Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0814000 | RHN51483.1 | 60.563 | 639 | 221 | 6 | 20 | 650 | 1 | 616 | 0.0 | 766 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0814000 | A0A396HFX6 | 60.563 | 639 | 221 | 6 | 20 | 650 | 1 | 616 | 0.0 | 766 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0058820 | Msa0814000 | 0.857038 | 2.142466e-62 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0814000 | MtrunA17_Chr6g0469071 | 60.563 | 639 | 221 | 6 | 20 | 650 | 1 | 616 | 0.0 | 766 |
| Msa0814000 | MtrunA17_Chr1g0153901 | 60.623 | 546 | 200 | 6 | 20 | 556 | 1 | 540 | 0.0 | 651 |
| Msa0814000 | MtrunA17_Chr2g0325841 | 48.105 | 343 | 157 | 8 | 17 | 348 | 486 | 818 | 7.37e-87 | 295 |
| Msa0814000 | MtrunA17_Chr2g0325841 | 36.100 | 241 | 148 | 3 | 412 | 651 | 962 | 1197 | 1.98e-44 | 171 |
| Msa0814000 | MtrunA17_Chr5g0434431 | 66.477 | 176 | 59 | 0 | 477 | 652 | 1 | 176 | 7.42e-83 | 258 |
| Msa0814000 | MtrunA17_Chr8g0357811 | 89.908 | 109 | 11 | 0 | 427 | 535 | 1 | 109 | 2.67e-65 | 210 |
| Msa0814000 | MtrunA17_Chr4g0010671 | 38.046 | 389 | 199 | 8 | 29 | 415 | 13 | 361 | 4.04e-63 | 219 |
| Msa0814000 | MtrunA17_Chr1g0174011 | 71.429 | 98 | 28 | 0 | 555 | 652 | 1 | 98 | 1.69e-44 | 154 |
| Msa0814000 | MtrunA17_Chr1g0153911 | 73.333 | 90 | 24 | 0 | 563 | 652 | 1 | 90 | 1.22e-41 | 145 |
| Msa0814000 | MtrunA17_Chr2g0287771 | 53.271 | 107 | 50 | 0 | 427 | 533 | 1 | 107 | 4.61e-36 | 131 |
| Msa0814000 | MtrunA17_Chr2g0321271 | 91.667 | 48 | 4 | 0 | 605 | 652 | 1 | 48 | 1.75e-22 | 90.9 |
| Msa0814000 | MtrunA17_Chr6g0466851 | 28.041 | 296 | 181 | 9 | 21 | 310 | 22 | 291 | 1.19e-20 | 97.1 |
| Msa0814000 | MtrunA17_Chr4g0033251 | 71.429 | 49 | 13 | 1 | 605 | 652 | 1 | 49 | 3.68e-16 | 72.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 124 sgRNAs with CRISPR-Local
Find 251 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCGAAAGACCCCTGAATTTA+AGG | 0.126971 | 5_3:-45705735 | Msa0814000:intron |
| AATAAGTCTTTAACATATTT+TGG | 0.127701 | 5_3:+45704644 | None:intergenic |
| GGATCTGGATTATCACTTTC+TGG | 0.134380 | 5_3:+45705929 | None:intergenic |
| AAAATATGTTAAAGACTTAT+TGG | 0.154099 | 5_3:-45704642 | Msa0814000:CDS |
| ATTCTACAAAAGACTCAATT+TGG | 0.193583 | 5_3:-45706106 | Msa0814000:CDS |
| GTTCAATTTGTTTGTTTGTT+TGG | 0.205277 | 5_3:+45704852 | None:intergenic |
| TTACTTGGCACCGTTTCTTA+TGG | 0.218079 | 5_3:-45704335 | Msa0814000:CDS |
| AGATATATGGGAGCAGTTTA+TGG | 0.218472 | 5_3:-45705762 | Msa0814000:CDS |
| TTCAATTTGTTTGTTTGTTT+GGG | 0.218589 | 5_3:+45704853 | None:intergenic |
| TATGAAACTTAGGATTTATT+AGG | 0.242704 | 5_3:-45702678 | Msa0814000:exon |
| CTCAATTTGGAATGATCTTA+AGG | 0.302476 | 5_3:-45706093 | Msa0814000:intron |
| TACTTGGCACCGTTTCTTAT+GGG | 0.303383 | 5_3:-45704334 | Msa0814000:CDS |
| AGGATCCTTTGAGAAAATAT+TGG | 0.308538 | 5_3:-45705901 | Msa0814000:CDS |
| TGAAAGAGAGGCAATATCTA+AGG | 0.309941 | 5_3:-45704712 | Msa0814000:CDS |
| ACTATTCTATTCTACAAGTT+TGG | 0.312483 | 5_3:-45704601 | Msa0814000:CDS |
| ATTAAGAAATTTATGACTTC+CGG | 0.313134 | 5_3:+45704671 | None:intergenic |
| GTTCGTATGTAGGATTTAAC+TGG | 0.316883 | 5_3:+45704385 | None:intergenic |
| TATGGAGACACTCAAGACTA+TGG | 0.329517 | 5_3:-45704891 | Msa0814000:CDS |
| CGTATACTAACCTTAAATTC+AGG | 0.342289 | 5_3:+45705725 | None:intergenic |
| GTTCAGTTCGATTCAATAAC+CGG | 0.349998 | 5_3:-45706230 | Msa0814000:CDS |
| GGTTTGTTGTTATTTCTAGC+TGG | 0.359699 | 5_3:-45702621 | Msa0814000:three_prime_UTR |
| ACAAACAAATCAGATGTGTT+TGG | 0.366727 | 5_3:-45704463 | Msa0814000:CDS |
| ACTTATTGGTTGGCGGGGCT+TGG | 0.371267 | 5_3:-45704628 | Msa0814000:CDS |
| TCTTGAATTGTATGAAACTT+AGG | 0.371464 | 5_3:-45702688 | Msa0814000:exon |
| AAGTGGAGGACGGCGGTCTT+TGG | 0.371833 | 5_3:+45705808 | None:intergenic |
| CGCCGTCACGTCATGACAAA+TGG | 0.380342 | 5_3:-45705473 | Msa0814000:CDS |
| TATCCACAATCAGTTGTGTT+AGG | 0.390652 | 5_3:+45702942 | None:intergenic |
| AATTACTTTGGAAGGTCTTC+AGG | 0.392675 | 5_3:-45705061 | Msa0814000:CDS |
| GATATCTTAACAGAGGCTAT+TGG | 0.404368 | 5_3:-45705139 | Msa0814000:CDS |
| TCATTGTTGTGTCAAGATCT+TGG | 0.404397 | 5_3:+45704165 | None:intergenic |
| ACAACCAATGTATTATCCTT+TGG | 0.410346 | 5_3:+45704203 | None:intergenic |
| AAGAAAATCGCAAGGACGAC+TGG | 0.418454 | 5_3:-45704772 | Msa0814000:CDS |
| GTTTGTTGTTATTTCTAGCT+GGG | 0.421292 | 5_3:-45702620 | Msa0814000:three_prime_UTR |
| TCTGAAAAGGTTGTTGTGTT+AGG | 0.422553 | 5_3:-45704824 | Msa0814000:CDS |
| GATTTAATTAGACATGCGTT+TGG | 0.424806 | 5_3:-45706414 | None:intergenic |
| TCAATAACCGGGAAATGTTA+TGG | 0.430918 | 5_3:-45706218 | Msa0814000:CDS |
| TTTGTTTGTTTGGGAGGTAT+CGG | 0.435440 | 5_3:+45704862 | None:intergenic |
| ATTAACAAAGTTCGGACAAC+AGG | 0.435654 | 5_3:-45706266 | Msa0814000:CDS |
| GGAGGATATGATTTGCTTGA+AGG | 0.436531 | 5_3:-45705561 | Msa0814000:CDS |
| AATTTGTTTGTTTGTTTGGG+AGG | 0.440214 | 5_3:+45704856 | None:intergenic |
| GGTGGTCGTGTCCGTGGTGT+TGG | 0.446741 | 5_3:-45705103 | Msa0814000:CDS |
| GTATGCTTTGCGAAACGATT+GGG | 0.447406 | 5_3:-45702721 | Msa0814000:CDS |
| TCATGACGTGACGGCGGAGA+TGG | 0.448686 | 5_3:+45705480 | None:intergenic |
| TATGTTAAAGACTTATTGGT+TGG | 0.451274 | 5_3:-45704638 | Msa0814000:CDS |
| TTTCTAGCTGGGAGATATGT+TGG | 0.453566 | 5_3:-45702609 | Msa0814000:three_prime_UTR |
| AATTGAACCCTGTTCTGAAA+AGG | 0.453656 | 5_3:-45704837 | Msa0814000:CDS |
| GACAACAGGTGTGAAGATAA+AGG | 0.454950 | 5_3:-45706252 | Msa0814000:CDS |
| CTGCTAATATTACTACCTCT+TGG | 0.458064 | 5_3:-45702887 | Msa0814000:CDS |
| AAAATATTGGATCGCATATG+TGG | 0.460351 | 5_3:-45705888 | Msa0814000:CDS |
| GCTACAATAAGCAATTACTT+TGG | 0.470922 | 5_3:-45705073 | Msa0814000:CDS |
| GGTTCGTTGGCTTCGTCCTA+AGG | 0.473165 | 5_3:-45703993 | Msa0814000:intron |
| ATGAACCTTCTTGTTTGTTG+TGG | 0.474107 | 5_3:-45702490 | Msa0814000:three_prime_UTR |
| TTAAAGACTTATTGGTTGGC+GGG | 0.476031 | 5_3:-45704634 | Msa0814000:CDS |
| TGACATTTATGCTTTGCGTT+GGG | 0.484623 | 5_3:+45705038 | None:intergenic |
| CAATGTTTAATCAGTACTGT+TGG | 0.490381 | 5_3:-45702642 | Msa0814000:three_prime_UTR |
| CCTCCACGAGATAATGTATG+TGG | 0.495099 | 5_3:+45705579 | None:intergenic |
| GTTAAAATTAGAACATGGTC+CGG | 0.496286 | 5_3:-45704690 | Msa0814000:CDS |
| GAAACTTAGGATTTATTAGG+AGG | 0.497449 | 5_3:-45702675 | Msa0814000:exon |
| AGAGAGCACGACAAAAGAAA+GGG | 0.507249 | 5_3:-45705449 | Msa0814000:CDS |
| TTAGGTTCACTAGATGAAGA+AGG | 0.507451 | 5_3:+45706323 | None:intergenic |
| CGTGTCCGTGGTGTTGGAAG+AGG | 0.509158 | 5_3:-45705097 | Msa0814000:CDS |
| CTGACATTTATGCTTTGCGT+TGG | 0.511393 | 5_3:+45705037 | None:intergenic |
| TTTGCTTGAAGGTATAATGA+TGG | 0.512127 | 5_3:-45705550 | Msa0814000:CDS |
| CAACCTAACACAACTGATTG+TGG | 0.514100 | 5_3:-45702945 | Msa0814000:CDS |
| ACGCAACTTAGTTCGTATGT+AGG | 0.519497 | 5_3:+45704375 | None:intergenic |
| GTTAAAGACTTATTGGTTGG+CGG | 0.520213 | 5_3:-45704635 | Msa0814000:CDS |
| AAGAGAGCACGACAAAAGAA+AGG | 0.521144 | 5_3:-45705450 | Msa0814000:CDS |
| GTATACTAACCTTAAATTCA+GGG | 0.523147 | 5_3:+45705726 | None:intergenic |
| GAGATAATGTATGTGGGTAA+AGG | 0.527971 | 5_3:+45705586 | None:intergenic |
| ACTTGGCACCGTTTCTTATG+GGG | 0.528987 | 5_3:-45704333 | Msa0814000:intron |
| TGTATGCTTTGCGAAACGAT+TGG | 0.532235 | 5_3:-45702722 | Msa0814000:CDS |
| TGGAATATGATCAAATTCTC+CGG | 0.533618 | 5_3:+45705500 | None:intergenic |
| TATTACTACCTCTTGGATGA+AGG | 0.535487 | 5_3:-45702880 | Msa0814000:intron |
| CAATAAGCAATTACTTTGGA+AGG | 0.536532 | 5_3:-45705069 | Msa0814000:CDS |
| ACGGACACGACCACCATGCT+CGG | 0.542869 | 5_3:+45705111 | None:intergenic |
| GTTGTGTTAGGAAGCGCAAA+AGG | 0.546467 | 5_3:-45704812 | Msa0814000:CDS |
| TAGGTTCACTAGATGAAGAA+GGG | 0.546611 | 5_3:+45706324 | None:intergenic |
| GGAGGACGGCGGTCTTTGGA+AGG | 0.551018 | 5_3:+45705812 | None:intergenic |
| AGATCTTGACACAACAATGA+AGG | 0.553286 | 5_3:-45704162 | Msa0814000:CDS |
| ATGGAGACACTCAAGACTAT+GGG | 0.554867 | 5_3:-45704890 | Msa0814000:CDS |
| TTTGCAAATGTAGGACTCGT+TGG | 0.555861 | 5_3:-45705206 | Msa0814000:intron |
| GAGGTTCATCAATTAGCAAA+CGG | 0.557640 | 5_3:-45704028 | Msa0814000:CDS |
| AGAAAAGGATACATTTCAAG+TGG | 0.560174 | 5_3:+45705791 | None:intergenic |
| ATTGATCGTCATTTGTCCAA+AGG | 0.565798 | 5_3:-45704219 | Msa0814000:CDS |
| AGCAGAGTTCGAACAACAGA+TGG | 0.568553 | 5_3:-45704945 | Msa0814000:CDS |
| TATACTTACCCCATAAGAAA+CGG | 0.568575 | 5_3:+45704325 | None:intergenic |
| AAATATTGGATCGCATATGT+GGG | 0.575901 | 5_3:-45705887 | Msa0814000:CDS |
| TATGAACAAAGTGTGTTACT+TGG | 0.580249 | 5_3:-45704350 | Msa0814000:CDS |
| TTGTCCAAAGGATAATACAT+TGG | 0.585455 | 5_3:-45704207 | Msa0814000:CDS |
| AACTGGTTCTGTATTCATTG+CGG | 0.587743 | 5_3:+45704402 | None:intergenic |
| TGCATCCACAACAAACAAGA+AGG | 0.587769 | 5_3:+45702485 | None:intergenic |
| TTCCATTTGTCATGACGTGA+CGG | 0.588309 | 5_3:+45705471 | None:intergenic |
| TAAAGACTTATTGGTTGGCG+GGG | 0.591849 | 5_3:-45704633 | Msa0814000:CDS |
| TTCAGTTCGATTCAATAACC+GGG | 0.592008 | 5_3:-45706229 | Msa0814000:CDS |
| AAGATATCTTTACGTCCTTG+TGG | 0.596126 | 5_3:+45705154 | None:intergenic |
| TACCCACATACATTATCTCG+TGG | 0.605189 | 5_3:-45705582 | Msa0814000:CDS |
| TTTACGTGTATAGAGCACAT+TGG | 0.609577 | 5_3:-45704244 | Msa0814000:intron |
| GAGAGCACGACAAAAGAAAG+GGG | 0.611004 | 5_3:-45705448 | Msa0814000:CDS |
| TTCTTGTGTAAACAGGCACA+TGG | 0.611497 | 5_3:-45706363 | Msa0814000:CDS |
| AAAGGATACATTTCAAGTGG+AGG | 0.617115 | 5_3:+45705794 | None:intergenic |
| TGTTTGTTTCAATACAGAGA+CGG | 0.620395 | 5_3:+45704479 | None:intergenic |
| TATACTAACCTTAAATTCAG+GGG | 0.621254 | 5_3:+45705727 | None:intergenic |
| GCTATTGGAACATCCGAGCA+TGG | 0.623254 | 5_3:-45705124 | Msa0814000:CDS |
| AACTTTCTGAACATTGTCAG+TGG | 0.633738 | 5_3:+45704748 | None:intergenic |
| GATACATTTCAAGTGGAGGA+CGG | 0.634298 | 5_3:+45705798 | None:intergenic |
| ACTAGATGAAGAAGGGATGT+CGG | 0.635996 | 5_3:+45706331 | None:intergenic |
| GATCTTGGTTAAGTGAACAA+AGG | 0.637507 | 5_3:+45704180 | None:intergenic |
| GAGCATGGTGGTCGTGTCCG+TGG | 0.646629 | 5_3:-45705109 | Msa0814000:CDS |
| CTCCACGAGATAATGTATGT+GGG | 0.647609 | 5_3:+45705580 | None:intergenic |
| CTAAGGTTAAAATTAGAACA+TGG | 0.649969 | 5_3:-45704695 | Msa0814000:CDS |
| TGCAGCACAAGAAAATCGCA+AGG | 0.650310 | 5_3:-45704780 | Msa0814000:CDS |
| AATATTGGATCGCATATGTG+GGG | 0.650471 | 5_3:-45705886 | Msa0814000:CDS |
| AGAGCACGACAAAAGAAAGG+GGG | 0.662182 | 5_3:-45705447 | Msa0814000:CDS |
| TTTGTAGAATCATCTACATG+CGG | 0.667656 | 5_3:+45706119 | None:intergenic |
| CATTTGTCATGACGTGACGG+CGG | 0.670962 | 5_3:+45705474 | None:intergenic |
| AAAGGAACATTTGTACCACA+AGG | 0.673901 | 5_3:-45705169 | Msa0814000:CDS |
| ATGGTATACCTTCATCCAAG+AGG | 0.683941 | 5_3:+45702872 | None:intergenic |
| CCACATACATTATCTCGTGG+AGG | 0.684741 | 5_3:-45705579 | Msa0814000:CDS |
| TTGCATCAACTGATGCGCTG+TGG | 0.684847 | 5_3:+45704922 | None:intergenic |
| ATATTGGATCGCATATGTGG+GGG | 0.690258 | 5_3:-45705885 | Msa0814000:CDS |
| ACGTAAAGATATCTTAACAG+AGG | 0.699129 | 5_3:-45705146 | Msa0814000:CDS |
| ACATTTCAAGTGGAGGACGG+CGG | 0.718433 | 5_3:+45705801 | None:intergenic |
| TAGCACCTCTTCCAACACCA+CGG | 0.719203 | 5_3:+45705092 | None:intergenic |
| ATTGGAACATCCGAGCATGG+TGG | 0.721014 | 5_3:-45705121 | Msa0814000:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATATATATATATATATAT+GGG | + | chr5_3:45704829-45704848 | None:intergenic | 0.0% |
| !! | TATATATATATATATATATA+TGG | + | chr5_3:45704828-45704847 | None:intergenic | 0.0% |
| !! | ATAGATAAAATAATAAACTT+AGG | + | chr5_3:45702754-45702773 | None:intergenic | 10.0% |
| !! | TATATATATATATATAGAGT+AGG | - | chr5_3:45704834-45704853 | Msa0814000:CDS | 10.0% |
| !! | ATATATATATATATAGAGTA+GGG | - | chr5_3:45704835-45704854 | Msa0814000:CDS | 10.0% |
| !!! | TAGTGTAATTAATTTTATTT+TGG | - | chr5_3:45705611-45705630 | Msa0814000:CDS | 10.0% |
| !!! | AGTGTAATTAATTTTATTTT+GGG | - | chr5_3:45705612-45705631 | Msa0814000:CDS | 10.0% |
| !!! | TTAATATTGTTTTAATCTAA+TGG | + | chr5_3:45705638-45705657 | None:intergenic | 10.0% |
| !! | TTAGATTAAAACAATATTAA+TGG | - | chr5_3:45705638-45705657 | Msa0814000:intron | 10.0% |
| !! | ATATATATATATATATATGG+GGG | + | chr5_3:45705714-45705733 | None:intergenic | 10.0% |
| !! | TAAAAATTAAATTCATTTGT+AGG | - | chr5_3:45705786-45705805 | Msa0814000:CDS | 10.0% |
| !! | AAATAAGTAAAATAACAATA+AGG | + | chr5_3:45705961-45705980 | None:intergenic | 10.0% |
| !! | TGAAAAAAATTAACAAAGTT+CGG | - | chr5_3:45702488-45702507 | Msa0814000:three_prime_UTR | 15.0% |
| !!! | TTATTTTATCTATTGAACTT+AGG | - | chr5_3:45702761-45702780 | Msa0814000:CDS | 15.0% |
| !! | CATAATCATAAAAAAAAAGT+TGG | + | chr5_3:45702795-45702814 | None:intergenic | 15.0% |
| !!! | TTTTCTTCAAAAAGATATAT+GGG | - | chr5_3:45702988-45703007 | Msa0814000:intron | 15.0% |
| !! | TAAACAATTAAATTAGTACA+AGG | + | chr5_3:45703082-45703101 | None:intergenic | 15.0% |
| !!! | AATAAGTCTTTAACATATTT+TGG | + | chr5_3:45704121-45704140 | None:intergenic | 15.0% |
| !! | AAAATATGTTAAAGACTTAT+TGG | - | chr5_3:45704120-45704139 | Msa0814000:intron | 15.0% |
| !!! | TATTGATTTCAAATTTATTC+AGG | - | chr5_3:45704252-45704271 | Msa0814000:intron | 15.0% |
| !!! | ATTTAAAACTCAATTTTGTT+GGG | + | chr5_3:45704334-45704353 | None:intergenic | 15.0% |
| !!! | TGAAATAATCTTCTAAAAAA+AGG | - | chr5_3:45705304-45705323 | Msa0814000:intron | 15.0% |
| !!! | TCTTAATTTGGAAATATATA+TGG | + | chr5_3:45705925-45705944 | None:intergenic | 15.0% |
| !! | TACCAAAACTAAAAAAAAAA+AGG | + | chr5_3:45706195-45706214 | None:intergenic | 15.0% |
| !!! | GTAGTATTTTAATAGATGAT+TGG | - | chr5_3:45702620-45702639 | Msa0814000:three_prime_UTR | 20.0% |
| !!! | CATATATCTTTTTGAAGAAA+AGG | + | chr5_3:45702989-45703008 | None:intergenic | 20.0% |
| !!! | CTTTTCTTCAAAAAGATATA+TGG | - | chr5_3:45702987-45703006 | Msa0814000:intron | 20.0% |
| !! | ATAATAGGAAAAAAGTCAAA+AGG | - | chr5_3:45703131-45703150 | Msa0814000:intron | 20.0% |
| !! | TAATAGGAAAAAAGTCAAAA+GGG | - | chr5_3:45703132-45703151 | Msa0814000:intron | 20.0% |
| !!! | AAAATTCAATTAGTCTTACA+TGG | - | chr5_3:45703446-45703465 | Msa0814000:intron | 20.0% |
| !!! | AAATTCAATTAGTCTTACAT+GGG | - | chr5_3:45703447-45703466 | Msa0814000:intron | 20.0% |
| !! | CCAGAAAAAATAGATTAAAA+AGG | + | chr5_3:45703514-45703533 | None:intergenic | 20.0% |
| !!! | CCTTTTTAATCTATTTTTTC+TGG | - | chr5_3:45703511-45703530 | Msa0814000:intron | 20.0% |
| !!! | ATTTTTTCTGGATTGTAATT+TGG | - | chr5_3:45703523-45703542 | Msa0814000:intron | 20.0% |
| !!! | TTCAATTTGTTTGTTTGTTT+GGG | + | chr5_3:45703912-45703931 | None:intergenic | 20.0% |
| !! | ATTAAGAAATTTATGACTTC+CGG | + | chr5_3:45704094-45704113 | None:intergenic | 20.0% |
| !!! | GATTTAAAACTCAATTTTGT+TGG | + | chr5_3:45704335-45704354 | None:intergenic | 20.0% |
| !! | TGTTAGTTGAAAAAAAAATG+TGG | - | chr5_3:45705177-45705196 | Msa0814000:CDS | 20.0% |
| !!! | AAAAAAGGAGTTTTGATAAA+TGG | - | chr5_3:45705319-45705338 | Msa0814000:intron | 20.0% |
| !! | AGAATTATAAAGTTGTGATT+GGG | - | chr5_3:45705392-45705411 | Msa0814000:intron | 20.0% |
| !! | GATTAAAACAATATTAATGG+TGG | - | chr5_3:45705641-45705660 | Msa0814000:intron | 20.0% |
| !! | TATGAAACTTAGGATTTATT+AGG | - | chr5_3:45706084-45706103 | Msa0814000:intron | 20.0% |
| !!! | GACCTTTTTTTTTTTAGTTT+TGG | - | chr5_3:45706190-45706209 | Msa0814000:CDS | 20.0% |
| !!! | TTTTGTTTGATTTAGAAGTA+TGG | - | chr5_3:45706350-45706369 | Msa0814000:CDS | 20.0% |
| ! | ATCTAGTGAACCTAAAAAAA+GGG | - | chr5_3:45702447-45702466 | Msa0814000:three_prime_UTR | 25.0% |
| ! | ATTCTACAAAAGACTCAATT+TGG | - | chr5_3:45702656-45702675 | Msa0814000:three_prime_UTR | 25.0% |
| ! | TATACTAACCTTAAATTCAG+GGG | + | chr5_3:45703038-45703057 | None:intergenic | 25.0% |
| ! | GTATACTAACCTTAAATTCA+GGG | + | chr5_3:45703039-45703058 | None:intergenic | 25.0% |
| ! | GAAAAGATTGTGTACTAAAA+GGG | + | chr5_3:45703492-45703511 | None:intergenic | 25.0% |
| ! | TTGGTTGAAAAAACTGAAAA+AGG | - | chr5_3:45703575-45703594 | Msa0814000:intron | 25.0% |
| ! | GTTGATGCAAAAATCATTTA+TGG | - | chr5_3:45703853-45703872 | Msa0814000:intron | 25.0% |
| !! | GTTCAATTTGTTTGTTTGTT+TGG | + | chr5_3:45703913-45703932 | None:intergenic | 25.0% |
| ! | CTAAGGTTAAAATTAGAACA+TGG | - | chr5_3:45704067-45704086 | Msa0814000:intron | 25.0% |
| ! | TATGTTAAAGACTTATTGGT+TGG | - | chr5_3:45704124-45704143 | Msa0814000:intron | 25.0% |
| ! | ACTATTCTATTCTACAAGTT+TGG | - | chr5_3:45704161-45704180 | Msa0814000:CDS | 25.0% |
| ! | AGCAAACGGTAATAAAAAAA+AGG | - | chr5_3:45704748-45704767 | Msa0814000:CDS | 25.0% |
| ! | GTAATAAAAAAAAGGTTCGT+TGG | - | chr5_3:45704756-45704775 | Msa0814000:CDS | 25.0% |
| ! | GTTAGATTTAAAAGATTGGA+GGG | + | chr5_3:45704908-45704927 | None:intergenic | 25.0% |
| !! | CTCCAATCTTTTAAATCTAA+CGG | - | chr5_3:45704907-45704926 | Msa0814000:CDS | 25.0% |
| ! | TTCAGATTTCAATAGTAGTT+TGG | - | chr5_3:45705095-45705114 | Msa0814000:CDS | 25.0% |
| ! | CAGAATTATAAAGTTGTGAT+TGG | - | chr5_3:45705391-45705410 | Msa0814000:intron | 25.0% |
| !! | TTCTATTTTCTAATCCTTCA+TGG | + | chr5_3:45705480-45705499 | None:intergenic | 25.0% |
| !!! | TAACTCTTTTAAGTTACTCT+TGG | - | chr5_3:45705674-45705693 | Msa0814000:intron | 25.0% |
| ! | TATATATATATATATGGGGG+AGG | + | chr5_3:45705711-45705730 | None:intergenic | 25.0% |
| ! | ATTAAATTCATTTGTAGGCA+AGG | - | chr5_3:45705791-45705810 | Msa0814000:CDS | 25.0% |
| ! | ATATATATGGTGCAAACATA+TGG | + | chr5_3:45705912-45705931 | None:intergenic | 25.0% |
| ! | TATGTCTAGCTATCTTAATT+TGG | + | chr5_3:45705937-45705956 | None:intergenic | 25.0% |
| ! | TAATCTATTGTACAAACTGT+AGG | - | chr5_3:45705981-45706000 | Msa0814000:intron | 25.0% |
| ! | TCTTGAATTGTATGAAACTT+AGG | - | chr5_3:45706074-45706093 | Msa0814000:intron | 25.0% |
| !!! | TTTTTTAGTTTTGGTACTGT+TGG | - | chr5_3:45706199-45706218 | Msa0814000:CDS | 25.0% |
| !!! | TTTTTAGTTTTGGTACTGTT+GGG | - | chr5_3:45706200-45706219 | Msa0814000:CDS | 25.0% |
| !! | TTGACATATAGACATTTTGA+AGG | - | chr5_3:45706327-45706346 | Msa0814000:CDS | 25.0% |
| CATCTAGTGAACCTAAAAAA+AGG | - | chr5_3:45702446-45702465 | Msa0814000:three_prime_UTR | 30.0% | |
| ! | ATTTTCACCATAACATTTCC+CGG | + | chr5_3:45702554-45702573 | None:intergenic | 30.0% |
| TTTGTAGAATCATCTACATG+CGG | + | chr5_3:45702646-45702665 | None:intergenic | 30.0% | |
| ! | CTCAATTTGGAATGATCTTA+AGG | - | chr5_3:45702669-45702688 | Msa0814000:three_prime_UTR | 30.0% |
| TGATAATCCAGATCCAAAAA+AGG | - | chr5_3:45702841-45702860 | Msa0814000:intron | 30.0% | |
| !!! | TTTCTCAAAGGATCCTTTTT+TGG | + | chr5_3:45702857-45702876 | None:intergenic | 30.0% |
| ! | AGGATCCTTTGAGAAAATAT+TGG | - | chr5_3:45702861-45702880 | Msa0814000:intron | 30.0% |
| AAAATATTGGATCGCATATG+TGG | - | chr5_3:45702874-45702893 | Msa0814000:intron | 30.0% | |
| AAATATTGGATCGCATATGT+GGG | - | chr5_3:45702875-45702894 | Msa0814000:intron | 30.0% | |
| AGAAAAGGATACATTTCAAG+TGG | + | chr5_3:45702974-45702993 | None:intergenic | 30.0% | |
| CGTATACTAACCTTAAATTC+AGG | + | chr5_3:45703040-45703059 | None:intergenic | 30.0% | |
| ! | GAATTTAAGGTTAGTATACG+TGG | - | chr5_3:45703040-45703059 | Msa0814000:intron | 30.0% |
| ! | TTTGCTTGAAGGTATAATGA+TGG | - | chr5_3:45703212-45703231 | Msa0814000:intron | 30.0% |
| GGATGAAAAGAGAAAAAGAA+TGG | - | chr5_3:45703233-45703252 | Msa0814000:intron | 30.0% | |
| TGGAATATGATCAAATTCTC+CGG | + | chr5_3:45703265-45703284 | None:intergenic | 30.0% | |
| GGAAAAGATTGTGTACTAAA+AGG | + | chr5_3:45703493-45703512 | None:intergenic | 30.0% | |
| ! | TATGTGTGTTTTGCAAATGT+AGG | - | chr5_3:45703547-45703566 | Msa0814000:intron | 30.0% |
| ACGTAAAGATATCTTAACAG+AGG | - | chr5_3:45703616-45703635 | Msa0814000:intron | 30.0% | |
| GCTACAATAAGCAATTACTT+TGG | - | chr5_3:45703689-45703708 | Msa0814000:intron | 30.0% | |
| CAATAAGCAATTACTTTGGA+AGG | - | chr5_3:45703693-45703712 | Msa0814000:intron | 30.0% | |
| ACTTGCAGCAAAAATTAAAG+CGG | - | chr5_3:45703787-45703806 | Msa0814000:intron | 30.0% | |
| ! | AATTTGTTTGTTTGTTTGGG+AGG | + | chr5_3:45703909-45703928 | None:intergenic | 30.0% |
| !! | TATGCATGATTTTGAAAGAG+AGG | - | chr5_3:45704038-45704057 | Msa0814000:CDS | 30.0% |
| GTTAAAATTAGAACATGGTC+CGG | - | chr5_3:45704072-45704091 | Msa0814000:intron | 30.0% | |
| TGTTTGTTTCAATACAGAGA+CGG | + | chr5_3:45704286-45704305 | None:intergenic | 30.0% | |
| ACAAACAAATCAGATGTGTT+TGG | - | chr5_3:45704299-45704318 | Msa0814000:intron | 30.0% | |
| ! | ATCAGATGTGTTTGGATTTT+TGG | - | chr5_3:45704307-45704326 | Msa0814000:intron | 30.0% |
| ! | TATGAACAAAGTGTGTTACT+TGG | - | chr5_3:45704412-45704431 | Msa0814000:CDS | 30.0% |
| TATACTTACCCCATAAGAAA+CGG | + | chr5_3:45704440-45704459 | None:intergenic | 30.0% | |
| TTGTCCAAAGGATAATACAT+TGG | - | chr5_3:45704555-45704574 | Msa0814000:intron | 30.0% | |
| ACAACCAATGTATTATCCTT+TGG | + | chr5_3:45704562-45704581 | None:intergenic | 30.0% | |
| ! | GTTCTATCTTTTAGTGTGAT+AGG | + | chr5_3:45704681-45704700 | None:intergenic | 30.0% |
| !!! | ATTTTTTTAACCTAGTGCTC+TGG | - | chr5_3:45704712-45704731 | Msa0814000:CDS | 30.0% |
| CGTTAGATTTAAAAGATTGG+AGG | + | chr5_3:45704909-45704928 | None:intergenic | 30.0% | |
| AGCCGTTAGATTTAAAAGAT+TGG | + | chr5_3:45704912-45704931 | None:intergenic | 30.0% | |
| GGATATTTGAGAATATGTTG+GGG | + | chr5_3:45704974-45704993 | None:intergenic | 30.0% | |
| GGGATATTTGAGAATATGTT+GGG | + | chr5_3:45704975-45704994 | None:intergenic | 30.0% | |
| AGGGATATTTGAGAATATGT+TGG | + | chr5_3:45704976-45704995 | None:intergenic | 30.0% | |
| TAAAGAGTGGCAATTAAAGA+GGG | + | chr5_3:45704995-45705014 | None:intergenic | 30.0% | |
| TTAAAGAGTGGCAATTAAAG+AGG | + | chr5_3:45704996-45705015 | None:intergenic | 30.0% | |
| AGTCACGAAAAATTAAAGAG+TGG | + | chr5_3:45705008-45705027 | None:intergenic | 30.0% | |
| CCTTATAGAATCAAAACTCA+TGG | + | chr5_3:45705039-45705058 | None:intergenic | 30.0% | |
| !!! | CCATGAGTTTTGATTCTATA+AGG | - | chr5_3:45705036-45705055 | Msa0814000:CDS | 30.0% |
| TTTCTTCTCTTTCAATAACG+TGG | - | chr5_3:45705120-45705139 | Msa0814000:CDS | 30.0% | |
| AAAAATGTGGATTTAGTGCT+TGG | - | chr5_3:45705190-45705209 | Msa0814000:CDS | 30.0% | |
| AAAATGTGGATTTAGTGCTT+GGG | - | chr5_3:45705191-45705210 | Msa0814000:CDS | 30.0% | |
| TCATGCACATATAAAAGTAG+AGG | - | chr5_3:45705353-45705372 | Msa0814000:intron | 30.0% | |
| ! | TTGGGAAATCTTTGAGAAAT+TGG | - | chr5_3:45705410-45705429 | Msa0814000:CDS | 30.0% |
| TTCTCCTTGATTGTAAATTG+AGG | + | chr5_3:45705512-45705531 | None:intergenic | 30.0% | |
| ACTAATGTGAGCTATATTGT+AGG | + | chr5_3:45705595-45705614 | None:intergenic | 30.0% | |
| ! | CAATATTAATGGTGGAGATT+TGG | - | chr5_3:45705649-45705668 | Msa0814000:intron | 30.0% |
| GAAACTTAGGATTTATTAGG+AGG | - | chr5_3:45706087-45706106 | Msa0814000:intron | 30.0% | |
| CAATGTTTAATCAGTACTGT+TGG | - | chr5_3:45706120-45706139 | Msa0814000:CDS | 30.0% | |
| !! | GTTTGTTGTTATTTCTAGCT+GGG | - | chr5_3:45706142-45706161 | Msa0814000:CDS | 30.0% |
| ! | TGCGTTTTTCTTGTGTAAAC+AGG | - | chr5_3:45702392-45702411 | Msa0814000:three_prime_UTR | 35.0% |
| TAGGTTCACTAGATGAAGAA+GGG | + | chr5_3:45702441-45702460 | None:intergenic | 35.0% | |
| TTAGGTTCACTAGATGAAGA+AGG | + | chr5_3:45702442-45702461 | None:intergenic | 35.0% | |
| GAACCTAAAAAAAGGGTTAG+AGG | - | chr5_3:45702454-45702473 | Msa0814000:three_prime_UTR | 35.0% | |
| !!! | CAACCTCTAACCCTTTTTTT+AGG | + | chr5_3:45702460-45702479 | None:intergenic | 35.0% |
| ATTAACAAAGTTCGGACAAC+AGG | - | chr5_3:45702496-45702515 | Msa0814000:three_prime_UTR | 35.0% | |
| GTTCAGTTCGATTCAATAAC+CGG | - | chr5_3:45702532-45702551 | Msa0814000:three_prime_UTR | 35.0% | |
| TTCAGTTCGATTCAATAACC+GGG | - | chr5_3:45702533-45702552 | Msa0814000:three_prime_UTR | 35.0% | |
| TCAATAACCGGGAAATGTTA+TGG | - | chr5_3:45702544-45702563 | Msa0814000:three_prime_UTR | 35.0% | |
| !!! | AAAGGATCCTTTTTTGGATC+TGG | + | chr5_3:45702851-45702870 | None:intergenic | 35.0% |
| ! | GCGATCCAATATTTTCTCAA+AGG | + | chr5_3:45702869-45702888 | None:intergenic | 35.0% |
| AATATTGGATCGCATATGTG+GGG | - | chr5_3:45702876-45702895 | Msa0814000:intron | 35.0% | |
| ! | AAAGGATACATTTCAAGTGG+AGG | + | chr5_3:45702971-45702990 | None:intergenic | 35.0% |
| AGATATATGGGAGCAGTTTA+TGG | - | chr5_3:45703000-45703019 | Msa0814000:intron | 35.0% | |
| AGGAAAAAAGTCAAAAGGGT+AGG | - | chr5_3:45703136-45703155 | Msa0814000:intron | 35.0% | |
| GGAAAAAAGTCAAAAGGGTA+GGG | - | chr5_3:45703137-45703156 | Msa0814000:intron | 35.0% | |
| GAGATAATGTATGTGGGTAA+AGG | + | chr5_3:45703179-45703198 | None:intergenic | 35.0% | |
| AGAAAAAGAATGGAAGACTC+CGG | - | chr5_3:45703243-45703262 | Msa0814000:intron | 35.0% | |
| AAAGGAACATTTGTACCACA+AGG | - | chr5_3:45703593-45703612 | Msa0814000:intron | 35.0% | |
| AAGATATCTTTACGTCCTTG+TGG | + | chr5_3:45703611-45703630 | None:intergenic | 35.0% | |
| GATATCTTAACAGAGGCTAT+TGG | - | chr5_3:45703623-45703642 | Msa0814000:intron | 35.0% | |
| ! | AATTACTTTGGAAGGTCTTC+AGG | - | chr5_3:45703701-45703720 | Msa0814000:intron | 35.0% |
| TGACATTTATGCTTTGCGTT+GGG | + | chr5_3:45703727-45703746 | None:intergenic | 35.0% | |
| ! | TTTGTTTGTTTGGGAGGTAT+CGG | + | chr5_3:45703903-45703922 | None:intergenic | 35.0% |
| !! | AATTGAACCCTGTTCTGAAA+AGG | - | chr5_3:45703925-45703944 | Msa0814000:intron | 35.0% |
| ! | ACAACAACCTTTTCAGAACA+GGG | + | chr5_3:45703935-45703954 | None:intergenic | 35.0% |
| TCTGAAAAGGTTGTTGTGTT+AGG | - | chr5_3:45703938-45703957 | Msa0814000:intron | 35.0% | |
| AACTTTCTGAACATTGTCAG+TGG | + | chr5_3:45704017-45704036 | None:intergenic | 35.0% | |
| TGAAAGAGAGGCAATATCTA+AGG | - | chr5_3:45704050-45704069 | Msa0814000:intron | 35.0% | |
| ! | GTTAAAGACTTATTGGTTGG+CGG | - | chr5_3:45704127-45704146 | Msa0814000:intron | 35.0% |
| ! | TTAAAGACTTATTGGTTGGC+GGG | - | chr5_3:45704128-45704147 | Msa0814000:intron | 35.0% |
| !! | AACTGGTTCTGTATTCATTG+CGG | + | chr5_3:45704363-45704382 | None:intergenic | 35.0% |
| GTTCGTATGTAGGATTTAAC+TGG | + | chr5_3:45704380-45704399 | None:intergenic | 35.0% | |
| TTTACGTGTATAGAGCACAT+TGG | - | chr5_3:45704518-45704537 | Msa0814000:intron | 35.0% | |
| ATTGATCGTCATTTGTCCAA+AGG | - | chr5_3:45704543-45704562 | Msa0814000:intron | 35.0% | |
| GATCTTGGTTAAGTGAACAA+AGG | + | chr5_3:45704585-45704604 | None:intergenic | 35.0% | |
| TCATTGTTGTGTCAAGATCT+TGG | + | chr5_3:45704600-45704619 | None:intergenic | 35.0% | |
| AGATCTTGACACAACAATGA+AGG | - | chr5_3:45704600-45704619 | Msa0814000:CDS | 35.0% | |
| GAGGTTCATCAATTAGCAAA+CGG | - | chr5_3:45704734-45704753 | Msa0814000:CDS | 35.0% | |
| ATCTTGTCTACACATACCTT+AGG | + | chr5_3:45704788-45704807 | None:intergenic | 35.0% | |
| TAAGGTATGTGTAGACAAGA+TGG | - | chr5_3:45704787-45704806 | Msa0814000:CDS | 35.0% | |
| TAAGTGTGTAGACTTACTCT+TGG | + | chr5_3:45704872-45704891 | None:intergenic | 35.0% | |
| AAGATTGGAGGGTTAAGATT+TGG | + | chr5_3:45704897-45704916 | None:intergenic | 35.0% | |
| ATTTGAGAATATGTTGGGGA+AGG | + | chr5_3:45704970-45704989 | None:intergenic | 35.0% | |
| AGAGCCTCAATTTACAATCA+AGG | - | chr5_3:45705505-45705524 | Msa0814000:CDS | 35.0% | |
| TATCCACAATCAGTTGTGTT+AGG | + | chr5_3:45705823-45705842 | None:intergenic | 35.0% | |
| CTGCTAATATTACTACCTCT+TGG | - | chr5_3:45705875-45705894 | Msa0814000:CDS | 35.0% | |
| TATTACTACCTCTTGGATGA+AGG | - | chr5_3:45705882-45705901 | Msa0814000:CDS | 35.0% | |
| !! | GGTTTGTTGTTATTTCTAGC+TGG | - | chr5_3:45706141-45706160 | Msa0814000:CDS | 35.0% |
| ! | ATGAACCTTCTTGTTTGTTG+TGG | - | chr5_3:45706272-45706291 | Msa0814000:CDS | 35.0% |
| !!! | CATGTACCCTTCTTGTTTTT+TGG | - | chr5_3:45706298-45706317 | Msa0814000:CDS | 35.0% |
| CAGCAACCAAAAAACAAGAA+GGG | + | chr5_3:45706307-45706326 | None:intergenic | 35.0% | |
| ACAGCAACCAAAAAACAAGA+AGG | + | chr5_3:45706308-45706327 | None:intergenic | 35.0% | |
| TTCTTGTGTAAACAGGCACA+TGG | - | chr5_3:45702399-45702418 | Msa0814000:three_prime_UTR | 40.0% | |
| ACTAGATGAAGAAGGGATGT+CGG | + | chr5_3:45702434-45702453 | None:intergenic | 40.0% | |
| GACAACAGGTGTGAAGATAA+AGG | - | chr5_3:45702510-45702529 | Msa0814000:three_prime_UTR | 40.0% | |
| GGATCTGGATTATCACTTTC+TGG | + | chr5_3:45702836-45702855 | None:intergenic | 40.0% | |
| ATATTGGATCGCATATGTGG+GGG | - | chr5_3:45702877-45702896 | Msa0814000:intron | 40.0% | |
| ! | GATACATTTCAAGTGGAGGA+CGG | + | chr5_3:45702967-45702986 | None:intergenic | 40.0% |
| TCGAAAGACCCCTGAATTTA+AGG | - | chr5_3:45703027-45703046 | Msa0814000:intron | 40.0% | |
| TACCCACATACATTATCTCG+TGG | - | chr5_3:45703180-45703199 | Msa0814000:intron | 40.0% | |
| CTCCACGAGATAATGTATGT+GGG | + | chr5_3:45703185-45703204 | None:intergenic | 40.0% | |
| !! | GGAGGATATGATTTGCTTGA+AGG | - | chr5_3:45703201-45703220 | Msa0814000:intron | 40.0% |
| TTCCATTTGTCATGACGTGA+CGG | + | chr5_3:45703294-45703313 | None:intergenic | 40.0% | |
| ! | AAGAGAGCACGACAAAAGAA+AGG | - | chr5_3:45703312-45703331 | Msa0814000:intron | 40.0% |
| ! | AGAGAGCACGACAAAAGAAA+GGG | - | chr5_3:45703313-45703332 | Msa0814000:intron | 40.0% |
| TTTGCAAATGTAGGACTCGT+TGG | - | chr5_3:45703556-45703575 | Msa0814000:intron | 40.0% | |
| CTGACATTTATGCTTTGCGT+TGG | + | chr5_3:45703728-45703747 | None:intergenic | 40.0% | |
| TATGGAGACACTCAAGACTA+TGG | - | chr5_3:45703871-45703890 | Msa0814000:intron | 40.0% | |
| ATGGAGACACTCAAGACTAT+GGG | - | chr5_3:45703872-45703891 | Msa0814000:intron | 40.0% | |
| ! | CACAACAACCTTTTCAGAAC+AGG | + | chr5_3:45703936-45703955 | None:intergenic | 40.0% |
| ! | TAAAGACTTATTGGTTGGCG+GGG | - | chr5_3:45704129-45704148 | Msa0814000:intron | 40.0% |
| ACGCAACTTAGTTCGTATGT+AGG | + | chr5_3:45704390-45704409 | None:intergenic | 40.0% | |
| TTACTTGGCACCGTTTCTTA+TGG | - | chr5_3:45704427-45704446 | Msa0814000:CDS | 40.0% | |
| TACTTGGCACCGTTTCTTAT+GGG | - | chr5_3:45704428-45704447 | Msa0814000:CDS | 40.0% | |
| ! | TTTTTAACCTAGTGCTCTGG+AGG | - | chr5_3:45704715-45704734 | Msa0814000:CDS | 40.0% |
| TTTAGTGCTTGGGATATGAG+TGG | - | chr5_3:45705201-45705220 | Msa0814000:intron | 40.0% | |
| ! | AGATGTTGGTGAAGAGATGT+TGG | - | chr5_3:45705544-45705563 | Msa0814000:CDS | 40.0% |
| CAACCTAACACAACTGATTG+TGG | - | chr5_3:45705817-45705836 | Msa0814000:CDS | 40.0% | |
| ATGGTATACCTTCATCCAAG+AGG | + | chr5_3:45705893-45705912 | None:intergenic | 40.0% | |
| TGTATGCTTTGCGAAACGAT+TGG | - | chr5_3:45706040-45706059 | Msa0814000:intron | 40.0% | |
| GTATGCTTTGCGAAACGATT+GGG | - | chr5_3:45706041-45706060 | Msa0814000:intron | 40.0% | |
| !! | TTTCTAGCTGGGAGATATGT+TGG | - | chr5_3:45706153-45706172 | Msa0814000:CDS | 40.0% |
| TGCATCCACAACAAACAAGA+AGG | + | chr5_3:45706280-45706299 | None:intergenic | 40.0% | |
| CCTCCACGAGATAATGTATG+TGG | + | chr5_3:45703186-45703205 | None:intergenic | 45.0% | |
| CCACATACATTATCTCGTGG+AGG | - | chr5_3:45703183-45703202 | Msa0814000:intron | 45.0% | |
| ! | GAGAGCACGACAAAAGAAAG+GGG | - | chr5_3:45703314-45703333 | Msa0814000:intron | 45.0% |
| AGAGCACGACAAAAGAAAGG+GGG | - | chr5_3:45703315-45703334 | Msa0814000:intron | 45.0% | |
| AGCAGAGTTCGAACAACAGA+TGG | - | chr5_3:45703817-45703836 | Msa0814000:intron | 45.0% | |
| ! | GTTGTGTTAGGAAGCGCAAA+AGG | - | chr5_3:45703950-45703969 | Msa0814000:intron | 45.0% |
| TGCAGCACAAGAAAATCGCA+AGG | - | chr5_3:45703982-45704001 | Msa0814000:intron | 45.0% | |
| AAGAAAATCGCAAGGACGAC+TGG | - | chr5_3:45703990-45704009 | Msa0814000:intron | 45.0% | |
| ACTTGGCACCGTTTCTTATG+GGG | - | chr5_3:45704429-45704448 | Msa0814000:CDS | 45.0% | |
| ! | ACACTCATGTGATCCGCTTT+TGG | - | chr5_3:45704940-45704959 | Msa0814000:CDS | 45.0% |
| TGGGGAAGGAAATCCAAAAG+CGG | + | chr5_3:45704956-45704975 | None:intergenic | 45.0% | |
| CTTCATGGCTCGTTAACATC+AGG | + | chr5_3:45705465-45705484 | None:intergenic | 45.0% | |
| CTGATGTTAACGAGCCATGA+AGG | - | chr5_3:45705463-45705482 | Msa0814000:CDS | 45.0% | |
| TCTTCACCAACATCTCTCCA+CGG | + | chr5_3:45705539-45705558 | None:intergenic | 45.0% | |
| !!! | TAATGAATTTTATTTATAAT+AGG | - | chr5_3:45703116-45703135 | Msa0814000:intron | 5.0% |
| !! | TATATATATATATATATATG+GGG | + | chr5_3:45705715-45705734 | None:intergenic | 5.0% |
| ! | ACATTTCAAGTGGAGGACGG+CGG | + | chr5_3:45702964-45702983 | None:intergenic | 50.0% |
| CATTTGTCATGACGTGACGG+CGG | + | chr5_3:45703291-45703310 | None:intergenic | 50.0% | |
| GCTATTGGAACATCCGAGCA+TGG | - | chr5_3:45703638-45703657 | Msa0814000:intron | 50.0% | |
| ATTGGAACATCCGAGCATGG+TGG | - | chr5_3:45703641-45703660 | Msa0814000:intron | 50.0% | |
| TAGCACCTCTTCCAACACCA+CGG | + | chr5_3:45703673-45703692 | None:intergenic | 50.0% | |
| TTGCATCAACTGATGCGCTG+TGG | + | chr5_3:45703843-45703862 | None:intergenic | 50.0% | |
| ! | TGATGAACCTCCAGAGCACT+AGG | + | chr5_3:45704725-45704744 | None:intergenic | 50.0% |
| TGCTTGGGATATGAGTGGCA+GGG | - | chr5_3:45705206-45705225 | Msa0814000:intron | 50.0% | |
| CGCCGTCACGTCATGACAAA+TGG | - | chr5_3:45703289-45703308 | Msa0814000:intron | 55.0% | |
| ! | ACTTATTGGTTGGCGGGGCT+TGG | - | chr5_3:45704134-45704153 | Msa0814000:intron | 55.0% |
| !! | GGTTCGTTGGCTTCGTCCTA+AGG | - | chr5_3:45704769-45704788 | Msa0814000:CDS | 55.0% |
| GTGCTTGGGATATGAGTGGC+AGG | - | chr5_3:45705205-45705224 | Msa0814000:intron | 55.0% | |
| GGGATATGAGTGGCAGGGAA+TGG | - | chr5_3:45705211-45705230 | Msa0814000:intron | 55.0% | |
| CAATCAAGGAGAAGACGCCG+TGG | - | chr5_3:45705519-45705538 | Msa0814000:CDS | 55.0% | |
| AAGACGCCGTGGAGAGATGT+TGG | - | chr5_3:45705530-45705549 | Msa0814000:CDS | 55.0% | |
| GGATCGCATATGTGGGGGAG+CGG | - | chr5_3:45702882-45702901 | Msa0814000:CDS | 60.0% | |
| AAGTGGAGGACGGCGGTCTT+TGG | + | chr5_3:45702957-45702976 | None:intergenic | 60.0% | |
| TCATGACGTGACGGCGGAGA+TGG | + | chr5_3:45703285-45703304 | None:intergenic | 60.0% | |
| ACGGACACGACCACCATGCT+CGG | + | chr5_3:45703654-45703673 | None:intergenic | 60.0% | |
| ! | CGTGTCCGTGGTGTTGGAAG+AGG | - | chr5_3:45703665-45703684 | Msa0814000:intron | 60.0% |
| TCGCATATGTGGGGGAGCGG+TGG | - | chr5_3:45702885-45702904 | Msa0814000:CDS | 65.0% | |
| TATGTGGGGGAGCGGTGGAG+AGG | - | chr5_3:45702890-45702909 | Msa0814000:CDS | 65.0% | |
| GGAGGACGGCGGTCTTTGGA+AGG | + | chr5_3:45702953-45702972 | None:intergenic | 65.0% | |
| GAGCATGGTGGTCGTGTCCG+TGG | - | chr5_3:45703653-45703672 | Msa0814000:intron | 65.0% | |
| GGTGGTCGTGTCCGTGGTGT+TGG | - | chr5_3:45703659-45703678 | Msa0814000:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 45702361 | 45706423 | 45702361 | ID=Msa0814000;Name=Msa0814000 |
| chr5_3 | mRNA | 45702361 | 45706423 | 45702361 | ID=Msa0814000-mRNA-1;Parent=Msa0814000;Name=Msa0814000-mRNA-1;_AED=0.20;_eAED=0.20;_QI=0|1|0.88|1|1|1|9|328|652 |
| chr5_3 | exon | 45702361 | 45702781 | 45702361 | ID=Msa0814000-mRNA-1:exon:13906;Parent=Msa0814000-mRNA-1 |
| chr5_3 | exon | 45702881 | 45702976 | 45702881 | ID=Msa0814000-mRNA-1:exon:13905;Parent=Msa0814000-mRNA-1 |
| chr5_3 | exon | 45703994 | 45704057 | 45703994 | ID=Msa0814000-mRNA-1:exon:13904;Parent=Msa0814000-mRNA-1 |
| chr5_3 | exon | 45704149 | 45704253 | 45704149 | ID=Msa0814000-mRNA-1:exon:13903;Parent=Msa0814000-mRNA-1 |
| chr5_3 | exon | 45704334 | 45704510 | 45704334 | ID=Msa0814000-mRNA-1:exon:13902;Parent=Msa0814000-mRNA-1 |
| chr5_3 | exon | 45704596 | 45705215 | 45704596 | ID=Msa0814000-mRNA-1:exon:13901;Parent=Msa0814000-mRNA-1 |
| chr5_3 | exon | 45705404 | 45705646 | 45705404 | ID=Msa0814000-mRNA-1:exon:13900;Parent=Msa0814000-mRNA-1 |
| chr5_3 | exon | 45705736 | 45705966 | 45705736 | ID=Msa0814000-mRNA-1:exon:13899;Parent=Msa0814000-mRNA-1 |
| chr5_3 | exon | 45706094 | 45706423 | 45706094 | ID=Msa0814000-mRNA-1:exon:13898;Parent=Msa0814000-mRNA-1 |
| chr5_3 | CDS | 45706094 | 45706423 | 45706094 | ID=Msa0814000-mRNA-1:cds;Parent=Msa0814000-mRNA-1 |
| chr5_3 | CDS | 45705736 | 45705966 | 45705736 | ID=Msa0814000-mRNA-1:cds;Parent=Msa0814000-mRNA-1 |
| chr5_3 | CDS | 45705404 | 45705646 | 45705404 | ID=Msa0814000-mRNA-1:cds;Parent=Msa0814000-mRNA-1 |
| chr5_3 | CDS | 45704596 | 45705215 | 45704596 | ID=Msa0814000-mRNA-1:cds;Parent=Msa0814000-mRNA-1 |
| chr5_3 | CDS | 45704334 | 45704510 | 45704334 | ID=Msa0814000-mRNA-1:cds;Parent=Msa0814000-mRNA-1 |
| chr5_3 | CDS | 45704149 | 45704253 | 45704149 | ID=Msa0814000-mRNA-1:cds;Parent=Msa0814000-mRNA-1 |
| chr5_3 | CDS | 45703994 | 45704057 | 45703994 | ID=Msa0814000-mRNA-1:cds;Parent=Msa0814000-mRNA-1 |
| chr5_3 | CDS | 45702881 | 45702976 | 45702881 | ID=Msa0814000-mRNA-1:cds;Parent=Msa0814000-mRNA-1 |
| chr5_3 | CDS | 45702689 | 45702781 | 45702689 | ID=Msa0814000-mRNA-1:cds;Parent=Msa0814000-mRNA-1 |
| chr5_3 | three_prime_UTR | 45702361 | 45702688 | 45702361 | ID=Msa0814000-mRNA-1:three_prime_utr;Parent=Msa0814000-mRNA-1 |
| Gene Sequence |
| Protein sequence |
