Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0058820 | RHN51483.1 | 60.563 | 639 | 221 | 6 | 20 | 650 | 1 | 616 | 0.0 | 768 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0058820 | A0A396HFX6 | 60.563 | 639 | 221 | 6 | 20 | 650 | 1 | 616 | 0.0 | 768 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0058820 | Msa0116770 | 0.802258 | 6.110836e-49 | -8.615850e-47 |
| Msa0058820 | Msa0188830 | 0.808278 | 3.349911e-50 | -8.615850e-47 |
| Msa0058820 | Msa0214300 | 0.805420 | 1.346380e-49 | -8.615850e-47 |
| Msa0058820 | Msa0222890 | 0.802681 | 4.999577e-49 | -8.615850e-47 |
| Msa0058820 | Msa0414230 | 0.800945 | 1.135579e-48 | -8.615850e-47 |
| Msa0058820 | Msa0432300 | 0.818297 | 2.109301e-52 | -8.615850e-47 |
| Msa0058820 | Msa0484780 | 0.819870 | 9.254572e-53 | -8.615850e-47 |
| Msa0058820 | Msa0512900 | 0.800300 | 1.537609e-48 | -8.615850e-47 |
| Msa0058820 | Msa0532350 | 0.800040 | 1.736602e-48 | -8.615850e-47 |
| Msa0058820 | Msa0558690 | 0.800516 | 1.389530e-48 | -8.615850e-47 |
| Msa0058820 | Msa0657970 | 0.811828 | 5.757960e-51 | -8.615850e-47 |
| Msa0058820 | Msa0693380 | 0.811245 | 7.711191e-51 | -8.615850e-47 |
| Msa0058820 | Msa0766630 | 0.819062 | 1.414692e-52 | -8.615850e-47 |
| Msa0058820 | Msa0769920 | 0.813510 | 2.467717e-51 | -8.615850e-47 |
| Msa0058820 | Msa0777790 | 0.801046 | 1.082889e-48 | -8.615850e-47 |
| Msa0058820 | Msa0814000 | 0.857038 | 2.142466e-62 | -8.615850e-47 |
| Msa0058820 | Msa0825340 | 0.800736 | 1.253122e-48 | -8.615850e-47 |
| Msa0058820 | Msa0885280 | 0.805731 | 1.158624e-49 | -8.615850e-47 |
| Msa0058820 | Msa0909120 | 0.801571 | 8.456946e-49 | -8.615850e-47 |
| Msa0058820 | Msa0918220 | 0.811510 | 6.752350e-51 | -8.615850e-47 |
| Msa0058820 | Msa0935910 | 0.827168 | 1.815494e-54 | -8.615850e-47 |
| Msa0058820 | Msa0975220 | 0.813059 | 3.100018e-51 | -8.615850e-47 |
| Msa0058820 | Msa1014540 | 0.814094 | 1.834940e-51 | -8.615850e-47 |
| Msa0058820 | Msa1082500 | 0.825835 | 3.773591e-54 | -8.615850e-47 |
| Msa0058820 | Msa1249490 | 0.807427 | 5.080661e-50 | -8.615850e-47 |
| Msa0058820 | Msa1324780 | 0.801539 | 8.583655e-49 | -8.615850e-47 |
| Msa0058820 | Msa1333410 | 0.811512 | 6.745141e-51 | -8.615850e-47 |
| Msa0058820 | Msa1340270 | 0.800984 | 1.115055e-48 | -8.615850e-47 |
| Msa0058820 | Msa1384350 | 0.803856 | 2.854799e-49 | -8.615850e-47 |
| Msa0058820 | Msa1392260 | 0.804034 | 2.622105e-49 | -8.615850e-47 |
| Msa0058820 | Msa1411020 | 0.802534 | 5.360579e-49 | -8.615850e-47 |
| Msa0058820 | Msa1429900 | 0.807599 | 4.672379e-50 | -8.615850e-47 |
| Msa0058820 | Msa1463670 | 0.816238 | 6.128984e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0058820 | MtrunA17_Chr6g0469071 | 60.563 | 639 | 221 | 6 | 20 | 650 | 1 | 616 | 0.0 | 768 |
| Msa0058820 | MtrunA17_Chr1g0153901 | 60.623 | 546 | 200 | 6 | 20 | 556 | 1 | 540 | 0.0 | 654 |
| Msa0058820 | MtrunA17_Chr2g0325841 | 48.105 | 343 | 157 | 8 | 17 | 348 | 486 | 818 | 6.74e-87 | 295 |
| Msa0058820 | MtrunA17_Chr2g0325841 | 35.685 | 241 | 149 | 3 | 412 | 651 | 962 | 1197 | 1.26e-43 | 169 |
| Msa0058820 | MtrunA17_Chr5g0434431 | 66.477 | 176 | 59 | 0 | 477 | 652 | 1 | 176 | 1.39e-83 | 260 |
| Msa0058820 | MtrunA17_Chr8g0357811 | 90.826 | 109 | 10 | 0 | 427 | 535 | 1 | 109 | 5.36e-66 | 212 |
| Msa0058820 | MtrunA17_Chr4g0010671 | 38.046 | 389 | 199 | 8 | 29 | 415 | 13 | 361 | 4.00e-63 | 219 |
| Msa0058820 | MtrunA17_Chr1g0174011 | 71.429 | 98 | 28 | 0 | 555 | 652 | 1 | 98 | 1.66e-44 | 154 |
| Msa0058820 | MtrunA17_Chr1g0153911 | 73.333 | 90 | 24 | 0 | 563 | 652 | 1 | 90 | 1.20e-41 | 145 |
| Msa0058820 | MtrunA17_Chr2g0287771 | 52.778 | 108 | 51 | 0 | 427 | 534 | 1 | 108 | 1.66e-36 | 132 |
| Msa0058820 | MtrunA17_Chr2g0321271 | 91.667 | 48 | 4 | 0 | 605 | 652 | 1 | 48 | 1.75e-22 | 90.9 |
| Msa0058820 | MtrunA17_Chr6g0466851 | 28.041 | 296 | 181 | 9 | 21 | 310 | 22 | 291 | 1.21e-20 | 96.7 |
| Msa0058820 | MtrunA17_Chr4g0033251 | 71.429 | 49 | 13 | 1 | 605 | 652 | 1 | 49 | 3.87e-16 | 72.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 120 sgRNAs with CRISPR-Local
Find 195 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCGAAAGACCCCTGAATTTA+AGG | 0.126971 | 1_2:-15469250 | Msa0058820:intron |
| AATAAGTCTTTAACATATTT+TGG | 0.127701 | 1_2:+15468160 | None:intergenic |
| GGATCTGGATTATCACTTTC+TGG | 0.134380 | 1_2:+15469444 | None:intergenic |
| AAAATATGTTAAAGACTTAT+TGG | 0.154099 | 1_2:-15468158 | Msa0058820:CDS |
| ATTCTACAAAAGACTCAATT+TGG | 0.193583 | 1_2:-15469611 | Msa0058820:CDS |
| GTTCAATTTGTTTGTTTGTT+TGG | 0.205277 | 1_2:+15468368 | None:intergenic |
| AGATATATGGGAGCAGTTTA+TGG | 0.218472 | 1_2:-15469277 | Msa0058820:CDS |
| TTCAATTTGTTTGTTTGTTT+GGG | 0.218589 | 1_2:+15468369 | None:intergenic |
| TATGAAACTTAGGATTTATT+AGG | 0.242704 | 1_2:-15467097 | Msa0058820:exon |
| TTACTTGGCACCGTTTCTTA+TGG | 0.263856 | 1_2:-15467851 | Msa0058820:CDS |
| CTCAATTTGGAATGATCTTA+AGG | 0.302476 | 1_2:-15469598 | Msa0058820:intron |
| AGGATCCTTTGAGAAAATAT+TGG | 0.308538 | 1_2:-15469416 | Msa0058820:CDS |
| TGAAAGAGAGGCAATATCTA+AGG | 0.309941 | 1_2:-15468228 | Msa0058820:CDS |
| ACTATTCTATTCTACAAGTT+TGG | 0.312483 | 1_2:-15468117 | Msa0058820:CDS |
| ATTAAGAAATTTATGACTTC+CGG | 0.313134 | 1_2:+15468187 | None:intergenic |
| GTTCGTATGTAGGATTTAAC+TGG | 0.316883 | 1_2:+15467901 | None:intergenic |
| TATGGAGACACTCAAGACTA+TGG | 0.329517 | 1_2:-15468407 | Msa0058820:CDS |
| CGTATACTAACCTTAAATTC+AGG | 0.342289 | 1_2:+15469240 | None:intergenic |
| GTTCAGTTCGATTCAATAAC+CGG | 0.349998 | 1_2:-15469735 | Msa0058820:CDS |
| ACAAACAAATCAAATGTGTT+TGG | 0.350566 | 1_2:-15467979 | Msa0058820:CDS |
| GGTTTGTTGTTATTTCTAGC+TGG | 0.359699 | 1_2:-15467040 | Msa0058820:three_prime_UTR |
| ACTTATTGGTTGGCGGGGCT+TGG | 0.371267 | 1_2:-15468144 | Msa0058820:CDS |
| TCTTGAATTGTATGAAACTT+AGG | 0.371464 | 1_2:-15467107 | Msa0058820:exon |
| AAGTGGAGGACGGCGGTCTT+TGG | 0.371833 | 1_2:+15469323 | None:intergenic |
| CGCCGTCACGTCATGACAAA+TGG | 0.380342 | 1_2:-15468989 | Msa0058820:CDS |
| TATCCACAATCAGTTGTGTT+AGG | 0.390652 | 1_2:+15467361 | None:intergenic |
| AATTACTTTGGAAGGTCTTC+AGG | 0.392675 | 1_2:-15468577 | Msa0058820:CDS |
| GATATCTTAACAGAGGCTAT+TGG | 0.404368 | 1_2:-15468655 | Msa0058820:CDS |
| TCATTGTTGTGTCAAGATCT+TGG | 0.404397 | 1_2:+15467681 | None:intergenic |
| ACAACCAATGTATTATCCTT+TGG | 0.410346 | 1_2:+15467719 | None:intergenic |
| AAGAAAATCGCAAGGACGAC+TGG | 0.418454 | 1_2:-15468288 | Msa0058820:CDS |
| GTTTGTTGTTATTTCTAGCT+GGG | 0.421292 | 1_2:-15467039 | Msa0058820:three_prime_UTR |
| GATTTAATTAGACATGCGTT+TGG | 0.424806 | 1_2:-15469919 | None:intergenic |
| TCAATAACCGGGAAATGTTA+TGG | 0.430918 | 1_2:-15469723 | Msa0058820:CDS |
| TTTGTTTGTTTGGGAGGTAT+CGG | 0.435440 | 1_2:+15468378 | None:intergenic |
| ATTAACAAAGTTCGGACAAC+AGG | 0.435654 | 1_2:-15469771 | Msa0058820:CDS |
| GGAGGATATGATTTGCTTGA+AGG | 0.436531 | 1_2:-15469077 | Msa0058820:CDS |
| AATTTGTTTGTTTGTTTGGG+AGG | 0.440214 | 1_2:+15468372 | None:intergenic |
| GACAACAGGTGTGAAAATAA+AGG | 0.441580 | 1_2:-15469757 | Msa0058820:CDS |
| GGTGGTCGTGTCCGTGGTGT+TGG | 0.446741 | 1_2:-15468619 | Msa0058820:CDS |
| GTATGCTTTGCGAAACGATT+GGG | 0.447406 | 1_2:-15467140 | Msa0058820:CDS |
| TCATGACGTGACGGCGGAGA+TGG | 0.448686 | 1_2:+15468996 | None:intergenic |
| TATGTTAAAGACTTATTGGT+TGG | 0.451274 | 1_2:-15468154 | Msa0058820:CDS |
| TTTCTAGCTGGGAGATATGT+TGG | 0.453566 | 1_2:-15467028 | Msa0058820:three_prime_UTR |
| CAATGTTTAATTAGTACTGT+TGG | 0.456089 | 1_2:-15467061 | Msa0058820:three_prime_UTR |
| CTGCTAATATTACTACCTCT+TGG | 0.458064 | 1_2:-15467306 | Msa0058820:CDS |
| AAAATATTGGATCGCATATG+TGG | 0.460351 | 1_2:-15469403 | Msa0058820:CDS |
| GCTACAATAAGCAATTACTT+TGG | 0.470922 | 1_2:-15468589 | Msa0058820:CDS |
| GGTTCGTTGGCTTCGTCCTA+AGG | 0.473165 | 1_2:-15467509 | Msa0058820:intron |
| ATGAACCTTCTTGTTTGTTG+TGG | 0.474107 | 1_2:-15466909 | Msa0058820:three_prime_UTR |
| TTAAAGACTTATTGGTTGGC+GGG | 0.476031 | 1_2:-15468150 | Msa0058820:CDS |
| TGACATTTATGCTTTGCGTT+GGG | 0.484623 | 1_2:+15468554 | None:intergenic |
| CCTCCACGAGATAATGTATG+TGG | 0.495099 | 1_2:+15469095 | None:intergenic |
| GTTAAAATTAGAACATGGTC+CGG | 0.496286 | 1_2:-15468206 | Msa0058820:CDS |
| GAAACTTAGGATTTATTAGG+AGG | 0.497449 | 1_2:-15467094 | Msa0058820:exon |
| ATTTAATTTGGTACTGTACC+AGG | 0.504056 | 1_2:-15466754 | Msa0058820:three_prime_UTR |
| AGAGAGCACGACAAAAGAAA+GGG | 0.507249 | 1_2:-15468965 | Msa0058820:CDS |
| TTAGGTTCACTAGATGAAGA+AGG | 0.507451 | 1_2:+15469828 | None:intergenic |
| CGTGTCCGTGGTGTTGGAAG+AGG | 0.509158 | 1_2:-15468613 | Msa0058820:CDS |
| CTGACATTTATGCTTTGCGT+TGG | 0.511393 | 1_2:+15468553 | None:intergenic |
| TTTGCTTGAAGGTATAATGA+TGG | 0.512127 | 1_2:-15469066 | Msa0058820:CDS |
| CAACCTAACACAACTGATTG+TGG | 0.514100 | 1_2:-15467364 | Msa0058820:CDS |
| ACGCAACTTAGTTCGTATGT+AGG | 0.519497 | 1_2:+15467891 | None:intergenic |
| GTTAAAGACTTATTGGTTGG+CGG | 0.520213 | 1_2:-15468151 | Msa0058820:CDS |
| AAGAGAGCACGACAAAAGAA+AGG | 0.521144 | 1_2:-15468966 | Msa0058820:CDS |
| GTATACTAACCTTAAATTCA+GGG | 0.523147 | 1_2:+15469241 | None:intergenic |
| GAGATAATGTATGTGGGTAA+AGG | 0.527971 | 1_2:+15469102 | None:intergenic |
| TGTATGCTTTGCGAAACGAT+TGG | 0.532235 | 1_2:-15467141 | Msa0058820:CDS |
| GTTGTGTTAGGAAGCGCAAA+AGG | 0.533308 | 1_2:-15468328 | Msa0058820:CDS |
| TATTACTACCTCTTGGATGA+AGG | 0.535487 | 1_2:-15467299 | Msa0058820:intron |
| CAATAAGCAATTACTTTGGA+AGG | 0.536532 | 1_2:-15468585 | Msa0058820:CDS |
| ACGGACACGACCACCATGCT+CGG | 0.542869 | 1_2:+15468627 | None:intergenic |
| ATTAATCGTCATTTGTCCAA+AGG | 0.543300 | 1_2:-15467735 | Msa0058820:CDS |
| TAGGTTCACTAGATGAAGAA+GGG | 0.546611 | 1_2:+15469829 | None:intergenic |
| TATACTTACTCCATAAGAAA+CGG | 0.550414 | 1_2:+15467841 | None:intergenic |
| GGAGGACGGCGGTCTTTGGA+AGG | 0.551018 | 1_2:+15469327 | None:intergenic |
| AGATCTTGACACAACAATGA+AGG | 0.553286 | 1_2:-15467678 | Msa0058820:CDS |
| ATGGAGACACTCAAGACTAT+GGG | 0.554867 | 1_2:-15468406 | Msa0058820:CDS |
| TTTGCAAATGTAGGACTCGT+TGG | 0.555861 | 1_2:-15468722 | Msa0058820:intron |
| GAGGTTCATCAATTAGCAAA+CGG | 0.557640 | 1_2:-15467544 | Msa0058820:CDS |
| AGAAAAGGATACATTTCAAG+TGG | 0.560174 | 1_2:+15469306 | None:intergenic |
| AGCAGAGTTCGAACAACAGA+TGG | 0.568553 | 1_2:-15468461 | Msa0058820:CDS |
| AAATATTGGATCGCATATGT+GGG | 0.575901 | 1_2:-15469402 | Msa0058820:CDS |
| TATGAACAAAGTGTGTTACT+TGG | 0.580249 | 1_2:-15467866 | Msa0058820:CDS |
| TTGTCCAAAGGATAATACAT+TGG | 0.585455 | 1_2:-15467723 | Msa0058820:CDS |
| AACTGGTTCTGTATTCATTG+CGG | 0.587743 | 1_2:+15467918 | None:intergenic |
| TTCCATTTGTCATGACGTGA+CGG | 0.588309 | 1_2:+15468987 | None:intergenic |
| TAAAGACTTATTGGTTGGCG+GGG | 0.591849 | 1_2:-15468149 | Msa0058820:CDS |
| TTCAGTTCGATTCAATAACC+GGG | 0.592008 | 1_2:-15469734 | Msa0058820:CDS |
| AAGATATCTTTACGTCCTTG+TGG | 0.596126 | 1_2:+15468670 | None:intergenic |
| TACATCCACAACAAACAAGA+AGG | 0.605162 | 1_2:+15466904 | None:intergenic |
| TACCCACATACATTATCTCG+TGG | 0.605189 | 1_2:-15469098 | Msa0058820:CDS |
| TTTACGTGTATAGAGCACAT+TGG | 0.609577 | 1_2:-15467760 | Msa0058820:intron |
| GAGAGCACGACAAAAGAAAG+GGG | 0.611004 | 1_2:-15468964 | Msa0058820:CDS |
| TTCTTGTGTAAACAGGCACA+TGG | 0.611497 | 1_2:-15469868 | Msa0058820:CDS |
| AAAGGATACATTTCAAGTGG+AGG | 0.617115 | 1_2:+15469309 | None:intergenic |
| TGTTTGTTTCAATACAGAGA+CGG | 0.620395 | 1_2:+15467995 | None:intergenic |
| TATACTAACCTTAAATTCAG+GGG | 0.621254 | 1_2:+15469242 | None:intergenic |
| GCTATTGGAACATCCGAGCA+TGG | 0.623254 | 1_2:-15468640 | Msa0058820:CDS |
| CACTTTCTGAACATTGTCAG+TGG | 0.626212 | 1_2:+15468264 | None:intergenic |
| GATACATTTCAAGTGGAGGA+CGG | 0.634298 | 1_2:+15469313 | None:intergenic |
| ACTAGATGAAGAAGGGATGT+CGG | 0.635996 | 1_2:+15469836 | None:intergenic |
| GATCTTGGTTAAGTGAACAA+AGG | 0.637507 | 1_2:+15467696 | None:intergenic |
| GAGCATGGTGGTCGTGTCCG+TGG | 0.646629 | 1_2:-15468625 | Msa0058820:CDS |
| CTCCACGAGATAATGTATGT+GGG | 0.647609 | 1_2:+15469096 | None:intergenic |
| CTAAGGTTAAAATTAGAACA+TGG | 0.649969 | 1_2:-15468211 | Msa0058820:CDS |
| TGCAGCACAAGAAAATCGCA+AGG | 0.650310 | 1_2:-15468296 | Msa0058820:CDS |
| AATATTGGATCGCATATGTG+GGG | 0.650471 | 1_2:-15469401 | Msa0058820:CDS |
| AGAGCACGACAAAAGAAAGG+GGG | 0.662182 | 1_2:-15468963 | Msa0058820:CDS |
| TTTGTAGAATCATCTACATG+CGG | 0.667656 | 1_2:+15469624 | None:intergenic |
| CATTTGTCATGACGTGACGG+CGG | 0.670962 | 1_2:+15468990 | None:intergenic |
| AAAGGAACATTTGTACCACA+AGG | 0.673901 | 1_2:-15468685 | Msa0058820:CDS |
| ATGGTATACCTTCATCCAAG+AGG | 0.683941 | 1_2:+15467291 | None:intergenic |
| CCACATACATTATCTCGTGG+AGG | 0.684741 | 1_2:-15469095 | Msa0058820:CDS |
| TTGCATCAACTGATGCGCTG+TGG | 0.684847 | 1_2:+15468438 | None:intergenic |
| ATATTGGATCGCATATGTGG+GGG | 0.690258 | 1_2:-15469400 | Msa0058820:CDS |
| ACGTAAAGATATCTTAACAG+AGG | 0.699129 | 1_2:-15468662 | Msa0058820:CDS |
| ACATTTCAAGTGGAGGACGG+CGG | 0.718433 | 1_2:+15469316 | None:intergenic |
| TAGCACCTCTTCCAACACCA+CGG | 0.719203 | 1_2:+15468608 | None:intergenic |
| ATTGGAACATCCGAGCATGG+TGG | 0.721014 | 1_2:-15468637 | Msa0058820:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTAAAACTCAATTTTATT+GGG | + | chr1_2:15468704-15468723 | None:intergenic | 10.0% |
| !! | TAAAAATTAAATTCATTTGT+AGG | - | chr1_2:15469253-15469272 | Msa0058820:CDS | 10.0% |
| !! | AAATAAGTAAAATAACAATA+AGG | + | chr1_2:15469428-15469447 | None:intergenic | 10.0% |
| !! | TGAAAAAAATTAACAAAGTT+CGG | - | chr1_2:15466869-15466888 | Msa0058820:three_prime_UTR | 15.0% |
| !!! | TTATTTTATCTATTGAACTT+AGG | - | chr1_2:15467133-15467152 | Msa0058820:CDS | 15.0% |
| !! | ACATAATCATAAAAAAAAGT+TGG | + | chr1_2:15467167-15467186 | None:intergenic | 15.0% |
| !!! | TTTTCTTCAAAAAGATATAT+GGG | - | chr1_2:15467359-15467378 | Msa0058820:CDS | 15.0% |
| !! | TAAACAATTAAATTAGTACA+AGG | + | chr1_2:15467452-15467471 | None:intergenic | 15.0% |
| !!! | AATAAGTCTTTAACATATTT+TGG | + | chr1_2:15468491-15468510 | None:intergenic | 15.0% |
| !! | AAAATATGTTAAAGACTTAT+TGG | - | chr1_2:15468490-15468509 | Msa0058820:CDS | 15.0% |
| !!! | TATTGATTTCAAATTTATTC+AGG | - | chr1_2:15468622-15468641 | Msa0058820:CDS | 15.0% |
| !!! | GATTTAAAACTCAATTTTAT+TGG | + | chr1_2:15468705-15468724 | None:intergenic | 15.0% |
| !!! | TCTTAATTTGGAAATATATA+TGG | + | chr1_2:15469392-15469411 | None:intergenic | 15.0% |
| !! | TACCAAAACTAAAAAAAAAA+GGG | + | chr1_2:15469662-15469681 | None:intergenic | 15.0% |
| !! | AAAAAAAGACAGATTTAATT+TGG | - | chr1_2:15469882-15469901 | Msa0058820:CDS | 15.0% |
| !!! | GTAGTATTTTAATAGATGAT+TGG | - | chr1_2:15467001-15467020 | Msa0058820:three_prime_UTR | 20.0% |
| !!! | CATATATCTTTTTGAAGAAA+AGG | + | chr1_2:15467360-15467379 | None:intergenic | 20.0% |
| !!! | CTTTTCTTCAAAAAGATATA+TGG | - | chr1_2:15467358-15467377 | Msa0058820:CDS | 20.0% |
| !! | ATAATAGGAAAAAAGTCAAA+AGG | - | chr1_2:15467501-15467520 | Msa0058820:intron | 20.0% |
| !! | TAATAGGAAAAAAGTCAAAA+GGG | - | chr1_2:15467502-15467521 | Msa0058820:intron | 20.0% |
| !!! | AAAATTCAATTAGTCTTACA+TGG | - | chr1_2:15467816-15467835 | Msa0058820:intron | 20.0% |
| !!! | AAATTCAATTAGTCTTACAT+GGG | - | chr1_2:15467817-15467836 | Msa0058820:intron | 20.0% |
| !! | CCAGAAAAAATAGATTAAAA+AGG | + | chr1_2:15467884-15467903 | None:intergenic | 20.0% |
| !!! | CCTTTTTAATCTATTTTTTC+TGG | - | chr1_2:15467881-15467900 | Msa0058820:CDS | 20.0% |
| !!! | ATTTTTTCTGGATTGTAATT+TGG | - | chr1_2:15467893-15467912 | Msa0058820:CDS | 20.0% |
| !!! | TTCAATTTGTTTGTTTGTTT+GGG | + | chr1_2:15468282-15468301 | None:intergenic | 20.0% |
| !! | ATTAAGAAATTTATGACTTC+CGG | + | chr1_2:15468464-15468483 | None:intergenic | 20.0% |
| !! | TATGAAACTTAGGATTTATT+AGG | - | chr1_2:15469551-15469570 | Msa0058820:intron | 20.0% |
| !! | GTACCAAAACTAAAAAAAAA+AGG | + | chr1_2:15469663-15469682 | None:intergenic | 20.0% |
| !!! | TTTTGTTTGATTTAGAAGTA+TGG | - | chr1_2:15469813-15469832 | Msa0058820:CDS | 20.0% |
| !!! | TAAATCTGTCTTTTTTTCTT+TGG | + | chr1_2:15469879-15469898 | None:intergenic | 20.0% |
| ! | ATCTAGTGAACCTAAAAAAA+GGG | - | chr1_2:15466828-15466847 | Msa0058820:three_prime_UTR | 25.0% |
| ! | ATTCTACAAAAGACTCAATT+TGG | - | chr1_2:15467037-15467056 | Msa0058820:three_prime_UTR | 25.0% |
| ! | TATACTAACCTTAAATTCAG+GGG | + | chr1_2:15467409-15467428 | None:intergenic | 25.0% |
| ! | GTATACTAACCTTAAATTCA+GGG | + | chr1_2:15467410-15467429 | None:intergenic | 25.0% |
| ! | GAAAAGATTGTGTACTAAAA+GGG | + | chr1_2:15467862-15467881 | None:intergenic | 25.0% |
| ! | TTGGTTGAAAAAACTGAAAA+AGG | - | chr1_2:15467945-15467964 | Msa0058820:CDS | 25.0% |
| ! | GTTGATGCAAAAATCATTTA+TGG | - | chr1_2:15468223-15468242 | Msa0058820:CDS | 25.0% |
| !! | GTTCAATTTGTTTGTTTGTT+TGG | + | chr1_2:15468283-15468302 | None:intergenic | 25.0% |
| ! | CTAAGGTTAAAATTAGAACA+TGG | - | chr1_2:15468437-15468456 | Msa0058820:CDS | 25.0% |
| ! | TATGTTAAAGACTTATTGGT+TGG | - | chr1_2:15468494-15468513 | Msa0058820:CDS | 25.0% |
| ! | ACTATTCTATTCTACAAGTT+TGG | - | chr1_2:15468531-15468550 | Msa0058820:CDS | 25.0% |
| ! | ACAAACAAATCAAATGTGTT+TGG | - | chr1_2:15468669-15468688 | Msa0058820:CDS | 25.0% |
| !! | ATCAAATGTGTTTGGATTTT+TGG | - | chr1_2:15468677-15468696 | Msa0058820:CDS | 25.0% |
| ! | TATACTTACTCCATAAGAAA+CGG | + | chr1_2:15468810-15468829 | None:intergenic | 25.0% |
| ! | AGCAAACGGTAATAAAAAAA+AGG | - | chr1_2:15469118-15469137 | Msa0058820:CDS | 25.0% |
| ! | GTAATAAAAAAAAGGTTCGT+TGG | - | chr1_2:15469126-15469145 | Msa0058820:CDS | 25.0% |
| ! | ATTAAATTCATTTGTAGGCA+AGG | - | chr1_2:15469258-15469277 | Msa0058820:CDS | 25.0% |
| ! | ATATATATGGTGCAAACATA+TGG | + | chr1_2:15469379-15469398 | None:intergenic | 25.0% |
| ! | TATGTCTAGCTATCTTAATT+TGG | + | chr1_2:15469404-15469423 | None:intergenic | 25.0% |
| ! | TAATCTATTGTACAAACTGT+AGG | - | chr1_2:15469448-15469467 | Msa0058820:CDS | 25.0% |
| ! | TCTTGAATTGTATGAAACTT+AGG | - | chr1_2:15469541-15469560 | Msa0058820:intron | 25.0% |
| ! | CAATGTTTAATTAGTACTGT+TGG | - | chr1_2:15469587-15469606 | Msa0058820:intron | 25.0% |
| !!! | GACCCTTTTTTTTTTAGTTT+TGG | - | chr1_2:15469657-15469676 | Msa0058820:CDS | 25.0% |
| !! | TTGACATATAGACATTTTGA+AGG | - | chr1_2:15469790-15469809 | Msa0058820:CDS | 25.0% |
| CATCTAGTGAACCTAAAAAA+AGG | - | chr1_2:15466827-15466846 | Msa0058820:three_prime_UTR | 30.0% | |
| ! | ATTTTCACCATAACATTTCC+CGG | + | chr1_2:15466935-15466954 | None:intergenic | 30.0% |
| TTTGTAGAATCATCTACATG+CGG | + | chr1_2:15467027-15467046 | None:intergenic | 30.0% | |
| ! | CTCAATTTGGAATGATCTTA+AGG | - | chr1_2:15467050-15467069 | Msa0058820:three_prime_UTR | 30.0% |
| TGATAATCCAGATCCAAAAA+AGG | - | chr1_2:15467212-15467231 | Msa0058820:intron | 30.0% | |
| !!! | TTTCTCAAAGGATCCTTTTT+TGG | + | chr1_2:15467228-15467247 | None:intergenic | 30.0% |
| ! | AGGATCCTTTGAGAAAATAT+TGG | - | chr1_2:15467232-15467251 | Msa0058820:intron | 30.0% |
| AAAATATTGGATCGCATATG+TGG | - | chr1_2:15467245-15467264 | Msa0058820:intron | 30.0% | |
| AAATATTGGATCGCATATGT+GGG | - | chr1_2:15467246-15467265 | Msa0058820:intron | 30.0% | |
| AGAAAAGGATACATTTCAAG+TGG | + | chr1_2:15467345-15467364 | None:intergenic | 30.0% | |
| CGTATACTAACCTTAAATTC+AGG | + | chr1_2:15467411-15467430 | None:intergenic | 30.0% | |
| ! | GAATTTAAGGTTAGTATACG+TGG | - | chr1_2:15467411-15467430 | Msa0058820:intron | 30.0% |
| ! | TTTGCTTGAAGGTATAATGA+TGG | - | chr1_2:15467582-15467601 | Msa0058820:intron | 30.0% |
| GGATGAAAAGAGAAAAAGAA+TGG | - | chr1_2:15467603-15467622 | Msa0058820:intron | 30.0% | |
| GGAAAAGATTGTGTACTAAA+AGG | + | chr1_2:15467863-15467882 | None:intergenic | 30.0% | |
| ! | TATGTGTGTTTTGCAAATGT+AGG | - | chr1_2:15467917-15467936 | Msa0058820:CDS | 30.0% |
| ACGTAAAGATATCTTAACAG+AGG | - | chr1_2:15467986-15468005 | Msa0058820:CDS | 30.0% | |
| GCTACAATAAGCAATTACTT+TGG | - | chr1_2:15468059-15468078 | Msa0058820:intron | 30.0% | |
| CAATAAGCAATTACTTTGGA+AGG | - | chr1_2:15468063-15468082 | Msa0058820:intron | 30.0% | |
| ACTTGCAGCAAAAATTAAAG+CGG | - | chr1_2:15468157-15468176 | Msa0058820:CDS | 30.0% | |
| ! | AATTTGTTTGTTTGTTTGGG+AGG | + | chr1_2:15468279-15468298 | None:intergenic | 30.0% |
| !!! | ACAACAACTTTTTCAGAACA+GGG | + | chr1_2:15468305-15468324 | None:intergenic | 30.0% |
| TCTGAAAAAGTTGTTGTGTT+AGG | - | chr1_2:15468308-15468327 | Msa0058820:CDS | 30.0% | |
| !! | TATGCATGATTTTGAAAGAG+AGG | - | chr1_2:15468408-15468427 | Msa0058820:CDS | 30.0% |
| GTTAAAATTAGAACATGGTC+CGG | - | chr1_2:15468442-15468461 | Msa0058820:CDS | 30.0% | |
| TGTTTGTTTCAATACAGAGA+CGG | + | chr1_2:15468656-15468675 | None:intergenic | 30.0% | |
| ! | TATGAACAAAGTGTGTTACT+TGG | - | chr1_2:15468782-15468801 | Msa0058820:intron | 30.0% |
| ATTAATCGTCATTTGTCCAA+AGG | - | chr1_2:15468913-15468932 | Msa0058820:intron | 30.0% | |
| TTGTCCAAAGGATAATACAT+TGG | - | chr1_2:15468925-15468944 | Msa0058820:CDS | 30.0% | |
| ACAACCAATGTATTATCCTT+TGG | + | chr1_2:15468932-15468951 | None:intergenic | 30.0% | |
| ! | GTTCTATCTTTTAGTGTGAT+AGG | + | chr1_2:15469051-15469070 | None:intergenic | 30.0% |
| !!! | ATTTTTTTAACCTAGTGCTC+TGG | - | chr1_2:15469082-15469101 | Msa0058820:CDS | 30.0% |
| GAAACTTAGGATTTATTAGG+AGG | - | chr1_2:15469554-15469573 | Msa0058820:intron | 30.0% | |
| !! | GTTTGTTGTTATTTCTAGCT+GGG | - | chr1_2:15469609-15469628 | Msa0058820:CDS | 30.0% |
| !!! | TTTTTTAGTTTTGGTACTGC+TGG | - | chr1_2:15469666-15469685 | Msa0058820:CDS | 30.0% |
| !!! | TTTTTAGTTTTGGTACTGCT+GGG | - | chr1_2:15469667-15469686 | Msa0058820:CDS | 30.0% |
| !!! | TCTGTCTTTTTTTCTTTGGA+TGG | + | chr1_2:15469875-15469894 | None:intergenic | 30.0% |
| !! | ATTTAATTTGGTACTGTACC+AGG | - | chr1_2:15469894-15469913 | Msa0058820:CDS | 30.0% |
| ! | TGCGTTTTTCTTGTGTAAAC+AGG | - | chr1_2:15466773-15466792 | Msa0058820:three_prime_UTR | 35.0% |
| TAGGTTCACTAGATGAAGAA+GGG | + | chr1_2:15466822-15466841 | None:intergenic | 35.0% | |
| TTAGGTTCACTAGATGAAGA+AGG | + | chr1_2:15466823-15466842 | None:intergenic | 35.0% | |
| GAACCTAAAAAAAGGGTTAG+AGG | - | chr1_2:15466835-15466854 | Msa0058820:three_prime_UTR | 35.0% | |
| !!! | CAACCTCTAACCCTTTTTTT+AGG | + | chr1_2:15466841-15466860 | None:intergenic | 35.0% |
| ATTAACAAAGTTCGGACAAC+AGG | - | chr1_2:15466877-15466896 | Msa0058820:three_prime_UTR | 35.0% | |
| GACAACAGGTGTGAAAATAA+AGG | - | chr1_2:15466891-15466910 | Msa0058820:three_prime_UTR | 35.0% | |
| GTTCAGTTCGATTCAATAAC+CGG | - | chr1_2:15466913-15466932 | Msa0058820:three_prime_UTR | 35.0% | |
| TTCAGTTCGATTCAATAACC+GGG | - | chr1_2:15466914-15466933 | Msa0058820:three_prime_UTR | 35.0% | |
| TCAATAACCGGGAAATGTTA+TGG | - | chr1_2:15466925-15466944 | Msa0058820:three_prime_UTR | 35.0% | |
| !!! | AAAGGATCCTTTTTTGGATC+TGG | + | chr1_2:15467222-15467241 | None:intergenic | 35.0% |
| ! | GCGATCCAATATTTTCTCAA+AGG | + | chr1_2:15467240-15467259 | None:intergenic | 35.0% |
| AATATTGGATCGCATATGTG+GGG | - | chr1_2:15467247-15467266 | Msa0058820:intron | 35.0% | |
| ! | AAAGGATACATTTCAAGTGG+AGG | + | chr1_2:15467342-15467361 | None:intergenic | 35.0% |
| AGATATATGGGAGCAGTTTA+TGG | - | chr1_2:15467371-15467390 | Msa0058820:CDS | 35.0% | |
| AGGAAAAAAGTCAAAAGGGT+AGG | - | chr1_2:15467506-15467525 | Msa0058820:intron | 35.0% | |
| GGAAAAAAGTCAAAAGGGTA+GGG | - | chr1_2:15467507-15467526 | Msa0058820:intron | 35.0% | |
| GAGATAATGTATGTGGGTAA+AGG | + | chr1_2:15467549-15467568 | None:intergenic | 35.0% | |
| AGAAAAAGAATGGAAGACTC+TGG | - | chr1_2:15467613-15467632 | Msa0058820:intron | 35.0% | |
| AAAGGAACATTTGTACCACA+AGG | - | chr1_2:15467963-15467982 | Msa0058820:CDS | 35.0% | |
| AAGATATCTTTACGTCCTTG+TGG | + | chr1_2:15467981-15468000 | None:intergenic | 35.0% | |
| GATATCTTAACAGAGGCTAT+TGG | - | chr1_2:15467993-15468012 | Msa0058820:CDS | 35.0% | |
| ! | AATTACTTTGGAAGGTCTTC+AGG | - | chr1_2:15468071-15468090 | Msa0058820:intron | 35.0% |
| TGACATTTATGCTTTGCGTT+GGG | + | chr1_2:15468097-15468116 | None:intergenic | 35.0% | |
| ! | TTTGTTTGTTTGGGAGGTAT+CGG | + | chr1_2:15468273-15468292 | None:intergenic | 35.0% |
| !!! | CACAACAACTTTTTCAGAAC+AGG | + | chr1_2:15468306-15468325 | None:intergenic | 35.0% |
| TGAAAGAGAGGCAATATCTA+AGG | - | chr1_2:15468420-15468439 | Msa0058820:CDS | 35.0% | |
| ! | GTTAAAGACTTATTGGTTGG+CGG | - | chr1_2:15468497-15468516 | Msa0058820:CDS | 35.0% |
| ! | TTAAAGACTTATTGGTTGGC+GGG | - | chr1_2:15468498-15468517 | Msa0058820:CDS | 35.0% |
| !! | AACTGGTTCTGTATTCATTG+CGG | + | chr1_2:15468733-15468752 | None:intergenic | 35.0% |
| GTTCGTATGTAGGATTTAAC+TGG | + | chr1_2:15468750-15468769 | None:intergenic | 35.0% | |
| TTTACGTGTATAGAGCACAT+TGG | - | chr1_2:15468888-15468907 | Msa0058820:intron | 35.0% | |
| GATCTTGGTTAAGTGAACAA+AGG | + | chr1_2:15468955-15468974 | None:intergenic | 35.0% | |
| TCATTGTTGTGTCAAGATCT+TGG | + | chr1_2:15468970-15468989 | None:intergenic | 35.0% | |
| AGATCTTGACACAACAATGA+AGG | - | chr1_2:15468970-15468989 | Msa0058820:CDS | 35.0% | |
| GAGGTTCATCAATTAGCAAA+CGG | - | chr1_2:15469104-15469123 | Msa0058820:CDS | 35.0% | |
| ATCTTGTCTACACATACCTT+AGG | + | chr1_2:15469158-15469177 | None:intergenic | 35.0% | |
| TAAGGTATGTGTAGACAAGA+TGG | - | chr1_2:15469157-15469176 | Msa0058820:intron | 35.0% | |
| TATCCACAATCAGTTGTGTT+AGG | + | chr1_2:15469290-15469309 | None:intergenic | 35.0% | |
| CTGCTAATATTACTACCTCT+TGG | - | chr1_2:15469342-15469361 | Msa0058820:CDS | 35.0% | |
| TATTACTACCTCTTGGATGA+AGG | - | chr1_2:15469349-15469368 | Msa0058820:CDS | 35.0% | |
| !! | GGTTTGTTGTTATTTCTAGC+TGG | - | chr1_2:15469608-15469627 | Msa0058820:CDS | 35.0% |
| ! | ATGAACCTTCTTGTTTGTTG+TGG | - | chr1_2:15469739-15469758 | Msa0058820:CDS | 35.0% |
| TACATCCACAACAAACAAGA+AGG | + | chr1_2:15469747-15469766 | None:intergenic | 35.0% | |
| !!! | GATGTACCCTTCTTGTTTTT+TGG | - | chr1_2:15469761-15469780 | Msa0058820:CDS | 35.0% |
| CAGCAACCAAAAAACAAGAA+GGG | + | chr1_2:15469770-15469789 | None:intergenic | 35.0% | |
| ACAGCAACCAAAAAACAAGA+AGG | + | chr1_2:15469771-15469790 | None:intergenic | 35.0% | |
| TTCTTGTGTAAACAGGCACA+TGG | - | chr1_2:15466780-15466799 | Msa0058820:three_prime_UTR | 40.0% | |
| ACTAGATGAAGAAGGGATGT+CGG | + | chr1_2:15466815-15466834 | None:intergenic | 40.0% | |
| GGATCTGGATTATCACTTTC+TGG | + | chr1_2:15467207-15467226 | None:intergenic | 40.0% | |
| ATATTGGATCGCATATGTGG+GGG | - | chr1_2:15467248-15467267 | Msa0058820:intron | 40.0% | |
| ! | GATACATTTCAAGTGGAGGA+CGG | + | chr1_2:15467338-15467357 | None:intergenic | 40.0% |
| TCGAAAGACCCCTGAATTTA+AGG | - | chr1_2:15467398-15467417 | Msa0058820:intron | 40.0% | |
| TACCCACATACATTATCTCG+TGG | - | chr1_2:15467550-15467569 | Msa0058820:CDS | 40.0% | |
| CTCCACGAGATAATGTATGT+GGG | + | chr1_2:15467555-15467574 | None:intergenic | 40.0% | |
| !! | GGAGGATATGATTTGCTTGA+AGG | - | chr1_2:15467571-15467590 | Msa0058820:intron | 40.0% |
| TTCCATTTGTCATGACGTGA+CGG | + | chr1_2:15467664-15467683 | None:intergenic | 40.0% | |
| ! | AAGAGAGCACGACAAAAGAA+AGG | - | chr1_2:15467682-15467701 | Msa0058820:CDS | 40.0% |
| ! | AGAGAGCACGACAAAAGAAA+GGG | - | chr1_2:15467683-15467702 | Msa0058820:CDS | 40.0% |
| TTTGCAAATGTAGGACTCGT+TGG | - | chr1_2:15467926-15467945 | Msa0058820:CDS | 40.0% | |
| CTGACATTTATGCTTTGCGT+TGG | + | chr1_2:15468098-15468117 | None:intergenic | 40.0% | |
| TATGGAGACACTCAAGACTA+TGG | - | chr1_2:15468241-15468260 | Msa0058820:CDS | 40.0% | |
| ATGGAGACACTCAAGACTAT+GGG | - | chr1_2:15468242-15468261 | Msa0058820:CDS | 40.0% | |
| CACTTTCTGAACATTGTCAG+TGG | + | chr1_2:15468387-15468406 | None:intergenic | 40.0% | |
| ! | TAAAGACTTATTGGTTGGCG+GGG | - | chr1_2:15468499-15468518 | Msa0058820:CDS | 40.0% |
| ACGCAACTTAGTTCGTATGT+AGG | + | chr1_2:15468760-15468779 | None:intergenic | 40.0% | |
| TTACTTGGCACCGTTTCTTA+TGG | - | chr1_2:15468797-15468816 | Msa0058820:intron | 40.0% | |
| ! | TTTTTAACCTAGTGCTCTGG+AGG | - | chr1_2:15469085-15469104 | Msa0058820:CDS | 40.0% |
| CAACCTAACACAACTGATTG+TGG | - | chr1_2:15469284-15469303 | Msa0058820:CDS | 40.0% | |
| ATGGTATACCTTCATCCAAG+AGG | + | chr1_2:15469360-15469379 | None:intergenic | 40.0% | |
| TGTATGCTTTGCGAAACGAT+TGG | - | chr1_2:15469507-15469526 | Msa0058820:intron | 40.0% | |
| GTATGCTTTGCGAAACGATT+GGG | - | chr1_2:15469508-15469527 | Msa0058820:intron | 40.0% | |
| !! | TTTCTAGCTGGGAGATATGT+TGG | - | chr1_2:15469620-15469639 | Msa0058820:CDS | 40.0% |
| CCTCCACGAGATAATGTATG+TGG | + | chr1_2:15467556-15467575 | None:intergenic | 45.0% | |
| CCACATACATTATCTCGTGG+AGG | - | chr1_2:15467553-15467572 | Msa0058820:CDS | 45.0% | |
| ! | GAGAGCACGACAAAAGAAAG+GGG | - | chr1_2:15467684-15467703 | Msa0058820:CDS | 45.0% |
| AGAGCACGACAAAAGAAAGG+GGG | - | chr1_2:15467685-15467704 | Msa0058820:CDS | 45.0% | |
| AGCAGAGTTCGAACAACAGA+TGG | - | chr1_2:15468187-15468206 | Msa0058820:CDS | 45.0% | |
| ! | GTTGTGTTAGGAAGCGCAAA+AGG | - | chr1_2:15468320-15468339 | Msa0058820:CDS | 45.0% |
| TGCAGCACAAGAAAATCGCA+AGG | - | chr1_2:15468352-15468371 | Msa0058820:CDS | 45.0% | |
| AAGAAAATCGCAAGGACGAC+TGG | - | chr1_2:15468360-15468379 | Msa0058820:CDS | 45.0% | |
| !!! | TAATGAATTTTATTTATAAT+AGG | - | chr1_2:15467486-15467505 | Msa0058820:intron | 5.0% |
| ! | ACATTTCAAGTGGAGGACGG+CGG | + | chr1_2:15467335-15467354 | None:intergenic | 50.0% |
| CATTTGTCATGACGTGACGG+CGG | + | chr1_2:15467661-15467680 | None:intergenic | 50.0% | |
| GCTATTGGAACATCCGAGCA+TGG | - | chr1_2:15468008-15468027 | Msa0058820:intron | 50.0% | |
| ATTGGAACATCCGAGCATGG+TGG | - | chr1_2:15468011-15468030 | Msa0058820:intron | 50.0% | |
| TAGCACCTCTTCCAACACCA+CGG | + | chr1_2:15468043-15468062 | None:intergenic | 50.0% | |
| TTGCATCAACTGATGCGCTG+TGG | + | chr1_2:15468213-15468232 | None:intergenic | 50.0% | |
| ! | TGATGAACCTCCAGAGCACT+AGG | + | chr1_2:15469095-15469114 | None:intergenic | 50.0% |
| CGCCGTCACGTCATGACAAA+TGG | - | chr1_2:15467659-15467678 | Msa0058820:intron | 55.0% | |
| ! | ACTTATTGGTTGGCGGGGCT+TGG | - | chr1_2:15468504-15468523 | Msa0058820:CDS | 55.0% |
| !! | GGTTCGTTGGCTTCGTCCTA+AGG | - | chr1_2:15469139-15469158 | Msa0058820:CDS | 55.0% |
| GGATCGCATATGTGGGGGAG+CGG | - | chr1_2:15467253-15467272 | Msa0058820:intron | 60.0% | |
| AAGTGGAGGACGGCGGTCTT+TGG | + | chr1_2:15467328-15467347 | None:intergenic | 60.0% | |
| TCATGACGTGACGGCGGAGA+TGG | + | chr1_2:15467655-15467674 | None:intergenic | 60.0% | |
| ACGGACACGACCACCATGCT+CGG | + | chr1_2:15468024-15468043 | None:intergenic | 60.0% | |
| ! | CGTGTCCGTGGTGTTGGAAG+AGG | - | chr1_2:15468035-15468054 | Msa0058820:intron | 60.0% |
| TCGCATATGTGGGGGAGCGG+TGG | - | chr1_2:15467256-15467275 | Msa0058820:intron | 65.0% | |
| TATGTGGGGGAGCGGTGGAG+AGG | - | chr1_2:15467261-15467280 | Msa0058820:intron | 65.0% | |
| GGAGGACGGCGGTCTTTGGA+AGG | + | chr1_2:15467324-15467343 | None:intergenic | 65.0% | |
| GAGCATGGTGGTCGTGTCCG+TGG | - | chr1_2:15468023-15468042 | Msa0058820:intron | 65.0% | |
| GGTGGTCGTGTCCGTGGTGT+TGG | - | chr1_2:15468029-15468048 | Msa0058820:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 15466742 | 15469928 | 15466742 | ID=Msa0058820;Name=Msa0058820 |
| chr1_2 | mRNA | 15466742 | 15469928 | 15466742 | ID=Msa0058820-mRNA-1;Parent=Msa0058820;Name=Msa0058820-mRNA-1;_AED=0.22;_eAED=0.22;_QI=0|1|0.88|1|1|1|9|366|652 |
| chr1_2 | exon | 15466742 | 15467200 | 15466742 | ID=Msa0058820-mRNA-1:exon:6244;Parent=Msa0058820-mRNA-1 |
| chr1_2 | exon | 15467300 | 15467395 | 15467300 | ID=Msa0058820-mRNA-1:exon:6243;Parent=Msa0058820-mRNA-1 |
| chr1_2 | exon | 15467510 | 15467573 | 15467510 | ID=Msa0058820-mRNA-1:exon:6242;Parent=Msa0058820-mRNA-1 |
| chr1_2 | exon | 15467665 | 15467769 | 15467665 | ID=Msa0058820-mRNA-1:exon:6241;Parent=Msa0058820-mRNA-1 |
| chr1_2 | exon | 15467850 | 15468026 | 15467850 | ID=Msa0058820-mRNA-1:exon:6240;Parent=Msa0058820-mRNA-1 |
| chr1_2 | exon | 15468112 | 15468731 | 15468112 | ID=Msa0058820-mRNA-1:exon:6239;Parent=Msa0058820-mRNA-1 |
| chr1_2 | exon | 15468920 | 15469162 | 15468920 | ID=Msa0058820-mRNA-1:exon:6238;Parent=Msa0058820-mRNA-1 |
| chr1_2 | exon | 15469251 | 15469481 | 15469251 | ID=Msa0058820-mRNA-1:exon:6237;Parent=Msa0058820-mRNA-1 |
| chr1_2 | exon | 15469599 | 15469928 | 15469599 | ID=Msa0058820-mRNA-1:exon:6236;Parent=Msa0058820-mRNA-1 |
| chr1_2 | CDS | 15469599 | 15469928 | 15469599 | ID=Msa0058820-mRNA-1:cds;Parent=Msa0058820-mRNA-1 |
| chr1_2 | CDS | 15469251 | 15469481 | 15469251 | ID=Msa0058820-mRNA-1:cds;Parent=Msa0058820-mRNA-1 |
| chr1_2 | CDS | 15468920 | 15469162 | 15468920 | ID=Msa0058820-mRNA-1:cds;Parent=Msa0058820-mRNA-1 |
| chr1_2 | CDS | 15468112 | 15468731 | 15468112 | ID=Msa0058820-mRNA-1:cds;Parent=Msa0058820-mRNA-1 |
| chr1_2 | CDS | 15467850 | 15468026 | 15467850 | ID=Msa0058820-mRNA-1:cds;Parent=Msa0058820-mRNA-1 |
| chr1_2 | CDS | 15467665 | 15467769 | 15467665 | ID=Msa0058820-mRNA-1:cds;Parent=Msa0058820-mRNA-1 |
| chr1_2 | CDS | 15467510 | 15467573 | 15467510 | ID=Msa0058820-mRNA-1:cds;Parent=Msa0058820-mRNA-1 |
| chr1_2 | CDS | 15467300 | 15467395 | 15467300 | ID=Msa0058820-mRNA-1:cds;Parent=Msa0058820-mRNA-1 |
| chr1_2 | CDS | 15467108 | 15467200 | 15467108 | ID=Msa0058820-mRNA-1:cds;Parent=Msa0058820-mRNA-1 |
| chr1_2 | three_prime_UTR | 15466742 | 15467107 | 15466742 | ID=Msa0058820-mRNA-1:three_prime_utr;Parent=Msa0058820-mRNA-1 |
| Gene Sequence |
| Protein sequence |
