Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0814110 | sp|B0ZB57|OMT3_HUMLU | 59.155 | 355 | 139 | 2 | 10 | 358 | 23 | 377 | 6.89e-153 | 437 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0814110 | A0A649WZ66 | 98.324 | 358 | 6 | 0 | 1 | 358 | 1 | 358 | 0.0 | 727 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0814110 | Msa0854730 | 0.825303 | 5.044015e-54 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0814110 | MtrunA17_Chr5g0432211 | 84.680 | 359 | 40 | 2 | 1 | 358 | 1 | 345 | 0.0 | 610 |
Msa0814110 | MtrunA17_Chr5g0432301 | 82.451 | 359 | 61 | 2 | 1 | 357 | 1 | 359 | 0.0 | 604 |
Msa0814110 | MtrunA17_Chr5g0432251 | 81.616 | 359 | 65 | 1 | 1 | 358 | 1 | 359 | 0.0 | 602 |
Msa0814110 | MtrunA17_Chr5g0432241 | 80.278 | 360 | 69 | 2 | 1 | 358 | 1 | 360 | 0.0 | 589 |
Msa0814110 | MtrunA17_Chr5g0432261 | 69.429 | 350 | 78 | 3 | 10 | 358 | 6 | 327 | 4.76e-177 | 494 |
Msa0814110 | MtrunA17_Chr4g0040621 | 61.667 | 360 | 131 | 5 | 1 | 358 | 15 | 369 | 5.05e-157 | 445 |
Msa0814110 | MtrunA17_Chr4g0046361 | 50.142 | 353 | 169 | 6 | 11 | 358 | 11 | 361 | 8.59e-118 | 345 |
Msa0814110 | MtrunA17_Chr4g0014681 | 50.959 | 365 | 170 | 6 | 1 | 358 | 1 | 363 | 2.03e-117 | 344 |
Msa0814110 | MtrunA17_Chr4g0014561 | 50.411 | 365 | 172 | 6 | 1 | 358 | 1 | 363 | 1.33e-115 | 340 |
Msa0814110 | MtrunA17_Chr4g0046341 | 50.562 | 356 | 166 | 6 | 11 | 358 | 11 | 364 | 2.25e-110 | 326 |
Msa0814110 | MtrunA17_Chr4g0014641 | 49.296 | 355 | 171 | 6 | 11 | 358 | 11 | 363 | 9.66e-110 | 325 |
Msa0814110 | MtrunA17_Chr7g0219141 | 43.646 | 362 | 195 | 6 | 1 | 358 | 1 | 357 | 1.51e-105 | 314 |
Msa0814110 | MtrunA17_Chr4g0014661 | 48.433 | 351 | 174 | 4 | 11 | 358 | 11 | 357 | 1.39e-102 | 306 |
Msa0814110 | MtrunA17_Chr7g0223241 | 44.253 | 348 | 185 | 5 | 10 | 356 | 9 | 348 | 1.43e-101 | 303 |
Msa0814110 | MtrunA17_Chr7g0223231 | 43.391 | 348 | 188 | 5 | 10 | 356 | 9 | 348 | 3.37e-101 | 302 |
Msa0814110 | MtrunA17_Chr7g0219161 | 44.000 | 350 | 187 | 6 | 1 | 346 | 1 | 345 | 6.71e-101 | 302 |
Msa0814110 | MtrunA17_Chr1g0188391 | 43.956 | 364 | 195 | 7 | 1 | 358 | 1 | 361 | 6.36e-100 | 300 |
Msa0814110 | MtrunA17_Chr4g0046531 | 45.714 | 350 | 184 | 5 | 11 | 358 | 373 | 718 | 5.48e-99 | 308 |
Msa0814110 | MtrunA17_Chr4g0046531 | 45.845 | 349 | 183 | 5 | 11 | 357 | 11 | 355 | 1.84e-97 | 304 |
Msa0814110 | MtrunA17_Chr4g0014591 | 47.863 | 351 | 176 | 4 | 11 | 358 | 11 | 357 | 1.03e-98 | 296 |
Msa0814110 | MtrunA17_Chr1g0188371 | 42.342 | 333 | 186 | 5 | 10 | 338 | 10 | 340 | 2.08e-84 | 260 |
Msa0814110 | MtrunA17_Chr3g0121301 | 38.095 | 336 | 202 | 4 | 20 | 354 | 27 | 357 | 1.52e-73 | 232 |
Msa0814110 | MtrunA17_Chr4g0014601 | 45.276 | 254 | 132 | 4 | 11 | 261 | 11 | 260 | 1.65e-73 | 229 |
Msa0814110 | MtrunA17_Chr4g0021981 | 37.822 | 349 | 208 | 7 | 14 | 358 | 25 | 368 | 1.89e-70 | 224 |
Msa0814110 | MtrunA17_Chr4g0022021 | 36.963 | 349 | 211 | 6 | 14 | 358 | 25 | 368 | 6.21e-65 | 210 |
Msa0814110 | MtrunA17_Chr1g0200491 | 30.117 | 342 | 225 | 9 | 26 | 357 | 34 | 371 | 3.84e-46 | 161 |
Msa0814110 | MtrunA17_Chr7g0276411 | 32.000 | 325 | 203 | 10 | 30 | 343 | 30 | 347 | 2.45e-44 | 156 |
Msa0814110 | MtrunA17_Chr7g0218261 | 30.154 | 325 | 217 | 7 | 26 | 344 | 33 | 353 | 1.30e-42 | 152 |
Msa0814110 | MtrunA17_Chr8g0367441 | 33.019 | 318 | 199 | 8 | 31 | 339 | 46 | 358 | 1.61e-42 | 152 |
Msa0814110 | MtrunA17_Chr7g0276401 | 32.602 | 319 | 204 | 8 | 31 | 343 | 47 | 360 | 3.42e-42 | 150 |
Msa0814110 | MtrunA17_Chr3g0128011 | 30.864 | 324 | 206 | 11 | 31 | 344 | 88 | 403 | 1.36e-41 | 150 |
Msa0814110 | MtrunA17_Chr7g0219171 | 54.478 | 134 | 58 | 3 | 226 | 358 | 117 | 248 | 2.85e-41 | 145 |
Msa0814110 | MtrunA17_Chr7g0219171 | 45.000 | 120 | 62 | 2 | 1 | 120 | 1 | 116 | 5.49e-22 | 93.6 |
Msa0814110 | MtrunA17_Chr1g0163611 | 39.000 | 200 | 118 | 3 | 146 | 345 | 160 | 355 | 8.84e-41 | 147 |
Msa0814110 | MtrunA17_Chr2g0307521 | 35.648 | 216 | 129 | 4 | 131 | 343 | 139 | 347 | 9.60e-41 | 147 |
Msa0814110 | MtrunA17_Chr8g0367451 | 30.599 | 317 | 208 | 7 | 31 | 339 | 45 | 357 | 2.45e-40 | 146 |
Msa0814110 | MtrunA17_Chr8g0367491 | 30.581 | 327 | 211 | 7 | 29 | 343 | 39 | 361 | 2.45e-40 | 146 |
Msa0814110 | MtrunA17_Chr1g0163601 | 39.048 | 210 | 124 | 3 | 136 | 345 | 150 | 355 | 3.76e-40 | 145 |
Msa0814110 | MtrunA17_Chr7g0218181 | 33.484 | 221 | 143 | 3 | 125 | 345 | 137 | 353 | 4.40e-40 | 145 |
Msa0814110 | MtrunA17_Chr7g0218271 | 32.579 | 221 | 145 | 3 | 125 | 345 | 145 | 361 | 5.12e-40 | 145 |
Msa0814110 | MtrunA17_Chr8g0367501 | 29.730 | 333 | 222 | 7 | 19 | 343 | 20 | 348 | 6.53e-40 | 145 |
Msa0814110 | MtrunA17_Chr8g0345851 | 33.574 | 277 | 168 | 8 | 86 | 357 | 24 | 289 | 8.68e-40 | 142 |
Msa0814110 | MtrunA17_Chr7g0218131 | 28.440 | 327 | 223 | 7 | 26 | 345 | 34 | 356 | 9.38e-40 | 144 |
Msa0814110 | MtrunA17_Chr7g0218301 | 33.636 | 220 | 142 | 3 | 125 | 344 | 145 | 360 | 4.82e-39 | 142 |
Msa0814110 | MtrunA17_Chr5g0448091 | 30.982 | 326 | 206 | 10 | 31 | 345 | 33 | 350 | 8.87e-39 | 141 |
Msa0814110 | MtrunA17_Chr1g0163621 | 39.000 | 200 | 118 | 3 | 146 | 345 | 174 | 369 | 2.23e-38 | 140 |
Msa0814110 | MtrunA17_Chr7g0218211 | 28.354 | 328 | 220 | 8 | 26 | 344 | 33 | 354 | 7.88e-38 | 139 |
Msa0814110 | MtrunA17_Chr3g0085211 | 29.448 | 326 | 205 | 7 | 33 | 345 | 43 | 356 | 8.64e-38 | 139 |
Msa0814110 | MtrunA17_Chr3g0085201 | 29.107 | 347 | 225 | 10 | 7 | 344 | 8 | 342 | 1.32e-36 | 135 |
Msa0814110 | MtrunA17_Chr8g0367381 | 39.227 | 181 | 105 | 4 | 146 | 325 | 149 | 325 | 6.34e-34 | 127 |
Msa0814110 | MtrunA17_Chr2g0314271 | 30.625 | 320 | 208 | 9 | 31 | 343 | 27 | 339 | 3.05e-33 | 126 |
Msa0814110 | MtrunA17_Chr3g0130061 | 26.437 | 348 | 239 | 10 | 7 | 343 | 2 | 343 | 3.98e-28 | 112 |
Msa0814110 | MtrunA17_Chr3g0130011 | 27.374 | 358 | 223 | 14 | 7 | 343 | 2 | 343 | 1.01e-26 | 108 |
Msa0814110 | MtrunA17_Chr6g0482291 | 35.057 | 174 | 98 | 6 | 172 | 343 | 1 | 161 | 2.19e-21 | 90.1 |
Msa0814110 | MtrunA17_Chr8g0367401 | 37.273 | 110 | 68 | 1 | 149 | 258 | 2 | 110 | 1.05e-19 | 84.3 |
Msa0814110 | MtrunA17_Chr4g0014611 | 56.566 | 99 | 43 | 0 | 260 | 358 | 9 | 107 | 1.86e-19 | 82.8 |
Msa0814110 | MtrunA17_Chr8g0367461 | 46.465 | 99 | 45 | 5 | 245 | 340 | 1 | 94 | 4.28e-19 | 82.0 |
Msa0814110 | MtrunA17_Chr4g0014671 | 55.238 | 105 | 47 | 0 | 254 | 358 | 30 | 134 | 4.56e-17 | 77.0 |
Msa0814110 | MtrunA17_Chr8g0367421 | 34.545 | 110 | 54 | 3 | 149 | 258 | 2 | 93 | 6.16e-15 | 70.9 |
Msa0814110 | MtrunA17_Chr4g0011691 | 42.708 | 96 | 51 | 4 | 260 | 354 | 140 | 232 | 7.32e-14 | 70.5 |
Msa0814110 | MtrunA17_Chr4g0011691 | 29.008 | 131 | 76 | 4 | 15 | 142 | 22 | 138 | 1.93e-12 | 66.2 |
Msa0814110 | MtrunA17_Chr8g0367391 | 39.604 | 101 | 57 | 3 | 258 | 357 | 36 | 133 | 1.97e-11 | 61.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0814110 | AT4G35160.1 | 34.916 | 358 | 213 | 9 | 15 | 357 | 28 | 380 | 2.21e-60 | 199 |
Msa0814110 | AT4G35150.1 | 33.426 | 359 | 188 | 10 | 8 | 357 | 7 | 323 | 6.41e-56 | 186 |
Msa0814110 | AT5G54160.1 | 32.288 | 319 | 206 | 7 | 31 | 344 | 34 | 347 | 8.47e-46 | 160 |
Msa0814110 | AT1G51990.2 | 31.498 | 327 | 210 | 6 | 43 | 358 | 39 | 362 | 3.92e-44 | 156 |
Msa0814110 | AT1G51990.1 | 31.498 | 327 | 210 | 6 | 43 | 358 | 39 | 362 | 5.15e-44 | 155 |
Msa0814110 | AT1G77520.1 | 30.925 | 346 | 211 | 10 | 31 | 357 | 44 | 380 | 5.81e-41 | 148 |
Msa0814110 | AT3G53140.1 | 31.288 | 326 | 203 | 10 | 31 | 343 | 27 | 344 | 1.06e-37 | 139 |
Msa0814110 | AT1G63140.2 | 33.333 | 372 | 219 | 14 | 2 | 357 | 22 | 380 | 1.89e-37 | 139 |
Msa0814110 | AT5G53810.1 | 31.105 | 344 | 214 | 10 | 31 | 357 | 40 | 377 | 2.46e-37 | 138 |
Msa0814110 | AT1G63140.4 | 33.333 | 372 | 219 | 14 | 2 | 357 | 42 | 400 | 3.45e-37 | 138 |
Msa0814110 | AT1G33030.1 | 31.269 | 323 | 206 | 11 | 31 | 344 | 21 | 336 | 4.92e-35 | 131 |
Msa0814110 | AT1G77530.1 | 30.523 | 344 | 215 | 9 | 31 | 357 | 44 | 380 | 2.86e-34 | 130 |
Msa0814110 | AT1G21130.1 | 28.788 | 330 | 209 | 9 | 31 | 344 | 40 | 359 | 4.10e-33 | 127 |
Msa0814110 | AT1G21110.1 | 28.221 | 326 | 208 | 9 | 31 | 340 | 40 | 355 | 2.44e-31 | 122 |
Msa0814110 | AT1G21120.1 | 28.182 | 330 | 211 | 9 | 31 | 344 | 40 | 359 | 3.62e-31 | 121 |
Msa0814110 | AT1G21120.2 | 28.182 | 330 | 211 | 9 | 31 | 344 | 88 | 407 | 6.91e-31 | 121 |
Msa0814110 | AT1G21100.1 | 28.182 | 330 | 211 | 9 | 31 | 344 | 40 | 359 | 8.59e-31 | 120 |
Msa0814110 | AT1G62900.1 | 39.423 | 208 | 120 | 4 | 152 | 357 | 1 | 204 | 3.41e-30 | 115 |
Msa0814110 | AT5G37170.2 | 34.171 | 199 | 126 | 4 | 161 | 357 | 38 | 233 | 5.71e-30 | 115 |
Msa0814110 | AT5G37170.1 | 34.171 | 199 | 126 | 4 | 161 | 357 | 138 | 333 | 2.17e-29 | 116 |
Msa0814110 | AT5G37170.3 | 34.043 | 188 | 119 | 4 | 172 | 357 | 1 | 185 | 6.29e-27 | 105 |
Msa0814110 | AT1G76790.1 | 25.000 | 328 | 216 | 7 | 31 | 339 | 30 | 346 | 3.09e-26 | 108 |
Msa0814110 | AT1G63140.1 | 29.889 | 271 | 166 | 11 | 2 | 258 | 42 | 302 | 7.58e-18 | 83.6 |
Msa0814110 | AT1G33030.2 | 28.936 | 235 | 157 | 7 | 31 | 258 | 21 | 252 | 1.12e-16 | 79.3 |
Msa0814110 | AT1G33030.3 | 28.936 | 235 | 157 | 7 | 31 | 258 | 21 | 252 | 1.64e-16 | 79.0 |
Msa0814110 | AT1G21130.2 | 27.500 | 240 | 157 | 7 | 31 | 258 | 40 | 274 | 9.88e-11 | 62.4 |
Find 99 sgRNAs with CRISPR-Local
Find 195 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CCATTCAGTCACACAATATT+TGG | 0.159363 | 5_3:+45932256 | Msa0814110:three_prime_UTR |
GTTAAATGAGTTGTTAAATT+TGG | 0.170908 | 5_3:-45930525 | None:intergenic |
ATAATTAAATGAATGTATTT+TGG | 0.187188 | 5_3:+45932343 | Msa0814110:three_prime_UTR |
CAGCACATGGGATGTCGTTT+TGG | 0.230646 | 5_3:+45930483 | Msa0814110:CDS |
CCATGGTTGTGTATGATATC+AGG | 0.254433 | 5_3:-45930164 | None:intergenic |
ATAGACCTTGATCCTAAAAT+TGG | 0.254900 | 5_3:-45932014 | None:intergenic |
TTTGTCTTAAGAGGATGATT+TGG | 0.260141 | 5_3:+45932223 | Msa0814110:three_prime_UTR |
ATTATATAACACTTGCTAAC+TGG | 0.321090 | 5_3:-45929958 | None:intergenic |
TGCCATGGATCTATCATATC+TGG | 0.330412 | 5_3:-45930413 | None:intergenic |
ATGCGAATCATGACTTATTC+CGG | 0.334688 | 5_3:+45930263 | Msa0814110:CDS |
TACAGTCGATATTGCATGAT+TGG | 0.335498 | 5_3:+45931748 | Msa0814110:intron |
TTGTCTTAAGAGGATGATTT+GGG | 0.336204 | 5_3:+45932224 | Msa0814110:three_prime_UTR |
AAGTAGCTAGCTAGCAAGTA+TGG | 0.339857 | 5_3:+45930022 | Msa0814110:exon |
GATCTCCCACAAGTTGTTGA+TGG | 0.346299 | 5_3:+45930710 | Msa0814110:CDS |
CTCCATTTGTGGGAATGATT+TGG | 0.349338 | 5_3:-45930675 | None:intergenic |
TTTGGACATACGCACTTAAT+CGG | 0.352771 | 5_3:+45932274 | Msa0814110:three_prime_UTR |
AGACAAGGAAAATACTTATA+TGG | 0.355177 | 5_3:-45932408 | None:intergenic |
TCAAAGCTCAAAGCCACTTA+TGG | 0.367540 | 5_3:+45930081 | Msa0814110:CDS |
TCGATCAACAAGATTTGAAC+TGG | 0.372789 | 5_3:-45929995 | None:intergenic |
CAACCAATGACTCAACTTCA+TGG | 0.372843 | 5_3:-45930613 | None:intergenic |
TCGATTAGTTTCCGATTTGT+TGG | 0.382710 | 5_3:+45930568 | Msa0814110:CDS |
ACAATGTAGAGGGATGGTTT+TGG | 0.391482 | 5_3:-45932192 | None:intergenic |
TGAAAATGTGATTCCATAAG+TGG | 0.393208 | 5_3:-45930094 | None:intergenic |
GCTTTGAGCTTTGAGCAAAT+TGG | 0.396268 | 5_3:-45930072 | None:intergenic |
GTTGATGTTGGAGGAGGTAC+GGG | 0.411565 | 5_3:+45930632 | Msa0814110:CDS |
TGCCAAATCATTCCCACAAA+TGG | 0.419064 | 5_3:+45930673 | Msa0814110:CDS |
AAGAGAGAAACGAGAAAGAA+TGG | 0.424421 | 5_3:+45931946 | Msa0814110:CDS |
AACAAAATTGCATCTGTTGG+CGG | 0.431252 | 5_3:-45930788 | None:intergenic |
ATGGATTAAGTTGATTTCCT+TGG | 0.431482 | 5_3:+45931965 | Msa0814110:CDS |
GTTCCATGAAGTTGAGTCAT+TGG | 0.432542 | 5_3:+45930610 | Msa0814110:CDS |
CAACTCATTTAACGAATCAA+TGG | 0.437712 | 5_3:+45930535 | Msa0814110:CDS |
AGCAACATTATCTCCATGTT+GGG | 0.440877 | 5_3:-45930048 | None:intergenic |
CTTAAATGTGTAGTTGACTT+AGG | 0.449531 | 5_3:+45930137 | Msa0814110:CDS |
AACACAATGCACTCCATTTG+TGG | 0.453290 | 5_3:-45930686 | None:intergenic |
GCAATATCAAAGAAAGGTAA+AGG | 0.460727 | 5_3:+45931813 | Msa0814110:CDS |
CTTATATGGTCACAATAGCT+TGG | 0.463243 | 5_3:-45932394 | None:intergenic |
GCACTTCTCAACCAACAAAT+CGG | 0.467046 | 5_3:-45930579 | None:intergenic |
TTCTTCCTCATCCACGGTAG+AGG | 0.467948 | 5_3:+45932145 | Msa0814110:three_prime_UTR |
CATGGCATCAATTCTCTGCT+TGG | 0.468036 | 5_3:+45930429 | Msa0814110:CDS |
GTTGAGTCATTGGTTGATGT+TGG | 0.468409 | 5_3:+45930620 | Msa0814110:CDS |
ATTAAGTTGATTTCCTTGGC+TGG | 0.468848 | 5_3:+45931969 | Msa0814110:CDS |
GGTTGATGTTGGAGGAGGTA+CGG | 0.474379 | 5_3:+45930631 | Msa0814110:CDS |
ATTGAAAACTTAAACTATGT+TGG | 0.478152 | 5_3:+45930743 | Msa0814110:CDS |
CCAAATATTGTGTGACTGAA+TGG | 0.482917 | 5_3:-45932256 | None:intergenic |
CAAGTTGTTGATGGTTTGCA+AGG | 0.484340 | 5_3:+45930719 | Msa0814110:CDS |
TTCAACAAAATTGCATCTGT+TGG | 0.490404 | 5_3:-45930791 | None:intergenic |
GCACTTAATCGGAAAATAAG+TGG | 0.499566 | 5_3:+45932285 | Msa0814110:three_prime_UTR |
AAAGATATTAAAGAATTGTA+AGG | 0.505831 | 5_3:+45931788 | Msa0814110:CDS |
TTATATGGTCACAATAGCTT+GGG | 0.511873 | 5_3:-45932393 | None:intergenic |
GGAATAGAGATGTAGAGAAA+CGG | 0.514416 | 5_3:-45932122 | None:intergenic |
ACACAATGCACTCCATTTGT+GGG | 0.515239 | 5_3:-45930685 | None:intergenic |
AAGCAACATTATCTCCATGT+TGG | 0.524077 | 5_3:-45930049 | None:intergenic |
TGCAAACCATCAACAACTTG+TGG | 0.526446 | 5_3:-45930716 | None:intergenic |
GAAAACTTAAACTATGTTGG+TGG | 0.526714 | 5_3:+45930746 | Msa0814110:CDS |
AACATTGTGATGATGACAAA+TGG | 0.526932 | 5_3:-45932077 | None:intergenic |
ACATGTGGTGCCACACTCAT+TGG | 0.528378 | 5_3:-45930374 | None:intergenic |
CAATATCAAAGAAAGGTAAA+GGG | 0.532814 | 5_3:+45931814 | Msa0814110:CDS |
GCAAACCATCAACAACTTGT+GGG | 0.537170 | 5_3:-45930715 | None:intergenic |
TCACTCCTCTACCGTGGATG+AGG | 0.542925 | 5_3:-45932150 | None:intergenic |
CGATCAACAAGATTTGAACT+GGG | 0.544734 | 5_3:-45929994 | None:intergenic |
AAGGATGCAATATCAAAGAA+AGG | 0.545671 | 5_3:+45931807 | Msa0814110:CDS |
TCATCCTCTTAAGACAAAAG+AGG | 0.545757 | 5_3:-45932218 | None:intergenic |
CATCCTCTTAAGACAAAAGA+GGG | 0.549685 | 5_3:-45932217 | None:intergenic |
CTTCTATGACATGTTGATGA+TGG | 0.553245 | 5_3:+45931908 | Msa0814110:CDS |
TCTACCGTGGATGAGGAAGA+AGG | 0.556802 | 5_3:-45932143 | None:intergenic |
TATTCCTTCTTCCTCATCCA+CGG | 0.561235 | 5_3:+45932139 | Msa0814110:three_prime_UTR |
CGCATCAAGCGATAGATGCA+AGG | 0.562811 | 5_3:-45930245 | None:intergenic |
ACGGTGTTAGACAAAGAGAA+TGG | 0.563271 | 5_3:+45931855 | Msa0814110:CDS |
AGGGAGACAATGTAGAGGGA+TGG | 0.564252 | 5_3:-45932198 | None:intergenic |
GAGTCATTGGTTGATGTTGG+AGG | 0.570761 | 5_3:+45930623 | Msa0814110:CDS |
AAAGAAAGGTAAAGGGAAGG+TGG | 0.580286 | 5_3:+45931821 | Msa0814110:CDS |
CCACGGTAGAGGAGTGATTG+TGG | 0.581604 | 5_3:+45932156 | Msa0814110:three_prime_UTR |
TTGATGATGGTAGTATTCGC+CGG | 0.588015 | 5_3:+45931921 | Msa0814110:CDS |
TGGAGGAGGTACGGGGACCA+TGG | 0.588947 | 5_3:+45930640 | Msa0814110:CDS |
CAAGCAGAGAATTGATGCCA+TGG | 0.591666 | 5_3:-45930428 | None:intergenic |
CTGAGTATCCCGTGCACATG+TGG | 0.594919 | 5_3:-45930389 | None:intergenic |
GTAGTCACTAAAACCAGCCA+AGG | 0.595683 | 5_3:-45931982 | None:intergenic |
TTGTTGGTTGAGAAGTGCAA+GGG | 0.598365 | 5_3:+45930584 | Msa0814110:CDS |
TTTGTTGGTTGAGAAGTGCA+AGG | 0.604264 | 5_3:+45930583 | Msa0814110:CDS |
GTCCAGATATGATAGATCCA+TGG | 0.611089 | 5_3:+45930411 | Msa0814110:CDS |
ATCAAAGAAAGGTAAAGGGA+AGG | 0.618639 | 5_3:+45931818 | Msa0814110:CDS |
TCATTGGTTGATGTTGGAGG+AGG | 0.622074 | 5_3:+45930626 | Msa0814110:CDS |
CCTGATATCATACACAACCA+TGG | 0.623862 | 5_3:+45930164 | Msa0814110:CDS |
TCTTAAGAGGATGATTTGGG+TGG | 0.624562 | 5_3:+45932227 | Msa0814110:three_prime_UTR |
AAAAGAGGGAGACAATGTAG+AGG | 0.625179 | 5_3:-45932203 | None:intergenic |
AAAGAGGGAGACAATGTAGA+GGG | 0.631933 | 5_3:-45932202 | None:intergenic |
ATCAACAAGATTTGAACTGG+GGG | 0.636051 | 5_3:-45929992 | None:intergenic |
TTGATGTTGGAGGAGGTACG+GGG | 0.638274 | 5_3:+45930633 | Msa0814110:CDS |
GCAAGTATGGAATCCCAACA+TGG | 0.639120 | 5_3:+45930035 | Msa0814110:exon |
GAAAATCACTTATTTAGACA+AGG | 0.642671 | 5_3:-45932423 | None:intergenic |
GTGTGGCACCACATGTGCAC+GGG | 0.643351 | 5_3:+45930381 | Msa0814110:CDS |
ACAGCATTTGAAACAGCACA+TGG | 0.645064 | 5_3:+45930470 | Msa0814110:CDS |
AGTGTGGCACCACATGTGCA+CGG | 0.654606 | 5_3:+45930380 | Msa0814110:CDS |
GATCAACAAGATTTGAACTG+GGG | 0.663002 | 5_3:-45929993 | None:intergenic |
TAAGAACAATCCAATGAGTG+TGG | 0.663011 | 5_3:+45930364 | Msa0814110:CDS |
CCACAATCACTCCTCTACCG+TGG | 0.683105 | 5_3:-45932156 | None:intergenic |
CAGCATTTGAAACAGCACAT+GGG | 0.692682 | 5_3:+45930471 | Msa0814110:CDS |
GAAGGTGGTTATCATTGACA+CGG | 0.700974 | 5_3:+45931836 | Msa0814110:CDS |
ATTGCATGATTGGAATGACG+AGG | 0.708926 | 5_3:+45931758 | Msa0814110:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTAATTTGATTTTTTTTTCT+TGG | + | chr5_3:45931570-45931589 | Msa0814110:intron | 10.0% |
!!! | ATAATTAAATGAATGTATTT+TGG | + | chr5_3:45932343-45932362 | Msa0814110:three_prime_UTR | 10.0% |
!! | ACAAACATATATATTCTTAA+TGG | - | chr5_3:45930916-45930935 | None:intergenic | 15.0% |
!! | ATTAAGAATATATATGTTTG+TGG | + | chr5_3:45930915-45930934 | Msa0814110:intron | 15.0% |
!! | TTAAGAATATATATGTTTGT+GGG | + | chr5_3:45930916-45930935 | Msa0814110:intron | 15.0% |
!! | TATATATATAATTGTTCTCA+TGG | - | chr5_3:45931433-45931452 | None:intergenic | 15.0% |
!! | AAAGATATTAAAGAATTGTA+AGG | + | chr5_3:45931788-45931807 | Msa0814110:CDS | 15.0% |
!! | GTTAAATGAGTTGTTAAATT+TGG | - | chr5_3:45930528-45930547 | None:intergenic | 20.0% |
!! | ATTGAAAACTTAAACTATGT+TGG | + | chr5_3:45930743-45930762 | Msa0814110:CDS | 20.0% |
!!! | GAACATTAGAGTATTTTTTA+TGG | - | chr5_3:45930878-45930897 | None:intergenic | 20.0% |
!! | AAAAAAAATGAATGATCAAG+TGG | + | chr5_3:45931104-45931123 | Msa0814110:intron | 20.0% |
!! | AAGGGAAAATATTATCTAAT+TGG | - | chr5_3:45931650-45931669 | None:intergenic | 20.0% |
!!! | ATTTTATAGATTATGGATCA+TGG | - | chr5_3:45932053-45932072 | None:intergenic | 20.0% |
!!! | TTTATGTGATTTTGTCTTAT+TGG | + | chr5_3:45932471-45932490 | Msa0814110:three_prime_UTR | 20.0% |
!! | ATTATATAACACTTGCTAAC+TGG | - | chr5_3:45929961-45929980 | None:intergenic | 25.0% |
! | ATATATGTTTGTGGGTTTAA+TGG | + | chr5_3:45930924-45930943 | Msa0814110:intron | 25.0% |
! | TTTATTATCCATAGAGATAG+AGG | + | chr5_3:45930966-45930985 | Msa0814110:intron | 25.0% |
! | TGGAAGAAATAGAGAAAAAT+GGG | + | chr5_3:45931124-45931143 | Msa0814110:intron | 25.0% |
! | TATATAATTGTTCTCATGGA+GGG | - | chr5_3:45931429-45931448 | None:intergenic | 25.0% |
! | ATATATAATTGTTCTCATGG+AGG | - | chr5_3:45931430-45931449 | None:intergenic | 25.0% |
!! | AATTTAGGCAAACATAGTTT+TGG | - | chr5_3:45931510-45931529 | None:intergenic | 25.0% |
!! | GTAAACTAATTTTTGTACCA+TGG | - | chr5_3:45931539-45931558 | None:intergenic | 25.0% |
!!! | TTTTTTTCTTGGTACAAAAG+AGG | + | chr5_3:45931581-45931600 | Msa0814110:intron | 25.0% |
!!! | TTTTTTCTTGGTACAAAAGA+GGG | + | chr5_3:45931582-45931601 | Msa0814110:intron | 25.0% |
!! | CCATATTTTTCTACTAATGA+CGG | + | chr5_3:45931624-45931643 | Msa0814110:intron | 25.0% |
! | GTGGAAAAAATAGAAAACAA+GGG | - | chr5_3:45931668-45931687 | None:intergenic | 25.0% |
! | AGTGGAAAAAATAGAAAACA+AGG | - | chr5_3:45931669-45931688 | None:intergenic | 25.0% |
! | CAATATCAAAGAAAGGTAAA+GGG | + | chr5_3:45931814-45931833 | Msa0814110:CDS | 25.0% |
!! | TACAAGATTACTCCAATTTT+AGG | + | chr5_3:45932002-45932021 | Msa0814110:CDS | 25.0% |
!! | TGGCTAGATTTTATAGATTA+TGG | - | chr5_3:45932060-45932079 | None:intergenic | 25.0% |
! | AGACAAGGAAAATACTTATA+TGG | - | chr5_3:45932411-45932430 | None:intergenic | 25.0% |
! | GAAAATCACTTATTTAGACA+AGG | - | chr5_3:45932426-45932445 | None:intergenic | 25.0% |
TGAAAATGTGATTCCATAAG+TGG | - | chr5_3:45930097-45930116 | None:intergenic | 30.0% | |
! | CTTAAATGTGTAGTTGACTT+AGG | + | chr5_3:45930137-45930156 | Msa0814110:CDS | 30.0% |
CAACTCATTTAACGAATCAA+TGG | + | chr5_3:45930535-45930554 | Msa0814110:CDS | 30.0% | |
GAAAACTTAAACTATGTTGG+TGG | + | chr5_3:45930746-45930765 | Msa0814110:CDS | 30.0% | |
TTCAACAAAATTGCATCTGT+TGG | - | chr5_3:45930794-45930813 | None:intergenic | 30.0% | |
! | AACAGATGCAATTTTGTTGA+AGG | + | chr5_3:45930793-45930812 | Msa0814110:CDS | 30.0% |
! | ATTGTTTTCCTCTATCTCTA+TGG | - | chr5_3:45930977-45930996 | None:intergenic | 30.0% |
GTGGAAGAAATAGAGAAAAA+TGG | + | chr5_3:45931123-45931142 | Msa0814110:intron | 30.0% | |
AAGAAATAGAGAAAAATGGG+AGG | + | chr5_3:45931127-45931146 | Msa0814110:intron | 30.0% | |
AGAAATAGAGAAAAATGGGA+GGG | + | chr5_3:45931128-45931147 | Msa0814110:intron | 30.0% | |
AGGGAACTAAGAAATTGTAT+TGG | + | chr5_3:45931203-45931222 | Msa0814110:intron | 30.0% | |
GAACTAAGAAATTGTATTGG+AGG | + | chr5_3:45931206-45931225 | Msa0814110:intron | 30.0% | |
TAAGAAATTGTATTGGAGGA+GGG | + | chr5_3:45931210-45931229 | Msa0814110:intron | 30.0% | |
ATATAATTGTTCTCATGGAG+GGG | - | chr5_3:45931428-45931447 | None:intergenic | 30.0% | |
! | TTTTTCTTGGTACAAAAGAG+GGG | + | chr5_3:45931583-45931602 | Msa0814110:intron | 30.0% |
CCGTCATTAGTAGAAAAATA+TGG | - | chr5_3:45931627-45931646 | None:intergenic | 30.0% | |
GAAAAGAGAACAAACTAAAG+TGG | - | chr5_3:45931687-45931706 | None:intergenic | 30.0% | |
! | TATGTTTGAGTTACGAAAGA+AGG | - | chr5_3:45931715-45931734 | None:intergenic | 30.0% |
AAGGATGCAATATCAAAGAA+AGG | + | chr5_3:45931807-45931826 | Msa0814110:CDS | 30.0% | |
GCAATATCAAAGAAAGGTAA+AGG | + | chr5_3:45931813-45931832 | Msa0814110:CDS | 30.0% | |
!! | ATGGATTAAGTTGATTTCCT+TGG | + | chr5_3:45931965-45931984 | Msa0814110:CDS | 30.0% |
!!! | TTACTCCAATTTTAGGATCA+AGG | + | chr5_3:45932009-45932028 | Msa0814110:CDS | 30.0% |
ATAGACCTTGATCCTAAAAT+TGG | - | chr5_3:45932017-45932036 | None:intergenic | 30.0% | |
! | AACATTGTGATGATGACAAA+TGG | - | chr5_3:45932080-45932099 | None:intergenic | 30.0% |
TTTGTCTTAAGAGGATGATT+TGG | + | chr5_3:45932223-45932242 | Msa0814110:three_prime_UTR | 30.0% | |
TTGTCTTAAGAGGATGATTT+GGG | + | chr5_3:45932224-45932243 | Msa0814110:three_prime_UTR | 30.0% | |
TTATATGGTCACAATAGCTT+GGG | - | chr5_3:45932396-45932415 | None:intergenic | 30.0% | |
ATCAACAAGATTTGAACTGG+GGG | - | chr5_3:45929995-45930014 | None:intergenic | 35.0% | |
GATCAACAAGATTTGAACTG+GGG | - | chr5_3:45929996-45930015 | None:intergenic | 35.0% | |
CGATCAACAAGATTTGAACT+GGG | - | chr5_3:45929997-45930016 | None:intergenic | 35.0% | |
TCGATCAACAAGATTTGAAC+TGG | - | chr5_3:45929998-45930017 | None:intergenic | 35.0% | |
AGCAACATTATCTCCATGTT+GGG | - | chr5_3:45930051-45930070 | None:intergenic | 35.0% | |
AAGCAACATTATCTCCATGT+TGG | - | chr5_3:45930052-45930071 | None:intergenic | 35.0% | |
!!! | GAAGAAATGAGTTTTGAGAG+TGG | - | chr5_3:45930200-45930219 | None:intergenic | 35.0% |
!!! | AGATGCAAGGCTTTTTTGAA+GGG | - | chr5_3:45930235-45930254 | None:intergenic | 35.0% |
!!! | TAGATGCAAGGCTTTTTTGA+AGG | - | chr5_3:45930236-45930255 | None:intergenic | 35.0% |
ATGCGAATCATGACTTATTC+CGG | + | chr5_3:45930263-45930282 | Msa0814110:CDS | 35.0% | |
! | ATTTTGTTGAGAGAAGAAGC+CGG | - | chr5_3:45930285-45930304 | None:intergenic | 35.0% |
TAAGAACAATCCAATGAGTG+TGG | + | chr5_3:45930364-45930383 | Msa0814110:CDS | 35.0% | |
!! | TCGATTAGTTTCCGATTTGT+TGG | + | chr5_3:45930568-45930587 | Msa0814110:CDS | 35.0% |
AACAAAATTGCATCTGTTGG+CGG | - | chr5_3:45930791-45930810 | None:intergenic | 35.0% | |
GAAATAGAGAAAAATGGGAG+GGG | + | chr5_3:45931129-45931148 | Msa0814110:intron | 35.0% | |
TTTCTTAGTTCCCTCAAATG+AGG | - | chr5_3:45931197-45931216 | None:intergenic | 35.0% | |
CTAAGAAATTGTATTGGAGG+AGG | + | chr5_3:45931209-45931228 | Msa0814110:intron | 35.0% | |
TTGCCTAAATTATGTCACCA+TGG | + | chr5_3:45931519-45931538 | Msa0814110:intron | 35.0% | |
GTACCATGGTGACATAATTT+AGG | - | chr5_3:45931525-45931544 | None:intergenic | 35.0% | |
TACAGTCGATATTGCATGAT+TGG | + | chr5_3:45931748-45931767 | Msa0814110:intron | 35.0% | |
ATCAAAGAAAGGTAAAGGGA+AGG | + | chr5_3:45931818-45931837 | Msa0814110:CDS | 35.0% | |
! | CTTCTATGACATGTTGATGA+TGG | + | chr5_3:45931908-45931927 | Msa0814110:CDS | 35.0% |
! | TTTCTCGTTTCTCTCTTTTC+CGG | - | chr5_3:45931943-45931962 | None:intergenic | 35.0% |
AAGAGAGAAACGAGAAAGAA+TGG | + | chr5_3:45931946-45931965 | Msa0814110:CDS | 35.0% | |
!! | ATTAAGTTGATTTCCTTGGC+TGG | + | chr5_3:45931969-45931988 | Msa0814110:CDS | 35.0% |
GGAATAGAGATGTAGAGAAA+CGG | - | chr5_3:45932125-45932144 | None:intergenic | 35.0% | |
CATCCTCTTAAGACAAAAGA+GGG | - | chr5_3:45932220-45932239 | None:intergenic | 35.0% | |
TCATCCTCTTAAGACAAAAG+AGG | - | chr5_3:45932221-45932240 | None:intergenic | 35.0% | |
CCAAATATTGTGTGACTGAA+TGG | - | chr5_3:45932259-45932278 | None:intergenic | 35.0% | |
CCATTCAGTCACACAATATT+TGG | + | chr5_3:45932256-45932275 | Msa0814110:three_prime_UTR | 35.0% | |
TTTGGACATACGCACTTAAT+CGG | + | chr5_3:45932274-45932293 | Msa0814110:three_prime_UTR | 35.0% | |
GCACTTAATCGGAAAATAAG+TGG | + | chr5_3:45932285-45932304 | Msa0814110:three_prime_UTR | 35.0% | |
CTTATATGGTCACAATAGCT+TGG | - | chr5_3:45932397-45932416 | None:intergenic | 35.0% | |
AAGTAGCTAGCTAGCAAGTA+TGG | + | chr5_3:45930022-45930041 | Msa0814110:exon | 40.0% | |
!! | GCTTTGAGCTTTGAGCAAAT+TGG | - | chr5_3:45930075-45930094 | None:intergenic | 40.0% |
TCAAAGCTCAAAGCCACTTA+TGG | + | chr5_3:45930081-45930100 | Msa0814110:CDS | 40.0% | |
CCATGGTTGTGTATGATATC+AGG | - | chr5_3:45930167-45930186 | None:intergenic | 40.0% | |
CCTGATATCATACACAACCA+TGG | + | chr5_3:45930164-45930183 | Msa0814110:CDS | 40.0% | |
!!! | ATGAGTTTTGAGAGTGGCAT+GGG | - | chr5_3:45930194-45930213 | None:intergenic | 40.0% |
!!! | AATGAGTTTTGAGAGTGGCA+TGG | - | chr5_3:45930195-45930214 | None:intergenic | 40.0% |
GTCCAGATATGATAGATCCA+TGG | + | chr5_3:45930411-45930430 | Msa0814110:CDS | 40.0% | |
TGCCATGGATCTATCATATC+TGG | - | chr5_3:45930416-45930435 | None:intergenic | 40.0% | |
! | ACAGCATTTGAAACAGCACA+TGG | + | chr5_3:45930470-45930489 | Msa0814110:CDS | 40.0% |
! | CAGCATTTGAAACAGCACAT+GGG | + | chr5_3:45930471-45930490 | Msa0814110:CDS | 40.0% |
GCACTTCTCAACCAACAAAT+CGG | - | chr5_3:45930582-45930601 | None:intergenic | 40.0% | |
! | TTTGTTGGTTGAGAAGTGCA+AGG | + | chr5_3:45930583-45930602 | Msa0814110:CDS | 40.0% |
! | TTGTTGGTTGAGAAGTGCAA+GGG | + | chr5_3:45930584-45930603 | Msa0814110:CDS | 40.0% |
GTTCCATGAAGTTGAGTCAT+TGG | + | chr5_3:45930610-45930629 | Msa0814110:CDS | 40.0% | |
CAACCAATGACTCAACTTCA+TGG | - | chr5_3:45930616-45930635 | None:intergenic | 40.0% | |
! | GTTGAGTCATTGGTTGATGT+TGG | + | chr5_3:45930620-45930639 | Msa0814110:CDS | 40.0% |
! | TTTGGCAAGAGTTTTTGCCA+TGG | - | chr5_3:45930660-45930679 | None:intergenic | 40.0% |
TGCCAAATCATTCCCACAAA+TGG | + | chr5_3:45930673-45930692 | Msa0814110:CDS | 40.0% | |
CTCCATTTGTGGGAATGATT+TGG | - | chr5_3:45930678-45930697 | None:intergenic | 40.0% | |
ACACAATGCACTCCATTTGT+GGG | - | chr5_3:45930688-45930707 | None:intergenic | 40.0% | |
AACACAATGCACTCCATTTG+TGG | - | chr5_3:45930689-45930708 | None:intergenic | 40.0% | |
GCAAACCATCAACAACTTGT+GGG | - | chr5_3:45930718-45930737 | None:intergenic | 40.0% | |
TGCAAACCATCAACAACTTG+TGG | - | chr5_3:45930719-45930738 | None:intergenic | 40.0% | |
!! | CAAGTTGTTGATGGTTTGCA+AGG | + | chr5_3:45930719-45930738 | Msa0814110:CDS | 40.0% |
GAGTGGTACAATGGTATGAT+TGG | - | chr5_3:45931013-45931032 | None:intergenic | 40.0% | |
CATACCATTGTACCACTCAT+TGG | + | chr5_3:45931015-45931034 | Msa0814110:intron | 40.0% | |
! | GGACAAAGACCATTTTGCTT+CGG | + | chr5_3:45931039-45931058 | Msa0814110:intron | 40.0% |
! | GACAAAGACCATTTTGCTTC+GGG | + | chr5_3:45931040-45931059 | Msa0814110:intron | 40.0% |
AAACAAAGCCCGAAGCAAAA+TGG | - | chr5_3:45931051-45931070 | None:intergenic | 40.0% | |
TACAAAACCCTCCTCATTTG+AGG | + | chr5_3:45931183-45931202 | Msa0814110:intron | 40.0% | |
ACAAAACCCTCCTCATTTGA+GGG | + | chr5_3:45931184-45931203 | Msa0814110:intron | 40.0% | |
TTAGTTCCCTCAAATGAGGA+GGG | - | chr5_3:45931193-45931212 | None:intergenic | 40.0% | |
! | AAGGGAAAGAAAGGCTTTGA+GGG | - | chr5_3:45931405-45931424 | None:intergenic | 40.0% |
ATTGCATGATTGGAATGACG+AGG | + | chr5_3:45931758-45931777 | Msa0814110:CDS | 40.0% | |
AAAGAAAGGTAAAGGGAAGG+TGG | + | chr5_3:45931821-45931840 | Msa0814110:CDS | 40.0% | |
GAAGGTGGTTATCATTGACA+CGG | + | chr5_3:45931836-45931855 | Msa0814110:CDS | 40.0% | |
! | ACGGTGTTAGACAAAGAGAA+TGG | + | chr5_3:45931855-45931874 | Msa0814110:CDS | 40.0% |
!! | TTGATGATGGTAGTATTCGC+CGG | + | chr5_3:45931921-45931940 | Msa0814110:CDS | 40.0% |
TATTCCTTCTTCCTCATCCA+CGG | + | chr5_3:45932139-45932158 | Msa0814110:three_prime_UTR | 40.0% | |
! | ACAATGTAGAGGGATGGTTT+TGG | - | chr5_3:45932195-45932214 | None:intergenic | 40.0% |
AAAGAGGGAGACAATGTAGA+GGG | - | chr5_3:45932205-45932224 | None:intergenic | 40.0% | |
AAAAGAGGGAGACAATGTAG+AGG | - | chr5_3:45932206-45932225 | None:intergenic | 40.0% | |
! | TCTCCCTCTTTTGTCTTAAG+AGG | + | chr5_3:45932214-45932233 | Msa0814110:three_prime_UTR | 40.0% |
! | TCTTAAGAGGATGATTTGGG+TGG | + | chr5_3:45932227-45932246 | Msa0814110:three_prime_UTR | 40.0% |
GCAAGTATGGAATCCCAACA+TGG | + | chr5_3:45930035-45930054 | Msa0814110:exon | 45.0% | |
!!! | GGCTTTTTTGAAGGGTGGAT+TGG | - | chr5_3:45930227-45930246 | None:intergenic | 45.0% |
!!! | TGCAAGGCTTTTTTGAAGGG+TGG | - | chr5_3:45930232-45930251 | None:intergenic | 45.0% |
CAAGCAGAGAATTGATGCCA+TGG | - | chr5_3:45930431-45930450 | None:intergenic | 45.0% | |
CATGGCATCAATTCTCTGCT+TGG | + | chr5_3:45930429-45930448 | Msa0814110:CDS | 45.0% | |
!!! | AGCACATGGGATGTCGTTTT+GGG | + | chr5_3:45930484-45930503 | Msa0814110:CDS | 45.0% |
! | GAGTCATTGGTTGATGTTGG+AGG | + | chr5_3:45930623-45930642 | Msa0814110:CDS | 45.0% |
! | TCATTGGTTGATGTTGGAGG+AGG | + | chr5_3:45930626-45930645 | Msa0814110:CDS | 45.0% |
GATCTCCCACAAGTTGTTGA+TGG | + | chr5_3:45930710-45930729 | Msa0814110:CDS | 45.0% | |
ACCATTGTACCACTCATTGG+AGG | + | chr5_3:45931018-45931037 | Msa0814110:intron | 45.0% | |
TCCTCCAATGAGTGGTACAA+TGG | - | chr5_3:45931022-45931041 | None:intergenic | 45.0% | |
!! | GCTTTGTTTGCGAGTTTGGA+GGG | + | chr5_3:45931062-45931081 | Msa0814110:intron | 45.0% |
! | CTTTGTTTGCGAGTTTGGAG+GGG | + | chr5_3:45931063-45931082 | Msa0814110:intron | 45.0% |
ATAGAGAAAAATGGGAGGGG+AGG | + | chr5_3:45931132-45931151 | Msa0814110:intron | 45.0% | |
TAGAGAAAAATGGGAGGGGA+GGG | + | chr5_3:45931133-45931152 | Msa0814110:intron | 45.0% | |
CTTAGTTCCCTCAAATGAGG+AGG | - | chr5_3:45931194-45931213 | None:intergenic | 45.0% | |
TTGTATTGGAGGAGGGTTTG+TGG | + | chr5_3:45931217-45931236 | Msa0814110:intron | 45.0% | |
TGTATTGGAGGAGGGTTTGT+GGG | + | chr5_3:45931218-45931237 | Msa0814110:intron | 45.0% | |
!! | AGGGAAAGAAAGGCTTTGAG+GGG | - | chr5_3:45931404-45931423 | None:intergenic | 45.0% |
GAAGGGAAAGAAAGGCTTTG+AGG | - | chr5_3:45931406-45931425 | None:intergenic | 45.0% | |
ATTGTTCTCATGGAGGGGAA+GGG | - | chr5_3:45931423-45931442 | None:intergenic | 45.0% | |
AATTGTTCTCATGGAGGGGA+AGG | - | chr5_3:45931424-45931443 | None:intergenic | 45.0% | |
GTAGTCACTAAAACCAGCCA+AGG | - | chr5_3:45931985-45932004 | None:intergenic | 45.0% | |
! | AGAGTGGCATGGGTTTTCCA+TGG | - | chr5_3:45930184-45930203 | None:intergenic | 50.0% |
CGCATCAAGCGATAGATGCA+AGG | - | chr5_3:45930248-45930267 | None:intergenic | 50.0% | |
!! | ACATGTGGTGCCACACTCAT+TGG | - | chr5_3:45930377-45930396 | None:intergenic | 50.0% |
!! | CAGCACATGGGATGTCGTTT+TGG | + | chr5_3:45930483-45930502 | Msa0814110:CDS | 50.0% |
! | GGTTGATGTTGGAGGAGGTA+CGG | + | chr5_3:45930631-45930650 | Msa0814110:CDS | 50.0% |
! | GTTGATGTTGGAGGAGGTAC+GGG | + | chr5_3:45930632-45930651 | Msa0814110:CDS | 50.0% |
! | TTGATGTTGGAGGAGGTACG+GGG | + | chr5_3:45930633-45930652 | Msa0814110:CDS | 50.0% |
GGTCTTTGTCCTCCAATGAG+TGG | - | chr5_3:45931030-45931049 | None:intergenic | 50.0% | |
!! | TCGGGCTTTGTTTGCGAGTT+TGG | + | chr5_3:45931058-45931077 | Msa0814110:intron | 50.0% |
!! | GGCTTTGTTTGCGAGTTTGG+AGG | + | chr5_3:45931061-45931080 | Msa0814110:intron | 50.0% |
TTTGCGAGTTTGGAGGGGAA+TGG | + | chr5_3:45931068-45931087 | Msa0814110:intron | 50.0% | |
GTATTGGAGGAGGGTTTGTG+GGG | + | chr5_3:45931219-45931238 | Msa0814110:intron | 50.0% | |
!!! | AGGGTTTGTGGGGTTTTGGA+GGG | + | chr5_3:45931229-45931248 | Msa0814110:intron | 50.0% |
ATGGAGGGGAAGGGAAAGAA+AGG | - | chr5_3:45931414-45931433 | None:intergenic | 50.0% | |
TCTACCGTGGATGAGGAAGA+AGG | - | chr5_3:45932146-45932165 | None:intergenic | 50.0% | |
TTCTTCCTCATCCACGGTAG+AGG | + | chr5_3:45932145-45932164 | Msa0814110:three_prime_UTR | 50.0% | |
AGGGAGACAATGTAGAGGGA+TGG | - | chr5_3:45932201-45932220 | None:intergenic | 50.0% | |
AGTGTGGCACCACATGTGCA+CGG | + | chr5_3:45930380-45930399 | Msa0814110:CDS | 55.0% | |
CTGAGTATCCCGTGCACATG+TGG | - | chr5_3:45930392-45930411 | None:intergenic | 55.0% | |
CGAGTTTGGAGGGGAATGGA+GGG | + | chr5_3:45931072-45931091 | Msa0814110:intron | 55.0% | |
GAGTTTGGAGGGGAATGGAG+GGG | + | chr5_3:45931073-45931092 | Msa0814110:intron | 55.0% | |
AAAATGGGAGGGGAGGGCTT+TGG | + | chr5_3:45931139-45931158 | Msa0814110:intron | 55.0% | |
AAATGGGAGGGGAGGGCTTT+GGG | + | chr5_3:45931140-45931159 | Msa0814110:intron | 55.0% | |
! | GAGGAGGGTTTGTGGGGTTT+TGG | + | chr5_3:45931225-45931244 | Msa0814110:intron | 55.0% |
!! | GAGGGTTTGTGGGGTTTTGG+AGG | + | chr5_3:45931228-45931247 | Msa0814110:intron | 55.0% |
TCACTCCTCTACCGTGGATG+AGG | - | chr5_3:45932153-45932172 | None:intergenic | 55.0% | |
CCACAATCACTCCTCTACCG+TGG | - | chr5_3:45932159-45932178 | None:intergenic | 55.0% | |
CCACGGTAGAGGAGTGATTG+TGG | + | chr5_3:45932156-45932175 | Msa0814110:three_prime_UTR | 55.0% | |
GTGTGGCACCACATGTGCAC+GGG | + | chr5_3:45930381-45930400 | Msa0814110:CDS | 60.0% | |
GCGAGTTTGGAGGGGAATGG+AGG | + | chr5_3:45931071-45931090 | Msa0814110:intron | 60.0% | |
TTGGAGGGGAATGGAGGGGA+AGG | + | chr5_3:45931077-45931096 | Msa0814110:intron | 60.0% | |
AATGGGAGGGGAGGGCTTTG+GGG | + | chr5_3:45931141-45931160 | Msa0814110:intron | 60.0% | |
! | TGGAGGAGGTACGGGGACCA+TGG | + | chr5_3:45930640-45930659 | Msa0814110:CDS | 65.0% |
! | ATGGGAGGGGAGGGCTTTGG+GGG | + | chr5_3:45931142-45931161 | Msa0814110:intron | 65.0% |
!! | TGGGAGGGGAGGGCTTTGGG+GGG | + | chr5_3:45931143-45931162 | Msa0814110:intron | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5_3 | gene | 45929921 | 45932511 | 45929921 | ID=Msa0814110;Name=Msa0814110 |
chr5_3 | mRNA | 45929921 | 45932511 | 45929921 | ID=Msa0814110-mRNA-1;Parent=Msa0814110;Name=Msa0814110-mRNA-1;_AED=0.01;_eAED=0.01;_QI=120|1|1|1|1|1|2|456|358 |
chr5_3 | exon | 45929921 | 45930814 | 45929921 | ID=Msa0814110-mRNA-1:exon:13950;Parent=Msa0814110-mRNA-1 |
chr5_3 | exon | 45931753 | 45932511 | 45931753 | ID=Msa0814110-mRNA-1:exon:13951;Parent=Msa0814110-mRNA-1 |
chr5_3 | five_prime_UTR | 45929921 | 45930040 | 45929921 | ID=Msa0814110-mRNA-1:five_prime_utr;Parent=Msa0814110-mRNA-1 |
chr5_3 | CDS | 45930041 | 45930814 | 45930041 | ID=Msa0814110-mRNA-1:cds;Parent=Msa0814110-mRNA-1 |
chr5_3 | CDS | 45931753 | 45932055 | 45931753 | ID=Msa0814110-mRNA-1:cds;Parent=Msa0814110-mRNA-1 |
chr5_3 | three_prime_UTR | 45932056 | 45932511 | 45932056 | ID=Msa0814110-mRNA-1:three_prime_utr;Parent=Msa0814110-mRNA-1 |
Gene Sequence |
Protein sequence |