AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0813730

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0813730 MtrunA17_Chr5g0431441 95.595 454 19 1 12 464 18 471 0.0 895
Msa0813730 MtrunA17_Chr3g0106231 54.371 469 183 11 1 459 5 452 8.17e-175 499
Msa0813730 MtrunA17_Chr5g0431361 52.000 450 205 7 12 458 12 453 6.41e-159 457
Msa0813730 MtrunA17_Chr5g0431421 49.780 454 208 9 12 459 10 449 1.42e-150 436
Msa0813730 MtrunA17_Chr5g0431371 50.328 457 199 10 12 458 10 448 2.90e-149 432
Msa0813730 MtrunA17_Chr5g0431401 49.015 457 205 9 12 458 10 448 1.34e-147 428
Msa0813730 MtrunA17_Chr5g0431431 48.810 420 144 7 5 422 3 353 6.39e-135 393
Msa0813730 MtrunA17_Chr5g0432731 56.040 298 128 2 165 460 2 298 8.71e-120 352
Msa0813730 MtrunA17_Chr3g0106251 56.849 292 122 3 168 459 7 294 2.70e-117 346
Msa0813730 MtrunA17_Chr8g0359821 32.245 490 279 17 12 464 10 483 8.45e-64 214
Msa0813730 MtrunA17_Chr6g0454401 31.034 493 274 17 12 459 10 481 1.10e-63 213
Msa0813730 MtrunA17_Chr2g0278711 31.656 477 287 15 12 459 11 477 6.73e-63 211
Msa0813730 MtrunA17_Chr6g0454191 31.340 485 283 16 12 459 10 481 1.33e-62 211
Msa0813730 MtrunA17_Chr6g0454331 31.772 491 284 16 12 464 7 484 5.09e-62 209
Msa0813730 MtrunA17_Chr8g0380531 31.545 466 282 13 12 458 10 457 2.38e-61 207
Msa0813730 MtrunA17_Chr3g0078841 31.276 486 279 17 12 459 10 478 3.60e-61 207
Msa0813730 MtrunA17_Chr6g0454291 32.231 484 279 16 12 459 7 477 1.29e-60 205
Msa0813730 MtrunA17_Chr6g0452771 31.098 492 274 16 12 459 10 480 4.01e-60 204
Msa0813730 MtrunA17_Chr6g0454341 30.864 486 281 17 12 459 10 478 4.73e-60 204
Msa0813730 MtrunA17_Chr3g0118691 30.894 492 287 15 9 460 6 484 8.39e-60 203
Msa0813730 MtrunA17_Chr5g0426431 31.546 485 279 19 11 459 11 478 1.37e-59 202
Msa0813730 MtrunA17_Chr6g0454121 31.557 488 276 17 12 459 10 479 1.91e-59 202
Msa0813730 MtrunA17_Chr6g0453951 30.785 484 286 15 12 459 57 527 2.54e-59 203
Msa0813730 MtrunA17_Chr7g0217881 32.150 479 268 15 12 459 10 462 6.32e-59 200
Msa0813730 MtrunA17_Chr6g0454131 31.967 488 274 17 12 459 10 479 9.96e-59 200
Msa0813730 MtrunA17_Chr3g0092641 30.705 482 285 17 12 459 12 478 1.11e-58 200
Msa0813730 MtrunA17_Chr3g0112771 29.654 462 288 8 13 459 13 452 1.31e-58 199
Msa0813730 MtrunA17_Chr6g0454141 29.424 486 290 16 12 459 10 480 1.84e-58 199
Msa0813730 MtrunA17_Chr6g0464881 29.810 473 289 15 12 464 11 460 2.13e-58 199
Msa0813730 MtrunA17_Chr6g0454261 29.388 490 295 15 12 464 10 485 2.58e-58 199
Msa0813730 MtrunA17_Chr3g0118771 30.228 483 290 14 12 460 21 490 2.76e-58 199
Msa0813730 MtrunA17_Chr6g0454351 30.146 481 276 15 12 459 12 465 3.28e-58 199
Msa0813730 MtrunA17_Chr3g0118671 30.290 482 289 15 12 459 6 474 4.79e-58 198
Msa0813730 MtrunA17_Chr6g0454181 30.992 484 285 15 12 459 10 480 5.07e-58 198
Msa0813730 MtrunA17_Chr7g0250001 29.550 467 288 15 12 460 6 449 1.26e-57 197
Msa0813730 MtrunA17_Chr6g0454151 31.263 483 283 17 12 459 10 478 1.95e-57 197
Msa0813730 MtrunA17_Chr6g0454361 29.691 485 290 13 12 459 11 481 2.14e-57 197
Msa0813730 MtrunA17_Chr6g0453961 30.123 488 291 14 9 459 16 490 2.65e-57 197
Msa0813730 MtrunA17_Chr5g0414331 30.851 470 267 17 12 455 13 450 5.06e-57 195
Msa0813730 MtrunA17_Chr3g0118711 28.717 491 303 12 4 460 5 482 1.87e-56 194
Msa0813730 MtrunA17_Chr6g0464921 29.684 475 276 17 12 458 11 455 3.11e-56 193
Msa0813730 MtrunA17_Chr3g0118701 29.675 492 293 14 9 460 6 484 3.76e-56 194
Msa0813730 MtrunA17_Chr6g0454201 30.864 486 283 16 12 459 11 481 5.35e-56 193
Msa0813730 MtrunA17_Chr8g0336331 29.072 485 292 16 11 459 9 477 1.51e-55 192
Msa0813730 MtrunA17_Chr6g0454211 32.033 487 286 15 12 464 297 772 1.86e-55 197
Msa0813730 MtrunA17_Chr6g0454211 28.413 271 149 9 122 376 3 244 4.82e-24 105
Msa0813730 MtrunA17_Chr8g0377921 30.105 475 289 13 13 459 5 464 2.58e-55 191
Msa0813730 MtrunA17_Chr6g0454301 30.309 485 285 16 12 459 263 731 2.60e-55 196
Msa0813730 MtrunA17_Chr6g0454301 35.217 230 128 5 239 455 5 226 2.25e-35 139
Msa0813730 MtrunA17_Chr6g0464861 29.237 472 280 12 12 458 11 453 3.21e-55 190
Msa0813730 MtrunA17_Chr7g0249981 30.213 470 281 15 12 460 25 468 5.73e-55 191
Msa0813730 MtrunA17_Chr5g0432741 58.333 156 63 2 7 162 5 158 1.23e-54 180
Msa0813730 MtrunA17_Chr4g0050341 29.293 495 290 16 1 455 13 487 2.01e-54 189
Msa0813730 MtrunA17_Chr3g0112761 27.957 465 298 8 11 459 7 450 3.29e-54 187
Msa0813730 MtrunA17_Chr5g0414321 29.668 482 275 18 12 464 11 457 5.38e-54 187
Msa0813730 MtrunA17_Chr8g0377941 30.000 490 271 13 13 462 8 465 1.26e-53 186
Msa0813730 MtrunA17_Chr1g0207981 29.209 493 278 17 9 459 10 473 3.35e-53 186
Msa0813730 MtrunA17_Chr7g0249931 28.838 482 296 17 1 460 29 485 3.71e-53 186
Msa0813730 MtrunA17_Chr6g0454321 29.787 470 277 16 12 444 10 463 6.49e-53 188
Msa0813730 MtrunA17_Chr4g0053321 29.598 473 296 14 9 459 23 480 7.70e-53 185
Msa0813730 MtrunA17_Chr6g0464871 28.970 466 292 15 11 458 22 466 8.01e-53 184
Msa0813730 MtrunA17_Chr6g0464841 29.060 468 291 14 10 458 9 454 2.92e-52 182
Msa0813730 MtrunA17_Chr7g0232411 30.526 475 277 15 10 451 4 458 3.15e-52 182
Msa0813730 MtrunA17_Chr3g0118751 29.810 473 276 13 12 460 6 446 1.85e-51 180
Msa0813730 MtrunA17_Chr3g0121991 29.577 497 270 18 12 458 79 545 1.98e-51 182
Msa0813730 MtrunA17_Chr4g0032331 30.149 471 276 13 13 459 9 450 3.78e-51 179
Msa0813730 MtrunA17_Chr4g0053501 28.270 474 295 16 12 459 11 465 6.51e-51 180
Msa0813730 MtrunA17_Chr3g0098111 29.560 477 290 15 12 458 9 469 2.56e-50 178
Msa0813730 MtrunA17_Chr3g0118661 28.482 481 300 15 12 460 13 481 2.87e-50 178
Msa0813730 MtrunA17_Chr7g0265051 28.629 496 301 13 9 463 6 489 3.96e-50 178
Msa0813730 MtrunA17_Chr5g0423981 30.962 478 264 19 9 459 7 445 4.49e-50 176
Msa0813730 MtrunA17_Chr5g0448521 26.860 484 298 11 13 460 6 469 3.19e-49 174
Msa0813730 MtrunA17_Chr1g0207971 29.741 464 295 14 10 458 6 453 3.92e-49 174
Msa0813730 MtrunA17_Chr7g0232391 29.630 486 267 16 10 451 4 458 1.43e-48 173
Msa0813730 MtrunA17_Chr7g0265101 28.317 505 293 16 9 463 6 491 1.90e-48 173
Msa0813730 MtrunA17_Chr3g0122001 30.103 485 284 20 12 458 6 473 2.01e-48 178
Msa0813730 MtrunA17_Chr3g0122001 28.571 483 293 18 12 458 486 952 1.81e-46 172
Msa0813730 MtrunA17_Chr7g0243631 29.730 481 283 17 12 451 13 479 4.23e-48 172
Msa0813730 MtrunA17_Chr7g0243681 28.125 480 301 14 12 458 11 479 6.21e-48 172
Msa0813730 MtrunA17_Chr7g0232331 30.000 480 266 18 10 447 4 455 1.04e-47 171
Msa0813730 MtrunA17_Chr5g0412111 28.178 472 303 14 10 458 3 461 1.19e-47 170
Msa0813730 MtrunA17_Chr7g0218811 28.132 455 293 10 12 455 15 446 2.40e-47 169
Msa0813730 MtrunA17_Chr5g0401721 27.083 480 304 14 13 461 9 473 3.78e-47 169
Msa0813730 MtrunA17_Chr7g0218831 28.976 459 283 13 12 455 6 436 4.17e-47 168
Msa0813730 MtrunA17_Chr8g0365811 27.883 477 298 13 13 458 496 957 2.18e-46 172
Msa0813730 MtrunA17_Chr8g0365811 30.470 489 276 16 12 458 9 475 5.08e-43 162
Msa0813730 MtrunA17_Chr1g0207951 30.063 479 271 14 12 455 656 1105 2.77e-46 172
Msa0813730 MtrunA17_Chr1g0207951 28.690 481 284 17 12 462 124 575 4.33e-45 169
Msa0813730 MtrunA17_Chr7g0232341 29.167 480 270 17 10 447 4 455 3.57e-46 166
Msa0813730 MtrunA17_Chr3g0106241 58.824 136 45 4 11 143 17 144 3.96e-46 158
Msa0813730 MtrunA17_Chr8g0373301 30.882 476 266 15 9 447 6 455 4.76e-46 166
Msa0813730 MtrunA17_Chr8g0361371 27.651 481 293 12 11 455 6 467 1.19e-45 165
Msa0813730 MtrunA17_Chr1g0207861 28.151 476 300 14 11 458 7 468 1.83e-45 165
Msa0813730 MtrunA17_Chr8g0336691 28.033 478 286 15 10 451 917 1372 1.93e-45 170
Msa0813730 MtrunA17_Chr8g0336691 28.782 476 285 13 10 451 11 466 1.95e-44 167
Msa0813730 MtrunA17_Chr8g0336691 28.097 452 291 12 10 451 478 905 1.81e-41 158
Msa0813730 MtrunA17_Chr7g0275511 29.039 489 281 14 2 451 7 468 3.95e-45 164
Msa0813730 MtrunA17_Chr7g0218841 28.879 464 278 15 12 455 6 437 4.37e-45 163
Msa0813730 MtrunA17_Chr7g0218791 29.095 464 277 16 12 451 5 440 5.23e-45 162
Msa0813730 MtrunA17_Chr8g0336741 29.876 482 266 15 12 451 13 464 7.36e-45 163
Msa0813730 MtrunA17_Chr5g0412101 27.435 503 287 13 1 458 1 470 9.03e-45 162
Msa0813730 MtrunA17_Chr7g0243771 29.019 479 285 16 12 451 6 468 2.31e-44 162
Msa0813730 MtrunA17_Chr8g0335161 29.508 488 270 17 11 454 5 462 3.05e-44 161
Msa0813730 MtrunA17_Chr8g0336651 28.151 476 290 12 10 451 779 1236 4.35e-44 166
Msa0813730 MtrunA17_Chr8g0336651 29.132 484 271 15 10 451 4 457 1.90e-40 155
Msa0813730 MtrunA17_Chr8g0336651 34.127 252 143 6 203 451 536 767 1.38e-33 134
Msa0813730 MtrunA17_Chr7g0243871 27.824 478 294 15 12 455 9 469 4.39e-44 161
Msa0813730 MtrunA17_Chr1g0153451 28.660 485 271 15 10 451 4 456 5.49e-44 160
Msa0813730 MtrunA17_Chr7g0232401 28.450 471 286 13 10 447 4 456 6.08e-44 160
Msa0813730 MtrunA17_Chr4g0011051 27.935 494 302 15 9 459 6 488 7.90e-44 160
Msa0813730 MtrunA17_Chr1g0207831 28.662 471 295 13 13 458 9 463 8.47e-44 160
Msa0813730 MtrunA17_Chr8g0335141 29.424 486 268 19 13 454 10 464 1.11e-43 159
Msa0813730 MtrunA17_Chr8g0347281 28.033 478 274 15 13 451 19 465 1.89e-43 159
Msa0813730 MtrunA17_Chr7g0243931 28.423 482 288 16 12 451 17 483 3.97e-43 159
Msa0813730 MtrunA17_Chr4g0044511 28.337 487 287 17 12 458 40 504 4.51e-43 159
Msa0813730 MtrunA17_Chr5g0412131 26.722 479 298 11 12 458 12 469 4.68e-43 158
Msa0813730 MtrunA17_Chr6g0454251 29.923 391 237 10 12 368 7 394 5.27e-43 156
Msa0813730 MtrunA17_Chr8g0355011 29.082 392 206 8 98 464 23 367 5.95e-43 155
Msa0813730 MtrunA17_Chr7g0243951 28.008 482 289 16 12 451 11 476 6.13e-43 158
Msa0813730 MtrunA17_Chr8g0347271 28.125 480 271 16 13 451 20 466 1.04e-42 157
Msa0813730 MtrunA17_Chr1g0179901 27.668 506 283 17 12 460 16 495 3.47e-42 156
Msa0813730 MtrunA17_Chr7g0265151 27.000 500 305 15 9 464 6 489 3.91e-42 155
Msa0813730 MtrunA17_Chr5g0429711 29.310 464 278 19 11 447 10 450 5.07e-42 155
Msa0813730 MtrunA17_Chr1g0161351 27.235 481 304 15 8 458 33 497 1.30e-41 154
Msa0813730 MtrunA17_Chr7g0275681 27.163 497 286 16 12 459 12 481 1.32e-41 154
Msa0813730 MtrunA17_Chr7g0243801 28.482 481 285 16 12 451 7 469 2.12e-41 154
Msa0813730 MtrunA17_Chr7g0265041 27.400 500 292 17 12 460 11 490 2.38e-41 154
Msa0813730 MtrunA17_Chr7g0235051 27.673 477 267 14 12 451 11 446 2.99e-41 153
Msa0813730 MtrunA17_Chr5g0419771 27.559 508 280 16 12 460 36 514 3.24e-41 154
Msa0813730 MtrunA17_Chr8g0334831 27.419 496 284 14 11 455 5 475 5.50e-41 152
Msa0813730 MtrunA17_Chr5g0442491 26.389 504 286 15 11 460 4 476 1.35e-40 151
Msa0813730 MtrunA17_Chr6g0459311 27.443 481 287 14 11 454 12 467 1.96e-40 151
Msa0813730 MtrunA17_Chr8g0366391 27.789 493 280 16 12 455 9 474 4.01e-40 150
Msa0813730 MtrunA17_Chr7g0218821 28.205 468 287 14 12 455 5 447 5.62e-40 149
Msa0813730 MtrunA17_Chr1g0159551 26.923 468 289 15 17 458 19 459 8.37e-40 149
Msa0813730 MtrunA17_Chr6g0462531 27.660 470 284 15 13 447 5 453 1.08e-39 149
Msa0813730 MtrunA17_Chr3g0118721 33.208 265 154 6 211 460 35 291 1.60e-39 144
Msa0813730 MtrunA17_Chr7g0232311 34.304 309 150 9 175 451 169 456 1.71e-39 148
Msa0813730 MtrunA17_Chr7g0243781 27.327 505 271 17 12 458 9 475 1.90e-39 148
Msa0813730 MtrunA17_Chr8g0339451 31.378 392 207 13 102 454 91 459 2.69e-39 147
Msa0813730 MtrunA17_Chr5g0442521 26.113 494 297 17 13 460 6 477 2.80e-39 148
Msa0813730 MtrunA17_Chr4g0060511 27.292 480 299 14 12 451 11 480 3.64e-39 148
Msa0813730 MtrunA17_Chr8g0339631 28.454 485 283 15 10 454 4 464 4.53e-39 147
Msa0813730 MtrunA17_Chr8g0339461 31.429 385 207 14 112 459 111 475 5.24e-39 147
Msa0813730 MtrunA17_Chr5g0419761 25.948 501 295 14 12 459 9 486 6.44e-39 147
Msa0813730 MtrunA17_Chr6g0449931 27.824 478 286 14 11 451 5 460 7.83e-39 146
Msa0813730 MtrunA17_Chr2g0302991 25.410 488 287 15 12 455 5 459 1.37e-38 145
Msa0813730 MtrunA17_Chr2g0302961 26.240 484 291 15 12 455 5 462 1.60e-38 145
Msa0813730 MtrunA17_Chr1g0173121 27.766 479 282 17 13 458 15 462 2.02e-38 145
Msa0813730 MtrunA17_Chr6g0462571 26.250 480 289 15 13 454 5 457 2.41e-38 145
Msa0813730 MtrunA17_Chr4g0044501 27.327 505 297 17 1 460 1 480 2.99e-38 145
Msa0813730 MtrunA17_Chr7g0243861 27.557 479 296 13 12 451 14 480 3.43e-38 145
Msa0813730 MtrunA17_Chr3g0079731 26.273 491 292 17 10 451 4 473 3.52e-38 145
Msa0813730 MtrunA17_Chr5g0442581 26.523 509 281 16 11 460 4 478 9.14e-38 144
Msa0813730 MtrunA17_Chr6g0486251 27.066 484 285 16 11 454 5 460 9.88e-38 143
Msa0813730 MtrunA17_Chr6g0486201 27.066 484 285 16 11 454 5 460 9.88e-38 143
Msa0813730 MtrunA17_Chr7g0249961 36.481 233 125 7 242 460 38 261 1.02e-37 139
Msa0813730 MtrunA17_Chr8g0336731 28.033 478 284 13 14 455 34 487 1.07e-37 144
Msa0813730 MtrunA17_Chr8g0339601 34.824 313 156 11 175 454 29 326 1.82e-37 139
Msa0813730 MtrunA17_Chr5g0442561 24.900 498 293 14 11 459 4 469 2.25e-37 142
Msa0813730 MtrunA17_Chr6g0454271 30.405 296 179 8 180 459 3 287 2.72e-37 138
Msa0813730 MtrunA17_Chr4g0014061 24.744 489 302 12 13 460 10 473 1.18e-36 140
Msa0813730 MtrunA17_Chr4g0066151 26.899 487 289 17 13 458 19 479 2.47e-36 140
Msa0813730 MtrunA17_Chr5g0429681 27.291 491 287 20 11 462 43 502 4.34e-36 139
Msa0813730 MtrunA17_Chr7g0265141 25.761 493 298 17 12 455 9 482 4.47e-36 139
Msa0813730 MtrunA17_Chr4g0066201 26.446 484 288 15 16 460 22 476 4.65e-36 139
Msa0813730 MtrunA17_Chr6g0462551 24.689 482 297 12 13 454 5 460 5.11e-36 139
Msa0813730 MtrunA17_Chr8g0370941 27.016 496 286 18 11 451 7 481 5.80e-36 139
Msa0813730 MtrunA17_Chr6g0462541 26.709 468 300 13 13 452 5 457 6.40e-36 138
Msa0813730 MtrunA17_Chr8g0361411 27.848 474 287 15 9 455 5 450 7.64e-36 138
Msa0813730 MtrunA17_Chr4g0066221 26.025 488 294 19 16 458 15 480 9.69e-36 138
Msa0813730 MtrunA17_Chr5g0442601 24.131 489 314 12 13 460 405 877 1.19e-35 140
Msa0813730 MtrunA17_Chr5g0442601 33.775 151 78 2 266 394 187 337 2.67e-19 91.3
Msa0813730 MtrunA17_Chr7g0265111 26.316 494 310 16 12 463 39 520 1.19e-35 139
Msa0813730 MtrunA17_Chr6g0462521 26.681 461 286 14 13 447 5 439 1.67e-35 137
Msa0813730 MtrunA17_Chr5g0442541 25.880 483 304 13 11 459 4 466 2.62e-35 136
Msa0813730 MtrunA17_Chr6g0454171 28.691 359 180 12 124 459 5 310 3.70e-35 133
Msa0813730 MtrunA17_Chr2g0307961 25.355 493 303 15 4 459 5 469 6.04e-35 135
Msa0813730 MtrunA17_Chr6g0454221 34.802 227 126 5 239 451 5 223 6.34e-35 132
Msa0813730 MtrunA17_Chr5g0426401 29.582 311 186 10 169 459 14 311 7.45e-35 132
Msa0813730 MtrunA17_Chr5g0448551 25.684 475 303 15 13 463 8 456 7.80e-35 135
Msa0813730 MtrunA17_Chr1g0207931 33.463 257 155 4 215 458 244 497 1.17e-34 135
Msa0813730 MtrunA17_Chr4g0042891 27.536 483 288 20 10 455 5 462 2.42e-34 134
Msa0813730 MtrunA17_Chr4g0066281 25.934 482 287 16 16 458 16 466 6.99e-34 132
Msa0813730 MtrunA17_Chr8g0374901 25.203 492 290 20 16 458 16 478 8.32e-34 132
Msa0813730 MtrunA17_Chr8g0374941 26.772 381 228 11 111 458 1055 1417 1.67e-33 134
Msa0813730 MtrunA17_Chr8g0374941 25.824 364 219 11 111 441 117 462 3.98e-28 118
Msa0813730 MtrunA17_Chr8g0374941 24.894 470 285 17 16 440 480 926 6.23e-28 117
Msa0813730 MtrunA17_Chr4g0066171 26.240 484 284 17 16 458 25 476 1.78e-33 132
Msa0813730 MtrunA17_Chr5g0393591 25.000 468 281 11 12 458 17 435 3.67e-33 130
Msa0813730 MtrunA17_Chr5g0403641 25.826 484 268 14 12 451 59 495 6.26e-33 130
Msa0813730 MtrunA17_Chr8g0339441 36.620 213 104 5 268 454 218 425 9.48e-33 129
Msa0813730 MtrunA17_Chr5g0431391 43.396 159 56 4 5 163 34 158 1.21e-32 124
Msa0813730 MtrunA17_Chr8g0382021 26.465 495 266 18 17 458 39 488 1.73e-32 129
Msa0813730 MtrunA17_Chr7g0243761 25.873 487 278 16 12 458 11 454 2.01e-32 128
Msa0813730 MtrunA17_Chr5g0440421 25.146 513 293 17 12 460 10 495 2.75e-32 128
Msa0813730 MtrunA17_Chr8g0355221 25.417 480 307 17 14 455 17 483 2.85e-32 128
Msa0813730 MtrunA17_Chr5g0420801 25.212 472 304 15 11 455 6 455 3.90e-32 127
Msa0813730 MtrunA17_Chr5g0428081 27.066 484 287 18 16 455 15 476 5.44e-32 127
Msa0813730 MtrunA17_Chr8g0336251 25.390 449 295 11 10 432 5 439 5.75e-32 127
Msa0813730 MtrunA17_Chr8g0374971 26.385 379 232 11 111 458 118 480 6.49e-32 127
Msa0813730 MtrunA17_Chr7g0243711 34.000 250 123 7 240 451 64 309 6.98e-32 124
Msa0813730 MtrunA17_Chr8g0336321 25.390 449 295 11 10 432 5 439 7.12e-32 127
Msa0813730 MtrunA17_Chr8g0334861 28.760 379 215 13 103 447 95 452 1.30e-31 126
Msa0813730 MtrunA17_Chr8g0369341 25.514 486 295 15 11 455 6 465 1.39e-31 126
Msa0813730 MtrunA17_Chr4g0042931 25.466 483 296 17 10 455 5 460 1.69e-31 125
Msa0813730 MtrunA17_Chr6g0463891 24.792 480 305 15 13 451 13 477 1.79e-31 126
Msa0813730 MtrunA17_Chr5g0401851 26.157 497 286 15 9 451 7 476 2.70e-31 125
Msa0813730 MtrunA17_Chr8g0367221 25.446 448 298 13 12 436 1288 1722 4.45e-31 127
Msa0813730 MtrunA17_Chr8g0367221 26.437 435 265 17 12 413 12 424 6.83e-27 114
Msa0813730 MtrunA17_Chr8g0367221 25.495 455 278 15 12 427 798 1230 2.98e-23 103
Msa0813730 MtrunA17_Chr4g0044521 31.164 292 156 10 192 455 189 463 5.25e-31 124
Msa0813730 MtrunA17_Chr8g0350881 27.778 378 228 11 111 458 118 480 7.45e-31 124
Msa0813730 MtrunA17_Chr1g0153461 33.023 215 112 5 265 454 1 208 7.83e-31 118
Msa0813730 MtrunA17_Chr8g0334851 27.215 474 288 16 11 447 5 458 1.14e-30 124
Msa0813730 MtrunA17_Chr6g0482061 24.845 483 305 16 10 452 9 473 1.83e-30 123
Msa0813730 MtrunA17_Chr7g0218311 36.449 214 111 5 262 451 264 476 2.83e-30 122
Msa0813730 MtrunA17_Chr4g0066261 34.101 217 118 5 266 458 266 481 7.61e-30 121
Msa0813730 MtrunA17_Chr2g0329111 23.722 489 308 17 13 455 7 476 7.76e-30 121
Msa0813730 MtrunA17_Chr2g0294931 26.337 486 290 18 16 455 15 478 1.06e-29 121
Msa0813730 MtrunA17_Chr4g0066131 25.364 481 298 16 13 455 14 471 2.01e-29 120
Msa0813730 MtrunA17_Chr7g0232351 27.621 391 235 13 10 368 4 378 2.54e-29 118
Msa0813730 MtrunA17_Chr7g0241781 25.682 440 279 15 8 436 5 407 3.22e-29 119
Msa0813730 MtrunA17_Chr5g0410941 25.458 491 290 19 16 458 27 489 3.49e-29 119
Msa0813730 MtrunA17_Chr7g0243851 32.184 261 150 7 216 451 177 435 4.86e-29 119
Msa0813730 MtrunA17_Chr5g0442511 24.224 483 294 13 11 458 48 493 6.94e-29 119
Msa0813730 MtrunA17_Chr6g0463851 25.051 487 302 16 16 458 15 482 1.05e-28 118
Msa0813730 MtrunA17_Chr1g0165701 24.008 479 312 17 14 455 17 480 9.36e-28 115
Msa0813730 MtrunA17_Chr5g0416741 29.851 268 144 7 216 451 221 476 1.94e-27 114
Msa0813730 MtrunA17_Chr4g0072771 21.730 474 305 13 12 455 25 462 2.07e-27 114
Msa0813730 MtrunA17_Chr2g0294921 25.826 484 295 18 16 455 164 627 2.75e-27 115
Msa0813730 MtrunA17_Chr7g0243911 36.364 198 104 5 264 441 18 213 5.68e-27 108
Msa0813730 MtrunA17_Chr6g0454371 32.961 179 103 3 290 459 1 171 9.45e-27 106
Msa0813730 MtrunA17_Chr1g0207881 24.565 460 251 16 12 458 8 384 2.29e-26 110
Msa0813730 MtrunA17_Chr2g0294941 27.642 369 210 12 110 441 14 362 2.45e-26 110
Msa0813730 MtrunA17_Chr5g0409591 24.224 483 281 14 10 433 2 458 2.52e-26 111
Msa0813730 MtrunA17_Chr6g0463861 23.859 482 305 18 16 458 15 473 5.96e-26 110
Msa0813730 MtrunA17_Chr2g0278721 24.270 445 302 15 12 436 15 444 9.96e-26 110
Msa0813730 MtrunA17_Chr2g0278721 23.144 458 294 18 12 433 517 952 1.17e-18 89.4
Msa0813730 MtrunA17_Chr4g0069611 23.583 441 305 14 12 436 15 439 1.31e-25 108
Msa0813730 MtrunA17_Chr2g0278741 24.670 454 289 15 12 436 97 526 1.46e-25 109
Msa0813730 MtrunA17_Chr8g0374931 23.711 485 304 17 16 455 15 478 2.50e-25 108
Msa0813730 MtrunA17_Chr4g0072761 22.796 465 308 15 12 455 15 449 4.44e-25 107
Msa0813730 MtrunA17_Chr7g0243611 30.705 241 143 6 193 409 56 296 7.26e-25 104
Msa0813730 MtrunA17_Chr7g0241801 26.457 446 268 18 8 436 5 407 1.16e-24 105
Msa0813730 MtrunA17_Chr7g0243811 28.134 359 201 12 60 397 59 381 1.13e-23 102
Msa0813730 MtrunA17_Chr4g0029131 23.982 442 301 11 12 435 12 436 1.77e-23 103
Msa0813730 MtrunA17_Chr5g0427571 31.224 237 142 5 212 432 42 273 4.71e-23 99.4
Msa0813730 MtrunA17_Chr8g0336261 35.211 142 77 2 290 422 1 136 6.28e-23 94.4
Msa0813730 MtrunA17_Chr4g0044481 25.532 423 222 14 10 390 25 396 6.39e-23 100
Msa0813730 MtrunA17_Chr6g0464091 24.283 453 294 16 12 436 18 449 6.74e-23 101
Msa0813730 MtrunA17_Chr3g0079711 32.967 182 95 5 294 451 3 181 6.11e-22 93.2
Msa0813730 MtrunA17_Chr1g0196851 23.661 448 298 11 12 435 49 476 6.30e-22 98.6
Msa0813730 MtrunA17_Chr2g0302851 23.789 454 288 18 12 436 16 440 6.82e-22 98.2
Msa0813730 MtrunA17_Chr6g0466831 23.729 472 310 16 10 458 16 460 1.26e-21 97.4
Msa0813730 MtrunA17_Chr4g0039881 24.036 441 283 15 22 436 2 416 1.00e-20 94.4
Msa0813730 MtrunA17_Chr7g0250021 27.358 318 201 12 10 314 10 310 1.04e-20 92.8
Msa0813730 MtrunA17_Chr6g0454231 27.344 256 143 8 209 459 2 219 2.39e-20 93.6
Msa0813730 MtrunA17_Chr6g0454231 30.890 191 113 7 12 185 250 438 9.37e-14 73.2
Msa0813730 MtrunA17_Chr7g0231631 27.481 262 144 8 216 451 11 252 6.06e-20 89.7
Msa0813730 MtrunA17_Chr6g0466841 22.318 466 324 14 10 458 16 460 7.75e-20 92.0
Msa0813730 MtrunA17_Chr8g0337381 34.646 127 76 3 329 454 1 121 4.15e-19 83.6
Msa0813730 MtrunA17_Chr6g0453981 32.367 207 121 7 122 314 3 204 6.80e-19 85.5
Msa0813730 MtrunA17_Chr5g0416821 25.405 370 215 11 114 451 126 466 7.04e-19 89.0
Msa0813730 MtrunA17_Chr4g0066141 32.704 159 89 5 316 458 195 351 4.46e-18 85.5
Msa0813730 MtrunA17_Chr3g0092031 30.857 175 109 5 270 436 6 176 5.77e-18 82.4
Msa0813730 MtrunA17_Chr2g0319801 24.837 459 289 19 8 436 4 436 6.92e-18 85.9
Msa0813730 MtrunA17_Chr4g0029151 24.779 452 285 16 12 435 20 444 1.02e-17 85.5
Msa0813730 MtrunA17_Chr2g0319731 24.781 456 293 18 8 436 21 453 3.36e-17 84.0
Msa0813730 MtrunA17_Chr4g0029161 23.488 430 290 12 12 435 12 408 1.61e-16 81.6
Msa0813730 MtrunA17_Chr4g0040711 24.686 239 160 4 209 436 207 436 2.09e-16 81.3
Msa0813730 MtrunA17_Chr5g0426411 32.317 164 100 6 12 165 12 174 2.30e-16 77.0
Msa0813730 MtrunA17_Chr8g0357361 28.899 218 121 6 203 397 50 256 9.90e-16 77.4
Msa0813730 MtrunA17_Chr4g0040691 25.979 281 170 9 178 436 172 436 1.85e-15 78.6
Msa0813730 MtrunA17_Chr2g0283041 21.379 435 295 15 12 421 7 419 1.71e-14 75.5
Msa0813730 MtrunA17_Chr6g0454281 32.796 186 103 8 12 177 10 193 6.55e-14 70.9
Msa0813730 MtrunA17_Chr6g0453941 27.363 201 132 5 126 314 59 257 1.36e-13 70.9
Msa0813730 MtrunA17_Chr2g0319761 23.542 463 288 20 9 436 5 436 1.55e-13 72.4
Msa0813730 MtrunA17_Chr8g0334841 34.965 143 83 5 175 315 1 135 6.91e-13 66.6
Msa0813730 MtrunA17_Chr2g0319751 22.198 455 300 18 9 434 482 911 5.79e-12 68.2
Msa0813730 MtrunA17_Chr2g0321331 26.190 252 118 7 196 436 51 245 9.17e-12 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0813730 AT2G30150.2 51.620 463 208 9 1 458 1 452 3.86e-162 466
Msa0813730 AT2G30150.1 51.902 447 200 8 16 458 1 436 1.70e-158 456
Msa0813730 AT2G30140.1 51.082 462 206 10 4 458 3 451 2.26e-153 444
Msa0813730 AT2G30140.2 51.082 462 205 10 4 458 3 450 4.83e-153 443
Msa0813730 AT2G36970.1 28.898 481 288 14 12 458 10 470 6.08e-63 212
Msa0813730 AT2G28080.1 30.128 468 286 11 16 459 22 472 1.33e-62 211
Msa0813730 AT1G22400.1 30.426 493 283 16 12 463 13 486 1.40e-62 211
Msa0813730 AT1G05675.1 29.424 469 283 11 11 455 5 449 2.70e-62 209
Msa0813730 AT1G05680.1 30.064 469 280 12 11 455 5 449 3.86e-62 209
Msa0813730 AT1G78270.1 31.458 480 286 17 12 459 13 481 7.93e-62 209
Msa0813730 AT1G22360.1 30.309 485 289 15 12 461 10 480 2.59e-61 207
Msa0813730 AT2G31750.1 30.882 476 275 15 11 459 7 455 1.54e-60 205
Msa0813730 AT2G31750.2 30.882 476 275 15 11 459 7 455 5.19e-60 204
Msa0813730 AT1G22380.1 31.481 486 282 16 12 461 13 483 1.47e-59 203
Msa0813730 AT4G01070.1 29.684 475 281 13 10 451 6 460 5.39e-59 201
Msa0813730 AT1G22340.1 30.470 489 280 17 12 459 13 482 1.28e-58 201
Msa0813730 AT2G43840.2 30.213 470 275 15 12 458 7 446 2.26e-58 199
Msa0813730 AT2G43840.1 30.213 470 275 15 12 458 7 446 3.23e-58 198
Msa0813730 AT3G46660.1 29.399 466 288 12 8 455 10 452 1.06e-56 194
Msa0813730 AT3G46670.1 29.741 464 287 12 8 455 5 445 3.31e-56 193
Msa0813730 AT4G15480.1 28.454 485 302 13 6 461 13 481 4.31e-56 194
Msa0813730 AT2G43820.1 30.323 465 281 13 12 458 7 446 6.50e-56 192
Msa0813730 AT1G22360.2 28.866 485 284 14 12 461 10 468 1.43e-55 192
Msa0813730 AT5G38040.1 29.004 462 275 13 20 458 18 449 6.46e-55 190
Msa0813730 AT3G21560.1 27.329 483 309 15 1 455 1 469 1.08e-54 190
Msa0813730 AT5G38010.1 28.541 466 292 10 12 458 10 453 2.51e-53 186
Msa0813730 AT1G22370.2 29.583 480 294 15 12 461 13 478 2.99e-53 186
Msa0813730 AT1G01420.1 29.436 479 276 15 10 451 6 459 7.92e-53 185
Msa0813730 AT1G01420.2 29.436 479 276 15 10 451 9 462 8.96e-53 185
Msa0813730 AT5G59580.1 28.664 464 289 12 12 458 9 447 3.56e-52 182
Msa0813730 AT5G05900.1 31.635 471 269 15 13 460 9 449 7.82e-52 181
Msa0813730 AT4G15490.1 29.079 478 301 16 7 459 3 467 1.24e-51 182
Msa0813730 AT2G31790.1 29.362 470 284 15 12 456 8 454 5.44e-51 179
Msa0813730 AT5G59590.1 27.623 467 293 10 11 458 9 449 6.62e-51 179
Msa0813730 AT4G15500.1 28.000 475 295 13 12 459 9 463 1.12e-50 179
Msa0813730 AT3G11340.1 29.032 465 283 12 13 459 10 445 4.05e-50 177
Msa0813730 AT1G24100.1 28.033 478 293 13 7 458 6 458 3.54e-49 174
Msa0813730 AT3G46680.1 28.726 463 286 15 12 455 9 446 9.00e-49 173
Msa0813730 AT4G15550.1 28.719 484 287 15 8 455 9 470 1.28e-48 173
Msa0813730 AT2G23250.1 29.759 457 274 15 21 458 7 435 1.75e-48 172
Msa0813730 AT1G05560.1 28.364 483 280 16 8 458 3 451 1.83e-48 173
Msa0813730 AT1G05560.2 28.364 483 280 16 8 458 53 501 2.93e-48 173
Msa0813730 AT2G36750.1 28.800 500 287 17 9 460 7 485 4.82e-48 172
Msa0813730 AT2G36800.1 28.514 498 287 16 12 460 12 489 4.87e-48 172
Msa0813730 AT1G10400.1 28.964 473 281 17 11 451 6 455 1.14e-47 171
Msa0813730 AT2G23260.1 27.983 461 303 13 11 458 9 453 1.83e-46 167
Msa0813730 AT2G26480.1 27.233 459 301 10 13 459 9 446 7.83e-46 166
Msa0813730 AT3G46650.1 27.571 457 277 11 13 454 11 428 9.48e-46 165
Msa0813730 AT5G05880.1 29.424 469 279 13 13 458 9 448 2.14e-45 164
Msa0813730 AT2G36780.1 26.459 514 282 18 9 460 11 490 2.18e-45 165
Msa0813730 AT3G46700.1 27.293 458 300 11 12 458 9 444 3.18e-45 164
Msa0813730 AT3G46720.1 29.464 448 283 12 13 451 10 433 4.24e-45 163
Msa0813730 AT4G15280.1 25.352 497 298 11 12 460 4 475 1.13e-44 163
Msa0813730 AT4G15280.2 25.352 497 298 11 12 460 36 507 2.23e-44 162
Msa0813730 AT3G02100.1 28.850 461 294 14 12 455 13 456 2.27e-44 162
Msa0813730 AT5G05870.1 29.598 473 281 10 12 458 8 454 4.18e-44 161
Msa0813730 AT1G05530.1 26.875 480 290 13 12 459 5 455 1.34e-43 159
Msa0813730 AT2G36790.1 28.169 497 308 16 2 460 4 489 3.20e-43 159
Msa0813730 AT1G01390.1 29.019 479 287 12 10 455 6 464 3.24e-43 159
Msa0813730 AT3G46690.1 28.289 456 289 15 12 451 9 442 5.49e-43 158
Msa0813730 AT1G01390.2 29.019 479 287 12 10 455 23 481 6.37e-43 158
Msa0813730 AT3G21790.1 25.806 496 298 15 12 458 4 478 8.11e-43 158
Msa0813730 AT3G21800.1 26.294 483 306 11 13 458 6 475 8.17e-43 158
Msa0813730 AT2G16890.2 28.834 489 276 22 12 458 9 467 1.65e-42 157
Msa0813730 AT5G05890.1 29.025 472 283 11 12 458 8 452 1.87e-42 156
Msa0813730 AT2G36770.1 26.772 508 294 17 9 463 11 493 3.10e-42 156
Msa0813730 AT2G29740.1 28.425 489 288 15 11 458 7 474 4.26e-42 155
Msa0813730 AT5G14860.1 27.893 484 296 16 12 458 8 475 4.53e-42 156
Msa0813730 AT3G21780.1 27.027 481 301 14 12 458 4 468 1.23e-41 154
Msa0813730 AT2G36760.1 25.889 506 295 16 9 460 11 490 1.31e-41 155
Msa0813730 AT3G21750.1 25.364 481 311 11 12 459 4 469 4.65e-41 153
Msa0813730 AT5G05860.1 28.387 465 289 11 13 459 10 448 8.59e-41 152
Msa0813730 AT3G21760.1 26.295 502 290 14 12 458 4 480 2.00e-40 151
Msa0813730 AT2G29730.1 25.205 488 298 15 11 459 4 463 5.41e-40 150
Msa0813730 AT2G15480.2 26.775 493 297 19 12 455 10 487 7.07e-40 150
Msa0813730 AT3G53160.1 26.200 500 301 19 12 463 8 487 3.12e-39 148
Msa0813730 AT2G15480.1 27.010 485 296 19 12 455 10 477 5.41e-39 147
Msa0813730 AT2G15490.3 27.366 486 293 18 12 455 7 474 5.90e-39 147
Msa0813730 AT3G55700.1 25.373 469 302 12 13 459 9 451 1.84e-38 145
Msa0813730 AT3G53150.1 25.904 498 310 14 12 459 22 510 2.74e-38 146
Msa0813730 AT4G34131.1 27.733 494 290 18 7 455 5 476 2.75e-38 145
Msa0813730 AT2G15490.1 27.198 489 293 18 12 455 7 477 2.76e-38 145
Msa0813730 AT2G29710.1 25.207 484 303 16 11 459 4 463 3.10e-38 145
Msa0813730 AT5G03490.1 28.330 473 279 19 5 449 14 454 1.06e-37 144
Msa0813730 AT5G26310.1 25.567 485 285 17 12 451 7 460 1.36e-37 143
Msa0813730 AT5G17050.1 23.602 483 321 13 1 460 1 458 1.61e-37 143
Msa0813730 AT2G16890.3 28.829 444 247 20 12 414 9 424 3.02e-37 141
Msa0813730 AT2G29750.1 27.403 489 298 16 11 461 7 476 6.49e-37 142
Msa0813730 AT3G55710.1 25.636 472 301 14 13 459 9 455 6.84e-37 141
Msa0813730 AT1G07250.1 30.791 354 208 12 126 459 137 473 7.25e-37 141
Msa0813730 AT1G07260.1 26.939 490 299 15 11 461 5 474 2.10e-36 140
Msa0813730 AT2G18570.1 27.443 481 282 13 12 451 5 459 3.90e-36 139
Msa0813730 AT4G15260.1 26.471 374 216 9 123 460 6 356 4.65e-36 137
Msa0813730 AT4G14090.1 26.667 465 295 16 12 455 13 452 7.64e-36 138
Msa0813730 AT3G50740.1 25.102 490 287 16 12 451 7 466 1.20e-33 132
Msa0813730 AT5G12890.1 28.427 496 284 20 8 455 6 478 1.62e-33 132
Msa0813730 AT4G34138.1 26.819 481 285 17 12 448 11 468 4.43e-33 131
Msa0813730 AT5G37950.1 26.994 326 215 7 58 368 26 343 1.58e-32 127
Msa0813730 AT4G36770.1 25.979 485 262 18 12 441 4 446 1.75e-32 129
Msa0813730 AT5G17040.1 22.845 464 316 11 11 459 4 440 2.39e-32 128
Msa0813730 AT5G66690.1 25.309 486 285 16 12 451 7 460 2.67e-32 129
Msa0813730 AT1G73880.1 25.259 483 311 15 5 459 7 467 3.66e-32 128
Msa0813730 AT2G18560.1 28.389 391 226 12 93 451 1 369 9.29e-32 125
Msa0813730 AT5G17030.1 23.125 480 326 14 1 460 1 457 3.03e-31 125
Msa0813730 AT5G37950.2 26.462 325 212 6 58 368 26 337 3.29e-31 123
Msa0813730 AT1G07240.1 32.103 271 155 8 209 459 215 476 1.52e-30 124
Msa0813730 AT1G22370.1 28.435 313 192 9 169 461 8 308 5.63e-30 119
Msa0813730 AT3G16520.3 26.526 475 293 16 13 455 6 456 6.27e-30 122
Msa0813730 AT4G01070.2 29.154 319 199 9 10 317 6 308 8.04e-30 119
Msa0813730 AT4G34135.1 26.327 490 293 15 12 455 11 478 1.37e-29 121
Msa0813730 AT1G30530.1 23.629 474 312 16 7 459 7 451 2.85e-29 119
Msa0813730 AT5G65550.1 23.476 443 296 13 7 423 4 429 9.50e-29 118
Msa0813730 AT3G22250.1 24.896 482 299 15 13 460 9 461 2.04e-28 117
Msa0813730 AT3G16520.2 28.293 410 245 14 13 390 6 398 9.64e-28 115
Msa0813730 AT3G16520.1 28.293 410 245 14 13 390 6 398 9.79e-28 115
Msa0813730 AT5G17040.2 27.243 301 194 7 169 459 53 338 4.50e-27 111
Msa0813730 AT5G49690.1 24.324 444 297 14 12 436 10 433 1.59e-26 112
Msa0813730 AT1G51210.1 24.615 455 290 18 4 433 6 432 9.71e-26 109
Msa0813730 AT1G06000.1 23.457 486 271 16 12 458 10 433 4.81e-22 98.6
Msa0813730 AT2G22590.1 21.538 455 306 16 12 436 15 448 3.49e-19 90.5
Msa0813730 AT5G53990.1 21.445 443 301 13 12 436 6 419 1.12e-16 82.4
Msa0813730 AT3G29630.1 22.989 435 277 15 12 414 6 414 1.65e-15 79.0
Msa0813730 AT1G64910.1 23.371 445 264 19 10 414 4 411 4.79e-14 74.3
Msa0813730 AT5G54010.1 21.968 437 297 15 12 429 6 417 5.89e-14 74.3
Msa0813730 AT4G27570.1 21.739 437 282 16 12 414 7 417 7.69e-13 70.9
Msa0813730 AT4G27560.1 21.510 437 283 15 12 414 7 417 3.76e-12 68.6
Msa0813730 AT5G54060.1 24.434 442 281 18 13 417 14 439 1.23e-11 67.0
Msa0813730 AT4G09500.2 20.358 447 307 15 9 436 3 419 3.81e-11 65.5

Find 149 sgRNAs with CRISPR-Local

Find 220 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTGCAAATATTTCCATTTA+TGG 0.028830 5_3:-44749336 None:intergenic
AATTGAATGTTGCTTTAAAA+TGG 0.193488 5_3:+44749251 Msa0813730:three_prime_UTR
CAATTGCACGTTGACATATT+TGG 0.193573 5_3:-44748932 None:intergenic
TAGGCTTGTTAGAAGATTTA+TGG 0.205219 5_3:+44748857 Msa0813730:CDS
TACATGATAGCTATTTGTTT+TGG 0.213058 5_3:+44747345 Msa0813730:CDS
TTGAACTTGATTATATAAAT+TGG 0.214972 5_3:+44748418 Msa0813730:CDS
TGAAGCTGTTATGACTAAAA+TGG 0.236354 5_3:+44747268 Msa0813730:CDS
AATGGTTGGTCCATCATTAT+TGG 0.246488 5_3:-44748741 None:intergenic
TTGATGTTGTTGTTTGGTTT+TGG 0.265612 5_3:-44747179 None:intergenic
TGAAATGAAATGAATTAAAA+AGG 0.277326 5_3:-44746908 None:intergenic
GTGGTGGGTGGAGGAGGATT+TGG 0.277697 5_3:-44747011 None:intergenic
AAAGATATTTGTGGGGAAAA+AGG 0.278339 5_3:+44748591 Msa0813730:CDS
GTAGCTAGTAAATCCATAAA+TGG 0.293423 5_3:+44749323 Msa0813730:three_prime_UTR
AGTGAAAGATAATGGAATTA+TGG 0.305044 5_3:-44746961 None:intergenic
CAATATATTACTCTATTGTT+TGG 0.309306 5_3:-44749015 None:intergenic
GTAGGTCCAATTGTGTAAAT+TGG 0.309840 5_3:-44748342 None:intergenic
TTGAGGCTCAATTTCATATA+TGG 0.312256 5_3:-44748286 None:intergenic
AACAAGGATGTTGGGGTTGT+TGG 0.318935 5_3:-44747108 None:intergenic
TCTATACCAATTTACACAAT+TGG 0.329382 5_3:+44748336 Msa0813730:CDS
TCATTCTATTCGGAGTTCTA+AGG 0.334265 5_3:+44749177 Msa0813730:three_prime_UTR
ATAATTGAGTTCATTCTATT+CGG 0.335743 5_3:+44749167 Msa0813730:three_prime_UTR
ATCTTTGCCTCGACCTTCTT+CGG 0.344761 5_3:-44747231 None:intergenic
TGTTAGAAGATTTATGGATT+TGG 0.355476 5_3:+44748863 Msa0813730:CDS
AACTAACCTGAAGCATTTAC+TGG 0.357766 5_3:-44747482 None:intergenic
AAACGTGTGGATTACATTCC+GGG 0.361089 5_3:+44748138 Msa0813730:CDS
ATTTGGCCGTGACTAAAATA+AGG 0.365609 5_3:-44748369 None:intergenic
TCTTCGGAGGGAATAACGTT+TGG 0.366691 5_3:-44747215 None:intergenic
ATGGATGTAAATCTGTTAGA+TGG 0.371782 5_3:+44749270 Msa0813730:three_prime_UTR
CAAACGTGTGGATTACATTC+CGG 0.374925 5_3:+44748137 Msa0813730:CDS
ATGTTCCTGTTGCGTCGTTT+TGG 0.382125 5_3:+44747393 Msa0813730:CDS
TATAATCAAGTTCAACATCT+TGG 0.382409 5_3:-44748410 None:intergenic
GCGAATTTGATGTTGTTGTT+TGG 0.382887 5_3:-44747185 None:intergenic
AGGATTGGAAGGTTGGGTGG+AGG 0.383299 5_3:+44748784 Msa0813730:CDS
GAAAATGAATTCTAAGTAGA+AGG 0.387149 5_3:-44749064 None:intergenic
GATTACCCAGTAAATGCTTC+AGG 0.389628 5_3:+44747476 Msa0813730:CDS
TGGTGCTTAGAGAGGCAATT+TGG 0.392268 5_3:-44748386 None:intergenic
ACTTGGAGAGTGAAAGATAA+TGG 0.392453 5_3:-44746969 None:intergenic
TGCTTTCTTCATCCATGGTA+TGG 0.395710 5_3:-44748244 None:intergenic
CTTCGGAGGGAATAACGTTT+GGG 0.396861 5_3:-44747214 None:intergenic
TCTTAAACATTATCGTCGTT+TGG 0.398240 5_3:+44747442 Msa0813730:CDS
ATAGTTGAGGATTGGAAGGT+TGG 0.402228 5_3:+44748777 Msa0813730:CDS
ACTATATATTTACTATTCAA+TGG 0.405664 5_3:-44748759 None:intergenic
TTGGAAGGTTGGGTGGAGGG+TGG 0.409313 5_3:+44748788 Msa0813730:CDS
TTTGATGTGGTTACTCTAGA+TGG 0.410742 5_3:+44746840 Msa0813730:five_prime_UTR
ATAGGCCAAAACGACGCAAC+AGG 0.417767 5_3:-44747398 None:intergenic
ACAAAGGTAACAAGGATGTT+GGG 0.417990 5_3:-44747116 None:intergenic
CATCATGAAGTGGAAAATCT+TGG 0.420380 5_3:-44748179 None:intergenic
TCTTACCTCTCCAATAATGA+TGG 0.427830 5_3:+44748731 Msa0813730:CDS
ATGTGAGTGGTGGGTGGAGG+AGG 0.429451 5_3:-44747017 None:intergenic
TACTAGCTACAAAAGAAGAT+TGG 0.432553 5_3:-44749310 None:intergenic
GAATCAAGTAGTTTCTCAAA+TGG 0.433865 5_3:-44747296 None:intergenic
GGATTGGAAGGTTGGGTGGA+GGG 0.435164 5_3:+44748785 Msa0813730:CDS
CCTTTGTTGTCACGGAAGAA+TGG 0.441073 5_3:+44747132 Msa0813730:CDS
ACTATGTGAGTGGTGGGTGG+AGG 0.445074 5_3:-44747020 None:intergenic
TGGTGGGTCGGAGTTGATGA+TGG 0.447434 5_3:-44747159 None:intergenic
AACGTTATTCCCTCCGAAGA+AGG 0.450034 5_3:+44747218 Msa0813730:CDS
AGTTTGCATAGGTTCATCAT+TGG 0.450906 5_3:-44747077 None:intergenic
GTGGGTGGAGGAGGATTTGG+AGG 0.452077 5_3:-44747008 None:intergenic
GTTTGCATAGGTTCATCATT+GGG 0.452384 5_3:-44747076 None:intergenic
ACAAGTATTTCAACAAGTAA+TGG 0.452611 5_3:+44749119 Msa0813730:three_prime_UTR
CTAAGTGGAAAGATATTTGT+GGG 0.454247 5_3:+44748583 Msa0813730:CDS
GGGTTGATGTGGCCTCGACC+TGG 0.457192 5_3:-44747056 None:intergenic
GGGAATAACGTTTGGGATGG+TGG 0.466198 5_3:-44747207 None:intergenic
AATCAAGTAGTTTCTCAAAT+GGG 0.466238 5_3:-44747295 None:intergenic
GAGCTAATTCTAACAATCTA+CGG 0.466397 5_3:-44748215 None:intergenic
TTTCTTGGTAATATATTACA+TGG 0.470876 5_3:+44748990 Msa0813730:CDS
TAGTTGAGGATTGGAAGGTT+GGG 0.475505 5_3:+44748778 Msa0813730:CDS
TGGGTGGAGGGTGGAAAAGA+AGG 0.475635 5_3:+44748797 Msa0813730:CDS
TATGCATCAACACTCTCAAT+TGG 0.478373 5_3:-44748635 None:intergenic
TGTTGAATTCCACCCACAAT+GGG 0.479971 5_3:-44748679 None:intergenic
TATATTTACTATTCAATGGT+TGG 0.484708 5_3:-44748755 None:intergenic
GTAAATATATAGTTGAGGAT+TGG 0.491009 5_3:+44748769 Msa0813730:CDS
TTGAGGATTGGAAGGTTGGG+TGG 0.494699 5_3:+44748781 Msa0813730:CDS
AGGAGGATTTGGAGGTTCCA+TGG 0.502238 5_3:-44747000 None:intergenic
ATTATTGGAGAGGTAAGAAA+AGG 0.507093 5_3:-44748726 None:intergenic
TATTGTGCTTTCTTCATCCA+TGG 0.508332 5_3:-44748249 None:intergenic
AACAAAGGTAACAAGGATGT+TGG 0.510094 5_3:-44747117 None:intergenic
TCTAAGTGGAAAGATATTTG+TGG 0.514263 5_3:+44748582 Msa0813730:CDS
AGACGAATTGATGAGTTCCC+CGG 0.518887 5_3:-44748156 None:intergenic
ATCAAGTTCAACATCTTGGT+TGG 0.524790 5_3:-44748406 None:intergenic
GTGTTGATGCATAGTGCTAT+AGG 0.529886 5_3:+44748645 Msa0813730:CDS
ATGTGGCCTCGACCTGGGTA+TGG 0.530456 5_3:-44747050 None:intergenic
ATTTGGAGGTTCCATGGAGA+TGG 0.532096 5_3:-44746994 None:intergenic
CTCAAAACATCAATTGCTTG+AGG 0.534158 5_3:-44748303 None:intergenic
AGCTAATTCTAACAATCTAC+GGG 0.535491 5_3:-44748214 None:intergenic
GGTTCATCATTGGGTTGATG+TGG 0.536548 5_3:-44747067 None:intergenic
TGGCTAGATAATCAACCCAT+TGG 0.537035 5_3:+44748438 Msa0813730:CDS
GTTCCATGGAGATGGTGACT+TGG 0.537794 5_3:-44746986 None:intergenic
CATAAATGGAAATATTTGCA+AGG 0.541050 5_3:+44749337 Msa0813730:three_prime_UTR
TTGCCTCGACCTTCTTCGGA+GGG 0.545928 5_3:-44747227 None:intergenic
CAAATCAATGAAATTGCGAA+TGG 0.547383 5_3:+44748510 Msa0813730:CDS
GGGTGGAATTCAACAAGAGA+AGG 0.548966 5_3:+44748687 Msa0813730:CDS
TGACTAAAATAAGGTATGGT+AGG 0.550916 5_3:-44748360 None:intergenic
ATGATGAAGTGAAGGAAATG+AGG 0.551360 5_3:+44748889 Msa0813730:CDS
TATCGTCGTTTGGAGGAAAA+CGG 0.553208 5_3:+44747452 Msa0813730:CDS
CCTTGTTACCTTTGTTGTCA+CGG 0.554764 5_3:+44747124 Msa0813730:CDS
TAAGAAGAGATGAAATTGCT+AGG 0.556457 5_3:+44748838 Msa0813730:CDS
ATATATAGTTGAGGATTGGA+AGG 0.557301 5_3:+44748773 Msa0813730:CDS
GGCTCAATTTCATATATGGA+AGG 0.559502 5_3:-44748282 None:intergenic
GCCGTGACTAAAATAAGGTA+TGG 0.560100 5_3:-44748364 None:intergenic
GACATATAGAACAGAACCAA+TGG 0.564420 5_3:-44748454 None:intergenic
TTGTTGAATTCCACCCACAA+TGG 0.566212 5_3:-44748680 None:intergenic
ACATATAGAACAGAACCAAT+GGG 0.568120 5_3:-44748453 None:intergenic
TAAACATTATCGTCGTTTGG+AGG 0.575710 5_3:+44747445 Msa0813730:CDS
ATCTTGGTTGGTGCTTAGAG+AGG 0.582916 5_3:-44748394 None:intergenic
GCGAATGGTTTGCTCGAAAG+TGG 0.584098 5_3:+44748525 Msa0813730:CDS
TCTCCAAGTCACCATCTCCA+TGG 0.586888 5_3:+44746983 Msa0813730:exon
TCTAAGTAGAAGGTACTACA+AGG 0.589189 5_3:-44749054 None:intergenic
CAACGTGCAATTGCAAGTGG+AGG 0.589211 5_3:+44748942 Msa0813730:CDS
CAAAGGTAACAAGGATGTTG+GGG 0.590706 5_3:-44747115 None:intergenic
CTATCATGTATAATCACACT+CGG 0.591952 5_3:-44747332 None:intergenic
GGTTGATGTGGCCTCGACCT+GGG 0.592829 5_3:-44747055 None:intergenic
ATTCCCTCCGAAGAAGGTCG+AGG 0.594862 5_3:+44747224 Msa0813730:CDS
ATAAATGGAAATATTTGCAA+GGG 0.596783 5_3:+44749338 Msa0813730:three_prime_UTR
AGGATTCATACACTTTGATG+TGG 0.599095 5_3:+44746827 Msa0813730:five_prime_UTR
CCGTGACAACAAAGGTAACA+AGG 0.601448 5_3:-44747124 None:intergenic
CGTAAGCTCGCATCATGAAG+TGG 0.601654 5_3:-44748189 None:intergenic
TTTGCCTCGACCTTCTTCGG+AGG 0.601667 5_3:-44747228 None:intergenic
GCCTCGACCTGGGTATGGTA+CGG 0.604546 5_3:-44747045 None:intergenic
TACGGCTACTATGTGAGTGG+TGG 0.605693 5_3:-44747027 None:intergenic
GCCGTACCATACCCAGGTCG+AGG 0.605968 5_3:+44747044 Msa0813730:CDS
GCTCAATTTCATATATGGAA+GGG 0.606891 5_3:-44748281 None:intergenic
TCTGTTCTATATGTCTCACA+AGG 0.608612 5_3:+44748462 Msa0813730:CDS
GAATAGTAAATATATAGTTG+AGG 0.608954 5_3:+44748764 Msa0813730:CDS
CCATTCTTCCGTGACAACAA+AGG 0.612347 5_3:-44747132 None:intergenic
GGAGGGAATAACGTTTGGGA+TGG 0.617245 5_3:-44747210 None:intergenic
ACGGCTACTATGTGAGTGGT+GGG 0.620093 5_3:-44747026 None:intergenic
TTGGTCCATCATTATTGGAG+AGG 0.620610 5_3:-44748736 None:intergenic
TGGAGATTAAGAGTTTGCAT+AGG 0.622718 5_3:-44747088 None:intergenic
AACGTGCAATTGCAAGTGGA+GGG 0.623769 5_3:+44748943 Msa0813730:CDS
AACGTGTGGATTACATTCCG+GGG 0.625241 5_3:+44748139 Msa0813730:CDS
TGCGTGGAGAAAGTTCTAAG+TGG 0.625771 5_3:+44748568 Msa0813730:CDS
TGTCAACGTGCAATTGCAAG+TGG 0.626244 5_3:+44748939 Msa0813730:CDS
TTTGGAAGATGATGAAGTGA+AGG 0.627399 5_3:+44748881 Msa0813730:CDS
ACTAACCTGAAGCATTTACT+GGG 0.632218 5_3:-44747481 None:intergenic
TTATTGTTGAGTAATAGTGA+AGG 0.635836 5_3:-44746869 None:intergenic
TAGCTCTCAATACCATACCA+TGG 0.643975 5_3:+44748232 Msa0813730:CDS
GCTACTATGTGAGTGGTGGG+TGG 0.649317 5_3:-44747023 None:intergenic
ATAGTAGCCGTACCATACCC+AGG 0.666075 5_3:+44747038 Msa0813730:CDS
AGAAGTTGGTGACAAACGTG+TGG 0.670943 5_3:+44748125 Msa0813730:intron
AGTAGAAGGTACTACAAGGG+AGG 0.671746 5_3:-44749050 None:intergenic
TAAGTGGAAAGATATTTGTG+GGG 0.677407 5_3:+44748584 Msa0813730:CDS
CTAAGTAGAAGGTACTACAA+GGG 0.684941 5_3:-44749053 None:intergenic
AGATTCTTGTGGATAATGCG+TGG 0.687664 5_3:+44748552 Msa0813730:CDS
TTGATGCATAGTGCTATAGG+TGG 0.705531 5_3:+44748648 Msa0813730:CDS
TGGTACGGCTACTATGTGAG+TGG 0.708329 5_3:-44747030 None:intergenic
ACTCTCAATTGGTCACACCA+AGG 0.710331 5_3:-44748624 None:intergenic
AAAGTGGTGTAAGATTCTTG+TGG 0.710983 5_3:+44748541 Msa0813730:CDS
CTGTTCTATATGTCTCACAA+GGG 0.733356 5_3:+44748463 Msa0813730:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TACAGTATATAATATAATTT+AGG + chr5_3:44747879-44747898 Msa0813730:intron 10.0%
!! TACAGTATATAATATAATTT+AGG + chr5_3:44747879-44747898 Msa0813730:intron 10.0%
!! TGAAATGAAATGAATTAAAA+AGG - chr5_3:44746911-44746930 None:intergenic 15.0%
!!! TCTTTTTTTGACTAAATTTA+AGG + chr5_3:44747509-44747528 Msa0813730:intron 15.0%
!! TTGAACTTGATTATATAAAT+TGG + chr5_3:44748418-44748437 Msa0813730:CDS 15.0%
!! ACTATATATTTACTATTCAA+TGG - chr5_3:44748762-44748781 None:intergenic 15.0%
!!! AAAAGCTTTCAAATTATTTT+CGG - chr5_3:44748973-44748992 None:intergenic 15.0%
!!! TAACAAAAACTTACTTCTTT+TGG - chr5_3:44747587-44747606 None:intergenic 20.0%
!!! AAAAATAGAATTTTCTGTCT+TGG - chr5_3:44747656-44747675 None:intergenic 20.0%
!!! AAGACAGAAAATTCTATTTT+TGG + chr5_3:44747655-44747674 Msa0813730:intron 20.0%
!! CTAAAAAATGCAAGTAAAAT+GGG - chr5_3:44747811-44747830 None:intergenic 20.0%
!!! TAAAAGTGTTTTCTTTCTTT+CGG - chr5_3:44747786-44747805 None:intergenic 20.0%
!! CTAAAAAATGCAAGTAAAAT+GGG - chr5_3:44747811-44747830 None:intergenic 20.0%
!! TATATTTACTATTCAATGGT+TGG - chr5_3:44748758-44748777 None:intergenic 20.0%
!! GAATAGTAAATATATAGTTG+AGG + chr5_3:44748764-44748783 Msa0813730:CDS 20.0%
!!! AATAATTTGAAAGCTTTTCT+TGG + chr5_3:44748975-44748994 Msa0813730:CDS 20.0%
!!! TTTCTTGGTAATATATTACA+TGG + chr5_3:44748990-44749009 Msa0813730:CDS 20.0%
!! CAATATATTACTCTATTGTT+TGG - chr5_3:44749018-44749037 None:intergenic 20.0%
!! ATAATTGAGTTCATTCTATT+CGG + chr5_3:44749167-44749186 Msa0813730:three_prime_UTR 20.0%
!!! AATTGAATGTTGCTTTAAAA+TGG + chr5_3:44749251-44749270 Msa0813730:three_prime_UTR 20.0%
! TTATTGTTGAGTAATAGTGA+AGG - chr5_3:44746872-44746891 None:intergenic 25.0%
!!! AGTGAAAGATAATGGAATTA+TGG - chr5_3:44746964-44746983 None:intergenic 25.0%
! AATCAAGTAGTTTCTCAAAT+GGG - chr5_3:44747298-44747317 None:intergenic 25.0%
!! TACATGATAGCTATTTGTTT+TGG + chr5_3:44747345-44747364 Msa0813730:CDS 25.0%
!!! ACATGATAGCTATTTGTTTT+GGG + chr5_3:44747346-44747365 Msa0813730:CDS 25.0%
! TTAACATCCTCTGTAAAAAA+AGG - chr5_3:44747537-44747556 None:intergenic 25.0%
! TGAAGTGGTAAATAAAAGAA+GGG - chr5_3:44747720-44747739 None:intergenic 25.0%
! TTGAAGTGGTAAATAAAAGA+AGG - chr5_3:44747721-44747740 None:intergenic 25.0%
!!! AAATGTTTTTTCTCTTGAAG+TGG - chr5_3:44747735-44747754 None:intergenic 25.0%
!! AGTGTTTTCTTTCTTTCTAA+AGG - chr5_3:44747782-44747801 None:intergenic 25.0%
! CCTAAAAAATGCAAGTAAAA+TGG - chr5_3:44747812-44747831 None:intergenic 25.0%
!!! CCATTTTACTTGCATTTTTT+AGG + chr5_3:44747809-44747828 Msa0813730:intron 25.0%
! TTAGGAAAAATTCACAAACT+TGG + chr5_3:44747827-44747846 Msa0813730:intron 25.0%
! CCTAAAAAATGCAAGTAAAA+TGG - chr5_3:44747812-44747831 None:intergenic 25.0%
!!! CCATTTTACTTGCATTTTTT+AGG + chr5_3:44747809-44747828 Msa0813730:intron 25.0%
! TTAGGAAAAATTCACAAACT+TGG + chr5_3:44747827-44747846 Msa0813730:intron 25.0%
!! TAGTTTATGGACTAAATCAA+TGG + chr5_3:44748043-44748062 Msa0813730:intron 25.0%
! TCTATACCAATTTACACAAT+TGG + chr5_3:44748336-44748355 Msa0813730:CDS 25.0%
! TATAATCAAGTTCAACATCT+TGG - chr5_3:44748413-44748432 None:intergenic 25.0%
! GTAAATATATAGTTGAGGAT+TGG + chr5_3:44748769-44748788 Msa0813730:CDS 25.0%
! TGTTAGAAGATTTATGGATT+TGG + chr5_3:44748863-44748882 Msa0813730:CDS 25.0%
! GAAAATGAATTCTAAGTAGA+AGG - chr5_3:44749067-44749086 None:intergenic 25.0%
! ACAAGTATTTCAACAAGTAA+TGG + chr5_3:44749119-44749138 Msa0813730:three_prime_UTR 25.0%
!!! GGTGTTTTTATCTTTCTATT+CGG + chr5_3:44749198-44749217 Msa0813730:intron 25.0%
! CTTGCAAATATTTCCATTTA+TGG - chr5_3:44749339-44749358 None:intergenic 25.0%
! CATAAATGGAAATATTTGCA+AGG + chr5_3:44749337-44749356 Msa0813730:three_prime_UTR 25.0%
!! ATTTCATCACTTTTGTAGAG+AGG + chr5_3:44746807-44746826 Msa0813730:five_prime_UTR 30.0%
!!! TTGATGTTGTTGTTTGGTTT+TGG - chr5_3:44747182-44747201 None:intergenic 30.0%
TGAAGCTGTTATGACTAAAA+TGG + chr5_3:44747268-44747287 Msa0813730:CDS 30.0%
GAATCAAGTAGTTTCTCAAA+TGG - chr5_3:44747299-44747318 None:intergenic 30.0%
CTATCATGTATAATCACACT+CGG - chr5_3:44747335-44747354 None:intergenic 30.0%
TCTTAAACATTATCGTCGTT+TGG + chr5_3:44747442-44747461 Msa0813730:CDS 30.0%
!!! TAAGGTACCTTTTTTTACAG+AGG + chr5_3:44747527-44747546 Msa0813730:intron 30.0%
!!! TATTTTTGGATTCCTTAACC+AGG + chr5_3:44747669-44747688 Msa0813730:intron 30.0%
!! ATTTTTGGATTCCTTAACCA+GGG + chr5_3:44747670-44747689 Msa0813730:intron 30.0%
ACATTTATGATTTAGCTACC+TGG + chr5_3:44747749-44747768 Msa0813730:intron 30.0%
CATTTATGATTTAGCTACCT+GGG + chr5_3:44747750-44747769 Msa0813730:intron 30.0%
AACTATACCTCTCTCTAATT+CGG - chr5_3:44748028-44748047 None:intergenic 30.0%
! TTAGAGAGAGGTATAGTTTA+TGG + chr5_3:44748030-44748049 Msa0813730:intron 30.0%
CACACAAAACACTTAATAGA+TGG - chr5_3:44748086-44748105 None:intergenic 30.0%
AGCTAATTCTAACAATCTAC+GGG - chr5_3:44748217-44748236 None:intergenic 30.0%
GAGCTAATTCTAACAATCTA+CGG - chr5_3:44748218-44748237 None:intergenic 30.0%
GCTCAATTTCATATATGGAA+GGG - chr5_3:44748284-44748303 None:intergenic 30.0%
TTGAGGCTCAATTTCATATA+TGG - chr5_3:44748289-44748308 None:intergenic 30.0%
TGACTAAAATAAGGTATGGT+AGG - chr5_3:44748363-44748382 None:intergenic 30.0%
!!! ACCATACCTTATTTTAGTCA+CGG + chr5_3:44748363-44748382 Msa0813730:CDS 30.0%
ACATATAGAACAGAACCAAT+GGG - chr5_3:44748456-44748475 None:intergenic 30.0%
CAAATCAATGAAATTGCGAA+TGG + chr5_3:44748510-44748529 Msa0813730:CDS 30.0%
TCTAAGTGGAAAGATATTTG+TGG + chr5_3:44748582-44748601 Msa0813730:CDS 30.0%
CTAAGTGGAAAGATATTTGT+GGG + chr5_3:44748583-44748602 Msa0813730:CDS 30.0%
TAAGTGGAAAGATATTTGTG+GGG + chr5_3:44748584-44748603 Msa0813730:CDS 30.0%
AAAGATATTTGTGGGGAAAA+AGG + chr5_3:44748591-44748610 Msa0813730:CDS 30.0%
AAGATATTTGTGGGGAAAAA+GGG + chr5_3:44748592-44748611 Msa0813730:CDS 30.0%
ATTATTGGAGAGGTAAGAAA+AGG - chr5_3:44748729-44748748 None:intergenic 30.0%
ATATATAGTTGAGGATTGGA+AGG + chr5_3:44748773-44748792 Msa0813730:CDS 30.0%
TAAGAAGAGATGAAATTGCT+AGG + chr5_3:44748838-44748857 Msa0813730:CDS 30.0%
!! TAGGCTTGTTAGAAGATTTA+TGG + chr5_3:44748857-44748876 Msa0813730:CDS 30.0%
ATGGATGTAAATCTGTTAGA+TGG + chr5_3:44749270-44749289 Msa0813730:three_prime_UTR 30.0%
TACTAGCTACAAAAGAAGAT+TGG - chr5_3:44749313-44749332 None:intergenic 30.0%
GTAGCTAGTAAATCCATAAA+TGG + chr5_3:44749323-44749342 Msa0813730:three_prime_UTR 30.0%
AGGATTCATACACTTTGATG+TGG + chr5_3:44746827-44746846 Msa0813730:five_prime_UTR 35.0%
TTTGATGTGGTTACTCTAGA+TGG + chr5_3:44746840-44746859 Msa0813730:five_prime_UTR 35.0%
ACTTGGAGAGTGAAAGATAA+TGG - chr5_3:44746972-44746991 None:intergenic 35.0%
GTTTGCATAGGTTCATCATT+GGG - chr5_3:44747079-44747098 None:intergenic 35.0%
AGTTTGCATAGGTTCATCAT+TGG - chr5_3:44747080-44747099 None:intergenic 35.0%
TGGAGATTAAGAGTTTGCAT+AGG - chr5_3:44747091-44747110 None:intergenic 35.0%
ACAAAGGTAACAAGGATGTT+GGG - chr5_3:44747119-44747138 None:intergenic 35.0%
AACAAAGGTAACAAGGATGT+TGG - chr5_3:44747120-44747139 None:intergenic 35.0%
!!! TGTTGTTGTTTGGTTTTGGT+GGG - chr5_3:44747178-44747197 None:intergenic 35.0%
!!! ATGTTGTTGTTTGGTTTTGG+TGG - chr5_3:44747179-44747198 None:intergenic 35.0%
! GCGAATTTGATGTTGTTGTT+TGG - chr5_3:44747188-44747207 None:intergenic 35.0%
TAAACATTATCGTCGTTTGG+AGG + chr5_3:44747445-44747464 Msa0813730:CDS 35.0%
! ACTAACCTGAAGCATTTACT+GGG - chr5_3:44747484-44747503 None:intergenic 35.0%
! AACTAACCTGAAGCATTTAC+TGG - chr5_3:44747485-44747504 None:intergenic 35.0%
!! AAAAGAAGGGTCTTGTTAAC+CGG - chr5_3:44747707-44747726 None:intergenic 35.0%
! CTTTCTAAAGGAATATTCCC+AGG - chr5_3:44747770-44747789 None:intergenic 35.0%
TAAAATGCTGCAACAGAAGT+TGG + chr5_3:44748111-44748130 Msa0813730:intron 35.0%
CATCATGAAGTGGAAAATCT+TGG - chr5_3:44748182-44748201 None:intergenic 35.0%
TATTGTGCTTTCTTCATCCA+TGG - chr5_3:44748252-44748271 None:intergenic 35.0%
GGCTCAATTTCATATATGGA+AGG - chr5_3:44748285-44748304 None:intergenic 35.0%
CTCAAAACATCAATTGCTTG+AGG - chr5_3:44748306-44748325 None:intergenic 35.0%
GTAGGTCCAATTGTGTAAAT+TGG - chr5_3:44748345-44748364 None:intergenic 35.0%
ATTTGGCCGTGACTAAAATA+AGG - chr5_3:44748372-44748391 None:intergenic 35.0%
ATCAAGTTCAACATCTTGGT+TGG - chr5_3:44748409-44748428 None:intergenic 35.0%
GACATATAGAACAGAACCAA+TGG - chr5_3:44748457-44748476 None:intergenic 35.0%
TCTGTTCTATATGTCTCACA+AGG + chr5_3:44748462-44748481 Msa0813730:CDS 35.0%
CTGTTCTATATGTCTCACAA+GGG + chr5_3:44748463-44748482 Msa0813730:CDS 35.0%
AAAGTGGTGTAAGATTCTTG+TGG + chr5_3:44748541-44748560 Msa0813730:CDS 35.0%
!!! AAAAAGGGTTTGTTTTGCCT+TGG + chr5_3:44748607-44748626 Msa0813730:CDS 35.0%
TATGCATCAACACTCTCAAT+TGG - chr5_3:44748638-44748657 None:intergenic 35.0%
! ATAGTGCTATAGGTGGTTTT+TGG + chr5_3:44748655-44748674 Msa0813730:CDS 35.0%
!!! ACAAGAGAAGGTTTGTTTTG+TGG + chr5_3:44748699-44748718 Msa0813730:CDS 35.0%
TCTTACCTCTCCAATAATGA+TGG + chr5_3:44748731-44748750 Msa0813730:CDS 35.0%
! AATGGTTGGTCCATCATTAT+TGG - chr5_3:44748744-44748763 None:intergenic 35.0%
TTTGGAAGATGATGAAGTGA+AGG + chr5_3:44748881-44748900 Msa0813730:CDS 35.0%
ATGATGAAGTGAAGGAAATG+AGG + chr5_3:44748889-44748908 Msa0813730:CDS 35.0%
CAATTGCACGTTGACATATT+TGG - chr5_3:44748935-44748954 None:intergenic 35.0%
!! CTAAGTAGAAGGTACTACAA+GGG - chr5_3:44749056-44749075 None:intergenic 35.0%
!! TCTAAGTAGAAGGTACTACA+AGG - chr5_3:44749057-44749076 None:intergenic 35.0%
TCATTCTATTCGGAGTTCTA+AGG + chr5_3:44749177-44749196 Msa0813730:three_prime_UTR 35.0%
TCTTTCTATTCGGAGTTCTA+AGG + chr5_3:44749208-44749227 Msa0813730:intron 35.0%
CAAAGGTAACAAGGATGTTG+GGG - chr5_3:44747118-44747137 None:intergenic 40.0%
! CCTTGTTACCTTTGTTGTCA+CGG + chr5_3:44747124-44747143 Msa0813730:CDS 40.0%
TATCGTCGTTTGGAGGAAAA+CGG + chr5_3:44747452-44747471 Msa0813730:CDS 40.0%
GATTACCCAGTAAATGCTTC+AGG + chr5_3:44747476-44747495 Msa0813730:CDS 40.0%
TCACAAACTTGGTATGCTTC+AGG + chr5_3:44747838-44747857 Msa0813730:intron 40.0%
CACAAACTTGGTATGCTTCA+GGG + chr5_3:44747839-44747858 Msa0813730:intron 40.0%
ACAAACTTGGTATGCTTCAG+GGG + chr5_3:44747840-44747859 Msa0813730:intron 40.0%
TCACAAACTTGGTATGCTTC+AGG + chr5_3:44747838-44747857 Msa0813730:intron 40.0%
CACAAACTTGGTATGCTTCA+GGG + chr5_3:44747839-44747858 Msa0813730:intron 40.0%
ACAAACTTGGTATGCTTCAG+GGG + chr5_3:44747840-44747859 Msa0813730:intron 40.0%
TTAGGAACCGAATTAGAGAG+AGG + chr5_3:44748018-44748037 Msa0813730:intron 40.0%
! CAAACGTGTGGATTACATTC+CGG + chr5_3:44748137-44748156 Msa0813730:CDS 40.0%
! AAACGTGTGGATTACATTCC+GGG + chr5_3:44748138-44748157 Msa0813730:CDS 40.0%
TAGCTCTCAATACCATACCA+TGG + chr5_3:44748232-44748251 Msa0813730:CDS 40.0%
TGCTTTCTTCATCCATGGTA+TGG - chr5_3:44748247-44748266 None:intergenic 40.0%
GCCGTGACTAAAATAAGGTA+TGG - chr5_3:44748367-44748386 None:intergenic 40.0%
TGGCTAGATAATCAACCCAT+TGG + chr5_3:44748438-44748457 Msa0813730:CDS 40.0%
! CTCACAAGGGAGTTTTCTTT+CGG + chr5_3:44748476-44748495 Msa0813730:CDS 40.0%
AGATTCTTGTGGATAATGCG+TGG + chr5_3:44748552-44748571 Msa0813730:CDS 40.0%
! GTGTTGATGCATAGTGCTAT+AGG + chr5_3:44748645-44748664 Msa0813730:CDS 40.0%
TTGATGCATAGTGCTATAGG+TGG + chr5_3:44748648-44748667 Msa0813730:CDS 40.0%
TGTTGAATTCCACCCACAAT+GGG - chr5_3:44748682-44748701 None:intergenic 40.0%
TTGTTGAATTCCACCCACAA+TGG - chr5_3:44748683-44748702 None:intergenic 40.0%
TTGGTCCATCATTATTGGAG+AGG - chr5_3:44748739-44748758 None:intergenic 40.0%
ATAGTTGAGGATTGGAAGGT+TGG + chr5_3:44748777-44748796 Msa0813730:CDS 40.0%
TAGTTGAGGATTGGAAGGTT+GGG + chr5_3:44748778-44748797 Msa0813730:CDS 40.0%
ATTTGGAGGTTCCATGGAGA+TGG - chr5_3:44746997-44747016 None:intergenic 45.0%
!! GGTTCATCATTGGGTTGATG+TGG - chr5_3:44747070-44747089 None:intergenic 45.0%
AACAAGGATGTTGGGGTTGT+TGG - chr5_3:44747111-44747130 None:intergenic 45.0%
CCGTGACAACAAAGGTAACA+AGG - chr5_3:44747127-44747146 None:intergenic 45.0%
CCATTCTTCCGTGACAACAA+AGG - chr5_3:44747135-44747154 None:intergenic 45.0%
! CCTTTGTTGTCACGGAAGAA+TGG + chr5_3:44747132-44747151 Msa0813730:CDS 45.0%
!!! GTTGTTTGGTTTTGGTGGGT+CGG - chr5_3:44747174-44747193 None:intergenic 45.0%
CTTCGGAGGGAATAACGTTT+GGG - chr5_3:44747217-44747236 None:intergenic 45.0%
TCTTCGGAGGGAATAACGTT+TGG - chr5_3:44747218-44747237 None:intergenic 45.0%
AACGTTATTCCCTCCGAAGA+AGG + chr5_3:44747218-44747237 Msa0813730:CDS 45.0%
ATCTTTGCCTCGACCTTCTT+CGG - chr5_3:44747234-44747253 None:intergenic 45.0%
! ATGTTCCTGTTGCGTCGTTT+TGG + chr5_3:44747393-44747412 Msa0813730:CDS 45.0%
AGAAAAAACGACGCCGACAT+AGG - chr5_3:44747419-44747438 None:intergenic 45.0%
TGGTGTTTAACCAATGCCCT+GGG - chr5_3:44747567-44747586 None:intergenic 45.0%
! TTGGTGTTTAACCAATGCCC+TGG - chr5_3:44747568-44747587 None:intergenic 45.0%
!! AGAAGTTGGTGACAAACGTG+TGG + chr5_3:44748125-44748144 Msa0813730:intron 45.0%
! AACGTGTGGATTACATTCCG+GGG + chr5_3:44748139-44748158 Msa0813730:CDS 45.0%
AGACGAATTGATGAGTTCCC+CGG - chr5_3:44748159-44748178 None:intergenic 45.0%
TGGTGCTTAGAGAGGCAATT+TGG - chr5_3:44748389-44748408 None:intergenic 45.0%
! ATCTTGGTTGGTGCTTAGAG+AGG - chr5_3:44748397-44748416 None:intergenic 45.0%
!! TGCGTGGAGAAAGTTCTAAG+TGG + chr5_3:44748568-44748587 Msa0813730:CDS 45.0%
ACTCTCAATTGGTCACACCA+AGG - chr5_3:44748627-44748646 None:intergenic 45.0%
!!! GTGGTTTTTGGTCCCATTGT+GGG + chr5_3:44748667-44748686 Msa0813730:CDS 45.0%
GGGTGGAATTCAACAAGAGA+AGG + chr5_3:44748687-44748706 Msa0813730:CDS 45.0%
TGTCAACGTGCAATTGCAAG+TGG + chr5_3:44748939-44748958 Msa0813730:CDS 45.0%
AACGTGCAATTGCAAGTGGA+GGG + chr5_3:44748943-44748962 Msa0813730:CDS 45.0%
!! AGTAGAAGGTACTACAAGGG+AGG - chr5_3:44749053-44749072 None:intergenic 45.0%
TCTCCAAGTCACCATCTCCA+TGG + chr5_3:44746983-44747002 Msa0813730:exon 50.0%
GTTCCATGGAGATGGTGACT+TGG - chr5_3:44746989-44747008 None:intergenic 50.0%
AGGAGGATTTGGAGGTTCCA+TGG - chr5_3:44747003-44747022 None:intergenic 50.0%
ACGGCTACTATGTGAGTGGT+GGG - chr5_3:44747029-44747048 None:intergenic 50.0%
TACGGCTACTATGTGAGTGG+TGG - chr5_3:44747030-44747049 None:intergenic 50.0%
TGGTACGGCTACTATGTGAG+TGG - chr5_3:44747033-44747052 None:intergenic 50.0%
ATAGTAGCCGTACCATACCC+AGG + chr5_3:44747038-44747057 Msa0813730:CDS 50.0%
! GGGAATAACGTTTGGGATGG+TGG - chr5_3:44747210-44747229 None:intergenic 50.0%
GGAGGGAATAACGTTTGGGA+TGG - chr5_3:44747213-44747232 None:intergenic 50.0%
ATAGGCCAAAACGACGCAAC+AGG - chr5_3:44747401-44747420 None:intergenic 50.0%
!! TGCGTCGTTTTGGCCTATGT+CGG + chr5_3:44747403-44747422 Msa0813730:CDS 50.0%
AGGATGTTAAACAGTGCCCC+AGG + chr5_3:44747547-44747566 Msa0813730:intron 50.0%
GGATGTTAAACAGTGCCCCA+GGG + chr5_3:44747548-44747567 Msa0813730:intron 50.0%
GGTGTTTAACCAATGCCCTG+GGG - chr5_3:44747566-44747585 None:intergenic 50.0%
CGTAAGCTCGCATCATGAAG+TGG - chr5_3:44748192-44748211 None:intergenic 50.0%
!! GCGAATGGTTTGCTCGAAAG+TGG + chr5_3:44748525-44748544 Msa0813730:CDS 50.0%
!!! GGTGGTTTTTGGTCCCATTG+TGG + chr5_3:44748666-44748685 Msa0813730:CDS 50.0%
!!! GTTTTTGGTCCCATTGTGGG+TGG + chr5_3:44748670-44748689 Msa0813730:CDS 50.0%
TTGAGGATTGGAAGGTTGGG+TGG + chr5_3:44748781-44748800 Msa0813730:CDS 50.0%
CAACGTGCAATTGCAAGTGG+AGG + chr5_3:44748942-44748961 Msa0813730:CDS 50.0%
!! ACTATGTGAGTGGTGGGTGG+AGG - chr5_3:44747023-44747042 None:intergenic 55.0%
! GCTACTATGTGAGTGGTGGG+TGG - chr5_3:44747026-44747045 None:intergenic 55.0%
!! TGGTGGGTCGGAGTTGATGA+TGG - chr5_3:44747162-44747181 None:intergenic 55.0%
ATTCCCTCCGAAGAAGGTCG+AGG + chr5_3:44747224-44747243 Msa0813730:CDS 55.0%
TTGCCTCGACCTTCTTCGGA+GGG - chr5_3:44747230-44747249 None:intergenic 55.0%
TTTGCCTCGACCTTCTTCGG+AGG - chr5_3:44747231-44747250 None:intergenic 55.0%
TAAACAGTGCCCCAGGGCAT+TGG + chr5_3:44747554-44747573 Msa0813730:intron 55.0%
GGATTCCTTAACCAGGGTCC+CGG + chr5_3:44747676-44747695 Msa0813730:intron 55.0%
TCTTGTTAACCGGTGCCTCC+GGG - chr5_3:44747697-44747716 None:intergenic 55.0%
! GTCTTGTTAACCGGTGCCTC+CGG - chr5_3:44747698-44747717 None:intergenic 55.0%
AGGATTGGAAGGTTGGGTGG+AGG + chr5_3:44748784-44748803 Msa0813730:CDS 55.0%
GGATTGGAAGGTTGGGTGGA+GGG + chr5_3:44748785-44748804 Msa0813730:CDS 55.0%
TGGGTGGAGGGTGGAAAAGA+AGG + chr5_3:44748797-44748816 Msa0813730:CDS 55.0%
GTGGGTGGAGGAGGATTTGG+AGG - chr5_3:44747011-44747030 None:intergenic 60.0%
!! GTGGTGGGTGGAGGAGGATT+TGG - chr5_3:44747014-44747033 None:intergenic 60.0%
!! ATGTGAGTGGTGGGTGGAGG+AGG - chr5_3:44747020-44747039 None:intergenic 60.0%
GCCTCGACCTGGGTATGGTA+CGG - chr5_3:44747048-44747067 None:intergenic 60.0%
ATGTGGCCTCGACCTGGGTA+TGG - chr5_3:44747053-44747072 None:intergenic 60.0%
! GGTTGATGTGGCCTCGACCT+GGG - chr5_3:44747058-44747077 None:intergenic 60.0%
TTCCTTAACCAGGGTCCCGG+AGG + chr5_3:44747679-44747698 Msa0813730:intron 60.0%
TTGGAAGGTTGGGTGGAGGG+TGG + chr5_3:44748788-44748807 Msa0813730:CDS 60.0%
GCCGTACCATACCCAGGTCG+AGG + chr5_3:44747044-44747063 Msa0813730:CDS 65.0%
!! GGGTTGATGTGGCCTCGACC+TGG - chr5_3:44747059-44747078 None:intergenic 65.0%
TGCCTCCGGGACCCTGGTTA+AGG - chr5_3:44747684-44747703 None:intergenic 65.0%
! AACCAGGGTCCCGGAGGCAC+CGG + chr5_3:44747685-44747704 Msa0813730:intron 70.0%
AACCGGTGCCTCCGGGACCC+TGG - chr5_3:44747690-44747709 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 44746807 44749360 44746807 ID=Msa0813730;Name=Msa0813730
chr5_3 mRNA 44746807 44749360 44746807 ID=Msa0813730-mRNA-1;Parent=Msa0813730;Name=Msa0813730-mRNA-1;_AED=0.35;_eAED=0.35;_QI=195|1|1|1|0.5|0.33|3|304|464
chr5_3 exon 44746807 44747497 44746807 ID=Msa0813730-mRNA-1:exon:13768;Parent=Msa0813730-mRNA-1
chr5_3 exon 44748127 44749198 44748127 ID=Msa0813730-mRNA-1:exon:13769;Parent=Msa0813730-mRNA-1
chr5_3 exon 44749230 44749360 44749230 ID=Msa0813730-mRNA-1:exon:13770;Parent=Msa0813730-mRNA-1
chr5_3 five_prime_UTR 44746807 44747001 44746807 ID=Msa0813730-mRNA-1:five_prime_utr;Parent=Msa0813730-mRNA-1
chr5_3 CDS 44747002 44747497 44747002 ID=Msa0813730-mRNA-1:cds;Parent=Msa0813730-mRNA-1
chr5_3 CDS 44748127 44749025 44748127 ID=Msa0813730-mRNA-1:cds;Parent=Msa0813730-mRNA-1
chr5_3 three_prime_UTR 44749026 44749198 44749026 ID=Msa0813730-mRNA-1:three_prime_utr;Parent=Msa0813730-mRNA-1
chr5_3 three_prime_UTR 44749230 44749360 44749230 ID=Msa0813730-mRNA-1:three_prime_utr;Parent=Msa0813730-mRNA-1
Gene Sequence

>Msa0813730

ATGGAACCTCCAAATCCTCCTCCACCCACCACTCACATAGTAGCCGTACCATACCCAGGTCGAGGCCACATCAACCCAATGATGAACCTATGCAAACTCTTAATCTCCAACAACCCCAACATCCTTGTTACCTTTGTTGTCACGGAAGAATGGCTCACCATCATCAACTCCGACCCACCAAAACCAAACAACAACATCAAATTCGCCACCATCCCAAACGTTATTCCCTCCGAAGAAGGTCGAGGCAAAGATTTTCTTAATTTTCTTGAAGCTGTTATGACTAAAATGGAAGACCCATTTGAGAAACTACTTGATTCGTTTGAGACAGTGCCGAGTGTGATTATACATGATAGCTATTTGTTTTGGGTTATAAGAGTTGCGAATAAGAGAAATGTTCCTGTTGCGTCGTTTTGGCCTATGTCGGCGTCGTTTTTTCTTGTTCTTAAACATTATCGTCGTTTGGAGGAAAACGGTGATTACCCAGTAAATGCTTCAGAAGTTGGTGACAAACGTGTGGATTACATTCCGGGGAACTCATCAATTCGTCTCCAAGATTTTCCACTTCATGATGCGAGCTTACGCACCCGTAGATTGTTAGAATTAGCTCTCAATACCATACCATGGATGAAGAAAGCACAATATCTATTATTCCCTTCCATATATGAAATTGAGCCTCAAGCAATTGATGTTTTGAGAGAAGAATTTTCTATACCAATTTACACAATTGGACCTACCATACCTTATTTTAGTCACGGCCAAATTGCCTCTCTAAGCACCAACCAAGATGTTGAACTTGATTATATAAATTGGCTAGATAATCAACCCATTGGTTCTGTTCTATATGTCTCACAAGGGAGTTTTCTTTCGGTTTCAAGCGAACAAATCAATGAAATTGCGAATGGTTTGCTCGAAAGTGGTGTAAGATTCTTGTGGATAATGCGTGGAGAAAGTTCTAAGTGGAAAGATATTTGTGGGGAAAAAGGGTTTGTTTTGCCTTGGTGTGACCAATTGAGAGTGTTGATGCATAGTGCTATAGGTGGTTTTTGGTCCCATTGTGGGTGGAATTCAACAAGAGAAGGTTTGTTTTGTGGTGTGCCTTTTCTTACCTCTCCAATAATGATGGACCAACCATTGAATAGTAAATATATAGTTGAGGATTGGAAGGTTGGGTGGAGGGTGGAAAAGAAGGTTAAAGATGATGTTTTGATAAGAAGAGATGAAATTGCTAGGCTTGTTAGAAGATTTATGGATTTGGAAGATGATGAAGTGAAGGAAATGAGGAAAAGAGCAAGAGAGCTTCGCCAAATATGTCAACGTGCAATTGCAAGTGGAGGGTCATCCGAAAATAATTTGAAAGCTTTTCTTGGTAATATATTACATGGATCCAAACAATAG
Protein sequence

>Msa0813730

MEPPNPPPPTTHIVAVPYPGRGHINPMMNLCKLLISNNPNILVTFVVTEEWLTIINSDPPKPNNNIKFATIPNVIPSEEGRGKDFLNFLEAVMTKMEDPFEKLLDSFETVPSVIIHDSYLFWVIRVANKRNVPVASFWPMSASFFLVLKHYRRLEENGDYPVNASEVGDKRVDYIPGNSSIRLQDFPLHDASLRTRRLLELALNTIPWMKKAQYLLFPSIYEIEPQAIDVLREEFSIPIYTIGPTIPYFSHGQIASLSTNQDVELDYINWLDNQPIGSVLYVSQGSFLSVSSEQINEIANGLLESGVRFLWIMRGESSKWKDICGEKGFVLPWCDQLRVLMHSAIGGFWSHCGWNSTREGLFCGVPFLTSPIMMDQPLNSKYIVEDWKVGWRVEKKVKDDVLIRRDEIARLVRRFMDLEDDEVKEMRKRARELRQICQRAIASGGSSENNLKAFLGNILHGSKQ*