AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0853820

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0853820 MtrunA17_Chr5g0430631 81.034 58 3 1 146 203 3 52 1.95e-24 95.1
Msa0853820 MtrunA17_Chr3g0113701 37.209 172 65 4 85 242 882 1024 4.79e-19 89.0
Msa0853820 MtrunA17_Chr3g0105391 37.209 172 65 4 85 242 880 1022 8.95e-19 88.2
Msa0853820 MtrunA17_Chr5g0437311 32.394 213 93 6 85 282 881 1057 5.00e-17 82.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0853820 AT3G11130.1 36.047 172 67 4 85 242 881 1023 2.33e-18 87.0
Msa0853820 AT3G08530.1 36.047 172 67 4 85 242 881 1023 4.30e-18 86.3

Find 269 sgRNAs with CRISPR-Local

Find 624 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATGAATTTGCAACCATTTC+TGG 0.040658 5_4:-45838949 Msa0853820:five_prime_UTR
TTTAATTCATTTAAGGTATT+TGG 0.104472 5_4:-45837264 Msa0853820:five_prime_UTR
TTATTCCTTCACCGTTAATT+AGG 0.142404 5_4:+45836331 None:intergenic
CTCTCGAGGTTCTGAGAATT+TGG 0.156309 5_4:-45836056 Msa0853820:five_prime_UTR
TGAAGCATCCTCTTGCTTTC+AGG 0.176242 5_4:+45833999 None:intergenic
GATATTGGTGTTTCTGCTTC+TGG 0.180085 5_4:-45834919 Msa0853820:CDS
CTTCAGGATTTCTCTATCTT+TGG 0.180884 5_4:+45837724 None:intergenic
CTCAGCAATATCTTTGAAAA+AGG 0.198789 5_4:+45838735 None:intergenic
AGTCCTTACCAGAGCAAAAT+TGG 0.221990 5_4:-45836164 Msa0853820:five_prime_UTR
TTGGAGATGCCCAACATTAA+AGG 0.239322 5_4:-45836037 Msa0853820:five_prime_UTR
TAAAAGATACTTGCTAGTTT+TGG 0.245648 5_4:-45838218 Msa0853820:five_prime_UTR
CCTTCGAACTCTAGAGATTT+GGG 0.249558 5_4:-45836127 Msa0853820:five_prime_UTR
TTCTGTGATAAATTCTATAA+TGG 0.253654 5_4:+45838303 None:intergenic
CCCTTCGAACTCTAGAGATT+TGG 0.256069 5_4:-45836128 Msa0853820:five_prime_UTR
CGCCATTCAGCTACTTCATT+TGG 0.257899 5_4:+45838580 None:intergenic
TTTAATTTCTCTTGAACTTT+GGG 0.258179 5_4:-45836712 Msa0853820:five_prime_UTR
TTTCAAGTAAGAAATGTTTA+TGG 0.264509 5_4:-45832569 Msa0853820:CDS
TATGCTAACAAGGCATTATA+AGG 0.267753 5_4:+45830128 None:intergenic
GTTAAGCAAGCCAAGCGTTT+TGG 0.277432 5_4:+45837140 None:intergenic
CTGGGTTGACAGAAGATAAA+TGG 0.288286 5_4:-45838162 Msa0853820:five_prime_UTR
ATTTAATTTCTCTTGAACTT+TGG 0.289233 5_4:-45836713 Msa0853820:five_prime_UTR
TCTTCTCGTCCAAACACTTT+TGG 0.289392 5_4:+45838532 None:intergenic
AAAACTGGAATTATTAAGTA+TGG 0.292860 5_4:-45836637 Msa0853820:five_prime_UTR
GGGGCAAGAATGTATGTATT+TGG 0.295576 5_4:-45837507 Msa0853820:five_prime_UTR
ATATTCCGAACTTACACTTT+TGG 0.303961 5_4:-45834978 Msa0853820:CDS
TGTAATTTGTAAATTGAGTT+AGG 0.309216 5_4:+45837212 None:intergenic
CACAATTATTGAACAAATAA+AGG 0.310129 5_4:-45839215 Msa0853820:five_prime_UTR
CATGGCAGCAGTCCAAGTTT+AGG 0.313382 5_4:+45836444 None:intergenic
TTCAATAACCCCTCTATGTT+TGG 0.315839 5_4:+45836522 None:intergenic
TTCAGGATTTCTCTATCTTT+GGG 0.316405 5_4:+45837725 None:intergenic
AAGGATAAATGTTCTAATTC+AGG 0.319264 5_4:-45835743 Msa0853820:intron
ATTCAGCTTTGGATGGCTAA+TGG 0.323219 5_4:-45837692 Msa0853820:five_prime_UTR
ATCACGAGTGGATACTAAAA+TGG 0.323841 5_4:+45838096 None:intergenic
TAGTTATGTTAGTTTCTCTT+TGG 0.332213 5_4:-45834749 Msa0853820:CDS
TATTCCTTCACCGTTAATTA+GGG 0.336764 5_4:+45836332 None:intergenic
GCTGAATCAATTCGTCCTTC+AGG 0.345234 5_4:+45837708 None:intergenic
CCCAACATACCTTTCTCTTC+GGG 0.346235 5_4:-45837327 Msa0853820:five_prime_UTR
TCCCAACATACCTTTCTCTT+CGG 0.350547 5_4:-45837328 Msa0853820:five_prime_UTR
CTTTGATTTGATTCCAGAAA+TGG 0.355798 5_4:+45838936 None:intergenic
AGCAAAATGGATGAATATTC+TGG 0.356266 5_4:-45837584 Msa0853820:five_prime_UTR
AATTAAAGATAGTGAGCTTT+GGG 0.366773 5_4:-45837840 Msa0853820:five_prime_UTR
TGGATCTCTTCCTGCGGAAT+GGG 0.367375 5_4:+45835801 None:intergenic
ATTACTGAACCAAAAGTGTT+TGG 0.370947 5_4:-45838541 Msa0853820:five_prime_UTR
AATTTAGAGGTTGAAGATGT+TGG 0.373707 5_4:-45837653 Msa0853820:five_prime_UTR
AAACTTCAACCTGCTATGTT+TGG 0.374955 5_4:-45832764 Msa0853820:CDS
TTCCTTGTCTTTCTAAGTTG+TGG 0.375774 5_4:-45836479 Msa0853820:five_prime_UTR
ATAAAGGAAGGTATCAATAA+TGG 0.377344 5_4:-45839199 Msa0853820:five_prime_UTR
TGCATCGTTCCTTTAATGTT+GGG 0.377377 5_4:+45836028 None:intergenic
GATCTCGCTCAATCAGTAAT+GGG 0.378875 5_4:-45837527 Msa0853820:five_prime_UTR
ACTCAGCTTTCCCTAATTAA+CGG 0.379852 5_4:-45836342 Msa0853820:five_prime_UTR
TATTACACACATGTTGATCT+TGG 0.380005 5_4:+45834377 None:intergenic
GCCATTCAGCTACTTCATTT+GGG 0.381966 5_4:+45838581 None:intergenic
AGAGGGAACAGGGGAGGATT+GGG 0.384073 5_4:-45836004 Msa0853820:five_prime_UTR
ATCAAGTCTGGTAGAGTTAG+AGG 0.384361 5_4:-45838763 Msa0853820:five_prime_UTR
TAGTGATGGCATCCGGATAA+AGG 0.384447 5_4:+45837292 None:intergenic
TATTGCAAAGAGGAATTTAG+AGG 0.387795 5_4:-45837666 Msa0853820:five_prime_UTR
GAACGATGCAAAGAGGGAAC+AGG 0.395421 5_4:-45836015 Msa0853820:five_prime_UTR
AAGCATCACATTGCTCCCTT+TGG 0.395912 5_4:+45834225 None:intergenic
TTGCATCGTTCCTTTAATGT+TGG 0.397864 5_4:+45836027 None:intergenic
TTCCAATGTTAGGAAACATT+CGG 0.399086 5_4:+45837075 None:intergenic
TTGTTCAAACAATATGCATT+TGG 0.400696 5_4:-45837998 Msa0853820:five_prime_UTR
TCCAATGTTAGGAAACATTC+GGG 0.401883 5_4:+45837076 None:intergenic
TGGGAAACTCACCGTTTATC+TGG 0.403119 5_4:-45838046 Msa0853820:five_prime_UTR
ACACTCTTGACTCTTCACTA+TGG 0.404134 5_4:-45830217 Msa0853820:CDS
TGAAGGATTGCAATGCTTGC+CGG 0.404188 5_4:-45836100 Msa0853820:five_prime_UTR
TAGACATATTGTGGAACATA+TGG 0.409366 5_4:-45832880 Msa0853820:CDS
AAGAGGGAACAGGGGAGGAT+TGG 0.409457 5_4:-45836005 Msa0853820:five_prime_UTR
AAATTAAAGATAGTGAGCTT+TGG 0.410651 5_4:-45837841 Msa0853820:five_prime_UTR
GTTTCTCTTTGGTCTTTCAT+AGG 0.411687 5_4:-45834738 Msa0853820:intron
ATGGCAGCAGTCCAAGTTTA+GGG 0.413257 5_4:+45836445 None:intergenic
AACGACTTTGATCACATCTA+AGG 0.416679 5_4:+45838894 None:intergenic
AGGAGGGTACTGGAACTGTT+CGG 0.418186 5_4:-45838609 Msa0853820:five_prime_UTR
ATTGTGCGGCTTCCGTTACT+TGG 0.418690 5_4:-45836678 Msa0853820:five_prime_UTR
TTCGCCATGAGATCGGTAAC+AGG 0.420714 5_4:-45838693 Msa0853820:five_prime_UTR
AATAAAGTTACCAAACATAG+AGG 0.421302 5_4:-45836532 Msa0853820:five_prime_UTR
ACAGAGATTGAAGAGAAGTA+AGG 0.421576 5_4:+45836280 None:intergenic
AGGACGAATTGATTCAGCTT+TGG 0.424591 5_4:-45837703 Msa0853820:five_prime_UTR
CCTCTTGCAGCGAAAGCATT+GGG 0.425171 5_4:-45837905 Msa0853820:five_prime_UTR
CTCTTAAAGACCTCGTCGTA+TGG 0.426650 5_4:-45836413 Msa0853820:five_prime_UTR
CTGGATCTCTTCCTGCGGAA+TGG 0.426858 5_4:+45835800 None:intergenic
TACATTGTTAGTTTAGAGAA+AGG 0.432208 5_4:-45837023 Msa0853820:five_prime_UTR
GGAGGGTACTGGAACTGTTC+GGG 0.433594 5_4:-45838608 Msa0853820:five_prime_UTR
TCCCGAATGTTTCCTAACAT+TGG 0.434904 5_4:-45837077 Msa0853820:five_prime_UTR
TTGGAAATAAATTACTATGA+AGG 0.442231 5_4:-45836771 Msa0853820:five_prime_UTR
AGAAATGTTTATGGAAGAGT+TGG 0.443161 5_4:-45832560 Msa0853820:CDS
CATCACCAAAAGTGTAAGTT+CGG 0.447077 5_4:+45834973 None:intergenic
AACAGGTTGAAAGAGATTAC+AGG 0.450824 5_4:-45838676 Msa0853820:five_prime_UTR
AAAATGAACAATTGGAATCT+GGG 0.451587 5_4:-45838180 Msa0853820:five_prime_UTR
TGTCCGACACAAACATGGTT+GGG 0.452336 5_4:+45834055 None:intergenic
ATTTAAATGCAACACAGAAA+AGG 0.452902 5_4:-45838261 Msa0853820:five_prime_UTR
ATCATCGATTGCCCTAAACT+TGG 0.456811 5_4:-45836456 Msa0853820:five_prime_UTR
CCCGAAGAGAAAGGTATGTT+GGG 0.458292 5_4:+45837327 None:intergenic
TAGAAATGAGGCCCTGTGTT+CGG 0.460245 5_4:-45834260 Msa0853820:CDS
GAATCAAGAAGCATAGATAT+TGG 0.460998 5_4:-45834934 Msa0853820:CDS
ACTTGCTCAGCACTAATAGC+TGG 0.464077 5_4:+45836831 None:intergenic
GAAAGAGATTACAGGGAGGT+TGG 0.466350 5_4:-45838668 Msa0853820:five_prime_UTR
TTTAAATGCAACACAGAAAA+GGG 0.466877 5_4:-45838260 Msa0853820:five_prime_UTR
GCCTCTTGCAGCGAAAGCAT+TGG 0.473093 5_4:-45837906 Msa0853820:five_prime_UTR
AAGATGTTGGAAACATGGTT+TGG 0.474949 5_4:-45837640 Msa0853820:five_prime_UTR
GGTAAATATTGTTAGAAATG+AGG 0.475111 5_4:-45834272 Msa0853820:CDS
GATGAGTTCTCGATCAAGTC+TGG 0.475206 5_4:-45838775 Msa0853820:five_prime_UTR
ACCCGAAGAGAAAGGTATGT+TGG 0.479375 5_4:+45837326 None:intergenic
AAGGATTATCATTACCAAGT+TGG 0.480075 5_4:-45836752 Msa0853820:five_prime_UTR
TTCATGAATTATGTTTGTCA+TGG 0.480408 5_4:-45836881 Msa0853820:five_prime_UTR
CTTGGATGATGATGAATCTC+AGG 0.480985 5_4:-45836601 Msa0853820:five_prime_UTR
TCTGTGTTGCATTTAAATTG+AGG 0.489762 5_4:+45838266 None:intergenic
AAAATATCTTTCATGTACTC+TGG 0.490182 5_4:+45835781 None:intergenic
GTCCTTACCAGAGCAAAATT+GGG 0.490405 5_4:-45836163 Msa0853820:five_prime_UTR
TCACTCAAATCTCAAGTGCT+TGG 0.492571 5_4:-45836790 Msa0853820:five_prime_UTR
TTTATTGCATTTATTCTCAA+AGG 0.493625 5_4:-45839119 Msa0853820:five_prime_UTR
GTCTCTCCGATGATGAATGC+TGG 0.493862 5_4:-45838024 Msa0853820:five_prime_UTR
CATAGAGGGGTTATTGAAAG+TGG 0.493866 5_4:-45836517 Msa0853820:five_prime_UTR
ATCACCTCTTATAGTTTCTG+TGG 0.494481 5_4:+45833970 None:intergenic
TTACTGATTGAGCGAGATCA+TGG 0.494813 5_4:+45837531 None:intergenic
AGGCAAAATTTCTTGTGGTA+AGG 0.494958 5_4:+45837817 None:intergenic
GAGTTGTCGTGTGGATCAAA+AGG 0.498020 5_4:-45838124 Msa0853820:five_prime_UTR
CGGCATTGTTGCTTACCAAA+GGG 0.498485 5_4:-45834240 Msa0853820:CDS
TCTTAAAGACCTCGTCGTAT+GGG 0.499692 5_4:-45836412 Msa0853820:five_prime_UTR
TTTGAAAGCATTCTTATCAA+AGG 0.500798 5_4:+45837415 None:intergenic
ACATTGTTAGTTTAGAGAAA+GGG 0.504774 5_4:-45837022 Msa0853820:five_prime_UTR
TATGGATAATCTGAAATACT+TGG 0.506157 5_4:-45836619 Msa0853820:five_prime_UTR
GAATGAGCGCTGAACCAAGC+TGG 0.506916 5_4:+45839093 None:intergenic
TTTATCCGGATGCCATCACT+AGG 0.509751 5_4:-45837290 Msa0853820:five_prime_UTR
TGTTGGAAACATGGTTTGGA+AGG 0.510148 5_4:-45837636 Msa0853820:five_prime_UTR
ATTCTCAAAGGTCTCCAGCT+TGG 0.510526 5_4:-45839107 Msa0853820:five_prime_UTR
GGTTGAAGATGTTGGAAACA+TGG 0.510717 5_4:-45837645 Msa0853820:five_prime_UTR
TGATCTCGCTCAATCAGTAA+TGG 0.513596 5_4:-45837528 Msa0853820:five_prime_UTR
CGAATTGATTCAGCTTTGGA+TGG 0.515713 5_4:-45837699 Msa0853820:five_prime_UTR
TATCTCTTTATGTAATGAGT+TGG 0.516657 5_4:-45836187 Msa0853820:intron
CTAAGAATAATTATCCAACT+TGG 0.517401 5_4:+45836738 None:intergenic
CTAGAGATTTGGGGTTGTGA+AGG 0.517776 5_4:-45836117 Msa0853820:five_prime_UTR
TGCTGAAGTTCCCCATGAGT+TGG 0.521354 5_4:-45832828 Msa0853820:CDS
GGTTATTGAAAGTGGAAAGA+GGG 0.521462 5_4:-45836509 Msa0853820:five_prime_UTR
ATAAAGTTACCAAACATAGA+GGG 0.523091 5_4:-45836531 Msa0853820:five_prime_UTR
TGAACCACAGAAACTATAAG+AGG 0.523659 5_4:-45833974 Msa0853820:intron
TGGTTCAGTAATAATAGCGC+TGG 0.526927 5_4:+45838552 None:intergenic
GAGGTTGTTGCAACAATCAC+AGG 0.528156 5_4:-45838073 Msa0853820:five_prime_UTR
CCCAATGCTTTCGCTGCAAG+AGG 0.529172 5_4:+45837905 None:intergenic
GTAGAAGCTCAACCAACTCA+TGG 0.529575 5_4:+45832816 None:intergenic
CATCGGAGAGACCAGATAAA+CGG 0.530111 5_4:+45838035 None:intergenic
AGGACGGAACAGTGGAGGAC+TGG 0.530239 5_4:-45835014 Msa0853820:CDS
TTTAGAGAAAGGGAATAGCT+TGG 0.530292 5_4:-45837012 Msa0853820:five_prime_UTR
CTAAAGTTTCGCCATGAGAT+CGG 0.532989 5_4:-45838700 Msa0853820:five_prime_UTR
GGGTTATTGAAAGTGGAAAG+AGG 0.533192 5_4:-45836510 Msa0853820:five_prime_UTR
TAGAAGCTCAACCAACTCAT+GGG 0.534642 5_4:+45832817 None:intergenic
CAACTGAAACAATGTTCTCA+AGG 0.536309 5_4:+45837382 None:intergenic
TCAACATGTGTGTAATACTC+CGG 0.537771 5_4:-45834371 Msa0853820:CDS
TTAGAACATTTATCCTTCTG+AGG 0.538002 5_4:+45835749 None:intergenic
TTTGAACATCCCCTCTGGGA+AGG 0.538226 5_4:+45836305 None:intergenic
AAGTAACTCAACCTCAAAGC+AGG 0.540912 5_4:+45837797 None:intergenic
GAAGTCGGAGTCCTTCGCTT+GGG 0.541566 5_4:+45838477 None:intergenic
CTTGCTCAGCACTAATAGCT+GGG 0.541604 5_4:+45836832 None:intergenic
TGATGAATCTCAGGATGGTA+TGG 0.541660 5_4:-45836592 Msa0853820:five_prime_UTR
ATTAAAGGAACGATGCAAAG+AGG 0.543603 5_4:-45836022 Msa0853820:five_prime_UTR
TTCTTTGGAACCCATTCCGC+AGG 0.544066 5_4:-45835811 Msa0853820:intron
TCGGCATTGTTGCTTACCAA+AGG 0.544468 5_4:-45834241 Msa0853820:CDS
CTTTCCCTAATTAACGGTGA+AGG 0.545214 5_4:-45836336 Msa0853820:five_prime_UTR
ACGAGAATCATAATATGCAT+TGG 0.546316 5_4:+45834300 None:intergenic
AGCTCAAGCGGCTAATCTGA+GGG 0.547173 5_4:-45836916 Msa0853820:five_prime_UTR
AATATGAGTACCTCCAGAGA+TGG 0.548016 5_4:+45836555 None:intergenic
CTCAGGATGGTATGGAGGTG+AGG 0.548467 5_4:-45836584 Msa0853820:five_prime_UTR
TCAACCTGTTACCGATCTCA+TGG 0.550128 5_4:+45838689 None:intergenic
TTTAACAACTATGTAACAAG+TGG 0.550746 5_4:+45834421 None:intergenic
CAGTTTATCTGAAGCTCAAG+CGG 0.552469 5_4:-45836928 Msa0853820:five_prime_UTR
TTGTCCGACACAAACATGGT+TGG 0.556533 5_4:+45834054 None:intergenic
GAGTTGTCTCCCAAAACGCT+TGG 0.557813 5_4:-45837150 Msa0853820:five_prime_UTR
AACATTGTCCGACACAAACA+TGG 0.557828 5_4:+45834050 None:intergenic
GATTCTTTACGCAACTTGCA+AGG 0.558225 5_4:+45839174 None:intergenic
ATATAATCATTGAAGAATGT+TGG 0.559129 5_4:-45837106 Msa0853820:five_prime_UTR
AAAATGGCCGACGCTTTGCT+CGG 0.559799 5_4:-45839006 Msa0853820:five_prime_UTR
CAACATGTGTGTAATACTCC+GGG 0.560361 5_4:-45834370 Msa0853820:CDS
AAAGAGAAACTAACATAACT+AGG 0.560902 5_4:+45834751 None:intergenic
TTGCAACAATCACAGGAACA+TGG 0.562079 5_4:-45838066 Msa0853820:five_prime_UTR
CTTCGAACTCTAGAGATTTG+GGG 0.563445 5_4:-45836126 Msa0853820:five_prime_UTR
GGAAGTCGGAGTCCTTCGCT+TGG 0.563505 5_4:+45838476 None:intergenic
AAGCTCAAGCGGCTAATCTG+AGG 0.564713 5_4:-45836917 Msa0853820:five_prime_UTR
TATCCGGATGCCATCACTAG+GGG 0.565419 5_4:-45837288 Msa0853820:five_prime_UTR
TGGGAGGTTTAATGAGCTCA+AGG 0.565448 5_4:-45837886 Msa0853820:five_prime_UTR
ATATTATGATTCTCGTGTGT+TGG 0.565678 5_4:-45834293 Msa0853820:CDS
TGTGTCCAATAGACATATTG+TGG 0.567616 5_4:-45832889 Msa0853820:intron
TGCGTAAAACCCGAAGAGAA+AGG 0.568512 5_4:+45837318 None:intergenic
GTTTCTTCTCACCCAAGCGA+AGG 0.568840 5_4:-45838488 Msa0853820:five_prime_UTR
TGGATGATATTGCTGAAAGG+AGG 0.571897 5_4:-45838648 Msa0853820:five_prime_UTR
TATCGAAGGCTTAAAAGATG+TGG 0.572812 5_4:-45836952 Msa0853820:five_prime_UTR
ACGACGAGGTCTTTAAGAGA+TGG 0.576167 5_4:+45836417 None:intergenic
AAGGTGCCTACAAGTTTAGT+CGG 0.576541 5_4:+45834884 None:intergenic
GAGCTCAAGGAATGAAGAAG+AGG 0.578163 5_4:-45837873 Msa0853820:five_prime_UTR
TCCCAAATGAAGTAGCTGAA+TGG 0.579751 5_4:-45838582 Msa0853820:five_prime_UTR
AACGATGCAAAGAGGGAACA+GGG 0.580901 5_4:-45836014 Msa0853820:five_prime_UTR
TCAGGATGGTATGGAGGTGA+GGG 0.582271 5_4:-45836583 Msa0853820:five_prime_UTR
CATTTCTGGAATCAAATCAA+AGG 0.582459 5_4:-45838935 Msa0853820:five_prime_UTR
TTATCCGGATGCCATCACTA+GGG 0.585416 5_4:-45837289 Msa0853820:five_prime_UTR
CTTAAAGACCTCGTCGTATG+GGG 0.586329 5_4:-45836411 Msa0853820:five_prime_UTR
TTTAGTATCCACTCGTGATG+AGG 0.587780 5_4:-45838092 Msa0853820:five_prime_UTR
ATATGAGTACCTCCAGAGAT+GGG 0.588121 5_4:+45836556 None:intergenic
CAAGGAATGAAGAAGAGGAA+TGG 0.589213 5_4:-45837868 Msa0853820:five_prime_UTR
CCAAATCTCTAGAGTTCGAA+GGG 0.593102 5_4:+45836128 None:intergenic
GGAACACAAAATTCTAATGA+CGG 0.593462 5_4:+45838324 None:intergenic
GAGATCGTAAAGAAATGCAA+TGG 0.594191 5_4:-45837932 Msa0853820:five_prime_UTR
ACCAAAGACAGAAAATCTGC+AGG 0.595995 5_4:-45834190 Msa0853820:intron
CTAATGGATTTATTGCAAAG+AGG 0.596106 5_4:-45837676 Msa0853820:five_prime_UTR
CAGACCGCTCTATTAAGCTA+TGG 0.598119 5_4:-45838843 Msa0853820:five_prime_UTR
TTAAAGGAACGATGCAAAGA+GGG 0.598894 5_4:-45836021 Msa0853820:five_prime_UTR
AGGTCAATCTCTACCTTCCG+TGG 0.599774 5_4:-45836369 Msa0853820:five_prime_UTR
CCCAAATCTCTAGAGTTCGA+AGG 0.600327 5_4:+45836127 None:intergenic
ATCGAAGGCTTAAAAGATGT+GGG 0.601333 5_4:-45836951 Msa0853820:five_prime_UTR
TCGACACCTCACTTCTCTCG+AGG 0.601656 5_4:-45836070 Msa0853820:five_prime_UTR
GGCAGTTCAAGTTTAATCAG+CGG 0.601683 5_4:-45832539 Msa0853820:CDS
GGTGGAGAGTTGTGTATCGA+AGG 0.602859 5_4:-45836966 Msa0853820:five_prime_UTR
TGAGAAGAGCAATGCAAGGA+CGG 0.603934 5_4:-45835030 Msa0853820:CDS
ATTATTGAACAAATAAAGGA+AGG 0.604449 5_4:-45839211 Msa0853820:five_prime_UTR
TGCAACAATCACAGGAACAT+GGG 0.605310 5_4:-45838065 Msa0853820:five_prime_UTR
GGAATAGATGGAAAGGAAGT+CGG 0.607882 5_4:+45838462 None:intergenic
AAGCTGAGTAAGACCACGGA+AGG 0.608552 5_4:+45836356 None:intergenic
GATGGTAGTTTACCAAGTAA+CGG 0.609201 5_4:+45836666 None:intergenic
CAACAGCCAGCATTCATCAT+CGG 0.609516 5_4:+45838018 None:intergenic
ACAGGTTGAAAGAGATTACA+GGG 0.612024 5_4:-45838675 Msa0853820:five_prime_UTR
CTTGCTTTCAGGAAAAGCAG+TGG 0.613067 5_4:+45834010 None:intergenic
TGTTTGTGTAAGATATGTTG+TGG 0.618019 5_4:-45834091 Msa0853820:intron
GTTATTGAAAGTGGAAAGAG+GGG 0.618752 5_4:-45836508 Msa0853820:five_prime_UTR
AAAGCAGGCAAAATTTCTTG+TGG 0.618893 5_4:+45837812 None:intergenic
CTTGCAGCGAAAGCATTGGG+AGG 0.620397 5_4:-45837902 Msa0853820:five_prime_UTR
TAAGCAACAATGCCGAACAC+AGG 0.621500 5_4:+45834248 None:intergenic
TAAAGTTACCAAACATAGAG+GGG 0.623239 5_4:-45836530 Msa0853820:five_prime_UTR
GTGAGGTGTCGAATACCCTC+CGG 0.623261 5_4:+45836081 None:intergenic
AAGCAACAATGCCGAACACA+GGG 0.625785 5_4:+45834249 None:intergenic
TTGCTCAGCACTAATAGCTG+GGG 0.627398 5_4:+45836833 None:intergenic
GGAATAACATCCTTCCCAGA+GGG 0.628233 5_4:-45836315 Msa0853820:five_prime_UTR
TGCTCAGCACTAATAGCTGG+GGG 0.629689 5_4:+45836834 None:intergenic
GCAATGCAAGGACGGAACAG+TGG 0.633473 5_4:-45835022 Msa0853820:CDS
CACAACTCCGAGCAAAGCGT+CGG 0.633515 5_4:+45838999 None:intergenic
ATCTTGAAAATAAAAGAGTG+TGG 0.638141 5_4:-45837179 Msa0853820:five_prime_UTR
TTACCAGAGCAAAATTGGGA+AGG 0.642714 5_4:-45836159 Msa0853820:five_prime_UTR
AATCCCAACCATGTTTGTGT+CGG 0.642986 5_4:-45834058 Msa0853820:CDS
ATGCAAAGAGGGAACAGGGG+AGG 0.644478 5_4:-45836010 Msa0853820:five_prime_UTR
ATCTCGCTCAATCAGTAATG+GGG 0.648070 5_4:-45837526 Msa0853820:five_prime_UTR
GGGATTGTAACAAAATTGTG+CGG 0.649266 5_4:-45836692 Msa0853820:five_prime_UTR
AGGAATAACATCCTTCCCAG+AGG 0.649798 5_4:-45836316 Msa0853820:five_prime_UTR
TGCAACAACCTCATCACGAG+TGG 0.650227 5_4:+45838084 None:intergenic
TCTTTAAGAGATGGAAGACA+TGG 0.650461 5_4:+45836426 None:intergenic
ATCCGGATGCCATCACTAGG+GGG 0.650703 5_4:-45837287 Msa0853820:five_prime_UTR
AGGATTGCAATGCTTGCCGG+AGG 0.651754 5_4:-45836097 Msa0853820:five_prime_UTR
AGGGTGCAAGAATTATTGCA+AGG 0.654339 5_4:-45838241 Msa0853820:five_prime_UTR
GGTTGGATGATATTGCTGAA+AGG 0.654828 5_4:-45838651 Msa0853820:five_prime_UTR
ACGATGCAAAGAGGGAACAG+GGG 0.655349 5_4:-45836013 Msa0853820:five_prime_UTR
GGATTGCAATGCTTGCCGGA+GGG 0.656092 5_4:-45836096 Msa0853820:five_prime_UTR
ATGCAAGGACGGAACAGTGG+AGG 0.657307 5_4:-45835019 Msa0853820:CDS
CTCATGGCGAAACTTTAGAG+AGG 0.658974 5_4:+45838705 None:intergenic
AACATGAGAAGAGCAATGCA+AGG 0.659891 5_4:-45835034 Msa0853820:CDS
GTACTCTGGATCTCTTCCTG+CGG 0.660205 5_4:+45835795 None:intergenic
ATAAAAGTAGCAAGTCAGCA+AGG 0.661008 5_4:+45839137 None:intergenic
CAAAGATAGAGAAATCCTGA+AGG 0.661644 5_4:-45837723 Msa0853820:five_prime_UTR
GATGTAACAATGAGTTACTG+AGG 0.667220 5_4:-45836389 Msa0853820:five_prime_UTR
ATCCACAACTTAGAAAGACA+AGG 0.670275 5_4:+45836477 None:intergenic
GAGTTACGTGATCTAAACCT+CGG 0.679082 5_4:-45836987 Msa0853820:five_prime_UTR
TCAGAACCTCGAGAGAAGTG+AGG 0.683066 5_4:+45836064 None:intergenic
AAGCACTTGAGATTTGAGTG+AGG 0.687321 5_4:+45836792 None:intergenic
GGGAAAGCTGAGTAAGACCA+CGG 0.692964 5_4:+45836352 None:intergenic
GATGATGATGAATCTCAGGA+TGG 0.696516 5_4:-45836597 Msa0853820:five_prime_UTR
CTTTGTAGTCAAAACCAATG+TGG 0.701824 5_4:+45837447 None:intergenic
GAATAACATCCTTCCCAGAG+GGG 0.705785 5_4:-45836314 Msa0853820:five_prime_UTR
GCTCAAGCGGCTAATCTGAG+GGG 0.707758 5_4:-45836915 Msa0853820:five_prime_UTR
AGAAGCTCAACCAACTCATG+GGG 0.708066 5_4:+45832818 None:intergenic
GCAGCCATAGCTTAATAGAG+CGG 0.711104 5_4:+45838839 None:intergenic
TGAATCTCAGGATGGTATGG+AGG 0.716367 5_4:-45836589 Msa0853820:five_prime_UTR
TTACGTGATCTAAACCTCGG+TGG 0.718994 5_4:-45836984 Msa0853820:five_prime_UTR
TGTTACATCCCCATACGACG+AGG 0.726801 5_4:+45836403 None:intergenic
CGATACACAACTCTCCACCG+AGG 0.768580 5_4:+45836970 None:intergenic
GGTTGAAAGAGATTACAGGG+AGG 0.826032 5_4:-45838672 Msa0853820:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATAAAACAATATATCATT+AGG + chr5_4:45833767-45833786 None:intergenic 10.0%
!!! TTATTCTCATTTTTATAATT+AGG - chr5_4:45835975-45835994 Msa0853820:five_prime_UTR 10.0%
!!! TTATTATCATTTTTATTTAG+AGG - chr5_4:45836007-45836026 Msa0853820:five_prime_UTR 10.0%
!! ATTTAAATTAGAAAGTAATA+TGG + chr5_4:45836201-45836220 None:intergenic 10.0%
!!! AATTTGTTTTCACAAAAAAA+TGG - chr5_4:45830296-45830315 Msa0853820:intron 15.0%
!!! ACAATTTTAATACTAAAGTT+TGG - chr5_4:45830949-45830968 Msa0853820:intron 15.0%
!!! CAATTTTAATACTAAAGTTT+GGG - chr5_4:45830950-45830969 Msa0853820:intron 15.0%
!!! TTTAATTCATTTAAGGTATT+TGG - chr5_4:45832054-45832073 Msa0853820:intron 15.0%
!! AATTTACAAATTACAAAAAC+TGG - chr5_4:45832114-45832133 Msa0853820:intron 15.0%
!!! AACAATTCAAACTTTTTATT+TGG + chr5_4:45833357-45833376 None:intergenic 15.0%
!!! TTTTGATCATTTTATTTCTT+TGG - chr5_4:45834607-45834626 Msa0853820:intron 15.0%
!! ATTAAACTAAGACAATAATA+TGG + chr5_4:45834862-45834881 None:intergenic 15.0%
!!! AAAATTTGTTGATATGTAAT+GGG - chr5_4:45835687-45835706 Msa0853820:intron 15.0%
!!! AATTTTATTACTATGTATTG+TGG + chr5_4:45835929-45835948 None:intergenic 15.0%
!! TAATTTAAATTTCTATATGC+AGG - chr5_4:45836211-45836230 Msa0853820:intron 15.0%
!! ATTAAACTAAGACAAAAATA+TGG + chr5_4:45837399-45837418 None:intergenic 15.0%
!! CACAATTATTGAACAAATAA+AGG - chr5_4:45830103-45830122 Msa0853820:CDS 20.0%
!! ATTATTGAACAAATAAAGGA+AGG - chr5_4:45830107-45830126 Msa0853820:CDS 20.0%
!! TTTATTGCATTTATTCTCAA+AGG - chr5_4:45830199-45830218 Msa0853820:CDS 20.0%
!! TTCTGTGATAAATTCTATAA+TGG + chr5_4:45831018-45831037 None:intergenic 20.0%
!!! AAAAGAGAAACATTGTTTTA+GGG + chr5_4:45831561-45831580 None:intergenic 20.0%
!!! AAAAAGAGAAACATTGTTTT+AGG + chr5_4:45831562-45831581 None:intergenic 20.0%
!!! TGTCTTGAAAAAATGATTTT+TGG + chr5_4:45831715-45831734 None:intergenic 20.0%
!!! TGTAATTTGTAAATTGAGTT+AGG + chr5_4:45832109-45832128 None:intergenic 20.0%
!! ATATAATCATTGAAGAATGT+TGG - chr5_4:45832212-45832231 Msa0853820:intron 20.0%
!! TTGGAAATAAATTACTATGA+AGG - chr5_4:45832547-45832566 Msa0853820:CDS 20.0%
!!! ATTTAATTTCTCTTGAACTT+TGG - chr5_4:45832605-45832624 Msa0853820:intron 20.0%
!!! TTTAATTTCTCTTGAACTTT+GGG - chr5_4:45832606-45832625 Msa0853820:intron 20.0%
!! AAAACTGGAATTATTAAGTA+TGG - chr5_4:45832681-45832700 Msa0853820:intron 20.0%
!!! TTCATTTTTATTGACTTCTT+TGG - chr5_4:45833492-45833511 Msa0853820:intron 20.0%
!!! TACGTTAATTTGAATATTGT+GGG - chr5_4:45833952-45833971 Msa0853820:intron 20.0%
!!! ATGTTTTCAATGTTTTTCAA+AGG - chr5_4:45834243-45834262 Msa0853820:CDS 20.0%
!! TCAATACCACAAATAAAAAA+GGG + chr5_4:45834714-45834733 None:intergenic 20.0%
!! TTCAATACCACAAATAAAAA+AGG + chr5_4:45834715-45834734 None:intergenic 20.0%
!! CATTATGAATTTATCATCAA+AGG - chr5_4:45834756-45834775 Msa0853820:CDS 20.0%
!!! CACTTTGTTATCAAATTAAA+TGG + chr5_4:45835403-45835422 None:intergenic 20.0%
!!! CATTACATATCAACAAATTT+TGG + chr5_4:45835688-45835707 None:intergenic 20.0%
!!! CAAAATTTGTTGATATGTAA+TGG - chr5_4:45835686-45835705 Msa0853820:intron 20.0%
!! GTAAAATTATTGTGAGAATT+GGG - chr5_4:45836274-45836293 Msa0853820:five_prime_UTR 20.0%
!! ATATATTCATGAAAATATGC+AGG - chr5_4:45836718-45836737 Msa0853820:five_prime_UTR 20.0%
!!! TTTCAAGTAAGAAATGTTTA+TGG - chr5_4:45836749-45836768 Msa0853820:five_prime_UTR 20.0%
!!! AAAGGAAGTATAAATTGATA+TGG - chr5_4:45837602-45837621 Msa0853820:five_prime_UTR 20.0%
!! TAGTAGATATTGTAAAATCA+AGG + chr5_4:45837748-45837767 None:intergenic 20.0%
!!! ATTTTTACCAGATAATTGAT+GGG + chr5_4:45838453-45838472 None:intergenic 20.0%
!!! AATTTTTACCAGATAATTGA+TGG + chr5_4:45838454-45838473 None:intergenic 20.0%
!! AAGAAACAAAATCTAAAGAA+TGG + chr5_4:45839039-45839058 None:intergenic 20.0%
!! GAAAAATTTATATGCTAACA+AGG + chr5_4:45839203-45839222 None:intergenic 20.0%
!!! ATAAAGGAAGGTATCAATAA+TGG - chr5_4:45830119-45830138 Msa0853820:CDS 25.0%
!!! CGTAAAGAATCTACTTTTAA+TGG - chr5_4:45830156-45830175 Msa0853820:CDS 25.0%
! ATTTAAATGCAACACAGAAA+AGG - chr5_4:45831057-45831076 Msa0853820:intron 25.0%
! TTTAAATGCAACACAGAAAA+GGG - chr5_4:45831058-45831077 Msa0853820:intron 25.0%
!!! TAAAAGATACTTGCTAGTTT+TGG - chr5_4:45831100-45831119 Msa0853820:intron 25.0%
! AAAAATGAACAATTGGAATC+TGG - chr5_4:45831137-45831156 Msa0853820:intron 25.0%
! AAAATGAACAATTGGAATCT+GGG - chr5_4:45831138-45831157 Msa0853820:intron 25.0%
! TTGTTCAAACAATATGCATT+TGG - chr5_4:45831320-45831339 Msa0853820:intron 25.0%
! AGTACAAAGCTTGTAAAAAT+AGG - chr5_4:45831359-45831378 Msa0853820:intron 25.0%
! AAAGCTTGTAAAAATAGGAA+AGG - chr5_4:45831364-45831383 Msa0853820:intron 25.0%
! AAATTAAAGATAGTGAGCTT+TGG - chr5_4:45831477-45831496 Msa0853820:intron 25.0%
! AATTAAAGATAGTGAGCTTT+GGG - chr5_4:45831478-45831497 Msa0853820:intron 25.0%
!!! ATTTTTTCAAGACAGCAAAA+TGG - chr5_4:45831721-45831740 Msa0853820:intron 25.0%
!!! TTTGAAAGCATTCTTATCAA+AGG + chr5_4:45831906-45831925 None:intergenic 25.0%
! ATCTTGAAAATAAAAGAGTG+TGG - chr5_4:45832139-45832158 Msa0853820:intron 25.0%
!! CAAGTTAATTTTCCAATGTT+AGG + chr5_4:45832256-45832275 None:intergenic 25.0%
!! TACATTGTTAGTTTAGAGAA+AGG - chr5_4:45832295-45832314 Msa0853820:intron 25.0%
!! ACATTGTTAGTTTAGAGAAA+GGG - chr5_4:45832296-45832315 Msa0853820:intron 25.0%
! TTCATGAATTATGTTTGTCA+TGG - chr5_4:45832437-45832456 Msa0853820:intron 25.0%
! CTAAGAATAATTATCCAACT+TGG + chr5_4:45832583-45832602 None:intergenic 25.0%
!!! AATTCCAGTTTTTTTAGAGA+TGG + chr5_4:45832673-45832692 None:intergenic 25.0%
!! TATGGATAATCTGAAATACT+TGG - chr5_4:45832699-45832718 Msa0853820:intron 25.0%
! AATAAAGTTACCAAACATAG+AGG - chr5_4:45832786-45832805 Msa0853820:CDS 25.0%
! ATAAAGTTACCAAACATAGA+GGG - chr5_4:45832787-45832806 Msa0853820:CDS 25.0%
! CTATAATTTCACAAAACTGA+AGG - chr5_4:45833065-45833084 Msa0853820:intron 25.0%
! TATCTCTTTATGTAATGAGT+TGG - chr5_4:45833131-45833150 Msa0853820:intron 25.0%
!!! AGTAAAATTGATTTTTGCGA+TGG + chr5_4:45833419-45833438 None:intergenic 25.0%
!! ATCGCAAAAATCAATTTTAC+TGG - chr5_4:45833418-45833437 Msa0853820:intron 25.0%
! TGAAATCCAAACATAAGAAT+GGG + chr5_4:45833458-45833477 None:intergenic 25.0%
! TTGAAATCCAAACATAAGAA+TGG + chr5_4:45833459-45833478 None:intergenic 25.0%
! AAAATATCTTTCATGTACTC+TGG + chr5_4:45833540-45833559 None:intergenic 25.0%
! AAGGATAAATGTTCTAATTC+AGG - chr5_4:45833575-45833594 Msa0853820:intron 25.0%
!!! TTTGTAATTTGCTGATTTTG+TGG - chr5_4:45833660-45833679 Msa0853820:intron 25.0%
! TTGAATGTAACTATATGAGT+TGG - chr5_4:45833873-45833892 Msa0853820:intron 25.0%
!! CTACGTTAATTTGAATATTG+TGG - chr5_4:45833951-45833970 Msa0853820:intron 25.0%
! CGATTTAGTTAAAATTCAGA+TGG - chr5_4:45834061-45834080 Msa0853820:CDS 25.0%
!!! AGATGGTTTGTTCTAAAATT+TGG - chr5_4:45834078-45834097 Msa0853820:CDS 25.0%
!!! GTTTGTTCTAAAATTTGGTT+TGG - chr5_4:45834083-45834102 Msa0853820:intron 25.0%
!! ATCATTGATCTTGTTTCAAT+AGG + chr5_4:45834148-45834167 None:intergenic 25.0%
!! TAGAATTCAATGTTTTCCAA+AGG - chr5_4:45834174-45834193 Msa0853820:intron 25.0%
! TGAAAACATTGAATTCTATC+AGG + chr5_4:45834232-45834251 None:intergenic 25.0%
! AAAGAGAAACTAACATAACT+AGG + chr5_4:45834570-45834589 None:intergenic 25.0%
!! TAGTTATGTTAGTTTCTCTT+TGG - chr5_4:45834569-45834588 Msa0853820:intron 25.0%
!!! CATTTTATTTCTTTGGTCTT+TGG - chr5_4:45834614-45834633 Msa0853820:intron 25.0%
! ACAGTCAAAAGAAATAAAGA+TGG + chr5_4:45834658-45834677 None:intergenic 25.0%
!!! GAATATCCCTTTTTTATTTG+TGG - chr5_4:45834705-45834724 Msa0853820:intron 25.0%
! TTTAACAACTATGTAACAAG+TGG + chr5_4:45834900-45834919 None:intergenic 25.0%
! GGTAAATATTGTTAGAAATG+AGG - chr5_4:45835046-45835065 Msa0853820:exon 25.0%
!! CTTGAGTTTTTGAATATTTG+TGG - chr5_4:45835598-45835617 Msa0853820:intron 25.0%
! CAATACAAGAATGATATTAG+AGG - chr5_4:45835902-45835921 Msa0853820:intron 25.0%
! GGTAAAATTATTGTGAGAAT+TGG - chr5_4:45836273-45836292 Msa0853820:five_prime_UTR 25.0%
! ATGCAACAAATCAAAATTCT+TGG - chr5_4:45836329-45836348 Msa0853820:five_prime_UTR 25.0%
!!! AAGCTGAATATTTTGAGATA+TGG + chr5_4:45836597-45836616 None:intergenic 25.0%
! ATATTATAGGAACTGAAGAA+TGG + chr5_4:45836664-45836683 None:intergenic 25.0%
!! GATGTTGTTAAGCATATTTT+AGG - chr5_4:45836825-45836844 Msa0853820:five_prime_UTR 25.0%
! TATTCATTGTCCAACAATAA+AGG - chr5_4:45836924-45836943 Msa0853820:five_prime_UTR 25.0%
! TAACAAGATATCTCATATTC+TGG - chr5_4:45836978-45836997 Msa0853820:five_prime_UTR 25.0%
! AATTACGCATTATTTGATGT+TGG - chr5_4:45837001-45837020 Msa0853820:five_prime_UTR 25.0%
! ACAGTCAAAAGAAATAAAGA+TGG + chr5_4:45834658-45834677 None:intergenic 25.0%
!! AACATGCAATTATAGTTTTC+AGG + chr5_4:45837269-45837288 None:intergenic 25.0%
! TTTAACAACTATGTAACAAG+TGG + chr5_4:45834900-45834919 None:intergenic 25.0%
! GAAGTATAAATTGATATGGT+TGG - chr5_4:45837606-45837625 Msa0853820:five_prime_UTR 25.0%
! AACAAAAAAACTACACTAGA+GGG + chr5_4:45837826-45837845 None:intergenic 25.0%
! AAACTAGACCTATTCATATT+AGG + chr5_4:45838034-45838053 None:intergenic 25.0%
! ATGTTAGTATATATCCCTTT+GGG + chr5_4:45838131-45838150 None:intergenic 25.0%
! TATGTTAGTATATATCCCTT+TGG + chr5_4:45838132-45838151 None:intergenic 25.0%
! AAAGGGATATATACTAACAT+AGG - chr5_4:45838131-45838150 Msa0853820:five_prime_UTR 25.0%
! GAAAGAAAAAAAAAGAGAGA+GGG + chr5_4:45838205-45838224 None:intergenic 25.0%
! AGAAAGAAAAAAAAAGAGAG+AGG + chr5_4:45838206-45838225 None:intergenic 25.0%
!!! TTTTTAGTTCAAAAGAAGGT+TGG + chr5_4:45838253-45838272 None:intergenic 25.0%
!!! TCACTTTTTAGTTCAAAAGA+AGG + chr5_4:45838257-45838276 None:intergenic 25.0%
!! TATTTTTCCCATCAATTATC+TGG - chr5_4:45838443-45838462 Msa0853820:five_prime_UTR 25.0%
! TTATTGTGGAATCTCAAATT+TGG + chr5_4:45838489-45838508 None:intergenic 25.0%
!! AATTTGAGATTCCACAATAA+CGG - chr5_4:45838489-45838508 Msa0853820:five_prime_UTR 25.0%
!!! TTGGTAGTTTCTTCAATTTT+GGG + chr5_4:45838590-45838609 None:intergenic 25.0%
!!! TTTGGTAGTTTCTTCAATTT+TGG + chr5_4:45838591-45838610 None:intergenic 25.0%
!! ACTATTGATATTGGTTATTG+TGG - chr5_4:45838711-45838730 Msa0853820:five_prime_UTR 25.0%
!! ATTCAATCAACATGCAATTT+TGG + chr5_4:45838872-45838891 None:intergenic 25.0%
! CAAAATCTAAAGAATGGTTA+TGG + chr5_4:45839033-45839052 None:intergenic 25.0%
!!! ACATGTTCTGATTTTTCAAT+GGG - chr5_4:45839133-45839152 Msa0853820:five_prime_UTR 25.0%
AATGAATTTGCAACCATTTC+TGG - chr5_4:45830369-45830388 Msa0853820:intron 30.0%
!! CTTTGATTTGATTCCAGAAA+TGG + chr5_4:45830385-45830404 None:intergenic 30.0%
!! CATTTCTGGAATCAAATCAA+AGG - chr5_4:45830383-45830402 Msa0853820:intron 30.0%
! CTCAGCAATATCTTTGAAAA+AGG + chr5_4:45830586-45830605 None:intergenic 30.0%
!!! AAGAAGTTTTTTCTACAGGA+GGG - chr5_4:45830693-45830712 Msa0853820:intron 30.0%
!! ATTACTGAACCAAAAGTGTT+TGG - chr5_4:45830777-45830796 Msa0853820:intron 30.0%
!! TTTCCATCTATTCCGTTTTT+GGG - chr5_4:45830865-45830884 Msa0853820:intron 30.0%
GGAACACAAAATTCTAATGA+CGG + chr5_4:45830997-45831016 None:intergenic 30.0%
TCTGTGTTGCATTTAAATTG+AGG + chr5_4:45831055-45831074 None:intergenic 30.0%
GTGGAAGAAAAATGAACAAT+TGG - chr5_4:45831130-45831149 Msa0853820:intron 30.0%
TTCAGGATTTCTCTATCTTT+GGG + chr5_4:45831596-45831615 None:intergenic 30.0%
!! CTAATGGATTTATTGCAAAG+AGG - chr5_4:45831642-45831661 Msa0853820:intron 30.0%
TATTGCAAAGAGGAATTTAG+AGG - chr5_4:45831652-45831671 Msa0853820:intron 30.0%
AATTTAGAGGTTGAAGATGT+TGG - chr5_4:45831665-45831684 Msa0853820:intron 30.0%
AGCAAAATGGATGAATATTC+TGG - chr5_4:45831734-45831753 Msa0853820:intron 30.0%
TAGGGGGTTTAATTCATTTA+AGG - chr5_4:45832047-45832066 Msa0853820:intron 30.0%
TTCCAATGTTAGGAAACATT+CGG + chr5_4:45832246-45832265 None:intergenic 30.0%
AAGGATTATCATTACCAAGT+TGG - chr5_4:45832566-45832585 Msa0853820:CDS 30.0%
! ACTACCATCTCTAAAAAAAC+TGG - chr5_4:45832666-45832685 Msa0853820:intron 30.0%
TAAAGTTACCAAACATAGAG+GGG - chr5_4:45832788-45832807 Msa0853820:CDS 30.0%
TATTCCTTCACCGTTAATTA+GGG + chr5_4:45832989-45833008 None:intergenic 30.0%
TTATTCCTTCACCGTTAATT+AGG + chr5_4:45832990-45833009 None:intergenic 30.0%
CTATTTCCCATTCTTATGTT+TGG - chr5_4:45833449-45833468 Msa0853820:intron 30.0%
TTAGAACATTTATCCTTCTG+AGG + chr5_4:45833572-45833591 None:intergenic 30.0%
TTTGTGGAGATTGAATTGAA+TGG - chr5_4:45833676-45833695 Msa0853820:intron 30.0%
CTGATGTTTAGATACTGATA+TGG + chr5_4:45833901-45833920 None:intergenic 30.0%
GGAAAACATTGAATTCTATC+AGG + chr5_4:45834172-45834191 None:intergenic 30.0%
! CCATTGCTTCTATTCTAAAA+GGG + chr5_4:45834207-45834226 None:intergenic 30.0%
ACCATTGCTTCTATTCTAAA+AGG + chr5_4:45834208-45834227 None:intergenic 30.0%
! ATATTCCGAACTTACACTTT+TGG - chr5_4:45834340-45834359 Msa0853820:CDS 30.0%
! GTGATGCTTTTATGTTCTAT+AGG - chr5_4:45834362-45834381 Msa0853820:CDS 30.0%
! GAATCAAGAAGCATAGATAT+TGG - chr5_4:45834384-45834403 Msa0853820:CDS 30.0%
AAACACAAACGAAAGAAAGA+TGG + chr5_4:45834469-45834488 None:intergenic 30.0%
GTCAAAAGAAATAAAGATGG+AGG + chr5_4:45834655-45834674 None:intergenic 30.0%
! TTAGTTTAATTTCTCTGTGC+AGG - chr5_4:45834872-45834891 Msa0853820:intron 30.0%
!! TTAAAACGTCTTTTGAGTGA+GGG - chr5_4:45834915-45834934 Msa0853820:CDS 30.0%
TATTACACACATGTTGATCT+TGG + chr5_4:45834944-45834963 None:intergenic 30.0%
! ATGTCGATGATAATTTTACC+CGG + chr5_4:45834969-45834988 None:intergenic 30.0%
ACGAGAATCATAATATGCAT+TGG + chr5_4:45835021-45835040 None:intergenic 30.0%
ATATTATGATTCTCGTGTGT+TGG - chr5_4:45835025-45835044 Msa0853820:CDS 30.0%
TGTGTATACAGCTCTTTATT+AGG - chr5_4:45835151-45835170 Msa0853820:intron 30.0%
TATACAGCTCTTTATTAGGA+AGG - chr5_4:45835155-45835174 Msa0853820:intron 30.0%
TGTTTGTGTAAGATATGTTG+TGG - chr5_4:45835227-45835246 Msa0853820:intron 30.0%
! ACTTATTTCTCTTCGAACTA+TGG - chr5_4:45835516-45835535 Msa0853820:intron 30.0%
TATGGATATTGTTGAATCTG+AGG - chr5_4:45835534-45835553 Msa0853820:intron 30.0%
!! CTAGAATTTTGACAGTTAGA+TGG - chr5_4:45835729-45835748 Msa0853820:intron 30.0%
! GGTTTTCAATATTTTGTGCA+AGG - chr5_4:45835750-45835769 Msa0853820:five_prime_UTR 30.0%
! TTTCAATATTTTGTGCAAGG+TGG - chr5_4:45835753-45835772 Msa0853820:five_prime_UTR 30.0%
! TTCAATATTTTGTGCAAGGT+GGG - chr5_4:45835754-45835773 Msa0853820:five_prime_UTR 30.0%
TTCGAAGATACAATTCATAG+AGG + chr5_4:45836079-45836098 None:intergenic 30.0%
ATGTTCCACAATATGTCTAT+TGG + chr5_4:45836437-45836456 None:intergenic 30.0%
TAGACATATTGTGGAACATA+TGG - chr5_4:45836438-45836457 Msa0853820:five_prime_UTR 30.0%
! TCAAAATATTCAGCTTTTCG+TGG - chr5_4:45836601-45836620 Msa0853820:five_prime_UTR 30.0%
AGAAATGTTTATGGAAGAGT+TGG - chr5_4:45836758-45836777 Msa0853820:five_prime_UTR 30.0%
TTTCAGCTTCTAATTTCAAC+AGG - chr5_4:45837026-45837045 Msa0853820:five_prime_UTR 30.0%
GTCAAAAGAAATAAAGATGG+AGG + chr5_4:45834655-45834674 None:intergenic 30.0%
TACAGTGTATAACAATCTCT+TGG - chr5_4:45837111-45837130 Msa0853820:five_prime_UTR 30.0%
! GTTTCTCTTTTGTCTTGAAT+AGG - chr5_4:45837196-45837215 Msa0853820:five_prime_UTR 30.0%
TTGTCTTGAATAGGTAAGTT+TGG - chr5_4:45837205-45837224 Msa0853820:five_prime_UTR 30.0%
! TTAGTTTAATTTCTGTGTGC+AGG - chr5_4:45837409-45837428 Msa0853820:five_prime_UTR 30.0%
!! GTTAAAACATCTTTTGAGTG+AGG - chr5_4:45837451-45837470 Msa0853820:five_prime_UTR 30.0%
AAGGGACTATTTCATAATGA+AGG + chr5_4:45837484-45837503 None:intergenic 30.0%
CTGTATGTTTCATACATGAA+GGG + chr5_4:45837502-45837521 None:intergenic 30.0%
!! TCTTTGGAGATTGATTTTAC+AGG + chr5_4:45837548-45837567 None:intergenic 30.0%
GTAAAATCAATCTCCAAAGA+AGG - chr5_4:45837548-45837567 Msa0853820:five_prime_UTR 30.0%
ATTAGTCCATCAAATGAGAA+AGG - chr5_4:45837584-45837603 Msa0853820:five_prime_UTR 30.0%
ATACTTCCTTTCTCATTTGA+TGG + chr5_4:45837593-45837612 None:intergenic 30.0%
TTGTTAGTTGGAAGTAACTT+TGG + chr5_4:45837675-45837694 None:intergenic 30.0%
TTTCAACATCTGTTGTTAGT+TGG + chr5_4:45837687-45837706 None:intergenic 30.0%
CAACAAAAAAACTACACTAG+AGG + chr5_4:45837827-45837846 None:intergenic 30.0%
!!! CTCTAGTGTAGTTTTTTTGT+TGG - chr5_4:45837825-45837844 Msa0853820:five_prime_UTR 30.0%
!! CTCATACAATGTTCTTGTTT+TGG - chr5_4:45837922-45837941 Msa0853820:five_prime_UTR 30.0%
! TGTCACTTCCTAATATGAAT+AGG - chr5_4:45838023-45838042 Msa0853820:five_prime_UTR 30.0%
TAAGAACAGTGAAATTAGAG+AGG + chr5_4:45838082-45838101 None:intergenic 30.0%
TCTCTAATTTCACTGTTCTT+AGG - chr5_4:45838081-45838100 Msa0853820:five_prime_UTR 30.0%
CTCAATCAGTTTAGATATCA+TGG + chr5_4:45838309-45838328 None:intergenic 30.0%
AAAATTCAGCAATACTCAAC+AGG + chr5_4:45838347-45838366 None:intergenic 30.0%
TCTCTTCGAACTATTGATAT+TGG - chr5_4:45838702-45838721 Msa0853820:five_prime_UTR 30.0%
!! CTTGAGTTTTTGAAAATTCG+AGG - chr5_4:45838777-45838796 Msa0853820:five_prime_UTR 30.0%
GTGATAGAAATGTGGTAAAT+GGG + chr5_4:45838988-45839007 None:intergenic 30.0%
TGTGATAGAAATGTGGTAAA+TGG + chr5_4:45838989-45839008 None:intergenic 30.0%
AATCTAAAGAATGGTTATGG+TGG + chr5_4:45839030-45839049 None:intergenic 30.0%
!! CACATGTTCTGATTTTTCAA+TGG - chr5_4:45839132-45839151 Msa0853820:five_prime_UTR 30.0%
! TTTTCAATGGGAGAGAAAAA+CGG - chr5_4:45839145-45839164 Msa0853820:five_prime_UTR 30.0%
! TATGCTAACAAGGCATTATA+AGG + chr5_4:45839193-45839212 None:intergenic 30.0%
ATAAAAGTAGCAAGTCAGCA+AGG + chr5_4:45830184-45830203 None:intergenic 35.0%
! TGGTTGCAAATTCATTTTGC+AGG + chr5_4:45830365-45830384 None:intergenic 35.0%
AACGACTTTGATCACATCTA+AGG + chr5_4:45830427-45830446 None:intergenic 35.0%
! AACAGGTTGAAAGAGATTAC+AGG - chr5_4:45830642-45830661 Msa0853820:intron 35.0%
! ACAGGTTGAAAGAGATTACA+GGG - chr5_4:45830643-45830662 Msa0853820:intron 35.0%
!!! GAGGAAGAAGTTTTTTCTAC+AGG - chr5_4:45830689-45830708 Msa0853820:intron 35.0%
!!! GAAGAAGTTTTTTCTACAGG+AGG - chr5_4:45830692-45830711 Msa0853820:intron 35.0%
CAAAAACGGAATAGATGGAA+AGG + chr5_4:45830866-45830885 None:intergenic 35.0%
! CTTTCCATCTATTCCGTTTT+TGG - chr5_4:45830864-45830883 Msa0853820:intron 35.0%
TAACCCAAAAACGGAATAGA+TGG + chr5_4:45830871-45830890 None:intergenic 35.0%
!!! ATCTATTCCGTTTTTGGGTT+AGG - chr5_4:45830870-45830889 Msa0853820:intron 35.0%
TTGAAAAATGAGTTGTCGTG+TGG - chr5_4:45831185-45831204 Msa0853820:intron 35.0%
ATCACGAGTGGATACTAAAA+TGG + chr5_4:45831225-45831244 None:intergenic 35.0%
GAGATCGTAAAGAAATGCAA+TGG - chr5_4:45831386-45831405 Msa0853820:intron 35.0%
AGGCAAAATTTCTTGTGGTA+AGG + chr5_4:45831504-45831523 None:intergenic 35.0%
AAAGCAGGCAAAATTTCTTG+TGG + chr5_4:45831509-45831528 None:intergenic 35.0%
! AAGAAATTTTGCCTGCTTTG+AGG - chr5_4:45831510-45831529 Msa0853820:intron 35.0%
!!! GAGAAACATTGTTTTAGGGT+TGG + chr5_4:45831557-45831576 None:intergenic 35.0%
CTTCAGGATTTCTCTATCTT+TGG + chr5_4:45831597-45831616 None:intergenic 35.0%
CAAAGATAGAGAAATCCTGA+AGG - chr5_4:45831595-45831614 Msa0853820:intron 35.0%
AAGATGTTGGAAACATGGTT+TGG - chr5_4:45831678-45831697 Msa0853820:intron 35.0%
!! GTGTGTGCTTTTTGACAAAT+TGG + chr5_4:45831852-45831871 None:intergenic 35.0%
CTTTGTAGTCAAAACCAATG+TGG + chr5_4:45831874-45831893 None:intergenic 35.0%
CAACTGAAACAATGTTCTCA+AGG + chr5_4:45831939-45831958 None:intergenic 35.0%
! GGGAAGTTATCATGTTTTTC+TGG + chr5_4:45831974-45831993 None:intergenic 35.0%
! TTTTACGCACATCCTTTATC+CGG - chr5_4:45832014-45832033 Msa0853820:intron 35.0%
TCCAATGTTAGGAAACATTC+GGG + chr5_4:45832245-45832264 None:intergenic 35.0%
TTTAGAGAAAGGGAATAGCT+TGG - chr5_4:45832306-45832325 Msa0853820:intron 35.0%
TATCGAAGGCTTAAAAGATG+TGG - chr5_4:45832366-45832385 Msa0853820:intron 35.0%
ATCGAAGGCTTAAAAGATGT+GGG - chr5_4:45832367-45832386 Msa0853820:intron 35.0%
GGGATTGTAACAAAATTGTG+CGG - chr5_4:45832626-45832645 Msa0853820:intron 35.0%
GATGGTAGTTTACCAAGTAA+CGG + chr5_4:45832655-45832674 None:intergenic 35.0%
TTCAATAACCCCTCTATGTT+TGG + chr5_4:45832799-45832818 None:intergenic 35.0%
GGTTATTGAAAGTGGAAAGA+GGG - chr5_4:45832809-45832828 Msa0853820:CDS 35.0%
GTTATTGAAAGTGGAAAGAG+GGG - chr5_4:45832810-45832829 Msa0853820:CDS 35.0%
TTCCTTGTCTTTCTAAGTTG+TGG - chr5_4:45832839-45832858 Msa0853820:CDS 35.0%
ATCCACAACTTAGAAAGACA+AGG + chr5_4:45832844-45832863 None:intergenic 35.0%
! TCTTTAAGAGATGGAAGACA+TGG + chr5_4:45832895-45832914 None:intergenic 35.0%
GATGTAACAATGAGTTACTG+AGG - chr5_4:45832929-45832948 Msa0853820:intron 35.0%
ACTCAGCTTTCCCTAATTAA+CGG - chr5_4:45832976-45832995 Msa0853820:intron 35.0%
ACAGAGATTGAAGAGAAGTA+AGG + chr5_4:45833041-45833060 None:intergenic 35.0%
TGCATCGTTCCTTTAATGTT+GGG + chr5_4:45833293-45833312 None:intergenic 35.0%
TTGCATCGTTCCTTTAATGT+TGG + chr5_4:45833294-45833313 None:intergenic 35.0%
ATTAAAGGAACGATGCAAAG+AGG - chr5_4:45833296-45833315 Msa0853820:intron 35.0%
TTAAAGGAACGATGCAAAGA+GGG - chr5_4:45833297-45833316 Msa0853820:intron 35.0%
! TTTTACTGTTCAACCTCAGA+AGG - chr5_4:45833556-45833575 Msa0853820:intron 35.0%
GGAGATTGAATTGAATGGTT+AGG - chr5_4:45833681-45833700 Msa0853820:intron 35.0%
CTAAAAGGGACATAAACCTT+TGG + chr5_4:45834193-45834212 None:intergenic 35.0%
!!! CCCTTTTAGAATAGAAGCAA+TGG - chr5_4:45834204-45834223 Msa0853820:CDS 35.0%
!!! TGCTCTTCTCATGTTTTAGT+TGG + chr5_4:45834279-45834298 None:intergenic 35.0%
! CATCACCAAAAGTGTAAGTT+CGG + chr5_4:45834348-45834367 None:intergenic 35.0%
ACATTTCCGACTAAACTTGT+AGG - chr5_4:45834428-45834447 Msa0853820:intron 35.0%
ACAAACGAAAGAAAGATGGA+GGG + chr5_4:45834465-45834484 None:intergenic 35.0%
AGTGTCAAATCCTGCAAAAA+CGG + chr5_4:45834526-45834545 None:intergenic 35.0%
!!! ACACTCCTGTTTTTTCACTA+TGG - chr5_4:45834541-45834560 Msa0853820:intron 35.0%
! GTTTCTCTTTGGTCTTTCAT+AGG - chr5_4:45834580-45834599 Msa0853820:intron 35.0%
! TTTCTTTGGTCTTTGGTCTT+TGG - chr5_4:45834621-45834640 Msa0853820:intron 35.0%
!! GTTAAAACGTCTTTTGAGTG+AGG - chr5_4:45834914-45834933 Msa0853820:CDS 35.0%
TCAACATGTGTGTAATACTC+CGG - chr5_4:45834947-45834966 Msa0853820:CDS 35.0%
TGAACCACAGAAACTATAAG+AGG - chr5_4:45835344-45835363 Msa0853820:intron 35.0%
ATCACCTCTTATAGTTTCTG+TGG + chr5_4:45835351-45835370 None:intergenic 35.0%
ACTATAAGAGGTGATGATCT+TGG - chr5_4:45835356-45835375 Msa0853820:intron 35.0%
GCATTAGTCATATCACTTAC+AGG - chr5_4:45835462-45835481 Msa0853820:intron 35.0%
GTTTCAAATACCTTATGGCA+GGG + chr5_4:45835569-45835588 None:intergenic 35.0%
GTGAGGTTTCAAATACCTTA+TGG + chr5_4:45835574-45835593 None:intergenic 35.0%
TCAAAAACTCAAGTGAAGTG+AGG + chr5_4:45835591-45835610 None:intergenic 35.0%
CCTTACACTCCTTTGAATTT+GGG + chr5_4:45835627-45835646 None:intergenic 35.0%
TCCTTACACTCCTTTGAATT+TGG + chr5_4:45835628-45835647 None:intergenic 35.0%
! AAGGAGTGTAAGGAAATAAC+AGG - chr5_4:45835634-45835653 Msa0853820:intron 35.0%
AGGAAATAACAGGAGAAGAA+TGG - chr5_4:45835644-45835663 Msa0853820:intron 35.0%
GGAAATAACAGGAGAAGAAT+GGG - chr5_4:45835645-45835664 Msa0853820:intron 35.0%
GTAATCTCAAGACAGTTATC+TGG - chr5_4:45836129-45836148 Msa0853820:five_prime_UTR 35.0%
TATGGTGATAAGAAGATGCA+GGG + chr5_4:45836183-45836202 None:intergenic 35.0%
ATATGGTGATAAGAAGATGC+AGG + chr5_4:45836184-45836203 None:intergenic 35.0%
! TTGCTTTCTCAGTTTTTGTG+TGG - chr5_4:45836240-45836259 Msa0853820:intron 35.0%
! GTTTTTGTGTGGAATGTCTA+CGG - chr5_4:45836251-45836270 Msa0853820:intron 35.0%
! TTTTTGTGTGGAATGTCTAC+GGG - chr5_4:45836252-45836271 Msa0853820:intron 35.0%
! CAGCGTCAATTCTAAAGATA+TGG + chr5_4:45836300-45836319 None:intergenic 35.0%
TGTGTATACAGCTCTTCATT+AGG - chr5_4:45836370-45836389 Msa0853820:five_prime_UTR 35.0%
TATACAGCTCTTCATTAGGA+AGG - chr5_4:45836374-45836393 Msa0853820:five_prime_UTR 35.0%
TGTGTCCAATAGACATATTG+TGG - chr5_4:45836429-45836448 Msa0853820:five_prime_UTR 35.0%
AAACTTCAACCTGCTATGTT+TGG - chr5_4:45836554-45836573 Msa0853820:five_prime_UTR 35.0%
! GAACTTTTACCAAACATAGC+AGG + chr5_4:45836566-45836585 None:intergenic 35.0%
CCTTTACGTGATCATACATT+TGG + chr5_4:45836632-45836651 None:intergenic 35.0%
CCAAATGTATGATCACGTAA+AGG - chr5_4:45836629-45836648 Msa0853820:five_prime_UTR 35.0%
TCATGAAAATATGCAGGTGA+TGG - chr5_4:45836724-45836743 Msa0853820:five_prime_UTR 35.0%
GAAACACCAATAGTCAGAAT+TGG - chr5_4:45836801-45836820 Msa0853820:five_prime_UTR 35.0%
TTGCATTGCTCCTTTATTGT+TGG + chr5_4:45836937-45836956 None:intergenic 35.0%
AACAATAAAGGAGCAATGCA+AGG - chr5_4:45836936-45836955 Msa0853820:five_prime_UTR 35.0%
GAATCAAAAAGCAGAGATGT+TGG - chr5_4:45837048-45837067 Msa0853820:five_prime_UTR 35.0%
AAAGAGAAACTCGCATAACA+AGG + chr5_4:45837186-45837205 None:intergenic 35.0%
!! GACTGACTGTAATTTCTAGT+CGG - chr5_4:45834793-45834812 Msa0853820:intron 35.0%
!! ACATCTTTTGAGTGAGGTTA+TGG - chr5_4:45837457-45837476 Msa0853820:five_prime_UTR 35.0%
CCTGTATGTTTCATACATGA+AGG + chr5_4:45837503-45837522 None:intergenic 35.0%
CCTTCATGTATGAAACATAC+AGG - chr5_4:45837500-45837519 Msa0853820:five_prime_UTR 35.0%
ATGTATGAAACATACAGGCA+AGG - chr5_4:45837505-45837524 Msa0853820:five_prime_UTR 35.0%
TGTATGAAACATACAGGCAA+GGG - chr5_4:45837506-45837525 Msa0853820:five_prime_UTR 35.0%
! GCAAGGGACTGAATATATTT+TGG - chr5_4:45837522-45837541 Msa0853820:five_prime_UTR 35.0%
ATTGATATGGTTGGCATGAA+AGG - chr5_4:45837615-45837634 Msa0853820:five_prime_UTR 35.0%
AATGTTGCTGACAAGACATA+AGG - chr5_4:45837773-45837792 Msa0853820:five_prime_UTR 35.0%
ATGTTGCTGACAAGACATAA+GGG - chr5_4:45837774-45837793 Msa0853820:five_prime_UTR 35.0%
AAAAACTACACTAGAGGGAT+TGG + chr5_4:45837821-45837840 None:intergenic 35.0%
! TAATCAGACATTTTGTGCCT+TGG - chr5_4:45837856-45837875 Msa0853820:five_prime_UTR 35.0%
! AATCAGACATTTTGTGCCTT+GGG - chr5_4:45837857-45837876 Msa0853820:five_prime_UTR 35.0%
AACAGTGAAATTAGAGAGGT+TGG + chr5_4:45838078-45838097 None:intergenic 35.0%
! AGTATATATCCCTTTGGGTT+TGG + chr5_4:45838126-45838145 None:intergenic 35.0%
TATATACTAACATAGGCCAC+AGG - chr5_4:45838138-45838157 Msa0853820:five_prime_UTR 35.0%
ATATACTAACATAGGCCACA+GGG - chr5_4:45838139-45838158 Msa0853820:five_prime_UTR 35.0%
! TATCTGGAGCCAATATTTGT+TGG - chr5_4:45838171-45838190 Msa0853820:five_prime_UTR 35.0%
GAGAATGCACCAACAAATAT+TGG + chr5_4:45838183-45838202 None:intergenic 35.0%
AAGTTTCTTAACAAACCGTC+AGG + chr5_4:45838534-45838553 None:intergenic 35.0%
TCAAAAACTCAAGTGAAGTG+AGG + chr5_4:45835591-45835610 None:intergenic 35.0%
AATGGGAAGCAACAAACAAA+GGG + chr5_4:45838971-45838990 None:intergenic 35.0%
AAATGGGAAGCAACAAACAA+AGG + chr5_4:45838972-45838991 None:intergenic 35.0%
TACCACATTTCTATCACATC+TGG - chr5_4:45838991-45839010 Msa0853820:five_prime_UTR 35.0%
TACCAGATGTGATAGAAATG+TGG + chr5_4:45838996-45839015 None:intergenic 35.0%
ACATTTCTATCACATCTGGT+AGG - chr5_4:45838995-45839014 Msa0853820:five_prime_UTR 35.0%
ATCTTCTGTACTGTATTTGC+AGG - chr5_4:45839073-45839092 Msa0853820:five_prime_UTR 35.0%
!!! GCTCTAAGACAGATTTTAGA+TGG + chr5_4:45839171-45839190 None:intergenic 35.0%
GATTCTTTACGCAACTTGCA+AGG + chr5_4:45830147-45830166 None:intergenic 40.0%
ATCAAGTCTGGTAGAGTTAG+AGG - chr5_4:45830555-45830574 Msa0853820:intron 40.0%
CTAAAGTTTCGCCATGAGAT+CGG - chr5_4:45830618-45830637 Msa0853820:intron 40.0%
GGTTGGATGATATTGCTGAA+AGG - chr5_4:45830667-45830686 Msa0853820:intron 40.0%
TGGATGATATTGCTGAAAGG+AGG - chr5_4:45830670-45830689 Msa0853820:intron 40.0%
!!! TTTTTTCTACAGGAGGGTAC+TGG - chr5_4:45830699-45830718 Msa0853820:intron 40.0%
TCCCAAATGAAGTAGCTGAA+TGG - chr5_4:45830736-45830755 Msa0853820:intron 40.0%
GCCATTCAGCTACTTCATTT+GGG + chr5_4:45830740-45830759 None:intergenic 40.0%
TGGTTCAGTAATAATAGCGC+TGG + chr5_4:45830769-45830788 None:intergenic 40.0%
! TCTTCTCGTCCAAACACTTT+TGG + chr5_4:45830789-45830808 None:intergenic 40.0%
GGAATAGATGGAAAGGAAGT+CGG + chr5_4:45830859-45830878 None:intergenic 40.0%
!!! TATTCCGTTTTTGGGTTAGG+TGG - chr5_4:45830873-45830892 Msa0853820:intron 40.0%
AAGACCACCTAACCCAAAAA+CGG + chr5_4:45830880-45830899 None:intergenic 40.0%
AGGGTGCAAGAATTATTGCA+AGG - chr5_4:45831077-45831096 Msa0853820:intron 40.0%
!!! TGCTAGTTTTGGATGATGTG+TGG - chr5_4:45831111-45831130 Msa0853820:intron 40.0%
! CTGGGTTGACAGAAGATAAA+TGG - chr5_4:45831156-45831175 Msa0853820:intron 40.0%
TTTAGTATCCACTCGTGATG+AGG - chr5_4:45831226-45831245 Msa0853820:intron 40.0%
TTGCAACAATCACAGGAACA+TGG - chr5_4:45831252-45831271 Msa0853820:intron 40.0%
TGCAACAATCACAGGAACAT+GGG - chr5_4:45831253-45831272 Msa0853820:intron 40.0%
CAAGGAATGAAGAAGAGGAA+TGG - chr5_4:45831450-45831469 Msa0853820:intron 40.0%
AAGTAACTCAACCTCAAAGC+AGG + chr5_4:45831524-45831543 None:intergenic 40.0%
! AGGACGAATTGATTCAGCTT+TGG - chr5_4:45831615-45831634 Msa0853820:intron 40.0%
!! CGAATTGATTCAGCTTTGGA+TGG - chr5_4:45831619-45831638 Msa0853820:intron 40.0%
!! ATTCAGCTTTGGATGGCTAA+TGG - chr5_4:45831626-45831645 Msa0853820:intron 40.0%
GGTTGAAGATGTTGGAAACA+TGG - chr5_4:45831673-45831692 Msa0853820:intron 40.0%
! TGTTGGAAACATGGTTTGGA+AGG - chr5_4:45831682-45831701 Msa0853820:intron 40.0%
! TTACTGATTGAGCGAGATCA+TGG + chr5_4:45831790-45831809 None:intergenic 40.0%
TGATCTCGCTCAATCAGTAA+TGG - chr5_4:45831790-45831809 Msa0853820:intron 40.0%
GATCTCGCTCAATCAGTAAT+GGG - chr5_4:45831791-45831810 Msa0853820:intron 40.0%
ATCTCGCTCAATCAGTAATG+GGG - chr5_4:45831792-45831811 Msa0853820:intron 40.0%
GGGGCAAGAATGTATGTATT+TGG - chr5_4:45831811-45831830 Msa0853820:intron 40.0%
! TCAAAAAGCACACACCACAT+TGG - chr5_4:45831857-45831876 Msa0853820:intron 40.0%
TCCCAACATACCTTTCTCTT+CGG - chr5_4:45831990-45832009 Msa0853820:intron 40.0%
TGAATTAAACCCCCTAGTGA+TGG + chr5_4:45832043-45832062 None:intergenic 40.0%
! TTAAGCAAGCCAAGCGTTTT+GGG + chr5_4:45832180-45832199 None:intergenic 40.0%
TCCCGAATGTTTCCTAACAT+TGG - chr5_4:45832241-45832260 Msa0853820:intron 40.0%
GAGTTACGTGATCTAAACCT+CGG - chr5_4:45832331-45832350 Msa0853820:intron 40.0%
! CAGTTTATCTGAAGCTCAAG+CGG - chr5_4:45832390-45832409 Msa0853820:intron 40.0%
AAGCACTTGAGATTTGAGTG+AGG + chr5_4:45832529-45832548 None:intergenic 40.0%
TCACTCAAATCTCAAGTGCT+TGG - chr5_4:45832528-45832547 Msa0853820:CDS 40.0%
! CTTGGATGATGATGAATCTC+AGG - chr5_4:45832717-45832736 Msa0853820:CDS 40.0%
! GATGATGATGAATCTCAGGA+TGG - chr5_4:45832721-45832740 Msa0853820:CDS 40.0%
TGATGAATCTCAGGATGGTA+TGG - chr5_4:45832726-45832745 Msa0853820:CDS 40.0%
ATATGAGTACCTCCAGAGAT+GGG + chr5_4:45832765-45832784 None:intergenic 40.0%
AATATGAGTACCTCCAGAGA+TGG + chr5_4:45832766-45832785 None:intergenic 40.0%
CATAGAGGGGTTATTGAAAG+TGG - chr5_4:45832801-45832820 Msa0853820:CDS 40.0%
GGGTTATTGAAAGTGGAAAG+AGG - chr5_4:45832808-45832827 Msa0853820:CDS 40.0%
! ATCATCGATTGCCCTAAACT+TGG - chr5_4:45832862-45832881 Msa0853820:CDS 40.0%
TCTTAAAGACCTCGTCGTAT+GGG - chr5_4:45832906-45832925 Msa0853820:intron 40.0%
CTTTCCCTAATTAACGGTGA+AGG - chr5_4:45832982-45833001 Msa0853820:intron 40.0%
AGTCCTTACCAGAGCAAAAT+TGG - chr5_4:45833154-45833173 Msa0853820:intron 40.0%
GTCCTTACCAGAGCAAAATT+GGG - chr5_4:45833155-45833174 Msa0853820:intron 40.0%
! TTCCCAATTTTGCTCTGGTA+AGG + chr5_4:45833160-45833179 None:intergenic 40.0%
TTACCAGAGCAAAATTGGGA+AGG - chr5_4:45833159-45833178 Msa0853820:intron 40.0%
!! CCAAATCTCTAGAGTTCGAA+GGG + chr5_4:45833193-45833212 None:intergenic 40.0%
! CCTTCGAACTCTAGAGATTT+GGG - chr5_4:45833191-45833210 Msa0853820:intron 40.0%
! CTTCGAACTCTAGAGATTTG+GGG - chr5_4:45833192-45833211 Msa0853820:intron 40.0%
TTGGAGATGCCCAACATTAA+AGG - chr5_4:45833281-45833300 Msa0853820:intron 40.0%
ATGGTGATTGAGGCAGATAA+GGG + chr5_4:45833400-45833419 None:intergenic 40.0%
! GATTTTTGCGATGGTGATTG+AGG + chr5_4:45833410-45833429 None:intergenic 40.0%
CGTTAATCCCGTCATTTGTA+GGG + chr5_4:45833732-45833751 None:intergenic 40.0%
! CCTACAAATGACGGGATTAA+CGG - chr5_4:45833730-45833749 Msa0853820:intron 40.0%
! CTACAAATGACGGGATTAAC+GGG - chr5_4:45833731-45833750 Msa0853820:intron 40.0%
AACATGAGAAGAGCAATGCA+AGG - chr5_4:45834284-45834303 Msa0853820:CDS 40.0%
! GATATTGGTGTTTCTGCTTC+TGG - chr5_4:45834399-45834418 Msa0853820:intron 40.0%
! AAGGTGCCTACAAGTTTAGT+CGG + chr5_4:45834437-45834456 None:intergenic 40.0%
AGAAAGATGGAGGGAGATTA+AGG + chr5_4:45834456-45834475 None:intergenic 40.0%
CACAAACGAAAGAAAGATGG+AGG + chr5_4:45834466-45834485 None:intergenic 40.0%
GCAAAAACGGTACAAGAGAT+TGG + chr5_4:45834513-45834532 None:intergenic 40.0%
!! ATCTCTTGTACCGTTTTTGC+AGG - chr5_4:45834513-45834532 Msa0853820:intron 40.0%
GGAGACCATAGTGAAAAAAC+AGG + chr5_4:45834549-45834568 None:intergenic 40.0%
CAACATGTGTGTAATACTCC+GGG - chr5_4:45834948-45834967 Msa0853820:CDS 40.0%
! GCAGATTTTCTGTCTTTGGT+TGG + chr5_4:45835128-45835147 None:intergenic 40.0%
ACCAAAGACAGAAAATCTGC+AGG - chr5_4:45835128-45835147 Msa0853820:intron 40.0%
! ACCTGCAGATTTTCTGTCTT+TGG + chr5_4:45835132-45835151 None:intergenic 40.0%
AATCCCAACCATGTTTGTGT+CGG - chr5_4:45835260-45835279 Msa0853820:intron 40.0%
AACATTGTCCGACACAAACA+TGG + chr5_4:45835271-45835290 None:intergenic 40.0%
TGTCAACTGTTCAGTTTCAC+AGG + chr5_4:45835497-45835516 None:intergenic 40.0%
GGTTTCAAATACCTTATGGC+AGG + chr5_4:45835570-45835589 None:intergenic 40.0%
TTGTGGTTGCCCAAATTCAA+AGG - chr5_4:45835615-45835634 Msa0853820:intron 40.0%
! CCCAAATTCAAAGGAGTGTA+AGG - chr5_4:45835624-45835643 Msa0853820:intron 40.0%
TAGAAGCTCAACCAACTCAT+GGG + chr5_4:45836504-45836523 None:intergenic 40.0%
TGATCACGTAAAGGTAACCT+TGG - chr5_4:45836638-45836657 Msa0853820:five_prime_UTR 40.0%
! GGCAGTTCAAGTTTAATCAG+CGG - chr5_4:45836779-45836798 Msa0853820:five_prime_UTR 40.0%
ACATCGCCAATTCTGACTAT+TGG + chr5_4:45836810-45836829 None:intergenic 40.0%
AATAAAGGAGCAATGCAAGG+AGG - chr5_4:45836939-45836958 Msa0853820:five_prime_UTR 40.0%
AAAGGAGAGGATGTTGACAA+TGG - chr5_4:45837633-45837652 Msa0853820:five_prime_UTR 40.0%
! AGTAACTTTGGCTCATGTGT+TGG + chr5_4:45837663-45837682 None:intergenic 40.0%
! ATCAGACATTTTGTGCCTTG+GGG - chr5_4:45837858-45837877 Msa0853820:five_prime_UTR 40.0%
TGAAATTAGAGAGGTTGGCA+TGG + chr5_4:45838073-45838092 None:intergenic 40.0%
TTAGGACAGAAGCTGTAAGT+TGG - chr5_4:45838099-45838118 Msa0853820:five_prime_UTR 40.0%
! TAAGTTGGACCAAACCCAAA+GGG - chr5_4:45838114-45838133 Msa0853820:five_prime_UTR 40.0%
!! GCTTTGTTTGTTGGGTTGTA+AGG + chr5_4:45838231-45838250 None:intergenic 40.0%
!! GAAGGTTGGCTTTGTTTGTT+GGG + chr5_4:45838239-45838258 None:intergenic 40.0%
!! AGAAGGTTGGCTTTGTTTGT+TGG + chr5_4:45838240-45838259 None:intergenic 40.0%
! AGTGAAAGCACAATTGCAGA+TGG - chr5_4:45838272-45838291 Msa0853820:five_prime_UTR 40.0%
!! CTCAAATTTGGCTTGCAATC+TGG + chr5_4:45838477-45838496 None:intergenic 40.0%
CCTATGTTGAAGGGTTCATT+TGG + chr5_4:45838609-45838628 None:intergenic 40.0%
CCAAATGAACCCTTCAACAT+AGG - chr5_4:45838606-45838625 Msa0853820:five_prime_UTR 40.0%
TGAACCCTTCAACATAGGAT+TGG - chr5_4:45838611-45838630 Msa0853820:five_prime_UTR 40.0%
CACTCCAATCCTATGTTGAA+GGG + chr5_4:45838618-45838637 None:intergenic 40.0%
ACACTCCAATCCTATGTTGA+AGG + chr5_4:45838619-45838638 None:intergenic 40.0%
TGTCTGAGTATCTCTTCTTG+TGG - chr5_4:45838636-45838655 Msa0853820:five_prime_UTR 40.0%
AGTCTATACCGGAACAAACA+TGG - chr5_4:45838667-45838686 Msa0853820:five_prime_UTR 40.0%
GTCTATACCGGAACAAACAT+GGG - chr5_4:45838668-45838687 Msa0853820:five_prime_UTR 40.0%
GTGTCGAATAGATTCAGGAA+AGG + chr5_4:45838748-45838767 None:intergenic 40.0%
TCGAGGTTGCTCAACATTAA+AGG - chr5_4:45838794-45838813 Msa0853820:five_prime_UTR 40.0%
TTAAAGGAGCGATGCATGAA+AGG - chr5_4:45838810-45838829 Msa0853820:five_prime_UTR 40.0%
TTCTTATATGCTTCCACCAC+CGG - chr5_4:45838938-45838957 Msa0853820:five_prime_UTR 40.0%
ACACTCTTGACTCTTCACTA+TGG - chr5_4:45839101-45839120 Msa0853820:five_prime_UTR 40.0%
ATTCTCAAAGGTCTCCAGCT+TGG - chr5_4:45830211-45830230 Msa0853820:CDS 45.0%
CAGACCGCTCTATTAAGCTA+TGG - chr5_4:45830475-45830494 Msa0853820:intron 45.0%
GCAGCCATAGCTTAATAGAG+CGG + chr5_4:45830482-45830501 None:intergenic 45.0%
GATGAGTTCTCGATCAAGTC+TGG - chr5_4:45830543-45830562 Msa0853820:intron 45.0%
! CTCATGGCGAAACTTTAGAG+AGG + chr5_4:45830616-45830635 None:intergenic 45.0%
TCAACCTGTTACCGATCTCA+TGG + chr5_4:45830632-45830651 None:intergenic 45.0%
GGTTGAAAGAGATTACAGGG+AGG - chr5_4:45830646-45830665 Msa0853820:intron 45.0%
GAAAGAGATTACAGGGAGGT+TGG - chr5_4:45830650-45830669 Msa0853820:intron 45.0%
CGCCATTCAGCTACTTCATT+TGG + chr5_4:45830741-45830760 None:intergenic 45.0%
!!! GTTTTTGGGTTAGGTGGTCT+TGG - chr5_4:45830879-45830898 Msa0853820:intron 45.0%
GAGTTGTCGTGTGGATCAAA+AGG - chr5_4:45831194-45831213 Msa0853820:intron 45.0%
GAGGTTGTTGCAACAATCAC+AGG - chr5_4:45831245-45831264 Msa0853820:intron 45.0%
TGGGAAACTCACCGTTTATC+TGG - chr5_4:45831272-45831291 Msa0853820:intron 45.0%
CATCGGAGAGACCAGATAAA+CGG + chr5_4:45831286-45831305 None:intergenic 45.0%
CAACAGCCAGCATTCATCAT+CGG + chr5_4:45831303-45831322 None:intergenic 45.0%
TGGGAGGTTTAATGAGCTCA+AGG - chr5_4:45831432-45831451 Msa0853820:intron 45.0%
GAGCTCAAGGAATGAAGAAG+AGG - chr5_4:45831445-45831464 Msa0853820:intron 45.0%
GCTGAATCAATTCGTCCTTC+AGG + chr5_4:45831613-45831632 None:intergenic 45.0%
! CCCGAAGAGAAAGGTATGTT+GGG + chr5_4:45831994-45832013 None:intergenic 45.0%
CCCAACATACCTTTCTCTTC+GGG - chr5_4:45831991-45832010 Msa0853820:intron 45.0%
! ACCCGAAGAGAAAGGTATGT+TGG + chr5_4:45831995-45832014 None:intergenic 45.0%
TGCGTAAAACCCGAAGAGAA+AGG + chr5_4:45832003-45832022 None:intergenic 45.0%
TAGTGATGGCATCCGGATAA+AGG + chr5_4:45832029-45832048 None:intergenic 45.0%
TTTATCCGGATGCCATCACT+AGG - chr5_4:45832028-45832047 Msa0853820:intron 45.0%
TTATCCGGATGCCATCACTA+GGG - chr5_4:45832029-45832048 Msa0853820:intron 45.0%
! GTTAAGCAAGCCAAGCGTTT+TGG + chr5_4:45832181-45832200 None:intergenic 45.0%
TTACGTGATCTAAACCTCGG+TGG - chr5_4:45832334-45832353 Msa0853820:intron 45.0%
TTGCTCAGCACTAATAGCTG+GGG + chr5_4:45832488-45832507 None:intergenic 45.0%
CTTGCTCAGCACTAATAGCT+GGG + chr5_4:45832489-45832508 None:intergenic 45.0%
ACTTGCTCAGCACTAATAGC+TGG + chr5_4:45832490-45832509 None:intergenic 45.0%
TGAATCTCAGGATGGTATGG+AGG - chr5_4:45832729-45832748 Msa0853820:CDS 45.0%
ATGGCAGCAGTCCAAGTTTA+GGG + chr5_4:45832876-45832895 None:intergenic 45.0%
! ACGACGAGGTCTTTAAGAGA+TGG + chr5_4:45832904-45832923 None:intergenic 45.0%
CTCTTAAAGACCTCGTCGTA+TGG - chr5_4:45832905-45832924 Msa0853820:intron 45.0%
CTTAAAGACCTCGTCGTATG+GGG - chr5_4:45832907-45832926 Msa0853820:intron 45.0%
AGGAATAACATCCTTCCCAG+AGG - chr5_4:45833002-45833021 Msa0853820:intron 45.0%
GGAATAACATCCTTCCCAGA+GGG - chr5_4:45833003-45833022 Msa0853820:intron 45.0%
GAATAACATCCTTCCCAGAG+GGG - chr5_4:45833004-45833023 Msa0853820:intron 45.0%
! GGTTTTTGAACATCCCCTCT+GGG + chr5_4:45833020-45833039 None:intergenic 45.0%
! AGGTTTTTGAACATCCCCTC+TGG + chr5_4:45833021-45833040 None:intergenic 45.0%
GCTGGGTTAAAGGGTTCATT+TGG + chr5_4:45833096-45833115 None:intergenic 45.0%
GTCGTCAAAGCTGGGTTAAA+GGG + chr5_4:45833105-45833124 None:intergenic 45.0%
AGTCGTCAAAGCTGGGTTAA+AGG + chr5_4:45833106-45833125 None:intergenic 45.0%
TAGACAGAGTCGTCAAAGCT+GGG + chr5_4:45833113-45833132 None:intergenic 45.0%
ATAGACAGAGTCGTCAAAGC+TGG + chr5_4:45833114-45833133 None:intergenic 45.0%
! AGACCTTCCCAATTTTGCTC+TGG + chr5_4:45833165-45833184 None:intergenic 45.0%
! CCCTTCGAACTCTAGAGATT+TGG - chr5_4:45833190-45833209 Msa0853820:intron 45.0%
!! CCCAAATCTCTAGAGTTCGA+AGG + chr5_4:45833194-45833213 None:intergenic 45.0%
! CTAGAGATTTGGGGTTGTGA+AGG - chr5_4:45833201-45833220 Msa0853820:intron 45.0%
TGAAGGATTGCAATGCTTGC+CGG - chr5_4:45833218-45833237 Msa0853820:intron 45.0%
!! CTCTCGAGGTTCTGAGAATT+TGG - chr5_4:45833262-45833281 Msa0853820:intron 45.0%
AACGATGCAAAGAGGGAACA+GGG - chr5_4:45833304-45833323 Msa0853820:intron 45.0%
GATGGTGATTGAGGCAGATA+AGG + chr5_4:45833401-45833420 None:intergenic 45.0%
AGGATTGCCTTTGACACACA+AGG - chr5_4:45833701-45833720 Msa0853820:intron 45.0%
GGATTGCCTTTGACACACAA+GGG - chr5_4:45833702-45833721 Msa0853820:intron 45.0%
CCGTTAATCCCGTCATTTGT+AGG + chr5_4:45833733-45833752 None:intergenic 45.0%
TGGGTGCAGAACAAAGATCA+TGG - chr5_4:45833971-45833990 Msa0853820:intron 45.0%
CAGAACAAAGATCATGGCCA+AGG - chr5_4:45833977-45833996 Msa0853820:CDS 45.0%
CATCGAAGCAATTGCATCCT+TGG + chr5_4:45833997-45834016 None:intergenic 45.0%
CAAGGATGCAATTGCTTCGA+TGG - chr5_4:45833995-45834014 Msa0853820:CDS 45.0%
TGAGAAGAGCAATGCAAGGA+CGG - chr5_4:45834288-45834307 Msa0853820:CDS 45.0%
TAGAAATGAGGCCCTGTGTT+CGG - chr5_4:45835058-45835077 Msa0853820:intron 45.0%
AAGCAACAATGCCGAACACA+GGG + chr5_4:45835072-45835091 None:intergenic 45.0%
TAAGCAACAATGCCGAACAC+AGG + chr5_4:45835073-45835092 None:intergenic 45.0%
! TCGGCATTGTTGCTTACCAA+AGG - chr5_4:45835077-45835096 Msa0853820:intron 45.0%
! CGGCATTGTTGCTTACCAAA+GGG - chr5_4:45835078-45835097 Msa0853820:intron 45.0%
AAGCATCACATTGCTCCCTT+TGG + chr5_4:45835096-45835115 None:intergenic 45.0%
TGTCCGACACAAACATGGTT+GGG + chr5_4:45835266-45835285 None:intergenic 45.0%
TTGTCCGACACAAACATGGT+TGG + chr5_4:45835267-45835286 None:intergenic 45.0%
CTTGCTTTCAGGAAAAGCAG+TGG + chr5_4:45835311-45835330 None:intergenic 45.0%
!! CTGCTTTTCCTGAAAGCAAG+AGG - chr5_4:45835311-45835330 Msa0853820:intron 45.0%
! TGAAGCATCCTCTTGCTTTC+AGG + chr5_4:45835322-45835341 None:intergenic 45.0%
GAATTGAGATCCCTGCCATA+AGG - chr5_4:45835556-45835575 Msa0853820:intron 45.0%
CTTGGTTCAAGCTATTAGCC+AGG - chr5_4:45836347-45836366 Msa0853820:five_prime_UTR 45.0%
TGAAGAGCTGTATACACACC+TGG + chr5_4:45836368-45836387 None:intergenic 45.0%
AGAAGCTCAACCAACTCATG+GGG + chr5_4:45836503-45836522 None:intergenic 45.0%
GTAGAAGCTCAACCAACTCA+TGG + chr5_4:45836505-45836524 None:intergenic 45.0%
TAGGAACTGAAGAATGGCCA+AGG + chr5_4:45836658-45836677 None:intergenic 45.0%
TAGAAGAGTGAGATGCTTGC+CGG - chr5_4:45836864-45836883 Msa0853820:five_prime_UTR 45.0%
TCAGAACCTCGAGAGAAATG+AGG + chr5_4:45836903-45836922 None:intergenic 45.0%
GGATATGCCTCTCATTTCTC+TGG - chr5_4:45837150-45837169 Msa0853820:five_prime_UTR 45.0%
CCATAGTCCAGAGAAATGAG+AGG + chr5_4:45837160-45837179 None:intergenic 45.0%
CCTCTCATTTCTCTGGACTA+TGG - chr5_4:45837157-45837176 Msa0853820:five_prime_UTR 45.0%
! AGCTTGTTCACAGCCTTCTT+TGG + chr5_4:45837564-45837583 None:intergenic 45.0%
TATGGTTGGCATGAAAGGAG+AGG - chr5_4:45837620-45837639 Msa0853820:five_prime_UTR 45.0%
TATAGCTTCTCCTAAGCCTC+AGG - chr5_4:45837715-45837734 Msa0853820:five_prime_UTR 45.0%
AAATCAAGGACAACCTCCTG+AGG + chr5_4:45837734-45837753 None:intergenic 45.0%
! TCAGACATTTTGTGCCTTGG+GGG - chr5_4:45837859-45837878 Msa0853820:five_prime_UTR 45.0%
! GTAAGTTGGACCAAACCCAA+AGG - chr5_4:45838113-45838132 Msa0853820:five_prime_UTR 45.0%
CAGATAAGTAACAGTCCCTG+TGG + chr5_4:45838157-45838176 None:intergenic 45.0%
! CACAGGGACTGTTACTTATC+TGG - chr5_4:45838155-45838174 Msa0853820:five_prime_UTR 45.0%
TCACGTCTTCACCGTTATTG+TGG + chr5_4:45838503-45838522 None:intergenic 45.0%
TGGTGAGCTTGAGTCTATAC+CGG - chr5_4:45838656-45838675 Msa0853820:five_prime_UTR 45.0%
ATACCGGAACAAACATGGGA+AGG - chr5_4:45838672-45838691 Msa0853820:five_prime_UTR 45.0%
AGACCTTCCCATGTTTGTTC+CGG + chr5_4:45838678-45838697 None:intergenic 45.0%
!! GTGAGGTGTCGAATAGATTC+AGG + chr5_4:45838753-45838772 None:intergenic 45.0%
ACAAACAAAGGGAAGACCAC+CGG + chr5_4:45838960-45838979 None:intergenic 45.0%
!! AATATATGTTAATATATTAT+AGG + chr5_4:45836677-45836696 None:intergenic 5.0%
AAAATGGCCGACGCTTTGCT+CGG - chr5_4:45830312-45830331 Msa0853820:intron 50.0%
TTCGCCATGAGATCGGTAAC+AGG - chr5_4:45830625-45830644 Msa0853820:intron 50.0%
!! AGGAGGGTACTGGAACTGTT+CGG - chr5_4:45830709-45830728 Msa0853820:intron 50.0%
GTTTCTTCTCACCCAAGCGA+AGG - chr5_4:45830830-45830849 Msa0853820:intron 50.0%
TGCAACAACCTCATCACGAG+TGG + chr5_4:45831237-45831256 None:intergenic 50.0%
GTCTCTCCGATGATGAATGC+TGG - chr5_4:45831294-45831313 Msa0853820:intron 50.0%
!! CCTCTTGCAGCGAAAGCATT+GGG - chr5_4:45831413-45831432 Msa0853820:intron 50.0%
TATCCGGATGCCATCACTAG+GGG - chr5_4:45832030-45832049 Msa0853820:intron 50.0%
GAGTTGTCTCCCAAAACGCT+TGG - chr5_4:45832168-45832187 Msa0853820:intron 50.0%
GGTGGAGAGTTGTGTATCGA+AGG - chr5_4:45832352-45832371 Msa0853820:intron 50.0%
AAGCTCAAGCGGCTAATCTG+AGG - chr5_4:45832401-45832420 Msa0853820:intron 50.0%
AGCTCAAGCGGCTAATCTGA+GGG - chr5_4:45832402-45832421 Msa0853820:intron 50.0%
AGCACTAATAGCTGGGGGTT+TGG + chr5_4:45832482-45832501 None:intergenic 50.0%
TGCTCAGCACTAATAGCTGG+GGG + chr5_4:45832487-45832506 None:intergenic 50.0%
ATTGTGCGGCTTCCGTTACT+TGG - chr5_4:45832640-45832659 Msa0853820:intron 50.0%
TCAGGATGGTATGGAGGTGA+GGG - chr5_4:45832735-45832754 Msa0853820:CDS 50.0%
CATGGCAGCAGTCCAAGTTT+AGG + chr5_4:45832877-45832896 None:intergenic 50.0%
TGTTACATCCCCATACGACG+AGG + chr5_4:45832918-45832937 None:intergenic 50.0%
AGGTCAATCTCTACCTTCCG+TGG - chr5_4:45832949-45832968 Msa0853820:intron 50.0%
AAGCTGAGTAAGACCACGGA+AGG + chr5_4:45832965-45832984 None:intergenic 50.0%
GGGAAAGCTGAGTAAGACCA+CGG + chr5_4:45832969-45832988 None:intergenic 50.0%
! TTTGAACATCCCCTCTGGGA+AGG + chr5_4:45833016-45833035 None:intergenic 50.0%
TCAGAACCTCGAGAGAAGTG+AGG + chr5_4:45833257-45833276 None:intergenic 50.0%
GAACGATGCAAAGAGGGAAC+AGG - chr5_4:45833303-45833322 Msa0853820:intron 50.0%
ACGATGCAAAGAGGGAACAG+GGG - chr5_4:45833305-45833324 Msa0853820:intron 50.0%
!! TTCTTTGGAACCCATTCCGC+AGG - chr5_4:45833507-45833526 Msa0853820:intron 50.0%
TGGATCTCTTCCTGCGGAAT+GGG + chr5_4:45833520-45833539 None:intergenic 50.0%
GTACTCTGGATCTCTTCCTG+CGG + chr5_4:45833526-45833545 None:intergenic 50.0%
TTGCCTTTGACACACAAGGG+TGG - chr5_4:45833705-45833724 Msa0853820:intron 50.0%
TGCCTTTGACACACAAGGGT+GGG - chr5_4:45833706-45833725 Msa0853820:intron 50.0%
TGCTGAAGTTCCCCATGAGT+TGG - chr5_4:45836490-45836509 Msa0853820:five_prime_UTR 50.0%
ATGAGGTGTGGAATACCCTC+CGG + chr5_4:45836886-45836905 None:intergenic 50.0%
TCCACACCTCATTTCTCTCG+AGG - chr5_4:45836894-45836913 Msa0853820:five_prime_UTR 50.0%
ACCTCGAGAGAAATGAGGTG+TGG + chr5_4:45836898-45836917 None:intergenic 50.0%
GAGCAATGCAAGGAGGAAAC+AGG - chr5_4:45836946-45836965 Msa0853820:five_prime_UTR 50.0%
ATGCAAGGAGGAAACAGGAG+AGG - chr5_4:45836951-45836970 Msa0853820:five_prime_UTR 50.0%
CTTGGTACTCTCCTCTTTGC+AGG - chr5_4:45837129-45837148 Msa0853820:five_prime_UTR 50.0%
! GAGAGGCATATCCTGCAAAG+AGG + chr5_4:45837143-45837162 None:intergenic 50.0%
CTCTAGATTGGGCAGGATTC+AGG - chr5_4:45837882-45837901 Msa0853820:five_prime_UTR 50.0%
GAGCGATGCATGAAAGGAAC+CGG - chr5_4:45838816-45838835 Msa0853820:five_prime_UTR 50.0%
ATGCATGAAAGGAACCGGTG+AGG - chr5_4:45838821-45838840 Msa0853820:five_prime_UTR 50.0%
TATCTTGTCCCAGTCCTCAC+CGG + chr5_4:45838838-45838857 None:intergenic 50.0%
TTATATGCTTCCACCACCGG+TGG - chr5_4:45838941-45838960 Msa0853820:five_prime_UTR 50.0%
!! GAATGAGCGCTGAACCAAGC+TGG + chr5_4:45830228-45830247 None:intergenic 55.0%
CACAACTCCGAGCAAAGCGT+CGG + chr5_4:45830322-45830341 None:intergenic 55.0%
!! GGAGGGTACTGGAACTGTTC+GGG - chr5_4:45830710-45830729 Msa0853820:intron 55.0%
GAAGTCGGAGTCCTTCGCTT+GGG + chr5_4:45830844-45830863 None:intergenic 55.0%
! GCCTCTTGCAGCGAAAGCAT+TGG - chr5_4:45831412-45831431 Msa0853820:intron 55.0%
CCCAATGCTTTCGCTGCAAG+AGG + chr5_4:45831416-45831435 None:intergenic 55.0%
!! CTTGCAGCGAAAGCATTGGG+AGG - chr5_4:45831416-45831435 Msa0853820:intron 55.0%
ATCCGGATGCCATCACTAGG+GGG - chr5_4:45832031-45832050 Msa0853820:intron 55.0%
AACCCCCTAGTGATGGCATC+CGG + chr5_4:45832036-45832055 None:intergenic 55.0%
CGATACACAACTCTCCACCG+AGG + chr5_4:45832351-45832370 None:intergenic 55.0%
GCTCAAGCGGCTAATCTGAG+GGG - chr5_4:45832403-45832422 Msa0853820:intron 55.0%
CTCAGGATGGTATGGAGGTG+AGG - chr5_4:45832734-45832753 Msa0853820:CDS 55.0%
! GGTGAGGGTTTTCCCATCTC+TGG - chr5_4:45832750-45832769 Msa0853820:CDS 55.0%
! GAGGGTTTTCCCATCTCTGG+AGG - chr5_4:45832753-45832772 Msa0853820:CDS 55.0%
AGGATTGCAATGCTTGCCGG+AGG - chr5_4:45833221-45833240 Msa0853820:intron 55.0%
GGATTGCAATGCTTGCCGGA+GGG - chr5_4:45833222-45833241 Msa0853820:intron 55.0%
!! GTGAGGTGTCGAATACCCTC+CGG + chr5_4:45833240-45833259 None:intergenic 55.0%
TCGACACCTCACTTCTCTCG+AGG - chr5_4:45833248-45833267 Msa0853820:intron 55.0%
ATGCAAAGAGGGAACAGGGG+AGG - chr5_4:45833308-45833327 Msa0853820:intron 55.0%
AAGAGGGAACAGGGGAGGAT+TGG - chr5_4:45833313-45833332 Msa0853820:intron 55.0%
AGAGGGAACAGGGGAGGATT+GGG - chr5_4:45833314-45833333 Msa0853820:intron 55.0%
CTGGATCTCTTCCTGCGGAA+TGG + chr5_4:45833521-45833540 None:intergenic 55.0%
AGGGTGGGCCCTACAAATGA+CGG - chr5_4:45833721-45833740 Msa0853820:intron 55.0%
GCAATGCAAGGACGGAACAG+TGG - chr5_4:45834296-45834315 Msa0853820:CDS 55.0%
ATGCAAGGACGGAACAGTGG+AGG - chr5_4:45834299-45834318 Msa0853820:CDS 55.0%
AAGAGTGAGATGCTTGCCGG+AGG - chr5_4:45836867-45836886 Msa0853820:five_prime_UTR 55.0%
AGAGTGAGATGCTTGCCGGA+GGG - chr5_4:45836868-45836887 Msa0853820:five_prime_UTR 55.0%
AGCTTCTCCTAAGCCTCAGG+AGG - chr5_4:45837718-45837737 Msa0853820:five_prime_UTR 55.0%
AGGACAACCTCCTGAGGCTT+AGG + chr5_4:45837728-45837747 None:intergenic 55.0%
!! TGCCTTGGGGGCTCTAGATT+GGG - chr5_4:45837871-45837890 Msa0853820:five_prime_UTR 55.0%
GACGTGACGTGCTTTCCTGA+CGG - chr5_4:45838516-45838535 Msa0853820:five_prime_UTR 55.0%
TGAAAGGAACCGGTGAGGAC+TGG - chr5_4:45838826-45838845 Msa0853820:five_prime_UTR 55.0%
GAAAGGAACCGGTGAGGACT+GGG - chr5_4:45838827-45838846 Msa0853820:five_prime_UTR 55.0%
AACAAAGGGAAGACCACCGG+TGG + chr5_4:45838957-45838976 None:intergenic 55.0%
GGAAGTCGGAGTCCTTCGCT+TGG + chr5_4:45830845-45830864 None:intergenic 60.0%
GGCCCACCCTTGTGTGTCAA+AGG + chr5_4:45833711-45833730 None:intergenic 60.0%
GGGTGGGCCCTACAAATGAC+GGG - chr5_4:45833722-45833741 Msa0853820:intron 60.0%
AGGACGGAACAGTGGAGGAC+TGG - chr5_4:45834304-45834323 Msa0853820:CDS 60.0%
!! GTGCCTTGGGGGCTCTAGAT+TGG - chr5_4:45837870-45837889 Msa0853820:five_prime_UTR 60.0%
! TGCCCAATCTAGAGCCCCCA+AGG + chr5_4:45837876-45837895 None:intergenic 60.0%
!! TTGGGGGCTCTAGATTGGGC+AGG - chr5_4:45837875-45837894 Msa0853820:five_prime_UTR 60.0%
AAAGGGAAGACCACCGGTGG+TGG + chr5_4:45838954-45838973 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 45830097 45839243 45830097 ID=Msa0853820;Name=Msa0853820
chr5_4 mRNA 45830097 45839243 45830097 ID=Msa0853820-mRNA-1;Parent=Msa0853820;Name=Msa0853820-mRNA-1;_AED=0.20;_eAED=0.20;_QI=3339|0.63|0.5|1|0.36|0.5|12|0|352
chr5_4 exon 45830097 45830245 45830097 ID=Msa0853820-mRNA-1:exon:14501;Parent=Msa0853820-mRNA-1
chr5_4 exon 45832528 45832600 45832528 ID=Msa0853820-mRNA-1:exon:14500;Parent=Msa0853820-mRNA-1
chr5_4 exon 45832706 45832899 45832706 ID=Msa0853820-mRNA-1:exon:14499;Parent=Msa0853820-mRNA-1
chr5_4 exon 45833067 45833107 45833067 ID=Msa0853820-mRNA-1:exon:14498;Parent=Msa0853820-mRNA-1
chr5_4 exon 45833975 45834101 45833975 ID=Msa0853820-mRNA-1:exon:14497;Parent=Msa0853820-mRNA-1
chr5_4 exon 45834191 45834408 45834191 ID=Msa0853820-mRNA-1:exon:14496;Parent=Msa0853820-mRNA-1
chr5_4 exon 45834419 45834446 45834419 ID=Msa0853820-mRNA-1:exon:14495;Parent=Msa0853820-mRNA-1
chr5_4 exon 45834739 45834805 45834739 ID=Msa0853820-mRNA-1:exon:14494;Parent=Msa0853820-mRNA-1
chr5_4 exon 45834895 45835075 45834895 ID=Msa0853820-mRNA-1:exon:14493;Parent=Msa0853820-mRNA-1
chr5_4 exon 45835744 45835822 45835744 ID=Msa0853820-mRNA-1:exon:14492;Parent=Msa0853820-mRNA-1
chr5_4 exon 45835937 45836198 45835937 ID=Msa0853820-mRNA-1:exon:14491;Parent=Msa0853820-mRNA-1
chr5_4 exon 45836268 45839243 45836268 ID=Msa0853820-mRNA-1:exon:14490;Parent=Msa0853820-mRNA-1
chr5_4 five_prime_UTR 45836268 45839243 45836268 ID=Msa0853820-mRNA-1:five_prime_utr;Parent=Msa0853820-mRNA-1
chr5_4 five_prime_UTR 45835937 45836198 45835937 ID=Msa0853820-mRNA-1:five_prime_utr;Parent=Msa0853820-mRNA-1
chr5_4 five_prime_UTR 45835744 45835822 45835744 ID=Msa0853820-mRNA-1:five_prime_utr;Parent=Msa0853820-mRNA-1
chr5_4 five_prime_UTR 45835054 45835075 45835054 ID=Msa0853820-mRNA-1:five_prime_utr;Parent=Msa0853820-mRNA-1
chr5_4 CDS 45834895 45835053 45834895 ID=Msa0853820-mRNA-1:cds;Parent=Msa0853820-mRNA-1
chr5_4 CDS 45834739 45834805 45834739 ID=Msa0853820-mRNA-1:cds;Parent=Msa0853820-mRNA-1
chr5_4 CDS 45834419 45834446 45834419 ID=Msa0853820-mRNA-1:cds;Parent=Msa0853820-mRNA-1
chr5_4 CDS 45834191 45834408 45834191 ID=Msa0853820-mRNA-1:cds;Parent=Msa0853820-mRNA-1
chr5_4 CDS 45833975 45834101 45833975 ID=Msa0853820-mRNA-1:cds;Parent=Msa0853820-mRNA-1
chr5_4 CDS 45833067 45833107 45833067 ID=Msa0853820-mRNA-1:cds;Parent=Msa0853820-mRNA-1
chr5_4 CDS 45832706 45832899 45832706 ID=Msa0853820-mRNA-1:cds;Parent=Msa0853820-mRNA-1
chr5_4 CDS 45832528 45832600 45832528 ID=Msa0853820-mRNA-1:cds;Parent=Msa0853820-mRNA-1
chr5_4 CDS 45830097 45830245 45830097 ID=Msa0853820-mRNA-1:cds;Parent=Msa0853820-mRNA-1
Gene Sequence

>Msa0853820

ATGAGAAGAGCAATGCAAGGACGGAACAGTGGAGGACTGGAACAAGATAGCACATATTCCGAACTTACACTTTTGGTGATGCTTTTATGTTCTATAGGAATCAAGAAGCATAGATATTGGTGTTTCTGCTTCTGGCTTGTCACATTTCCGACTAAACTTGATTTGACACTCCTGTTTTTTCACTATGGTCTCCTAGTTATGTTAGTTTCTCTTTGGTCTTTCATAGGAACCACTTGTTACATAGTTGTTAAAACTGAGGGAAGCCAAGATCAACATGTGTGTAATACTCCGGGTAAAATTATCATCGACATCAATAACAATCTAGAGCATTTTGTCAAAACCAATGCATATTATGATTCTCGTGTGTTGGTAAATATTGTTAGAAATGAGGCCCTGTGTTCGGCATTGTTGCTTACCAAAGGGAGCAATGTGATGCTTAGCATGTTACCAACCAAAGACAGAAAATCTGCAGATATGTTGTGGAATGCTGCTGAATCCCAACCATGTTTGTGTCGGACAATGTTAATTGATCAATTTGTGTCCACTGCTTTTCCTGAAAGCAAGAGGATGCTTCAGCTGAACCACAGAAACTATAAGAGGAATCACTTGCTTTCTCAGTTTTTGTGTGGAATGTCTACGGACATATTGTGGAACATATGGAGAAGATCTGTAATGAAAGTTTTTATGATTGCTGAAGTTCCCCATGAGTTGGTTGAGCTTCTACAAAATACAACACAATTATGCTTTTATTTGAAACTTCAACCTGCTATGTTTGGTAAAAGTTCACTCGACTCCATATCTCAAAATATTCAGCTTTTCGTGGATGATCCAAATGTGATGGACTTTCAAGTAAGAAATGTTTATGGAAGAGTTGGCAGTTCAAGTTTAATCAGCGGAAACACCAATAGATATGACACTCTTGACTCTTCACTATGGTTTTGCAGCACATGTTCTGATTTTTCAATGGGAGAGAAAAACGGCCATCTAAAATCTGTCTTAGAGCCTTATAATGCCTTGTTAGCATATAAATTTTTCATTCAGTTTTGTTTCTCAATG
Protein sequence

>Msa0853820

MRRAMQGRNSGGLEQDSTYSELTLLVMLLCSIGIKKHRYWCFCFWLVTFPTKLDLTLLFFHYGLLVMLVSLWSFIGTTCYIVVKTEGSQDQHVCNTPGKIIIDINNNLEHFVKTNAYYDSRVLVNIVRNEALCSALLLTKGSNVMLSMLPTKDRKSADMLWNAAESQPCLCRTMLIDQFVSTAFPESKRMLQLNHRNYKRNHLLSQFLCGMSTDILWNIWRRSVMKVFMIAEVPHELVELLQNTTQLCFYLKLQPAMFGKSSLDSISQNIQLFVDDPNVMDFQVRNVYGRVGSSSLISGNTNRYDTLDSSLWFCSTCSDFSMGEKNGHLKSVLEPYNALLAYKFFIQFCFSM