGTAGAGTTAG+AGG 0.384361 5_3:-43870392 Msa0813270:five_prime_UTR
AAAACTGAGATTAGATTGTA+TGG 0.386033 5_3:-43868275 Msa0813270:five_prime_UTR
TATTCATTGTCCAACAATAA+AGG 0.391818 5_3:-43863911 Msa0813270:three_prime_UTR
AGCAAGATGGATGAATATTC+TGG 0.394546 5_3:-43869207 Msa0813270:five_prime_UTR
GAACGATGCAAAGAGGGAAC+AGG 0.395421 5_3:-43867653 Msa0813270:five_prime_UTR
AAGCATCACATTGCTCCCTT+TGG 0.395912 5_3:+43865742 None:intergenic
CTTGCGAACATTGTTTGACT+TGG 0.396506 5_3:-43869004 Msa0813270:five_prime_UTR
TTGCATCGTTCCTTTAATGT+TGG 0.397864 5_3:+43867665 None:intergenic
ATGTTCCACAATATGTCTAT+TGG 0.400469 5_3:+43864401 None:intergenic
TTGTTCAAACAATATGCATT+TGG 0.400696 5_3:-43869630 Msa0813270:five_prime_UTR
TATTCCTTCACCGCCAAATA+GGG 0.401823 5_3:+43867970 None:intergenic
TTACGTGATCTAAACCTTAG+AGG 0.402090 5_3:-43868613 Msa0813270:five_prime_UTR
AAGAAGAATTGATTCGACTT+TGG 0.402365 5_3:-43869329 Msa0813270:five_prime_UTR
TTTCAGCTTCTAATTTCAAC+AGG 0.403891 5_3:-43863809 Msa0813270:three_prime_UTR
GTTTCTGGGTTAGGTGGGCT+TGG 0.403988 5_3:-43870071 Msa0813270:five_prime_UTR
TGAAGGATTGCAATGCTTGC+CGG 0.404188 5_3:-43867738 Msa0813270:five_prime_UTR
AAAGGAAGTATAAATTGATA+TGG 0.404776 5_3:-43863233 Msa0813270:three_prime_UTR
TAACCCAGAAACGGGATAGA+TGG 0.408820 5_3:+43870082 None:intergenic
TAGACATATTGTGGAACATA+TGG 0.409366 5_3:-43864397 Msa0813270:CDS
AAGAGGGAACAGGGGAGGAT+TGG 0.409457 5_3:-43867643 Msa0813270:five_prime_UTR
AGGACAACCTCCTGAGGCTT+AGG 0.410637 5_3:+43863110 None:intergenic
GGATATGCCTCTCATTTCTC+TGG 0.411471 5_3:-43863685 Msa0813270:three_prime_UTR
GTTTCTCTTTGGTCTTTCAT+AGG 0.411687 5_3:-43866255 Msa0813270:intron
TTTAGGATTTCTCTATCCTT+GGG 0.413138 5_3:+43869351 None:intergenic
ATGGCAGCAGTCCAAGTTTA+GGG 0.413257 5_3:+43868083 None:intergenic
CGTGCAGATCTTGTGGCAAT+AGG 0.413928 5_3:-43869591 Msa0813270:five_prime_UTR
TTTCAACATCTGTTGTTAGT+TGG 0.413995 5_3:+43863151 None:intergenic
ACATCGCCAATTCTGACTAT+TGG 0.415083 5_3:+43864028 None:intergenic
CAGTCCAAGTTTAGGGCAAA+AGG 0.415089 5_3:+43868090 None:intergenic
AGGAGGGTACTGGAACTGTT+CGG 0.418186 5_3:-43870238 Msa0813270:five_prime_UTR
GCTCAGCACTAGTAATAGTT+GGG 0.418248 5_3:+43868473 None:intergenic
ATTGTGCTGCTTCCGTTACT+TGG 0.418265 5_3:-43868316 Msa0813270:five_prime_UTR
TTCGCCATGAGATCGGTAAC+AGG 0.420714 5_3:-43870322 Msa0813270:five_prime_UTR
ACAGAGATTGAAGAGAAGTA+AGG 0.421576 5_3:+43867918 None:intergenic
TGCTCAGCACTAGTAATAGT+TGG 0.427504 5_3:+43868472 None:intergenic
TTGTGTTTCTGAGAATTTCT+CGG 0.427827 5_3:-43869976 Msa0813270:five_prime_UTR
GTTAAGCAAGCCAAACGTTT+CGG 0.428049 5_3:+43868769 None:intergenic
GAGCAATGCAAGGAGGAAAC+AGG 0.429038 5_3:-43863889 Msa0813270:three_prime_UTR
TACATTGTTAGTTTAGAGAA+AGG 0.432208 5_3:-43868652 Msa0813270:five_prime_UTR
GGAGGGTACTGGAACTGTTC+GGG 0.433594 5_3:-43870237 Msa0813270:five_prime_UTR
CAGGGTTAACACGAGAGAAA+TGG 0.434488 5_3:-43869794 Msa0813270:five_prime_UTR
TGGGAAACTCACTGTTTGTC+TGG 0.437949 5_3:-43869678 Msa0813270:five_prime_UTR
AGAAATGTTTATGGAAGAGT+TGG 0.443161 5_3:-43864077 Msa0813270:CDS
AATGGATTTATTTCATCTAT+GGG 0.443702 5_3:-43869300 Msa0813270:five_prime_UTR
CTTAAATGAATTAAAATCTC+TGG 0.443797 5_3:+43868901 None:intergenic
CTCATTGCATTTATTCTCAA+AGG 0.446172 5_3:-43870743 Msa0813270:five_prime_UTR
CATCACCAAAAGTGTAAGTT+CGG 0.447077 5_3:+43866490 None:intergenic
GAAACACCAATAGTCAGAAT+TGG 0.447939 5_3:-43864034 Msa0813270:CDS
GTGGAATCAAAATGAACAAT+TGG 0.450549 5_3:-43869820 Msa0813270:five_prime_UTR
AACAGGTTGAAAGAGATTAC+AGG 0.450824 5_3:-43870305 Msa0813270:five_prime_UTR
TGTCCGACACAAACATGGTT+GGG 0.452336 5_3:+43865572 None:intergenic
ATTGATATGGTTGGCATGAA+AGG 0.452934 5_3:-43863220 Msa0813270:three_prime_UTR
GCCTCTTGCAGCAAAAGCAT+TGG 0.453257 5_3:-43869538 Msa0813270:five_prime_UTR
ATCACAGAAAAGAAGTATGA+TGG 0.455801 5_3:-43869921 Msa0813270:five_prime_UTR
TTGTTAGTTGGAAGTAACTT+TGG 0.456624 5_3:+43863163 None:intergenic
TTGACGACTCTGTATATCTC+TGG 0.459720 5_3:-43867839 Msa0813270:intron
AACAGTGAAATTAGAGAGGT+TGG 0.459854 5_3:+43862760 None:intergenic
TCTCTCATGTTTCCTAACAT+TGG 0.460140 5_3:-43868706 Msa0813270:five_prime_UTR
TAGAAATGAGGCCCTGTGTT+CGG 0.460245 5_3:-43865777 Msa0813270:CDS
GAATCAAGAAGCATAGATAT+TGG 0.460998 5_3:-43866451 Msa0813270:CDS
AATGTTGCTGACAAGACATA+AGG 0.461139 5_3:-43863062 Msa0813270:three_prime_UTR
AGCTGAAGCGGCTAATTTGA+AGG 0.462118 5_3:-43868545 Msa0813270:five_prime_UTR
GATGAGTTCTCGATCAAGTC+TGG 0.464752 5_3:-43870404 Msa0813270:five_prime_UTR
CCTGTATGTTTCATACATGA+AGG 0.464929 5_3:+43863335 None:intergenic
TTCATCAATTATGTTTGTCA+TGG 0.465403 5_3:-43868510 Msa0813270:five_prime_UTR
GAAAGAGATTACAGGGAGGT+TGG 0.466350 5_3:-43870297 Msa0813270:five_prime_UTR
TATCGGAGTTAAAACTTATG+TGG 0.467798 5_3:+43869070 None:intergenic
GAGCTCAAGGAATGAAGAAA+AGG 0.468809 5_3:-43869505 Msa0813270:five_prime_UTR
AGCCCACCTAACCCAGAAAC+GGG 0.468955 5_3:+43870074 None:intergenic
AAGATGTTGGAAACATGGTT+TGG 0.474949 5_3:-43869263 Msa0813270:five_prime_UTR
GGTAAATATTGTTAGAAATG+AGG 0.475111 5_3:-43865789 Msa0813270:intron
CTTAGACATATAGTCATTGA+AGG 0.478827 5_3:-43868742 Msa0813270:five_prime_UTR
CTTGGATGATGATGAATCTC+AGG 0.480985 5_3:-43868239 Msa0813270:five_prime_UTR
GTCCTTACCAGAGCAAAATT+GGG 0.483584 5_3:-43867801 Msa0813270:five_prime_UTR
AAATCTCTGGTGATAATACC+TGG 0.484646 5_3:+43868914 None:intergenic
ACGGATTATTGTTACCAAGT+TGG 0.486288 5_3:-43868390 Msa0813270:five_prime_UTR
CTTCTCAGCATCTTCGAGAA+CGG 0.489645 5_3:+43870505 None:intergenic
AAAATATCTTTCATGTACTC+TGG 0.490182 5_3:+43867410 None:intergenic
TATCCCGTTTCTGGGTTAGG+TGG 0.492558 5_3:-43870077 Msa0813270:five_prime_UTR
GAGATAGTAAAGAAATGTAA+TGG 0.493465 5_3:-43869564 Msa0813270:five_prime_UTR
GAGTTGTCTTCCGAAACGTT+TGG 0.493800 5_3:-43868779 Msa0813270:five_prime_UTR
CATAGAGGGGTTATTGAAAG+TGG 0.493866 5_3:-43868155 Msa0813270:five_prime_UTR
TCACTGATTGAGCGAGATCA+TGG 0.494369 5_3:+43869154 None:intergenic
AGAATTGATTCGACTTTGGA+TGG 0.497087 5_3:-43869325 Msa0813270:five_prime_UTR
CGGCATTGTTGCTTACCAAA+GGG 0.498485 5_3:-43865757 Msa0813270:CDS
CTTACCCTATTTGGCGGTGA+AGG 0.502875 5_3:-43867974 Msa0813270:five_prime_UTR
CTTAAAGACCTCTATGTTGA+GGG 0.502894 5_3:-43868049 Msa0813270:five_prime_UTR
CATATAGTCATTGAAGGATG+TGG 0.503492 5_3:-43868736 Msa0813270:five_prime_UTR
TTGAAAATAAATTTCTATGA+CGG 0.504221 5_3:-43868409 Msa0813270:five_prime_UTR
ACATTGTTAGTTTAGAGAAA+GGG 0.504774 5_3:-43868651 Msa0813270:five_prime_UTR
GAGAAACATTGCTTTAGGGT+TGG 0.505053 5_3:+43869390 None:intergenic
AAAATGAACAATTGGAATCA+GGG 0.505170 5_3:-43869812 Msa0813270:five_prime_UTR
AAGCCCACCTAACCCAGAAA+CGG 0.507108 5_3:+43870073 None:intergenic
ATCCCGTTTCTGGGTTAGGT+GGG 0.507837 5_3:-43870076 Msa0813270:five_prime_UTR
TGTTGGAAACATGGTTTGGA+AGG 0.510148 5_3:-43869259 Msa0813270:five_prime_UTR
GAAGTATAAATTGATATGGT+TGG 0.510800 5_3:-43863229 Msa0813270:three_prime_UTR
TATAGCTTCTCCTAAGCCTC+AGG 0.513114 5_3:-43863120 Msa0813270:three_prime_UTR
CCTTCATGTATGAAACATAC+AGG 0.517682 5_3:-43863335 Msa0813270:three_prime_UTR
CTAGAGATTTGGGGTTGTGA+AGG 0.517776 5_3:-43867755 Msa0813270:five_prime_UTR
ATTAGTCCATCAAATGAGAA+AGG 0.518084 5_3:-43863251 Msa0813270:three_prime_UTR
AAGGTCGGAGTCCTTCGCTT+GGG 0.520181 5_3:+43870106 None:intergenic
TGCTGAAGTTCCCCATGAGT+TGG 0.521354 5_3:-43864345 Msa0813270:CDS
CAGTTTATCTGAAGCTGAAG+CGG 0.521431 5_3:-43868557 Msa0813270:five_prime_UTR
GGTTATTGAAAGTGGAAAGA+GGG 0.521462 5_3:-43868147 Msa0813270:five_prime_UTR
AAAATGGCCGACGCTTTGCT+CGG 0.522223 5_3:-43870635 Msa0813270:five_prime_UTR
TGAACCACAGAAACTATAAG+AGG 0.523659 5_3:-43865491 Msa0813270:intron
AAGGGACTATTTCATAATGA+AGG 0.524212 5_3:+43863354 None:intergenic
GTAAAATCAATCTCCAAAGA+AGG 0.524228 5_3:-43863287 Msa0813270:three_prime_UTR
CGTTGAAGATGTTGGAAACA+TGG 0.525564 5_3:-43869268 Msa0813270:five_prime_UTR
AATTTGGACGTTGAAGATGT+TGG 0.526439 5_3:-43869276 Msa0813270:five_prime_UTR
TGGTTCAGTAATAATAGCGC+TGG 0.526927 5_3:+43870181 None:intergenic
ACAATTCCTACCAAACATAG+AGG 0.527695 5_3:-43868170 Msa0813270:five_prime_UTR
GTAGAAGCTCAACCAACTCA+TGG 0.529575 5_3:+43864333 None:intergenic
ATCACCTCTTATAGTTTCTG+TGG 0.529669 5_3:+43865487 None:intergenic
AGGACGGAACAGTGGAGGAC+TGG 0.530239 5_3:-43866531 Msa0813270:CDS
GATCTCGCTCAATCAGTGAC+GGG 0.532784 5_3:-43869150 Msa0813270:five_prime_UTR
CTAAAGTTTCGCCATGAGAT+CGG 0.532989 5_3:-43870329 Msa0813270:five_prime_UTR
GGGTTATTGAAAGTGGAAAG+AGG 0.533192 5_3:-43868148 Msa0813270:five_prime_UTR
AAGTAAAGTTCCTCCAGAGA+TGG 0.533842 5_3:+43868193 None:intergenic
ATGTTGCTGACAAGACATAA+GGG 0.533992 5_3:-43863061 Msa0813270:three_prime_UTR
CTAAGACTAATTATCCAACT+TGG 0.534467 5_3:+43868376 None:intergenic
TAGAAGCTCAACCAACTCAT+GGG 0.534642 5_3:+43864334 None:intergenic
TAGTAGATATTGTAAAATCA+AGG 0.535360 5_3:+43863090 None:intergenic
AAGTAACTCAATCTCAAAGC+GGG 0.536384 5_3:+43869423 None:intergenic
CTCTTGCAGCAAAAGCATTG+GGG 0.537083 5_3:-43869536 Msa0813270:five_prime_UTR
TTTGAACATCCCCTCTGGGA+AGG 0.538226 5_3:+43867943 None:intergenic
TTAGGACAGAAGCTGTAAGT+TGG 0.539005 5_3:-43862736 Msa0813270:three_prime_UTR
AGTAACTTTGGCTCATGTGT+TGG 0.539107 5_3:+43863175 None:intergenic
TCCACACCTCATTTCTCTCG+AGG 0.539396 5_3:-43863941 Msa0813270:intron
AGTAAAGTTCCTCCAGAGAT+GGG 0.539784 5_3:+43868194 None:intergenic
AAAGGTCGGAGTCCTTCGCT+TGG 0.541459 5_3:+43870105 None:intergenic
CAATTCCTACCAAACATAGA+GGG 0.541599 5_3:-43868169 Msa0813270:five_prime_UTR
TGATGAATCTCAGGATGGTA+TGG 0.541660 5_3:-43868230 Msa0813270:five_prime_UTR
ATTAAAGGAACGATGCAAAG+AGG 0.543603 5_3:-43867660 Msa0813270:five_prime_UTR
TCGGCATTGTTGCTTACCAA+AGG 0.544468 5_3:-43865758 Msa0813270:CDS
TATGGATAATCTGAAATACT+TGG 0.545988 5_3:-43868257 Msa0813270:five_prime_UTR
ATCGAAGGCTTAAACAATGT+TGG 0.547081 5_3:-43868580 Msa0813270:five_prime_UTR
ATAACCCCTCTATGTTTGGT+AGG 0.548355 5_3:+43868164 None:intergenic
CTCAGGATGGTATGGAGGTG+AGG 0.548467 5_3:-43868222 Msa0813270:five_prime_UTR
TCAACCTGTTACCGATCTCA+TGG 0.550128 5_3:+43870318 None:intergenic
ACTAAGCTTACCCTATTTGG+CGG 0.550377 5_3:-43867980 Msa0813270:five_prime_UTR
TTTAACAACTATGTAACAAG+TGG 0.550746 5_3:+43865938 None:intergenic
AACAATAAAGGAGCAATGCA+AGG 0.550999 5_3:-43863899 Msa0813270:three_prime_UTR
ATTCTTTCAAGACAGCAAGA+TGG 0.554773 5_3:-43869220 Msa0813270:five_prime_UTR
TTGTCCGACACAAACATGGT+TGG 0.556533 5_3:+43865571 None:intergenic
TATCTCTGGTTGTAATGAGT+TGG 0.556857 5_3:-43867825 Msa0813270:five_prime_UTR
ACATAGAGGTCTTTAAGAGA+TGG 0.557011 5_3:+43868055 None:intergenic
AACATTGTCCGACACAAACA+TGG 0.557828 5_3:+43865567 None:intergenic
TCTTAAAGACCTCTATGTTG+AGG 0.558437 5_3:-43868050 Msa0813270:five_prime_UTR
AAAGAGAAACTAACATAACT+AGG 0.560902 5_3:+43866268 None:intergenic
CTTCGAACTCTAGAGATTTG+GGG 0.563445 5_3:-43867764 Msa0813270:five_prime_UTR
AGAGGAAAATTGAGTATCGA+AGG 0.564426 5_3:-43868595 Msa0813270:five_prime_UTR
TGTGTCCAATAGACATATTG+TGG 0.567616 5_3:-43864406 Msa0813270:CDS
GTTTCTTCTCACCCAAGCGA+AGG 0.568840 5_3:-43870117 Msa0813270:five_prime_UTR
TTTAGTGTCCACCCGTGATG+AGG 0.569884 5_3:-43869724 Msa0813270:five_prime_UTR
TGGATGATATTGCTGAAAGG+AGG 0.571897 5_3:-43870277 Msa0813270:five_prime_UTR
AGAAGAGCGTGCAGATCTTG+TGG 0.573837 5_3:-43869598 Msa0813270:five_prime_UTR
CAGACTGCTCTATTAAGCTA+TGG 0.575461 5_3:-43870472 Msa0813270:five_prime_UTR
AAGGTGCCTACAAGTTTAGT+CGG 0.576541 5_3:+43866401 None:intergenic
TCTTGCAGCAAAAGCATTGG+GGG 0.576771 5_3:-43869535 Msa0813270:five_prime_UTR
TGTATGAAACATACAGGCAA+GGG 0.577616 5_3:-43863329 Msa0813270:three_prime_UTR
GCCCAAATGAAGTAGCTGAA+TGG 0.579751 5_3:-43870211 Msa0813270:five_prime_UTR
CAAGGAATGAAGAAAAGGAA+TGG 0.580458 5_3:-43869500 Msa0813270:five_prime_UTR
AACGATGCAAAGAGGGAACA+GGG 0.580901 5_3:-43867652 Msa0813270:five_prime_UTR
TCAGGATGGTATGGAGGTGA+GGG 0.582271 5_3:-43868221 Msa0813270:five_prime_UTR
CTGTATGTTTCATACATGAA+GGG 0.582286 5_3:+43863336 None:intergenic
CATTTCTGGAATCAAATCAA+AGG 0.582459 5_3:-43870564 Msa0813270:five_prime_UTR
AGGTCAATCTCTACCTTCCG+TGG 0.584817 5_3:-43868007 Msa0813270:five_prime_UTR
AATTTGTTATCATTCGATGA+GGG 0.585831 5_3:-43869048 Msa0813270:five_prime_UTR
CCAAATCTCTAGAGTTCGAA+GGG 0.593102 5_3:+43867766 None:intergenic
CAAGTCAAACAATGTTCGCA+AGG 0.593443 5_3:+43869005 None:intergenic
GAATGAGTGCTGAACTATGC+AGG 0.594519 5_3:+43870717 None:intergenic
TGATCTCGCTCAATCAGTGA+CGG 0.594593 5_3:-43869151 Msa0813270:five_prime_UTR
ACCAAAGACAGAAAATCTGC+AGG 0.595995 5_3:-43865707 Msa0813270:intron
CTTGCAGCAAAAGCATTGGG+GGG 0.597976 5_3:-43869534 Msa0813270:five_prime_UTR
TTAAAGGAACGATGCAAAGA+GGG 0.598894 5_3:-43867659 Msa0813270:five_prime_UTR
CCCAAATCTCTAGAGTTCGA+AGG 0.600327 5_3:+43867765 None:intergenic
TAATTTGTTATCATTCGATG+AGG 0.600794 5_3:-43869049 Msa0813270:five_prime_UTR
GGCAGTTCAAGTTTAATCAG+CGG 0.601683 5_3:-43864056 Msa0813270:CDS
AATTACGCATTATTTGATGT+TGG 0.603094 5_3:-43863834 Msa0813270:three_prime_UTR
TGAGAAGAGCAATGCAAGGA+CGG 0.603934 5_3:-43866547 Msa0813270:CDS
TGAAATTAGAGAGGTTGGCA+TGG 0.604881 5_3:+43862765 None:intergenic
GATGGTAGTTTACCAAGTAA+CGG 0.609201 5_3:+43868304 None:intergenic
ATGTATGAAACATACAGGCA+AGG 0.610622 5_3:-43863330 Msa0813270:three_prime_UTR
ACAGGTTGAAAGAGATTACA+GGG 0.612024 5_3:-43870304 Msa0813270:five_prime_UTR
CTTGCTTTCAGGAAAAGCAG+TGG 0.613067 5_3:+43865527 None:intergenic
AGATCTTGTGGCAATAGGAA+AGG 0.613771 5_3:-43869586 Msa0813270:five_prime_UTR
AACGGGATAGATGGAAAGGT+CGG 0.613884 5_3:+43870091 None:intergenic
GATGTAACAATGAGTTAGTG+AGG 0.614770 5_3:-43868027 Msa0813270:five_prime_UTR
GCTGAAGCGGCTAATTTGAA+GGG 0.616104 5_3:-43868544 Msa0813270:five_prime_UTR
CAGAAACGGGATAGATGGAA+AGG 0.616766 5_3:+43870087 None:intergenic
TGTTTGTGTAAGATATGTTG+TGG 0.618019 5_3:-43865608 Msa0813270:intron
GTTATTGAAAGTGGAAAGAG+GGG 0.618752 5_3:-43868146 Msa0813270:five_prime_UTR
TTGAAATCTGTGTTGTCATG+TGG 0.620321 5_3:-43869765 Msa0813270:five_prime_UTR
TGCAACAACCTCATCACGGG+TGG 0.620356 5_3:+43869716 None:intergenic
AATCTCTGGTGATAATACCT+GGG 0.620737 5_3:+43868915 None:intergenic
TAAGCAACAATGCCGAACAC+AGG 0.621500 5_3:+43865765 None:intergenic
AAGCTTAGTAAGACCACGGA+AGG 0.622732 5_3:+43867994 None:intergenic
GTGAGGTGTCGAATACCCTC+CGG 0.623261 5_3:+43867719 None:intergenic
AAGCAACAATGCCGAACACA+GGG 0.625785 5_3:+43865766 None:intergenic
GGAATAACATCCTTCCCAGA+GGG 0.628233 5_3:-43867953 Msa0813270:five_prime_UTR
AAAGAGAAACTCGCATAACA+AGG 0.628401 5_3:+43863652 None:intergenic
GAGAGCGATTTAATGGAAAG+TGG 0.631347 5_3:+43868956 None:intergenic
GCAATGCAAGGACGGAACAG+TGG 0.633473 5_3:-43866539 Msa0813270:CDS
CACAACTCCGAGCAAAGCGT+CGG 0.633515 5_3:+43870628 None:intergenic
AAATCAAGGACAACCTCCTG+AGG 0.635267 5_3:+43863104 None:intergenic
AATCCCAACCATGTTTGTGT+CGG 0.642986 5_3:-43865575 Msa0813270:CDS
TAAGAACAGTGAAATTAGAG+AGG 0.644031 5_3:+43862756 None:intergenic
ATGCAAAGAGGGAACAGGGG+AGG 0.644478 5_3:-43867648 Msa0813270:five_prime_UTR
TGTTACATCCCTCAACATAG+AGG 0.647756 5_3:+43868041 None:intergenic
AGGAATAACATCCTTCCCAG+AGG 0.649798 5_3:-43867954 Msa0813270:five_prime_UTR
TCTTTAAGAGATGGAAGACA+TGG 0.650461 5_3:+43868064 None:intergenic
AGCTTCTCCTAAGCCTCAGG+AGG 0.651239 5_3:-43863117 Msa0813270:three_prime_UTR
AGGATTGCAATGCTTGCCGG+AGG 0.651754 5_3:-43867735 Msa0813270:five_prime_UTR
GGTTGGATGATATTGCTGAA+AGG 0.654828 5_3:-43870280 Msa0813270:five_prime_UTR
CTCAGCACTAGTAATAGTTG+GGG 0.655004 5_3:+43868474 None:intergenic
ACGATGCAAAGAGGGAACAG+GGG 0.655349 5_3:-43867651 Msa0813270:five_prime_UTR
GGATTGCAATGCTTGCCGGA+GGG 0.656092 5_3:-43867734 Msa0813270:five_prime_UTR
ATGCAAGGACGGAACAGTGG+AGG 0.657307 5_3:-43866536 Msa0813270:CDS
AATTCCTACCAAACATAGAG+GGG 0.657797 5_3:-43868168 Msa0813270:five_prime_UTR
CTCATGGCGAAACTTTAGAG+AGG 0.658974 5_3:+43870334 None:intergenic
AACATGAGAAGAGCAATGCA+AGG 0.659891 5_3:-43866551 Msa0813270:CDS
GTGTTGTCATGTGGATCCAA+AGG 0.666679 5_3:-43869756 Msa0813270:five_prime_UTR
ATCTCGCTCAATCAGTGACG+GGG 0.667933 5_3:-43869149 Msa0813270:five_prime_UTR
ATGCAAGGAGGAAACAGGAG+AGG 0.671217 5_3:-43863884 Msa0813270:three_prime_UTR
CCATAGTCCAGAGAAATGAG+AGG 0.673280 5_3:+43863678 None:intergenic
ACAGAAGCTCAAGAGAAGTG+AGG 0.676440 5_3:+43867702 None:intergenic
AAGCACTTGAGATTTGAGTG+AGG 0.678985 5_3:+43868430 None:intergenic
ATTCTCAACTTAGAAAGACA+AGG 0.685189 5_3:+43868115 None:intergenic
AAGGTGCGGGAATTGTTGCA+AGG 0.686435 5_3:-43869873 Msa0813270:five_prime_UTR
GGGTAAGCTTAGTAAGACCA+CGG 0.687464 5_3:+43867990 None:intergenic
GATGATGATGAATCTCAGGA+TGG 0.696516 5_3:-43868235 Msa0813270:five_prime_UTR
TATGGTTGGCATGAAAGGAG+AGG 0.701666 5_3:-43863215 Msa0813270:three_prime_UTR
GAATAACATCCTTCCCAGAG+GGG 0.705785 5_3:-43867952 Msa0813270:five_prime_UTR
AAAGTAACTCAATCTCAAAG+CGG 0.707672 5_3:+43869422 None:intergenic
AGAAGCTCAACCAACTCATG+GGG 0.708066 5_3:+43864335 None:intergenic
TAGCTTAATAGAGCAGTCTG+TGG 0.712831 5_3:+43870475 None:intergenic
AATAAAGGAGCAATGCAAGG+AGG 0.715195 5_3:-43863896 Msa0813270:three_prime_UTR
TGAATCTCAGGATGGTATGG+AGG 0.716367 5_3:-43868227 Msa0813270:five_prime_UTR
AAAGGAGAGGATGTTGACAA+TGG 0.729404 5_3:-43863202 Msa0813270:three_prime_UTR
GGTTGAAAGAGATTACAGGG+AGG 0.826032 5_3:-43870301 Msa0813270:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTAAAAAAAAATAAAAAAA+TGG - chr5_3:43862910-43862929 Msa0813270:three_prime_UTR 0.0%
!!! TTATTCTCATTTTTATAATT+AGG - chr5_3:43868701-43868720 Msa0813270:five_prime_UTR 10.0%
!!! TTTTTATAATTAGGATATTA+TGG - chr5_3:43868710-43868729 Msa0813270:five_prime_UTR 10.0%
!!! TTATTATCATTTTTATTTAG+AGG - chr5_3:43868733-43868752 Msa0813270:five_prime_UTR 10.0%
!! ATTTAAATTAGAAAGTAATA+TGG + chr5_3:43868927-43868946 None:intergenic 10.0%
!!! CATTTTTAATACTAAAGTTT+GGG - chr5_3:43863561-43863580 Msa0813270:intron 15.0%
!!! TTTAATTCATTTAAGGTATT+TGG - chr5_3:43864668-43864687 Msa0813270:intron 15.0%
!! TTGAAAATAAATTTCTATGA+CGG - chr5_3:43865152-43865171 Msa0813270:intron 15.0%
!! AACAATTCAAACTTTATATT+TGG + chr5_3:43865962-43865981 None:intergenic 15.0%
!! AGAAACTTAAAGAATAAAAA+TGG + chr5_3:43866475-43866494 None:intergenic 15.0%
!!! TTTTGATCATTTTATTTCTT+TGG - chr5_3:43867333-43867352 Msa0813270:intron 15.0%
!! ATTAAACTAAGACAATAATA+TGG + chr5_3:43867588-43867607 None:intergenic 15.0%
!!! AAAATTTGTTGATATGTAAT+GGG - chr5_3:43868413-43868432 Msa0813270:five_prime_UTR 15.0%
!!! AATTTTATTACTATGTATTG+TGG + chr5_3:43868655-43868674 None:intergenic 15.0%
!! TAATTTAAATTTCTATATGC+AGG - chr5_3:43868937-43868956 Msa0813270:five_prime_UTR 15.0%
!! ATTAAACTAAGACAAAAATA+TGG + chr5_3:43870125-43870144 None:intergenic 15.0%
!! AAGATAAGAAGATTAGAAAT+TGG + chr5_3:43862878-43862897 None:intergenic 20.0%
!!! GCATTTTTAATACTAAAGTT+TGG - chr5_3:43863560-43863579 Msa0813270:intron 20.0%
!! TTCTGTGATAAATTGTATAA+TGG + chr5_3:43863629-43863648 None:intergenic 20.0%
!! TTTAAATGTAACACAGAAAA+AGG - chr5_3:43863669-43863688 Msa0813270:three_prime_UTR 20.0%
!!! TAAAATATATTTGCTGGTTT+TGG - chr5_3:43863711-43863730 Msa0813270:intron 20.0%
!! ATATTCAAAATAGTGAGATT+TGG - chr5_3:43864088-43864107 Msa0813270:CDS 20.0%
!! TATTCAAAATAGTGAGATTT+GGG - chr5_3:43864089-43864108 Msa0813270:CDS 20.0%
!!! TAATGGATTTATTTCATCTA+TGG - chr5_3:43864260-43864279 Msa0813270:CDS 20.0%
!!! AATGGATTTATTTCATCTAT+GGG - chr5_3:43864261-43864280 Msa0813270:CDS 20.0%
!! ATCGAATGATAACAAATTAT+CGG + chr5_3:43864511-43864530 None:intergenic 20.0%
!! CTTAAATGAATTAAAATCTC+TGG + chr5_3:43864663-43864682 None:intergenic 20.0%
!!! CAGAGATTTTAATTCATTTA+AGG - chr5_3:43864661-43864680 Msa0813270:intron 20.0%
!! AATTTACTACTTACAAAAGT+TGG - chr5_3:43864728-43864747 Msa0813270:intron 20.0%
!!! TTTTAATTTTGCTGATTTTG+TGG - chr5_3:43866271-43866290 Msa0813270:CDS 20.0%
!!! TACGTTAATTTGAATATTGT+TGG - chr5_3:43866677-43866696 Msa0813270:intron 20.0%
!!! ACGTTAATTTGAATATTGTT+GGG - chr5_3:43866678-43866697 Msa0813270:intron 20.0%
!!! ATGTTTTCAATGTTTTTCAA+AGG - chr5_3:43866969-43866988 Msa0813270:intron 20.0%
!! TCAATACCACAAATAAAAAA+GGG + chr5_3:43867440-43867459 None:intergenic 20.0%
!! TTCAATACCACAAATAAAAA+AGG + chr5_3:43867441-43867460 None:intergenic 20.0%
!! CATTATGAATTTATCATCAA+AGG - chr5_3:43867482-43867501 Msa0813270:intron 20.0%
!!! CACTTTGTTATCAAATTAAA+TGG + chr5_3:43868129-43868148 None:intergenic 20.0%
!!! CATTACATATCAACAAATTT+TGG + chr5_3:43868414-43868433 None:intergenic 20.0%
!!! CAAAATTTGTTGATATGTAA+TGG - chr5_3:43868412-43868431 Msa0813270:five_prime_UTR 20.0%
!! GTAAAATTATTGTGAGAATT+GGG - chr5_3:43869000-43869019 Msa0813270:five_prime_UTR 20.0%
!! ATATATTCATGAAAATATGC+AGG - chr5_3:43869444-43869463 Msa0813270:five_prime_UTR 20.0%
!!! TTTCAAGTAAGAAATGTTTA+TGG - chr5_3:43869475-43869494 Msa0813270:five_prime_UTR 20.0%
!!! TTAGTTTAATTTATATGTGC+AGG - chr5_3:43870135-43870154 Msa0813270:five_prime_UTR 20.0%
!!! AAAGGAAGTATAAATTGATA+TGG - chr5_3:43870328-43870347 Msa0813270:five_prime_UTR 20.0%
!! TAGTAGATATTGTAAAATCA+AGG + chr5_3:43870474-43870493 None:intergenic 20.0%
! AAAAACAACTCTTCTTCAAT+CGG - chr5_3:43863513-43863532 Msa0813270:intron 25.0%
! AAAATGAACAATTGGAATCA+GGG - chr5_3:43863749-43863768 Msa0813270:intron 25.0%
! TTGTTCAAACAATATGCATT+TGG - chr5_3:43863931-43863950 Msa0813270:three_prime_UTR 25.0%
! GAGATAGTAAAGAAATGTAA+TGG - chr5_3:43863997-43864016 Msa0813270:three_prime_UTR 25.0%
! AAAAGAGAAACATTGCTTTA+GGG + chr5_3:43864178-43864197 None:intergenic 25.0%
! AAAAAGAGAAACATTGCTTT+AGG + chr5_3:43864179-43864198 None:intergenic 25.0%
! TATTTCATCTATGGGTAATT+TGG - chr5_3:43864269-43864288 Msa0813270:CDS 25.0%
!! TGTCTTGAAAGAATGATTTT+TGG + chr5_3:43864335-43864354 None:intergenic 25.0%
!!! TAATTTGTTATCATTCGATG+AGG - chr5_3:43864512-43864531 Msa0813270:intron 25.0%
!!! AATTTGTTATCATTCGATGA+GGG - chr5_3:43864513-43864532 Msa0813270:intron 25.0%
!!! CAAGGATTCAACTTTTTTAA+AGG + chr5_3:43864541-43864560 None:intergenic 25.0%
! TGTAAGTAGTAAATTGAGTT+AGG + chr5_3:43864723-43864742 None:intergenic 25.0%
!! CAAGTTAATTTTCCAATGTT+AGG + chr5_3:43864870-43864889 None:intergenic 25.0%
!! TACATTGTTAGTTTAGAGAA+AGG - chr5_3:43864909-43864928 Msa0813270:intron 25.0%
!! ACATTGTTAGTTTAGAGAAA+GGG - chr5_3:43864910-43864929 Msa0813270:intron 25.0%
! TTCATCAATTATGTTTGTCA+TGG - chr5_3:43865051-43865070 Msa0813270:intron 25.0%
!!! AATCTCAGTTTTTTTAGAGA+TGG + chr5_3:43865278-43865297 None:intergenic 25.0%
! AAAACTGAGATTAGATTGTA+TGG - chr5_3:43865286-43865305 Msa0813270:intron 25.0%
!! TATGGATAATCTGAAATACT+TGG - chr5_3:43865304-43865323 Msa0813270:intron 25.0%
! CTATAATTTCACAAAACTGA+AGG - chr5_3:43865670-43865689 Msa0813270:intron 25.0%
! AGTAAAATTGATATTTGCGA+TGG + chr5_3:43866024-43866043 None:intergenic 25.0%
!! ATCGCAAATATCAATTTTAC+TGG - chr5_3:43866023-43866042 Msa0813270:intron 25.0%
! TTGAAATCCAAACATAAGAA+GGG + chr5_3:43866064-43866083 None:intergenic 25.0%
! AAAATATCTTTCATGTACTC+TGG + chr5_3:43866154-43866173 None:intergenic 25.0%
! TTAGAACATTTATCGTTCTT+AGG + chr5_3:43866186-43866205 None:intergenic 25.0%
! AACGATAAATGTTCTAATTC+AGG - chr5_3:43866189-43866208 Msa0813270:intron 25.0%
!!! TTTGTGGAAATTGATTTGAA+TGG - chr5_3:43866287-43866306 Msa0813270:CDS 25.0%
! TTGAATGTAACTATATGAGT+TGG - chr5_3:43866598-43866617 Msa0813270:intron 25.0%
! CGATTTAGTTAAAATTCAGA+TGG - chr5_3:43866787-43866806 Msa0813270:intron 25.0%
!!! AGATGGTTTGTTCTAAAATT+TGG - chr5_3:43866804-43866823 Msa0813270:intron 25.0%
!!! GTTTGTTCTAAAATTTGGTT+TGG - chr5_3:43866809-43866828 Msa0813270:intron 25.0%
!! ATCATTGATCTTGTTTCAAT+AGG + chr5_3:43866874-43866893 None:intergenic 25.0%
!! TAGAATTCAATGTTTTCCAA+AGG - chr5_3:43866900-43866919 Msa0813270:intron 25.0%
! TGAAAACATTGAATTCTATC+AGG + chr5_3:43866958-43866977 None:intergenic 25.0%
! AAAGAGAAACTAACATAACT+AGG + chr5_3:43867296-43867315 None:intergenic 25.0%
!! TAGTTATGTTAGTTTCTCTT+TGG - chr5_3:43867295-43867314 Msa0813270:intron 25.0%
!!! CATTTTATTTCTTTGGTCTT+TGG - chr5_3:43867340-43867359 Msa0813270:intron 25.0%
! ACAGTCAAAAGAAATAAAGA+TGG + chr5_3:43867384-43867403 None:intergenic 25.0%
!!! GAATATCCCTTTTTTATTTG+TGG - chr5_3:43867431-43867450 Msa0813270:intron 25.0%
! TTTAACAACTATGTAACAAG+TGG + chr5_3:43867626-43867645 None:intergenic 25.0%
! GGTAAATATTGTTAGAAATG+AGG - chr5_3:43867772-43867791 Msa0813270:five_prime_UTR 25.0%
!! CTTGAGTTTTTGAATATTTG+TGG - chr5_3:43868324-43868343 Msa0813270:five_prime_UTR 25.0%
! CAATACAAGAATGATATTAG+AGG - chr5_3:43868628-43868647 Msa0813270:five_prime_UTR 25.0%
! GGTAAAATTATTGTGAGAAT+TGG - chr5_3:43868999-43869018 Msa0813270:five_prime_UTR 25.0%
! ATGCAACAAATCAAAATTCT+TGG - chr5_3:43869055-43869074 Msa0813270:five_prime_UTR 25.0%
!!! AAGCTGAATATTTTGAGATA+TGG + chr5_3:43869323-43869342 None:intergenic 25.0%
! ATATTATAGGAACTGAAGAA+TGG + chr5_3:43869390-43869409 None:intergenic 25.0%
!! GATGTTGTTAAGCATATTTT+AGG - chr5_3:43869551-43869570 Msa0813270:five_prime_UTR 25.0%
! TATTCATTGTCCAACAATAA+AGG - chr5_3:43869650-43869669 Msa0813270:five_prime_UTR 25.0%
! TAACAAGATATCTCATATTC+TGG - chr5_3:43869704-43869723 Msa0813270:five_prime_UTR 25.0%
! AATTACGCATTATTTGATGT+TGG - chr5_3:43869727-43869746 Msa0813270:five_prime_UTR 25.0%
! ACAGTCAAAAGAAATAAAGA+TGG + chr5_3:43867384-43867403 None:intergenic 25.0%
!! AACATGCAATTATAGTTTTC+AGG + chr5_3:43869995-43870014 None:intergenic 25.0%
!!! GTTAAAACATCTTTTAAGTG+AGG - chr5_3:43870177-43870196 Msa0813270:five_prime_UTR 25.0%
! GAAGTATAAATTGATATGGT+TGG - chr5_3:43870332-43870351 Msa0813270:five_prime_UTR 25.0%
! AACAAAAAAACTACACTAGA+GGG + chr5_3:43870552-43870571 None:intergenic 25.0%
!!! CTCATAAAATGTTCTTGTTT+TGG - chr5_3:43870648-43870667 Msa0813270:five_prime_UTR 25.0%
! AAACTAGACCTATTCATATT+AGG + chr5_3:43870760-43870779 None:intergenic 25.0%
CTCATTGCATTTATTCTCAA+AGG - chr5_3:43862818-43862837 Msa0813270:three_prime_UTR 30.0%
AATGAATTTGCAACCATTTC+TGG - chr5_3:43862983-43863002 Msa0813270:three_prime_UTR 30.0%
!! CTTTGATTTGATTCCAGAAA+TGG + chr5_3:43862999-43863018 None:intergenic 30.0%
!! CATTTCTGGAATCAAATCAA+AGG - chr5_3:43862997-43863016 Msa0813270:three_prime_UTR 30.0%
! AACGGCTTTGATCATATATA+AGG + chr5_3:43863041-43863060 None:intergenic 30.0%
! CTCAGCAATATCTTTGAAAA+AGG + chr5_3:43863200-43863219 None:intergenic 30.0%
!!! AAGAAGTTTTTTCTACAGGA+GGG - chr5_3:43863307-43863326 Msa0813270:three_prime_UTR 30.0%
!! ATTACTGAACCAAAAGTGTT+TGG - chr5_3:43863391-43863410 Msa0813270:three_prime_UTR 30.0%
! TTGTGTTTCTGAGAATTTCT+CGG - chr5_3:43863585-43863604 Msa0813270:intron 30.0%
! ATCACAGAAAAGAAGTATGA+TGG - chr5_3:43863640-43863659 Msa0813270:three_prime_UTR 30.0%
GCAAGGTAAAATATATTTGC+TGG - chr5_3:43863705-43863724 Msa0813270:intron 30.0%
GTGGAATCAAAATGAACAAT+TGG - chr5_3:43863741-43863760 Msa0813270:intron 30.0%
CAAAATGAACAATTGGAATC+AGG - chr5_3:43863748-43863767 Msa0813270:intron 30.0%
AAAGTAACTCAATCTCAAAG+CGG + chr5_3:43864142-43864161 None:intergenic 30.0%
! TTTTTGTGCTATATTTCCCA+AGG - chr5_3:43864194-43864213 Msa0813270:intron 30.0%
! TTTAGGATTTCTCTATCCTT+GGG + chr5_3:43864213-43864232 None:intergenic 30.0%
!!! TTTTAGGATTTCTCTATCCT+TGG + chr5_3:43864214-43864233 None:intergenic 30.0%
! GTCGAATCAATTCTTCTTTT+AGG + chr5_3:43864230-43864249 None:intergenic 30.0%
!! AAGAAGAATTGATTCGACTT+TGG - chr5_3:43864232-43864251 Msa0813270:CDS 30.0%
TATCGGAGTTAAAACTTATG+TGG + chr5_3:43864494-43864513 None:intergenic 30.0%
!!! GAAAGTGGTCATGTTTTTTT+GGG + chr5_3:43864593-43864612 None:intergenic 30.0%
CTTAGACATATAGTCATTGA+AGG - chr5_3:43864819-43864838 Msa0813270:intron 30.0%
CTAAGACTAATTATCCAACT+TGG + chr5_3:43865188-43865207 None:intergenic 30.0%
ATTCTCAACTTAGAAAGACA+AGG + chr5_3:43865449-43865468 None:intergenic 30.0%
TGAAATCCAAACATAAGAAG+GGG + chr5_3:43866063-43866082 None:intergenic 30.0%
GTTGAAATCCAAACATAAGA+AGG + chr5_3:43866065-43866084 None:intergenic 30.0%
!! GGAAATTGATTTGAATGGTT+AGG - chr5_3:43866292-43866311 Msa0813270:CDS 30.0%
GGAAAACATTGAATTCTATC+AGG + chr5_3:43866898-43866917 None:intergenic 30.0%
! CCATTGCTTCTATTCTAAAA+GGG + chr5_3:43866933-43866952 None:intergenic 30.0%
ACCATTGCTTCTATTCTAAA+AGG + chr5_3:43866934-43866953 None:intergenic 30.0%
! ATATTCCGAACTTACACTTT+TGG - chr5_3:43867066-43867085 Msa0813270:intron 30.0%
! GTGATGCTTTTATGTTCTAT+AGG - chr5_3:43867088-43867107 Msa0813270:intron 30.0%
! GAATCAAGAAGCATAGATAT+TGG - chr5_3:43867110-43867129 Msa0813270:intron 30.0%
AAACACAAACGAAAGAAAGA+TGG + chr5_3:43867195-43867214 None:intergenic 30.0%
GTCAAAAGAAATAAAGATGG+AGG + chr5_3:43867381-43867400 None:intergenic 30.0%
! TTAGTTTAATTTCTCTGTGC+AGG - chr5_3:43867598-43867617 Msa0813270:five_prime_UTR 30.0%
!! TTAAAACGTCTTTTGAGTGA+GGG - chr5_3:43867641-43867660 Msa0813270:five_prime_UTR 30.0%
TATTACACACATGTTGATCT+TGG + chr5_3:43867670-43867689 None:intergenic 30.0%
! ATGTCGATGATAATTTTACC+CGG + chr5_3:43867695-43867714 None:intergenic 30.0%
ACGAGAATCATAATATGCAT+TGG + chr5_3:43867747-43867766 None:intergenic 30.0%
ATATTATGATTCTCGTGTGT+TGG - chr5_3:43867751-43867770 Msa0813270:five_prime_UTR 30.0%
TGTGTATACAGCTCTTTATT+AGG - chr5_3:43867877-43867896 Msa0813270:intron 30.0%
TATACAGCTCTTTATTAGGA+AGG - chr5_3:43867881-43867900 Msa0813270:intron 30.0%
TGTTTGTGTAAGATATGTTG+TGG - chr5_3:43867953-43867972 Msa0813270:five_prime_UTR 30.0%
! ACTATAAGAGGTGATGATTT+TGG - chr5_3:43868082-43868101 Msa0813270:five_prime_UTR 30.0%
! ACTTATTTCTCTTCGAACTA+TGG - chr5_3:43868242-43868261 Msa0813270:five_prime_UTR 30.0%
TATGGATATTGTTGAATCTG+AGG - chr5_3:43868260-43868279 Msa0813270:five_prime_UTR 30.0%
!! CTAGAATTTTGACAGTTAGA+TGG - chr5_3:43868455-43868474 Msa0813270:five_prime_UTR 30.0%
! GGTTTTCAATATTTTGTGCA+AGG - chr5_3:43868476-43868495 Msa0813270:five_prime_UTR 30.0%
! TTTCAATATTTTGTGCAAGG+TGG - chr5_3:43868479-43868498 Msa0813270:five_prime_UTR 30.0%
! TTCAATATTTTGTGCAAGGT+GGG - chr5_3:43868480-43868499 Msa0813270:five_prime_UTR 30.0%
TTCGAAGATACAATTCATAG+AGG + chr5_3:43868805-43868824 None:intergenic 30.0%
ATGTTCCACAATATGTCTAT+TGG + chr5_3:43869163-43869182 None:intergenic 30.0%
TAGACATATTGTGGAACATA+TGG - chr5_3:43869164-43869183 Msa0813270:five_prime_UTR 30.0%
! TCAAAATATTCAGCTTTTCG+TGG - chr5_3:43869327-43869346 Msa0813270:five_prime_UTR 30.0%
AGAAATGTTTATGGAAGAGT+TGG - chr5_3:43869484-43869503 Msa0813270:five_prime_UTR 30.0%
TTTCAGCTTCTAATTTCAAC+AGG - chr5_3:43869752-43869771 Msa0813270:five_prime_UTR 30.0%
GTCAAAAGAAATAAAGATGG+AGG + chr5_3:43867381-43867400 None:intergenic 30.0%
TACAGTGTATAACAATCTCT+TGG - chr5_3:43869837-43869856 Msa0813270:five_prime_UTR 30.0%
! GTTTCTCTTTTGTCTTGAAT+AGG - chr5_3:43869922-43869941 Msa0813270:five_prime_UTR 30.0%
TTGTCTTGAATAGGTAAGTT+TGG - chr5_3:43869931-43869950 Msa0813270:five_prime_UTR 30.0%
!! ACATCTTTTAAGTGAGGTTA+TGG - chr5_3:43870183-43870202 Msa0813270:five_prime_UTR 30.0%
AAGGGACTATTTCATAATGA+AGG + chr5_3:43870210-43870229 None:intergenic 30.0%
CTGTATGTTTCATACATGAA+GGG + chr5_3:43870228-43870247 None:intergenic 30.0%
!! TCTTTGGAGATTGATTTTAC+AGG + chr5_3:43870274-43870293 None:intergenic 30.0%
GTAAAATCAATCTCCAAAGA+AGG - chr5_3:43870274-43870293 Msa0813270:five_prime_UTR 30.0%
ATTAGTCCATCAAATGAGAA+AGG - chr5_3:43870310-43870329 Msa0813270:five_prime_UTR 30.0%
ATACTTCCTTTCTCATTTGA+TGG + chr5_3:43870319-43870338 None:intergenic 30.0%
TTGTTAGTTGGAAGTAACTT+TGG + chr5_3:43870401-43870420 None:intergenic 30.0%
TTTCAACATCTGTTGTTAGT+TGG + chr5_3:43870413-43870432 None:intergenic 30.0%
CAACAAAAAAACTACACTAG+AGG + chr5_3:43870553-43870572 None:intergenic 30.0%
!!! CTCTAGTGTAGTTTTTTTGT+TGG - chr5_3:43870551-43870570 Msa0813270:five_prime_UTR 30.0%
! TGTCACTTCCTAATATGAAT+AGG - chr5_3:43870749-43870768 Msa0813270:five_prime_UTR 30.0%
TAAGAACAGTGAAATTAGAG+AGG + chr5_3:43870808-43870827 None:intergenic 30.0%
TCTCTAATTTCACTGTTCTT+AGG - chr5_3:43870807-43870826 Msa0813270:five_prime_UTR 30.0%
! TGGTTGCAAATTCATTTTGC+AGG + chr5_3:43862979-43862998 None:intergenic 35.0%
! AACAGGTTGAAAGAGATTAC+AGG - chr5_3:43863256-43863275 Msa0813270:three_prime_UTR 35.0%
! ACAGGTTGAAAGAGATTACA+GGG - chr5_3:43863257-43863276 Msa0813270:three_prime_UTR 35.0%
!!! GAGGAAGAAGTTTTTTCTAC+AGG - chr5_3:43863303-43863322 Msa0813270:three_prime_UTR 35.0%
!!! GAAGAAGTTTTTTCTACAGG+AGG - chr5_3:43863306-43863325 Msa0813270:three_prime_UTR 35.0%
ATGTAACACAGAAAAAGGTG+CGG - chr5_3:43863674-43863693 Msa0813270:three_prime_UTR 35.0%
TTGAAATCTGTGTTGTCATG+TGG - chr5_3:43863796-43863815 Msa0813270:three_prime_UTR 35.0%
CACTAAAATGGAACTACCTT+TGG + chr5_3:43863824-43863843 None:intergenic 35.0%
! TTTTTGCAACAACCTCATCA+CGG + chr5_3:43863852-43863871 None:intergenic 35.0%
TTGCAAAAATCACAGGAACA+TGG - chr5_3:43863863-43863882 Msa0813270:three_prime_UTR 35.0%
TGCAAAAATCACAGGAACAT+GGG - chr5_3:43863864-43863883 Msa0813270:three_prime_UTR 35.0%
CAAGGAATGAAGAAAAGGAA+TGG - chr5_3:43864061-43864080 Msa0813270:CDS 35.0%
! GGCAAAACAGAATTTTCTTG+TGG + chr5_3:43864120-43864139 None:intergenic 35.0%
AAGTAACTCAATCTCAAAGC+GGG + chr5_3:43864141-43864160 None:intergenic 35.0%
!! AGAATTGATTCGACTTTGGA+TGG - chr5_3:43864236-43864255 Msa0813270:CDS 35.0%
AATTTGGACGTTGAAGATGT+TGG - chr5_3:43864285-43864304 Msa0813270:CDS 35.0%
AAGATGTTGGAAACATGGTT+TGG - chr5_3:43864298-43864317 Msa0813270:CDS 35.0%
ATTCTTTCAAGACAGCAAGA+TGG - chr5_3:43864341-43864360 Msa0813270:CDS 35.0%
AGCAAGATGGATGAATATTC+TGG - chr5_3:43864354-43864373 Msa0813270:CDS 35.0%
GGGGAAAGAATGTATGTATT+TGG - chr5_3:43864431-43864450 Msa0813270:CDS 35.0%
!!! GGAAAGTGGTCATGTTTTTT+TGG + chr5_3:43864594-43864613 None:intergenic 35.0%
TTCCATTAAATCGCTCTCTT+CGG - chr5_3:43864610-43864629 Msa0813270:intron 35.0%
AATCTCTGGTGATAATACCT+GGG + chr5_3:43864649-43864668 None:intergenic 35.0%
AAATCTCTGGTGATAATACC+TGG + chr5_3:43864650-43864669 None:intergenic 35.0%
CATATAGTCATTGAAGGATG+TGG - chr5_3:43864825-43864844 Msa0813270:intron 35.0%
TCTCTCATGTTTCCTAACAT+TGG - chr5_3:43864855-43864874 Msa0813270:intron 35.0%
TTACGTGATCTAAACCTTAG+AGG - chr5_3:43864948-43864967 Msa0813270:intron 35.0%
! CGATACTCAATTTTCCTCTA+AGG + chr5_3:43864965-43864984 None:intergenic 35.0%
!! AGAGGAAAATTGAGTATCGA+AGG - chr5_3:43864966-43864985 Msa0813270:intron 35.0%
ATCGAAGGCTTAAACAATGT+TGG - chr5_3:43864981-43865000 Msa0813270:intron 35.0%
! ACGGATTATTGTTACCAAGT+TGG - chr5_3:43865171-43865190 Msa0813270:intron 35.0%
GATGGTAGTTTACCAAGTAA+CGG + chr5_3:43865260-43865279 None:intergenic 35.0%
ACAATTCCTACCAAACATAG+AGG - chr5_3:43865391-43865410 Msa0813270:intron 35.0%
CAATTCCTACCAAACATAGA+GGG - chr5_3:43865392-43865411 Msa0813270:intron 35.0%
AATTCCTACCAAACATAGAG+GGG - chr5_3:43865393-43865412 Msa0813270:intron 35.0%
TTCAATAACCCCTCTATGTT+TGG + chr5_3:43865404-43865423 None:intergenic 35.0%
GGTTATTGAAAGTGGAAAGA+GGG - chr5_3:43865414-43865433 Msa0813270:intron 35.0%
GTTATTGAAAGTGGAAAGAG+GGG - chr5_3:43865415-43865434 Msa0813270:intron 35.0%
! TCTTTAAGAGATGGAAGACA+TGG + chr5_3:43865500-43865519 None:intergenic 35.0%
! ACATAGAGGTCTTTAAGAGA+TGG + chr5_3:43865509-43865528 None:intergenic 35.0%
TCTTAAAGACCTCTATGTTG+AGG - chr5_3:43865511-43865530 Msa0813270:CDS 35.0%
CTTAAAGACCTCTATGTTGA+GGG - chr5_3:43865512-43865531 Msa0813270:CDS 35.0%
GATGTAACAATGAGTTAGTG+AGG - chr5_3:43865534-43865553 Msa0813270:CDS 35.0%
CTTACTAAGCTTACCCTATT+TGG - chr5_3:43865578-43865597 Msa0813270:CDS 35.0%
ACAGAGATTGAAGAGAAGTA+AGG + chr5_3:43865646-43865665 None:intergenic 35.0%
TATCTCTGGTTGTAATGAGT+TGG - chr5_3:43865736-43865755 Msa0813270:CDS 35.0%
CATTGAATGCCCAACATTAA+AGG - chr5_3:43865886-43865905 Msa0813270:intron 35.0%
TGCATCGTTCCTTTAATGTT+GGG + chr5_3:43865898-43865917 None:intergenic 35.0%
TTGCATCGTTCCTTTAATGT+TGG + chr5_3:43865899-43865918 None:intergenic 35.0%
ATTAAAGGAACGATGCAAAG+AGG - chr5_3:43865901-43865920 Msa0813270:intron 35.0%
TTAAAGGAACGATGCAAAGA+GGG - chr5_3:43865902-43865921 Msa0813270:intron 35.0%
CTATTTCCCCTTCTTATGTT+TGG - chr5_3:43866054-43866073 Msa0813270:intron 35.0%
!! ATTCTCGTTGTTGACTTCTT+TGG - chr5_3:43866106-43866125 Msa0813270:intron 35.0%
!! AGGATTGCGATTTTGACAAT+CGG - chr5_3:43866408-43866427 Msa0813270:intron 35.0%
!! TGATGATCAGACTTGCTAAT+GGG + chr5_3:43866443-43866462 None:intergenic 35.0%
!! TTGATGATCAGACTTGCTAA+TGG + chr5_3:43866444-43866463 None:intergenic 35.0%
ATTAGCAAGTCTGATCATCA+AGG - chr5_3:43866443-43866462 Msa0813270:CDS 35.0%
CTAAAAGGGACATAAACCTT+TGG + chr5_3:43866919-43866938 None:intergenic 35.0%
!!! CCCTTTTAGAATAGAAGCAA+TGG - chr5_3:43866930-43866949 Msa0813270:intron 35.0%
!!! TGCTCTTCTCATGTTTTAGT+TGG + chr5_3:43867005-43867024 None:intergenic 35.0%
! CATCACCAAAAGTGTAAGTT+CGG + chr5_3:43867074-43867093 None:intergenic 35.0%
ACATTTCCGACTAAACTTGT+AGG - chr5_3:43867154-43867173 Msa0813270:intron 35.0%
ACAAACGAAAGAAAGATGGA+GGG + chr5_3:43867191-43867210 None:intergenic 35.0%
AGTGTCAAATCCTGCAAAAA+CGG + chr5_3:43867252-43867271 None:intergenic 35.0%
!!! ACACTCCTGTTTTTTCACTA+TGG - chr5_3:43867267-43867286 Msa0813270:intron 35.0%
! GTTTCTCTTTGGTCTTTCAT+AGG - chr5_3:43867306-43867325 Msa0813270:intron 35.0%
! TTTCTTTGGTCTTTGGTCTT+TGG - chr5_3:43867347-43867366 Msa0813270:intron 35.0%
!! GTTAAAACGTCTTTTGAGTG+AGG - chr5_3:43867640-43867659 Msa0813270:five_prime_UTR 35.0%
TCAACATGTGTGTAATACTC+CGG - chr5_3:43867673-43867692 Msa0813270:five_prime_UTR 35.0%
TGAACCACAGAAACTATAAG+AGG - chr5_3:43868070-43868089 Msa0813270:five_prime_UTR 35.0%
ATCACCTCTTATAGTTTCTG+TGG + chr5_3:43868077-43868096 None:intergenic 35.0%
GTTTCAAATACCTTATGGCA+GGG + chr5_3:43868295-43868314 None:intergenic 35.0%
GTGAGGTTTCAAATACCTTA+TGG + chr5_3:43868300-43868319 None:intergenic 35.0%
TCAAAAACTCAAGTGAAGTG+AGG + chr5_3:43868317-43868336 None:intergenic 35.0%
CCTTACACTCCTTTGAATTT+GGG + chr5_3:43868353-43868372 None:intergenic 35.0%
TCCTTACACTCCTTTGAATT+TGG + chr5_3:43868354-43868373 None:intergenic 35.0%
! AAGGAGTGTAAGGAAATAAC+AGG - chr5_3:43868360-43868379 Msa0813270:five_prime_UTR 35.0%
AGGAAATAACAGGAGAAGAA+TGG - chr5_3:43868370-43868389 Msa0813270:five_prime_UTR 35.0%
GGAAATAACAGGAGAAGAAT+GGG - chr5_3:43868371-43868390 Msa0813270:five_prime_UTR 35.0%
GTAATCTCAAGACAGTTATC+TGG - chr5_3:43868855-43868874 Msa0813270:five_prime_UTR 35.0%
TATGGTGATAAGAAGATGCA+GGG + chr5_3:43868909-43868928 None:intergenic 35.0%
ATATGGTGATAAGAAGATGC+AGG + chr5_3:43868910-43868929 None:intergenic 35.0%
! TTGCTTTCTCAGTTTTTGTG+TGG - chr5_3:43868966-43868985 Msa0813270:five_prime_UTR 35.0%
! GTTTTTGTGTGGAATGTCTA+CGG - chr5_3:43868977-43868996 Msa0813270:five_prime_UTR 35.0%
! TTTTTGTGTGGAATGTCTAC+GGG - chr5_3:43868978-43868997 Msa0813270:five_prime_UTR 35.0%
! CAGCGTCAATTCTAAAGATA+TGG + chr5_3:43869026-43869045 None:intergenic 35.0%
TGTGTATACAGCTCTTCATT+AGG - chr5_3:43869096-43869115 Msa0813270:five_prime_UTR 35.0%
TATACAGCTCTTCATTAGGA+AGG - chr5_3:43869100-43869119 Msa0813270:five_prime_UTR 35.0%
TGTGTCCAATAGACATATTG+TGG - chr5_3:43869155-43869174 Msa0813270:five_prime_UTR 35.0%
AAACTTCAACCTGCTATGTT+TGG - chr5_3:43869280-43869299 Msa0813270:five_prime_UTR 35.0%
! GAACTTTTACCAAACATAGC+AGG + chr5_3:43869292-43869311 None:intergenic 35.0%
CCTTTACGTGATCATACATT+TGG + chr5_3:43869358-43869377 None:intergenic 35.0%
CCAAATGTATGATCACGTAA+AGG - chr5_3:43869355-43869374 Msa0813270:five_prime_UTR 35.0%
TCATGAAAATATGCAGGTGA+TGG - chr5_3:43869450-43869469 Msa0813270:five_prime_UTR 35.0%
GAAACACCAATAGTCAGAAT+TGG - chr5_3:43869527-43869546 Msa0813270:five_prime_UTR 35.0%
TTGCATTGCTCCTTTATTGT+TGG + chr5_3:43869663-43869682 None:intergenic 35.0%
AACAATAAAGGAGCAATGCA+AGG - chr5_3:43869662-43869681 Msa0813270:five_prime_UTR 35.0%
GAATCAAAAAGCAGAGATGT+TGG - chr5_3:43869774-43869793 Msa0813270:five_prime_UTR 35.0%
AAAGAGAAACTCGCATAACA+AGG + chr5_3:43869912-43869931 None:intergenic 35.0%
!! GACTGACTGTAATTTCTAGT+CGG - chr5_3:43867519-43867538 Msa0813270:intron 35.0%
CCTGTATGTTTCATACATGA+AGG + chr5_3:43870229-43870248 None:intergenic 35.0%
CCTTCATGTATGAAACATAC+AGG - chr5_3:43870226-43870245 Msa0813270:five_prime_UTR 35.0%
ATGTATGAAACATACAGGCA+AGG - chr5_3:43870231-43870250 Msa0813270:five_prime_UTR 35.0%
TGTATGAAACATACAGGCAA+GGG - chr5_3:43870232-43870251 Msa0813270:five_prime_UTR 35.0%
! GCAAGGGACTGAATATATTT+TGG - chr5_3:43870248-43870267 Msa0813270:five_prime_UTR 35.0%
ATTGATATGGTTGGCATGAA+AGG - chr5_3:43870341-43870360 Msa0813270:five_prime_UTR 35.0%
AATGTTGCTGACAAGACATA+AGG - chr5_3:43870499-43870518 Msa0813270:five_prime_UTR 35.0%
ATGTTGCTGACAAGACATAA+GGG - chr5_3:43870500-43870519 Msa0813270:five_prime_UTR 35.0%
AAAAACTACACTAGAGGGAT+TGG + chr5_3:43870547-43870566 None:intergenic 35.0%
! TAATCAGACATTTTGTGCCT+TGG - chr5_3:43870582-43870601 Msa0813270:five_prime_UTR 35.0%
! AATCAGACATTTTGTGCCTT+GGG - chr5_3:43870583-43870602 Msa0813270:five_prime_UTR 35.0%
AACAGTGAAATTAGAGAGGT+TGG + chr5_3:43870804-43870823 None:intergenic 35.0%
TAGCTTAATAGAGCAGTCTG+TGG + chr5_3:43863089-43863108 None:intergenic 40.0%
CAGACTGCTCTATTAAGCTA+TGG - chr5_3:43863089-43863108 Msa0813270:three_prime_UTR 40.0%
ATCAAGTCTGGTAGAGTTAG+AGG - chr5_3:43863169-43863188 Msa0813270:three_prime_UTR 40.0%
CTAAAGTTTCGCCATGAGAT+CGG - chr5_3:43863232-43863251 Msa0813270:three_prime_UTR 40.0%
GGTTGGATGATATTGCTGAA+AGG - chr5_3:43863281-43863300 Msa0813270:three_prime_UTR 40.0%
TGGATGATATTGCTGAAAGG+AGG - chr5_3:43863284-43863303 Msa0813270:three_prime_UTR 40.0%
!!! TTTTTTCTACAGGAGGGTAC+TGG - chr5_3:43863313-43863332 Msa0813270:three_prime_UTR 40.0%
GCCATTCAGCTACTTCATTT+GGG + chr5_3:43863354-43863373 None:intergenic 40.0%
TGGTTCAGTAATAATAGCGC+TGG + chr5_3:43863383-43863402 None:intergenic 40.0%
! TCTTCTCGTCCAAACACTTT+TGG + chr5_3:43863403-43863422 None:intergenic 40.0%
TTTCCATCTATCCCGTTTCT+GGG - chr5_3:43863476-43863495 Msa0813270:intron 40.0%
! TGTAACACAGAAAAAGGTGC+GGG - chr5_3:43863675-43863694 Msa0813270:three_prime_UTR 40.0%
! TTTTGCAACAACCTCATCAC+GGG + chr5_3:43863851-43863870 None:intergenic 40.0%
GAGGTTGTTGCAAAAATCAC+AGG - chr5_3:43863856-43863875 Msa0813270:three_prime_UTR 40.0%
AGATCTTGTGGCAATAGGAA+AGG - chr5_3:43863975-43863994 Msa0813270:intron 40.0%
GAGCTCAAGGAATGAAGAAA+AGG - chr5_3:43864056-43864075 Msa0813270:CDS 40.0%
!! GAGAAACATTGCTTTAGGGT+TGG + chr5_3:43864174-43864193 None:intergenic 40.0%
ATTCGACTTTGGATGGCTAA+TGG - chr5_3:43864243-43864262 Msa0813270:CDS 40.0%
CGTTGAAGATGTTGGAAACA+TGG - chr5_3:43864293-43864312 Msa0813270:CDS 40.0%
! TGTTGGAAACATGGTTTGGA+AGG - chr5_3:43864302-43864321 Msa0813270:CDS 40.0%
CAAGTCAAACAATGTTCGCA+AGG + chr5_3:43864559-43864578 None:intergenic 40.0%
CTTGCGAACATTGTTTGACT+TGG - chr5_3:43864557-43864576 Msa0813270:intron 40.0%
GAGAGCGATTTAATGGAAAG+TGG + chr5_3:43864608-43864627 None:intergenic 40.0%
TCCATTAAATCGCTCTCTTC+GGG - chr5_3:43864611-43864630 Msa0813270:intron 40.0%
GTTAAGCAAGCCAAACGTTT+CGG + chr5_3:43864795-43864814 None:intergenic 40.0%
! CAGTTTATCTGAAGCTGAAG+CGG - chr5_3:43865004-43865023 Msa0813270:intron 40.0%
CTCAGCACTAGTAATAGTTG+GGG + chr5_3:43865090-43865109 None:intergenic 40.0%
GCTCAGCACTAGTAATAGTT+GGG + chr5_3:43865091-43865110 None:intergenic 40.0%
TGCTCAGCACTAGTAATAGT+TGG + chr5_3:43865092-43865111 None:intergenic 40.0%
AAGCACTTGAGATTTGAGTG+AGG + chr5_3:43865134-43865153 None:intergenic 40.0%
! CTTGGATGATGATGAATCTC+AGG - chr5_3:43865322-43865341 Msa0813270:intron 40.0%
! GATGATGATGAATCTCAGGA+TGG - chr5_3:43865326-43865345 Msa0813270:intron 40.0%
TGATGAATCTCAGGATGGTA+TGG - chr5_3:43865331-43865350 Msa0813270:intron 40.0%
AGTAAAGTTCCTCCAGAGAT+GGG + chr5_3:43865370-43865389 None:intergenic 40.0%
AAGTAAAGTTCCTCCAGAGA+TGG + chr5_3:43865371-43865390 None:intergenic 40.0%
ATAACCCCTCTATGTTTGGT+AGG + chr5_3:43865400-43865419 None:intergenic 40.0%
CATAGAGGGGTTATTGAAAG+TGG - chr5_3:43865406-43865425 Msa0813270:intron 40.0%
GGGTTATTGAAAGTGGAAAG+AGG - chr5_3:43865413-43865432 Msa0813270:intron 40.0%
! ATCTCCTTTTGCCCTAAACT+TGG - chr5_3:43865467-43865486 Msa0813270:intron 40.0%
TGTTACATCCCTCAACATAG+AGG + chr5_3:43865523-43865542 None:intergenic 40.0%
ACTAAGCTTACCCTATTTGG+CGG - chr5_3:43865581-43865600 Msa0813270:CDS 40.0%
TATTCCTTCACCGCCAAATA+GGG + chr5_3:43865594-43865613 None:intergenic 40.0%
TTATTCCTTCACCGCCAAAT+AGG + chr5_3:43865595-43865614 None:intergenic 40.0%
TATACAGAGTCGTCAAAGCT+GGG + chr5_3:43865718-43865737 None:intergenic 40.0%
ATATACAGAGTCGTCAAAGC+TGG + chr5_3:43865719-43865738 None:intergenic 40.0%
TTGACGACTCTGTATATCTC+TGG - chr5_3:43865722-43865741 Msa0813270:CDS 40.0%
AGTCCTTACCAGAGCAAAAT+TGG - chr5_3:43865759-43865778 Msa0813270:CDS 40.0%
GTCCTTACCAGAGCAAAATT+GGG - chr5_3:43865760-43865779 Msa0813270:CDS 40.0%
! TTCCCAATTTTGCTCTGGTA+AGG + chr5_3:43865765-43865784 None:intergenic 40.0%
! AGACTTTCCCAATTTTGCTC+TGG + chr5_3:43865770-43865789 None:intergenic 40.0%
!! CCAAATCTCTAGAGTTCGAA+GGG + chr5_3:43865798-43865817 None:intergenic 40.0%
! CCTTCGAACTCTAGAGATTT+GGG - chr5_3:43865796-43865815 Msa0813270:intron 40.0%
! CTTCGAACTCTAGAGATTTG+GGG - chr5_3:43865797-43865816 Msa0813270:intron 40.0%
ATGGTGATTGAGGCAGATAA+GGG + chr5_3:43866005-43866024 None:intergenic 40.0%
GATATTTGCGATGGTGATTG+AGG + chr5_3:43866015-43866034 None:intergenic 40.0%
CGTTAATCCCGTCATTTGTA+GGG + chr5_3:43866343-43866362 None:intergenic 40.0%
! CCTACAAATGACGGGATTAA+CGG - chr5_3:43866341-43866360 Msa0813270:intron 40.0%
! CTACAAATGACGGGATTAAC+GGG - chr5_3:43866342-43866361 Msa0813270:intron 40.0%
AAGACGTCGTCTTCATCATT+AGG + chr5_3:43866378-43866397 None:intergenic 40.0%
! ATGATGAAGACGACGTCTTT+TGG - chr5_3:43866379-43866398 Msa0813270:intron 40.0%
! TGATGAAGACGACGTCTTTT+GGG - chr5_3:43866380-43866399 Msa0813270:intron 40.0%
!! GGATTGCGATTTTGACAATC+GGG - chr5_3:43866409-43866428 Msa0813270:intron 40.0%
!! GATTGCGATTTTGACAATCG+GGG - chr5_3:43866410-43866429 Msa0813270:intron 40.0%
CATCAAAGCAATTGCATCCT+TGG + chr5_3:43866723-43866742 None:intergenic 40.0%
CAAGGATGCAATTGCTTTGA+TGG - chr5_3:43866721-43866740 Msa0813270:intron 40.0%
AACATGAGAAGAGCAATGCA+AGG - chr5_3:43867010-43867029 Msa0813270:intron 40.0%
! GATATTGGTGTTTCTGCTTC+TGG - chr5_3:43867125-43867144 Msa0813270:intron 40.0%
! AAGGTGCCTACAAGTTTAGT+CGG + chr5_3:43867163-43867182 None:intergenic 40.0%
AGAAAGATGGAGGGAGATTA+AGG + chr5_3:43867182-43867201 None:intergenic 40.0%
CACAAACGAAAGAAAGATGG+AGG + chr5_3:43867192-43867211 None:intergenic 40.0%
GCAAAAACGGTACAAGAGAT+TGG + chr5_3:43867239-43867258 None:intergenic 40.0%
!! ATCTCTTGTACCGTTTTTGC+AGG - chr5_3:43867239-43867258 Msa0813270:intron 40.0%
GGAGACCATAGTGAAAAAAC+AGG + chr5_3:43867275-43867294 None:intergenic 40.0%
CAACATGTGTGTAATACTCC+GGG - chr5_3:43867674-43867693 Msa0813270:five_prime_UTR 40.0%
! GCAGATTTTCTGTCTTTGGT+TGG + chr5_3:43867854-43867873 None:intergenic 40.0%
ACCAAAGACAGAAAATCTGC+AGG - chr5_3:43867854-43867873 Msa0813270:intron 40.0%
! ACCTGCAGATTTTCTGTCTT+TGG + chr5_3:43867858-43867877 None:intergenic 40.0%
AATCCCAACCATGTTTGTGT+CGG - chr5_3:43867986-43868005 Msa0813270:five_prime_UTR 40.0%
AACATTGTCCGACACAAACA+TGG + chr5_3:43867997-43868016 None:intergenic 40.0%
CATATCCTGTGAAACTGAAC+AGG - chr5_3:43868215-43868234 Msa0813270:five_prime_UTR 40.0%
GGTTTCAAATACCTTATGGC+AGG + chr5_3:43868296-43868315 None:intergenic 40.0%
TTGTGGTTGCCCAAATTCAA+AGG - chr5_3:43868341-43868360 Msa0813270:five_prime_UTR 40.0%
! CCCAAATTCAAAGGAGTGTA+AGG - chr5_3:43868350-43868369 Msa0813270:five_prime_UTR 40.0%
TAGAAGCTCAACCAACTCAT+GGG + chr5_3:43869230-43869249 None:intergenic 40.0%
TGATCACGTAAAGGTAACCT+TGG - chr5_3:43869364-43869383 Msa0813270:five_prime_UTR 40.0%
! GGCAGTTCAAGTTTAATCAG+CGG - chr5_3:43869505-43869524 Msa0813270:five_prime_UTR 40.0%
ACATCGCCAATTCTGACTAT+TGG + chr5_3:43869536-43869555 None:intergenic 40.0%
AATAAAGGAGCAATGCAAGG+AGG - chr5_3:43869665-43869684 Msa0813270:five_prime_UTR 40.0%
AAAGGAGAGGATGTTGACAA+TGG - chr5_3:43870359-43870378 Msa0813270:five_prime_UTR 40.0%
! AGTAACTTTGGCTCATGTGT+TGG + chr5_3:43870389-43870408 None:intergenic 40.0%
! ATCAGACATTTTGTGCCTTG+GGG - chr5_3:43870584-43870603 Msa0813270:five_prime_UTR 40.0%
TGAAATTAGAGAGGTTGGCA+TGG + chr5_3:43870799-43870818 None:intergenic 40.0%
TTAGGACAGAAGCTGTAAGT+TGG - chr5_3:43870825-43870844 Msa0813270:five_prime_UTR 40.0%
!! GAATGAGTGCTGAACTATGC+AGG + chr5_3:43862847-43862866 None:intergenic 45.0%
CTTCTCAGCATCTTCGAGAA+CGG + chr5_3:43863059-43863078 None:intergenic 45.0%
GATGAGTTCTCGATCAAGTC+TGG - chr5_3:43863157-43863176 Msa0813270:three_prime_UTR 45.0%
! CTCATGGCGAAACTTTAGAG+AGG + chr5_3:43863230-43863249 None:intergenic 45.0%
TCAACCTGTTACCGATCTCA+TGG + chr5_3:43863246-43863265 None:intergenic 45.0%
GGTTGAAAGAGATTACAGGG+AGG - chr5_3:43863260-43863279 Msa0813270:three_prime_UTR 45.0%
GAAAGAGATTACAGGGAGGT+TGG - chr5_3:43863264-43863283 Msa0813270:three_prime_UTR 45.0%
GCCCAAATGAAGTAGCTGAA+TGG - chr5_3:43863350-43863369 Msa0813270:three_prime_UTR 45.0%
CGCCATTCAGCTACTTCATT+TGG + chr5_3:43863355-43863374 None:intergenic 45.0%
AACGGGATAGATGGAAAGGT+CGG + chr5_3:43863473-43863492 None:intergenic 45.0%
CAGAAACGGGATAGATGGAA+AGG + chr5_3:43863477-43863496 None:intergenic 45.0%
CTTTCCATCTATCCCGTTTC+TGG - chr5_3:43863475-43863494 Msa0813270:intron 45.0%
TAACCCAGAAACGGGATAGA+TGG + chr5_3:43863482-43863501 None:intergenic 45.0%
! ATCTATCCCGTTTCTGGGTT+AGG - chr5_3:43863481-43863500 Msa0813270:intron 45.0%
CTGAGAATTTCTCGGTCAAC+AGG - chr5_3:43863593-43863612 Msa0813270:intron 45.0%
!!! TGCTGGTTTTGGATGATGTG+TGG - chr5_3:43863722-43863741 Msa0813270:intron 45.0%
CAGGGTTAACACGAGAGAAA+TGG - chr5_3:43863767-43863786 Msa0813270:intron 45.0%
GTGTTGTCATGTGGATCCAA+AGG - chr5_3:43863805-43863824 Msa0813270:three_prime_UTR 45.0%
ATCACGGGTGGACACTAAAA+TGG + chr5_3:43863836-43863855 None:intergenic 45.0%
TGGGAAACTCACTGTTTGTC+TGG - chr5_3:43863883-43863902 Msa0813270:three_prime_UTR 45.0%
! GTCTCTCTGATGATGATTGC+TGG - chr5_3:43863905-43863924 Msa0813270:three_prime_UTR 45.0%
!! CCTCTTGCAGCAAAAGCATT+GGG - chr5_3:43864024-43864043 Msa0813270:CDS 45.0%
!! CTCTTGCAGCAAAAGCATTG+GGG - chr5_3:43864025-43864044 Msa0813270:CDS 45.0%
!! TCTTGCAGCAAAAGCATTGG+GGG - chr5_3:43864026-43864045 Msa0813270:CDS 45.0%
! TCACTGATTGAGCGAGATCA+TGG + chr5_3:43864410-43864429 None:intergenic 45.0%
TGATCTCGCTCAATCAGTGA+CGG - chr5_3:43864410-43864429 Msa0813270:CDS 45.0%
ACCCGAAGAGAGCGATTTAA+TGG + chr5_3:43864615-43864634 None:intergenic 45.0%
GAGTTGTCTTCCGAAACGTT+TGG - chr5_3:43864782-43864801 Msa0813270:intron 45.0%
AGCTGAAGCGGCTAATTTGA+AGG - chr5_3:43865016-43865035 Msa0813270:intron 45.0%
GCTGAAGCGGCTAATTTGAA+GGG - chr5_3:43865017-43865036 Msa0813270:intron 45.0%
!! ATTGTGCTGCTTCCGTTACT+TGG - chr5_3:43865245-43865264 Msa0813270:intron 45.0%
TGAATCTCAGGATGGTATGG+AGG - chr5_3:43865334-43865353 Msa0813270:intron 45.0%
! CAGTCCAAGTTTAGGGCAAA+AGG + chr5_3:43865474-43865493 None:intergenic 45.0%
ATGGCAGCAGTCCAAGTTTA+GGG + chr5_3:43865481-43865500 None:intergenic 45.0%
AAGCTTAGTAAGACCACGGA+AGG + chr5_3:43865570-43865589 None:intergenic 45.0%
GGGTAAGCTTAGTAAGACCA+CGG + chr5_3:43865574-43865593 None:intergenic 45.0%
AGGAATAACATCCTTCCCAG+AGG - chr5_3:43865607-43865626 Msa0813270:intron 45.0%
GGAATAACATCCTTCCCAGA+GGG - chr5_3:43865608-43865627 Msa0813270:intron 45.0%
GAATAACATCCTTCCCAGAG+GGG - chr5_3:43865609-43865628 Msa0813270:intron 45.0%
! GGTTTTTGAACATCCCCTCT+GGG + chr5_3:43865625-43865644 None:intergenic 45.0%
! AGGTTTTTGAACATCCCCTC+TGG + chr5_3:43865626-43865645 None:intergenic 45.0%
GCTGGGTTAAAGGGTTCATT+TGG + chr5_3:43865701-43865720 None:intergenic 45.0%
GTCGTCAAAGCTGGGTTAAA+GGG + chr5_3:43865710-43865729 None:intergenic 45.0%
AGTCGTCAAAGCTGGGTTAA+AGG + chr5_3:43865711-43865730 None:intergenic 45.0%
! CCCTTCGAACTCTAGAGATT+TGG - chr5_3:43865795-43865814 Msa0813270:intron 45.0%
!! CCCAAATCTCTAGAGTTCGA+AGG + chr5_3:43865799-43865818 None:intergenic 45.0%
! CTAGAGATTTGGGGTTGTGA+AGG - chr5_3:43865806-43865825 Msa0813270:intron 45.0%
TGAAGGATTGCAATGCTTGC+CGG - chr5_3:43865823-43865842 Msa0813270:intron 45.0%
ACAGAAGCTCAAGAGAAGTG+AGG + chr5_3:43865862-43865881 None:intergenic 45.0%
AACGATGCAAAGAGGGAACA+GGG - chr5_3:43865909-43865928 Msa0813270:intron 45.0%
GATGGTGATTGAGGCAGATA+AGG + chr5_3:43866006-43866025 None:intergenic 45.0%
AGGATTGCCTTTGACACACA+AGG - chr5_3:43866312-43866331 Msa0813270:intron 45.0%
GGATTGCCTTTGACACACAA+GGG - chr5_3:43866313-43866332 Msa0813270:intron 45.0%
CCGTTAATCCCGTCATTTGT+AGG + chr5_3:43866344-43866363 None:intergenic 45.0%
TGGGTGCAGAACAAAGATCA+TGG - chr5_3:43866697-43866716 Msa0813270:intron 45.0%
CAGAACAAAGATCATGGCCA+AGG - chr5_3:43866703-43866722 Msa0813270:intron 45.0%
TGAGAAGAGCAATGCAAGGA+CGG - chr5_3:43867014-43867033 Msa0813270:intron 45.0%
TAGAAATGAGGCCCTGTGTT+CGG - chr5_3:43867784-43867803 Msa0813270:five_prime_UTR 45.0%
AAGCAACAATGCCGAACACA+GGG + chr5_3:43867798-43867817 None:intergenic 45.0%
TAAGCAACAATGCCGAACAC+AGG + chr5_3:43867799-43867818 None:intergenic 45.0%
! TCGGCATTGTTGCTTACCAA+AGG - chr5_3:43867803-43867822 Msa0813270:five_prime_UTR 45.0%
! CGGCATTGTTGCTTACCAAA+GGG - chr5_3:43867804-43867823 Msa0813270:five_prime_UTR 45.0%
AAGCATCACATTGCTCCCTT+TGG + chr5_3:43867822-43867841 None:intergenic 45.0%
TGTCCGACACAAACATGGTT+GGG + chr5_3:43867992-43868011 None:intergenic 45.0%
TTGTCCGACACAAACATGGT+TGG + chr5_3:43867993-43868012 None:intergenic 45.0%
CTTGCTTTCAGGAAAAGCAG+TGG + chr5_3:43868037-43868056 None:intergenic 45.0%
!! CTGCTTTTCCTGAAAGCAAG+AGG - chr5_3:43868037-43868056 Msa0813270:five_prime_UTR 45.0%
! TGAAGCATCCTCTTGCTTTC+AGG + chr5_3:43868048-43868067 None:intergenic 45.0%
TGTCACCTGTTCAGTTTCAC+AGG + chr5_3:43868223-43868242 None:intergenic 45.0%
GAATTGAGATCCCTGCCATA+AGG - chr5_3:43868282-43868301 Msa0813270:five_prime_UTR 45.0%
CTTGGTTCAAGCTATTAGCC+AGG - chr5_3:43869073-43869092 Msa0813270:five_prime_UTR 45.0%
TGAAGAGCTGTATACACACC+TGG + chr5_3:43869094-43869113 None:intergenic 45.0%
AGAAGCTCAACCAACTCATG+GGG + chr5_3:43869229-43869248 None:intergenic 45.0%
GTAGAAGCTCAACCAACTCA+TGG + chr5_3:43869231-43869250 None:intergenic 45.0%
TAGGAACTGAAGAATGGCCA+AGG + chr5_3:43869384-43869403 None:intergenic 45.0%
TAGAAGAGTGAGATGCTTGC+CGG - chr5_3:43869590-43869609 Msa0813270:five_prime_UTR 45.0%
TCAGAACCTCGAGAGAAATG+AGG + chr5_3:43869629-43869648 None:intergenic 45.0%
GGATATGCCTCTCATTTCTC+TGG - chr5_3:43869876-43869895 Msa0813270:five_prime_UTR 45.0%
CCATAGTCCAGAGAAATGAG+AGG + chr5_3:43869886-43869905 None:intergenic 45.0%
CCTCTCATTTCTCTGGACTA+TGG - chr5_3:43869883-43869902 Msa0813270:five_prime_UTR 45.0%
! AGCTTGTTCACAGCCTTCTT+TGG + chr5_3:43870290-43870309 None:intergenic 45.0%
TATGGTTGGCATGAAAGGAG+AGG - chr5_3:43870346-43870365 Msa0813270:five_prime_UTR 45.0%
TATAGCTTCTCCTAAGCCTC+AGG - chr5_3:43870441-43870460 Msa0813270:five_prime_UTR 45.0%
AAATCAAGGACAACCTCCTG+AGG + chr5_3:43870460-43870479 None:intergenic 45.0%
! TCAGACATTTTGTGCCTTGG+GGG - chr5_3:43870585-43870604 Msa0813270:five_prime_UTR 45.0%
!! AAAAATAAAAAAAATCAAAA+AGG + chr5_3:43866255-43866274 None:intergenic 5.0%
!! AATATATGTTAATATATTAT+AGG + chr5_3:43869403-43869422 None:intergenic 5.0%
AAAATGGCCGACGCTTTGCT+CGG - chr5_3:43862926-43862945 Msa0813270:three_prime_UTR 50.0%
TTCGCCATGAGATCGGTAAC+AGG - chr5_3:43863239-43863258 Msa0813270:three_prime_UTR 50.0%
!! AGGAGGGTACTGGAACTGTT+CGG - chr5_3:43863323-43863342 Msa0813270:three_prime_UTR 50.0%
GTTTCTTCTCACCCAAGCGA+AGG - chr5_3:43863444-43863463 Msa0813270:intron 50.0%
! TATCCCGTTTCTGGGTTAGG+TGG - chr5_3:43863484-43863503 Msa0813270:intron 50.0%
! ATCCCGTTTCTGGGTTAGGT+GGG - chr5_3:43863485-43863504 Msa0813270:intron 50.0%
AAGCCCACCTAACCCAGAAA+CGG + chr5_3:43863491-43863510 None:intergenic 50.0%
AAGGTGCGGGAATTGTTGCA+AGG - chr5_3:43863688-43863707 Msa0813270:intron 50.0%
TTTAGTGTCCACCCGTGATG+AGG - chr5_3:43863837-43863856 Msa0813270:three_prime_UTR 50.0%
! AGAAGAGCGTGCAGATCTTG+TGG - chr5_3:43863963-43863982 Msa0813270:intron 50.0%
CGTGCAGATCTTGTGGCAAT+AGG - chr5_3:43863970-43863989 Msa0813270:intron 50.0%
! GCCTCTTGCAGCAAAAGCAT+TGG - chr5_3:43864023-43864042 Msa0813270:CDS 50.0%
! CCCAATGCTTTTGCTGCAAG+AGG + chr5_3:43864027-43864046 None:intergenic 50.0%
!! CTTGCAGCAAAAGCATTGGG+GGG - chr5_3:43864027-43864046 Msa0813270:CDS 50.0%
GATCTCGCTCAATCAGTGAC+GGG - chr5_3:43864411-43864430 Msa0813270:CDS 50.0%
ATCTCGCTCAATCAGTGACG+GGG - chr5_3:43864412-43864431 Msa0813270:CDS 50.0%
!! TCGGGTTTTATGCACATCCC+AGG - chr5_3:43864629-43864648 Msa0813270:intron 50.0%
TCAGGATGGTATGGAGGTGA+GGG - chr5_3:43865340-43865359 Msa0813270:intron 50.0%
CATGGCAGCAGTCCAAGTTT+AGG + chr5_3:43865482-43865501 None:intergenic 50.0%
AGGTCAATCTCTACCTTCCG+TGG - chr5_3:43865554-43865573 Msa0813270:CDS 50.0%
CTTACCCTATTTGGCGGTGA+AGG - chr5_3:43865587-43865606 Msa0813270:CDS 50.0%
! TTTGAACATCCCCTCTGGGA+AGG + chr5_3:43865621-43865640 None:intergenic 50.0%
GAACGATGCAAAGAGGGAAC+AGG - chr5_3:43865908-43865927 Msa0813270:intron 50.0%
ACGATGCAAAGAGGGAACAG+GGG - chr5_3:43865910-43865929 Msa0813270:intron 50.0%
!! TTCTTTGGAACCCATTCCGC+AGG - chr5_3:43866121-43866140 Msa0813270:intron 50.0%
TGGATCTCTTCCTGCGGAAT+GGG + chr5_3:43866134-43866153 None:intergenic 50.0%
GTACTCTGGATCTCTTCCTG+CGG + chr5_3:43866140-43866159 None:intergenic 50.0%
TTGCCTTTGACACACAAGGG+TGG - chr5_3:43866316-43866335 Msa0813270:intron 50.0%
TGCCTTTGACACACAAGGGT+GGG - chr5_3:43866317-43866336 Msa0813270:intron 50.0%
!! ACGACGTCTTTTGGGTATCG+AGG - chr5_3:43866388-43866407 Msa0813270:intron 50.0%
TGCTGAAGTTCCCCATGAGT+TGG - chr5_3:43869216-43869235 Msa0813270:five_prime_UTR 50.0%
ATGAGGTGTGGAATACCCTC+CGG + chr5_3:43869612-43869631 None:intergenic 50.0%
TCCACACCTCATTTCTCTCG+AGG - chr5_3:43869620-43869639 Msa0813270:five_prime_UTR 50.0%
ACCTCGAGAGAAATGAGGTG+TGG + chr5_3:43869624-43869643 None:intergenic 50.0%
GAGCAATGCAAGGAGGAAAC+AGG - chr5_3:43869672-43869691 Msa0813270:five_prime_UTR 50.0%
ATGCAAGGAGGAAACAGGAG+AGG - chr5_3:43869677-43869696 Msa0813270:five_prime_UTR 50.0%
CTTGGTACTCTCCTCTTTGC+AGG - chr5_3:43869855-43869874 Msa0813270:five_prime_UTR 50.0%
! GAGAGGCATATCCTGCAAAG+AGG + chr5_3:43869869-43869888 None:intergenic 50.0%
CTCTAGATTGGGCAGGATTC+AGG - chr5_3:43870608-43870627 Msa0813270:five_prime_UTR 50.0%
CACAACTCCGAGCAAAGCGT+CGG + chr5_3:43862936-43862955 None:intergenic 55.0%
!! GGAGGGTACTGGAACTGTTC+GGG - chr5_3:43863324-43863343 Msa0813270:three_prime_UTR 55.0%
AAGGTCGGAGTCCTTCGCTT+GGG + chr5_3:43863458-43863477 None:intergenic 55.0%
AAAGGTCGGAGTCCTTCGCT+TGG + chr5_3:43863459-43863478 None:intergenic 55.0%
AGCCCACCTAACCCAGAAAC+GGG + chr5_3:43863490-43863509 None:intergenic 55.0%
! GTTTCTGGGTTAGGTGGGCT+TGG - chr5_3:43863490-43863509 Msa0813270:intron 55.0%
TGCAACAACCTCATCACGGG+TGG + chr5_3:43863848-43863867 None:intergenic 55.0%
TGGGGGGTTTGATGAGCTCA+AGG - chr5_3:43864043-43864062 Msa0813270:CDS 55.0%
CTCAGGATGGTATGGAGGTG+AGG - chr5_3:43865339-43865358 Msa0813270:intron 55.0%
! GGTGAGGGTTTTCCCATCTC+TGG - chr5_3:43865355-43865374 Msa0813270:intron 55.0%
! GAGGGTTTTCCCATCTCTGG+AGG - chr5_3:43865358-43865377 Msa0813270:intron 55.0%
AGGATTGCAATGCTTGCCGG+AGG - chr5_3:43865826-43865845 Msa0813270:intron 55.0%
GGATTGCAATGCTTGCCGGA+GGG - chr5_3:43865827-43865846 Msa0813270:intron 55.0%
!! GTGAGGTGTCGAATACCCTC+CGG + chr5_3:43865845-43865864 None:intergenic 55.0%
ATGCAAAGAGGGAACAGGGG+AGG - chr5_3:43865913-43865932 Msa0813270:intron 55.0%
AAGAGGGAACAGGGGAGGAT+TGG - chr5_3:43865918-43865937 Msa0813270:intron 55.0%
AGAGGGAACAGGGGAGGATT+GGG - chr5_3:43865919-43865938 Msa0813270:intron 55.0%
CTGGATCTCTTCCTGCGGAA+TGG + chr5_3:43866135-43866154 None:intergenic 55.0%
AGGGTGGGCCCTACAAATGA+CGG - chr5_3:43866332-43866351 Msa0813270:intron 55.0%
GCAATGCAAGGACGGAACAG+TGG - chr5_3:43867022-43867041 Msa0813270:intron 55.0%
ATGCAAGGACGGAACAGTGG+AGG - chr5_3:43867025-43867044 Msa0813270:intron 55.0%
AAGAGTGAGATGCTTGCCGG+AGG - chr5_3:43869593-43869612 Msa0813270:five_prime_UTR 55.0%
AGAGTGAGATGCTTGCCGGA+GGG - chr5_3:43869594-43869613 Msa0813270:five_prime_UTR 55.0%
AGCTTCTCCTAAGCCTCAGG+AGG - chr5_3:43870444-43870463 Msa0813270:five_prime_UTR 55.0%
AGGACAACCTCCTGAGGCTT+AGG + chr5_3:43870454-43870473 None:intergenic 55.0%
!! TGCCTTGGGGGCTCTAGATT+GGG - chr5_3:43870597-43870616 Msa0813270:five_prime_UTR 55.0%
GGCCCACCCTTGTGTGTCAA+AGG + chr5_3:43866322-43866341 None:intergenic 60.0%
GGGTGGGCCCTACAAATGAC+GGG - chr5_3:43866333-43866352 Msa0813270:intron 60.0%
AGGACGGAACAGTGGAGGAC+TGG - chr5_3:43867030-43867049 Msa0813270:intron 60.0%
!! GTGCCTTGGGGGCTCTAGAT+TGG - chr5_3:43870596-43870615 Msa0813270:five_prime_UTR 60.0%
! TGCCCAATCTAGAGCCCCCA+AGG + chr5_3:43870602-43870621 None:intergenic 60.0%
!! TTGGGGGCTCTAGATTGGGC+AGG - chr5_3:43870601-43870620 Msa0813270:five_prime_UTR 60.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 43862732 43870851 43862732 ID=Msa0813270;Name=Msa0813270
chr5_3 mRNA 43862732 43870851 43862732 ID=Msa0813270-mRNA-1;Parent=Msa0813270;Name=Msa0813270-mRNA-1;_AED=0.16;_eAED=0.16;_QI=3309|0.78|0.8|1|0.28|0.33|15|966|286
chr5_3 exon 43862732 43863426 43862732 ID=Msa0813270-mRNA-1:exon:13519;Parent=Msa0813270-mRNA-1
chr5_3 exon 43863640 43863706 43863640 ID=Msa0813270-mRNA-1:exon:13518;Parent=Msa0813270-mRNA-1
chr5_3 exon 43863792 43863951 43863792 ID=Msa0813270-mRNA-1:exon:13517;Parent=Msa0813270-mRNA-1
chr5_3 exon 43863978 43864117 43863978 ID=Msa0813270-mRNA-1:exon:13516;Parent=Msa0813270-mRNA-1
chr5_3 exon 43864223 43864465 43864223 ID=Msa0813270-mRNA-1:exon:13515;Parent=Msa0813270-mRNA-1
chr5_3 exon 43864573 43864624 43864573 ID=Msa0813270-mRNA-1:exon:13514;Parent=Msa0813270-mRNA-1
chr5_3 exon 43865492 43865618 43865492 ID=Msa0813270-mRNA-1:exon:13513;Parent=Msa0813270-mRNA-1
chr5_3 exon 43865708 43865796 43865708 ID=Msa0813270-mRNA-1:exon:13512;Parent=Msa0813270-mRNA-1
chr5_3 exon 43865936 43865963 43865936 ID=Msa0813270-mRNA-1:exon:13511;Parent=Msa0813270-mRNA-1
chr5_3 exon 43866256 43866322 43866256 ID=Msa0813270-mRNA-1:exon:13510;Parent=Msa0813270-mRNA-1
chr5_3 exon 43866412 43866592 43866412 ID=Msa0813270-mRNA-1:exon:13509;Parent=Msa0813270-mRNA-1
chr5_3 exon 43867373 43867440 43867373 ID=Msa0813270-mRNA-1:exon:13508;Parent=Msa0813270-mRNA-1
chr5_3 exon 43867539 43867551 43867539 ID=Msa0813270-mRNA-1:exon:13507;Parent=Msa0813270-mRNA-1
chr5_3 exon 43867577 43867849 43867577 ID=Msa0813270-mRNA-1:exon:13506;Parent=Msa0813270-mRNA-1
chr5_3 exon 43867919 43870851 43867919 ID=Msa0813270-mRNA-1:exon:13505;Parent=Msa0813270-mRNA-1
chr5_3 five_prime_UTR 43867919 43870851 43867919 ID=Msa0813270-mRNA-1:five_prime_utr;Parent=Msa0813270-mRNA-1
chr5_3 five_prime_UTR 43867577 43867849 43867577 ID=Msa0813270-mRNA-1:five_prime_utr;Parent=Msa0813270-mRNA-1
chr5_3 five_prime_UTR 43867539 43867551 43867539 ID=Msa0813270-mRNA-1:five_prime_utr;Parent=Msa0813270-mRNA-1
chr5_3 five_prime_UTR 43867373 43867440 43867373 ID=Msa0813270-mRNA-1:five_prime_utr;Parent=Msa0813270-mRNA-1
chr5_3 five_prime_UTR 43866571 43866592 43866571 ID=Msa0813270-mRNA-1:five_prime_utr;Parent=Msa0813270-mRNA-1
chr5_3 CDS 43866412 43866570 43866412 ID=Msa0813270-mRNA-1:cds;Parent=Msa0813270-mRNA-1
chr5_3 CDS 43866256 43866322 43866256 ID=Msa0813270-mRNA-1:cds;Parent=Msa0813270-mRNA-1
chr5_3 CDS 43865936 43865963 43865936 ID=Msa0813270-mRNA-1:cds;Parent=Msa0813270-mRNA-1
chr5_3 CDS 43865708 43865796 43865708 ID=Msa0813270-mRNA-1:cds;Parent=Msa0813270-mRNA-1
chr5_3 CDS 43865492 43865618 43865492 ID=Msa0813270-mRNA-1:cds;Parent=Msa0813270-mRNA-1
chr5_3 CDS 43864573 43864624 43864573 ID=Msa0813270-mRNA-1:cds;Parent=Msa0813270-mRNA-1
chr5_3 CDS 43864223 43864465 43864223 ID=Msa0813270-mRNA-1:cds;Parent=Msa0813270-mRNA-1
chr5_3 CDS 43864022 43864117 43864022 ID=Msa0813270-mRNA-1:cds;Parent=Msa0813270-mRNA-1
chr5_3 three_prime_UTR 43863978 43864021 43863978 ID=Msa0813270-mRNA-1:three_prime_utr;Parent=Msa0813270-mRNA-1
chr5_3 three_prime_UTR 43863792 43863951 43863792 ID=Msa0813270-mRNA-1:three_prime_utr;Parent=Msa0813270-mRNA-1
chr5_3 three_prime_UTR 43863640 43863706 43863640 ID=Msa0813270-mRNA-1:three_prime_utr;Parent=Msa0813270-mRNA-1
chr5_3 three_prime_UTR 43862732 43863426 43862732 ID=Msa0813270-mRNA-1:three_prime_utr;Parent=Msa0813270-mRNA-1
Gene Sequence

>Msa0813270

ATGAGAAGAGCAATGCAAGGACGGAACAGTGGAGGACTGGAACAAGATAGCACATATTCCGAACTTACACTTTTGGTGATGCTTTTATGTTCTATAGGAATCAAGAAGCATAGATATTGGTGTTTCTGCTTCTGGCTTGTCACATTTCCGACTAAACTTGATTTGACACTCCTGTTTTTTCACTATGGTCTCCTAGTTATGTTAGTTTCTCTTTGGTCTTTCATAGGAACCACTTGTTACATAGTTGTTAAAACAAATGAGGCCCTGTGTTCGGCATTGTTGCTTACCAAAGGGAGCAATGTGATGCTTAGCATGTTACCAACCAAAGACAGAAAATCTGCAGATATGTTGTGGAATGCTGCTGAATCCCAACCATGTTTGTGTCGGACAATGTTAATTGATCAATTTGTGTCCACTGCTTTTCCTGAAAGCAAGAGGATGCTTCAGCTGAACCACAGAAACTATAAGAGGAATCACTTGCTTTCTCAGTTTTTGTGTGGAATGTCTACGGGTAAAATTATTGAAGGTGTCATTGTATTTCATGTTATTTCAATATCTTTGTGTCCAATAGACATATTGTGGAACATATGGAGAAGATCTGTAATGAAAGTTTTTATGATTGCTGAAGTTCCCCATGAGTTGGTTGAGCTTCTACAAAATACAACACAATTATGCTTTTATTTGAAACTTCAACCTGCTATGTTTGGTAAAAGTTCACTCGACTCCATATCTCAAAATATTCAGCTTTTCGTGGATGATCCAAATGTGATGGACTTTCAAGTAAGAAATGTTTATGGAAGAGTTGGCAGTTCAAGTTTAATCAGCGGAAACACCAATAGTCAGAATTGGCGATGTTGTTAA
Protein sequence

>Msa0813270

MRRAMQGRNSGGLEQDSTYSELTLLVMLLCSIGIKKHRYWCFCFWLVTFPTKLDLTLLFFHYGLLVMLVSLWSFIGTTCYIVVKTNEALCSALLLTKGSNVMLSMLPTKDRKSADMLWNAAESQPCLCRTMLIDQFVSTAFPESKRMLQLNHRNYKRNHLLSQFLCGMSTGKIIEGVIVFHVISISLCPIDILWNIWRRSVMKVFMIAEVPHELVELLQNTTQLCFYLKLQPAMFGKSSLDSISQNIQLFVDDPNVMDFQVRNVYGRVGSSSLISGNTNSQNWRCC*