Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0816090 | XP_003616331.1 | 96.104 | 308 | 10 | 1 | 1 | 306 | 300 | 607 | 0.0 | 616 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0816090 | sp|F4IMH3|NOC4_ARATH | 65.357 | 280 | 91 | 3 | 1 | 278 | 301 | 576 | 1.57e-127 | 378 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0816090 | G7K1U1 | 96.104 | 308 | 10 | 1 | 1 | 306 | 300 | 607 | 0.0 | 616 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0737180 | Msa0816090 | 0.800063 | 1.718277e-48 | -8.615850e-47 |
| Msa0816090 | Msa0856530 | 0.809535 | 1.803314e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0816090 | MtrunA17_Chr5g0434811 | 96.104 | 308 | 10 | 1 | 1 | 306 | 300 | 607 | 0.0 | 616 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0816090 | AT2G17250.1 | 65.357 | 280 | 91 | 3 | 1 | 278 | 301 | 576 | 1.60e-128 | 378 |
Find 72 sgRNAs with CRISPR-Local
Find 292 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAAATTAGTAGTATTAATT+AGG | 0.097140 | 5_3:+49973853 | None:intergenic |
| AATGGTCAAGGCCTGATTTC+TGG | 0.177335 | 5_3:+49975454 | None:intergenic |
| TTGCTTTCAGTTCCACCTTC+TGG | 0.244476 | 5_3:-49977018 | Msa0816090:CDS |
| CAAATTAGTAGTATTAATTA+GGG | 0.252601 | 5_3:+49973854 | None:intergenic |
| CTTGAGCAGGAAGCTCTCTT+TGG | 0.255727 | 5_3:-49974974 | Msa0816090:intron |
| TTTAGGTTTGCTTTGTCTCT+TGG | 0.268396 | 5_3:-49974788 | Msa0816090:intron |
| CAGATTCCTCAATGTTAAAA+TGG | 0.289979 | 5_3:+49975436 | None:intergenic |
| GAACGGGGCTAAAGATTTAT+TGG | 0.290532 | 5_3:-49974153 | Msa0816090:CDS |
| CCAATCCATGCTGGGTCATT+AGG | 0.303403 | 5_3:+49978198 | None:intergenic |
| TTAGGTTTGCTTTGTCTCTT+GGG | 0.321498 | 5_3:-49974787 | Msa0816090:intron |
| ATTAGTTCCATCTATCTTCA+TGG | 0.328121 | 5_3:-49978141 | Msa0816090:CDS |
| GGTTCTTATGCAACAATACT+TGG | 0.336089 | 5_3:-49974707 | Msa0816090:CDS |
| CTGCAGATACTTGAGATATA+TGG | 0.357343 | 5_3:-49973950 | Msa0816090:three_prime_UTR |
| ACCCCTTCTTCCAGCTTACC+TGG | 0.387473 | 5_3:-49977073 | Msa0816090:CDS |
| TGCATTGGTTATTACAGCTC+TGG | 0.389369 | 5_3:-49976995 | Msa0816090:CDS |
| TATTAATTAGGGGTATGTTT+AGG | 0.389918 | 5_3:+49973865 | None:intergenic |
| GCTGGGTCATTAGGATATAA+AGG | 0.391038 | 5_3:+49978207 | None:intergenic |
| AAAACAAGCGAAGTTAATAT+TGG | 0.391828 | 5_3:-49974743 | Msa0816090:CDS |
| TTGAGCAGGAAGCTCTCTTT+GGG | 0.394155 | 5_3:-49974973 | Msa0816090:intron |
| CTGGAAGAAGGGGTGACTTT+AGG | 0.399170 | 5_3:+49977082 | None:intergenic |
| CGAAGAGACTGCTTCTAACT+TGG | 0.405411 | 5_3:-49975505 | Msa0816090:CDS |
| CGATCAACTGTTTGGTGCAC+CGG | 0.416098 | 5_3:-49976945 | Msa0816090:CDS |
| GCAAAGCTCTGCCAGAAATC+AGG | 0.417403 | 5_3:-49975465 | Msa0816090:CDS |
| GTGAAATTAAAATGTTTGTT+TGG | 0.426506 | 5_3:-49974059 | Msa0816090:three_prime_UTR |
| TCATCGACAATAATGAGAAC+GGG | 0.429049 | 5_3:-49974169 | Msa0816090:CDS |
| AGTTCCACCTTCTGGTGCAT+TGG | 0.437968 | 5_3:-49977010 | Msa0816090:CDS |
| ACATCCTTCGATCAACTGTT+TGG | 0.439932 | 5_3:-49976953 | Msa0816090:CDS |
| CTCATAGCGCCTGACTTCAT+AGG | 0.448545 | 5_3:+49975411 | None:intergenic |
| AATGAGGCAGCCAGGTAAGC+TGG | 0.457951 | 5_3:+49977063 | None:intergenic |
| TTGGGTATTCCAATCCATGC+TGG | 0.473646 | 5_3:+49978189 | None:intergenic |
| CCTAATGACCCAGCATGGAT+TGG | 0.485238 | 5_3:-49978198 | Msa0816090:CDS |
| CAGCCAGGTAAGCTGGAAGA+AGG | 0.488496 | 5_3:+49977070 | None:intergenic |
| AGCCAGGTAAGCTGGAAGAA+GGG | 0.489279 | 5_3:+49977071 | None:intergenic |
| ACTCAATTTCTTTGCAAATG+AGG | 0.492729 | 5_3:+49977047 | None:intergenic |
| CAAAACACTTACCGTGAGAC+AGG | 0.494028 | 5_3:+49974918 | None:intergenic |
| GAATCTGATCCTATGAAGTC+AGG | 0.505902 | 5_3:-49975420 | Msa0816090:CDS |
| TTGACAAGGTCGTATGATGT+AGG | 0.506754 | 5_3:-49978260 | Msa0816090:CDS |
| TTCTCTGAAAAGAGAGAGGA+TGG | 0.507254 | 5_3:+49974239 | None:intergenic |
| GATTACACGGAGGGTGAAGC+AGG | 0.509973 | 5_3:-49974288 | Msa0816090:CDS |
| TCTTTGCAAATGAGGCAGCC+AGG | 0.517329 | 5_3:+49977055 | None:intergenic |
| TGGGTATTCCAATCCATGCT+GGG | 0.522547 | 5_3:+49978190 | None:intergenic |
| GAGGAATCACTGCTTGGTGA+AGG | 0.547446 | 5_3:+49978394 | None:intergenic |
| GGCTAAAGATTTATTGGACC+AGG | 0.548798 | 5_3:-49974147 | Msa0816090:CDS |
| GATCAACTGTTTGGTGCACC+GGG | 0.550891 | 5_3:-49976944 | Msa0816090:intron |
| AACTTGGATAATACTCAGAA+TGG | 0.551493 | 5_3:-49975489 | Msa0816090:CDS |
| GCCAGGTAAGCTGGAAGAAG+GGG | 0.560855 | 5_3:+49977072 | None:intergenic |
| GGTGTTTACCATAACATGAT+GGG | 0.565453 | 5_3:+49978360 | None:intergenic |
| TTGCACCATTGCAGATTACA+CGG | 0.577570 | 5_3:-49974301 | Msa0816090:intron |
| CCTCAATGTTAAAATGGTCA+AGG | 0.580409 | 5_3:+49975442 | None:intergenic |
| AGACAGGAGGACAGTAGTGG+TGG | 0.591867 | 5_3:+49974934 | None:intergenic |
| ACAGATGAGGAATCACTGCT+TGG | 0.595439 | 5_3:+49978388 | None:intergenic |
| TCATGGCAAAACATCGTGCA+AGG | 0.595702 | 5_3:-49978124 | Msa0816090:CDS |
| ACCATTGCAGATTACACGGA+GGG | 0.596485 | 5_3:-49974297 | Msa0816090:intron |
| TTATGCAACAATACTTGGAG+CGG | 0.603488 | 5_3:-49974702 | Msa0816090:CDS |
| TATATCCTAATGACCCAGCA+TGG | 0.606697 | 5_3:-49978203 | Msa0816090:CDS |
| TGCAACAATACTTGGAGCGG+AGG | 0.610817 | 5_3:-49974699 | Msa0816090:intron |
| ATCATCGACAATAATGAGAA+CGG | 0.612651 | 5_3:-49974170 | Msa0816090:CDS |
| ATCATTCTCTGAAAAGAGAG+AGG | 0.615510 | 5_3:+49974235 | None:intergenic |
| ATAACCAATGCACCAGAAGG+TGG | 0.616650 | 5_3:+49977006 | None:intergenic |
| TGCACCAAACAGTTGATCGA+AGG | 0.618010 | 5_3:+49976949 | None:intergenic |
| ACTACTGTCCTCCTGTCTCA+CGG | 0.630327 | 5_3:-49974929 | Msa0816090:intron |
| GTAATAACCAATGCACCAGA+AGG | 0.635450 | 5_3:+49977003 | None:intergenic |
| GTGAGACAGGAGGACAGTAG+TGG | 0.650028 | 5_3:+49974931 | None:intergenic |
| CATTTGCAAAGAAATTGAGT+AGG | 0.655411 | 5_3:-49977044 | Msa0816090:CDS |
| TGTGCAGTGATTTCTTGACA+AGG | 0.666059 | 5_3:-49978274 | Msa0816090:intron |
| AGGTGGTGTAGTCAGCGTGA+TGG | 0.671351 | 5_3:-49978240 | Msa0816090:CDS |
| AACACTTACCGTGAGACAGG+AGG | 0.675774 | 5_3:+49974921 | None:intergenic |
| CATCGACAATAATGAGAACG+GGG | 0.677716 | 5_3:-49974168 | Msa0816090:CDS |
| ACAAGGTCGTATGATGTAGG+TGG | 0.691770 | 5_3:-49978257 | Msa0816090:CDS |
| ATGATGGGATTAGACAGATG+AGG | 0.697642 | 5_3:+49978375 | None:intergenic |
| AAATTAGTAGTATTAATTAG+GGG | 0.699771 | 5_3:+49973855 | None:intergenic |
| CACCATTGCAGATTACACGG+AGG | 0.732506 | 5_3:-49974298 | Msa0816090:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAGATAAAAAATTTCTATT+TGG | - | chr5_3:49974683-49974702 | Msa0816090:intron | 10.0% |
| !! | GTTTCTAATTTATATAAAAT+TGG | - | chr5_3:49977686-49977705 | Msa0816090:intron | 10.0% |
| !!! | TATATTTTTTATTTTTCTGT+TGG | - | chr5_3:49978231-49978250 | Msa0816090:CDS | 10.0% |
| !!! | ATATTTTTTATTTTTCTGTT+GGG | - | chr5_3:49978232-49978251 | Msa0816090:CDS | 10.0% |
| !!! | AGAGTTTTTCATAAAATTTT+GGG | + | chr5_3:49974084-49974103 | None:intergenic | 15.0% |
| !!! | TAGAGTTTTTCATAAAATTT+TGG | + | chr5_3:49974085-49974104 | None:intergenic | 15.0% |
| !! | TGTAAATTATATCTAAATGT+TGG | + | chr5_3:49976509-49976528 | None:intergenic | 15.0% |
| !!! | ATATATGGTAAATTTTGTAA+GGG | - | chr5_3:49978317-49978336 | Msa0816090:intron | 15.0% |
| !! | AAATTAGTAGTATTAATTAG+GGG | + | chr5_3:49978400-49978419 | None:intergenic | 15.0% |
| !! | CAAATTAGTAGTATTAATTA+GGG | + | chr5_3:49978401-49978420 | None:intergenic | 15.0% |
| !! | ACAAATTAGTAGTATTAATT+AGG | + | chr5_3:49978402-49978421 | None:intergenic | 15.0% |
| !!! | CAGAAATTGACATTTTATTA+TGG | - | chr5_3:49973920-49973939 | Msa0816090:three_prime_UTR | 20.0% |
| !! | ATGCTGCAAAATTAATTTAT+CGG | - | chr5_3:49974607-49974626 | Msa0816090:intron | 20.0% |
| !!! | AGCATATATCATTTTCTAAA+TGG | + | chr5_3:49975495-49975514 | None:intergenic | 20.0% |
| !!! | ACTTTTCTATTCATCTTATT+CGG | - | chr5_3:49975528-49975547 | Msa0816090:CDS | 20.0% |
| !! | AAAAATCTGCAATATAATTC+TGG | - | chr5_3:49976149-49976168 | Msa0816090:intron | 20.0% |
| !!! | GAAAGATTTGTTAACTTAAA+TGG | - | chr5_3:49976326-49976345 | Msa0816090:intron | 20.0% |
| !! | ACAATACATGTAAAACTAAA+TGG | + | chr5_3:49977038-49977057 | None:intergenic | 20.0% |
| !! | CATGTATTGTTAATGTTATA+TGG | - | chr5_3:49977048-49977067 | Msa0816090:CDS | 20.0% |
| !! | AAGATTAAATACAACAATGA+AGG | + | chr5_3:49977391-49977410 | None:intergenic | 20.0% |
| !!! | GTAAAAGCATATAATGTTTA+AGG | + | chr5_3:49977437-49977456 | None:intergenic | 20.0% |
| !!! | CATTTTTGTATTTTGTATAC+TGG | - | chr5_3:49977801-49977820 | Msa0816090:intron | 20.0% |
| !!! | AATTTTATTTTTGTCCTACA+AGG | + | chr5_3:49977842-49977861 | None:intergenic | 20.0% |
| !!! | AACAAACATTTTAATTTCAC+AGG | + | chr5_3:49978193-49978212 | None:intergenic | 20.0% |
| !! | GTGAAATTAAAATGTTTGTT+TGG | - | chr5_3:49978193-49978212 | Msa0816090:CDS | 20.0% |
| !!! | GATATATGGTAAATTTTGTA+AGG | - | chr5_3:49978316-49978335 | Msa0816090:intron | 20.0% |
| ! | AAAATGTCAATTTCTGTAAC+AGG | + | chr5_3:49973916-49973935 | None:intergenic | 25.0% |
| ! | ATACATGTAAAACTAACCAA+TGG | - | chr5_3:49974187-49974206 | Msa0816090:CDS | 25.0% |
| ! | TACATGTAAAACTAACCAAT+GGG | - | chr5_3:49974188-49974207 | Msa0816090:CDS | 25.0% |
| ! | TAAATGCAACATTAATATGC+CGG | - | chr5_3:49974286-49974305 | Msa0816090:CDS | 25.0% |
| !! | TTAAATCGTTTTATCCAAAC+CGG | + | chr5_3:49974308-49974327 | None:intergenic | 25.0% |
| !!! | TTTTTTTTGCAACAATGATC+AGG | - | chr5_3:49974463-49974482 | Msa0816090:intron | 25.0% |
| !! | CTAGATAACATTCAATGTTT+TGG | + | chr5_3:49975027-49975046 | None:intergenic | 25.0% |
| !!! | CATTAGTAAATTTTGTTTCC+TGG | - | chr5_3:49975372-49975391 | Msa0816090:intron | 25.0% |
| ! | TACCAAACATAGATACAAAA+TGG | + | chr5_3:49975668-49975687 | None:intergenic | 25.0% |
| !!! | TGGTTTTATATAGAACACTT+TGG | - | chr5_3:49975935-49975954 | Msa0816090:intron | 25.0% |
| ! | GTATCTATGTTTCTCAAATT+AGG | - | chr5_3:49976018-49976037 | Msa0816090:intron | 25.0% |
| ! | TTCTCAAATTAGGTTTCTAT+TGG | - | chr5_3:49976028-49976047 | Msa0816090:intron | 25.0% |
| !! | TTATATTGCAGATTTTTGTC+TGG | + | chr5_3:49976146-49976165 | None:intergenic | 25.0% |
| ! | TGCAATTGAAAACTAAATAG+AGG | - | chr5_3:49976533-49976552 | Msa0816090:intron | 25.0% |
| ! | TTATTATCCCTAATCAAGTT+GGG | - | chr5_3:49976562-49976581 | Msa0816090:intron | 25.0% |
| !!! | AATTTCAAAATTTGTTGCTC+TGG | - | chr5_3:49976602-49976621 | Msa0816090:intron | 25.0% |
| ! | CTAATTTCTGATATTTGAAC+AGG | - | chr5_3:49976690-49976709 | Msa0816090:intron | 25.0% |
| ! | TTGTTAATGTTATATGGTCA+AGG | - | chr5_3:49977054-49977073 | Msa0816090:CDS | 25.0% |
| ! | AACAAATTAAGCATGACATT+AGG | - | chr5_3:49977160-49977179 | Msa0816090:intron | 25.0% |
| ! | TAAATACAACAATGAAGGAA+AGG | + | chr5_3:49977386-49977405 | None:intergenic | 25.0% |
| ! | AAAACAAGCGAAGTTAATAT+TGG | - | chr5_3:49977509-49977528 | Msa0816090:intron | 25.0% |
| ! | ATAAAGGACGAAAAACAAAA+TGG | + | chr5_3:49977586-49977605 | None:intergenic | 25.0% |
| ! | TATAAGGCACATTACTATAA+AGG | + | chr5_3:49977602-49977621 | None:intergenic | 25.0% |
| !! | ATGCAAATTTGGTGAATATA+AGG | + | chr5_3:49977618-49977637 | None:intergenic | 25.0% |
| ! | ATTCTCTTATCATGCAAATT+TGG | + | chr5_3:49977629-49977648 | None:intergenic | 25.0% |
| ! | AAATTTGCATGATAAGAGAA+TGG | - | chr5_3:49977628-49977647 | Msa0816090:intron | 25.0% |
| ! | CATTATTTATGTCAAATGTG+TGG | + | chr5_3:49977738-49977757 | None:intergenic | 25.0% |
| !! | TTGAAGATCAAAATTTTCAC+CGG | + | chr5_3:49978276-49978295 | None:intergenic | 25.0% |
| !! | TATTAATTAGGGGTATGTTT+AGG | + | chr5_3:49978390-49978409 | None:intergenic | 25.0% |
| ATTAGTTCCATCTATCTTCA+TGG | - | chr5_3:49974111-49974130 | Msa0816090:CDS | 30.0% | |
| !! | GTCATTTTATAAGCTTTACC+TGG | + | chr5_3:49974159-49974178 | None:intergenic | 30.0% |
| ACATGTAAAACTAACCAATG+GGG | - | chr5_3:49974189-49974208 | Msa0816090:CDS | 30.0% | |
| ATAAAACGATTTAAGCATGC+TGG | - | chr5_3:49974314-49974333 | Msa0816090:intron | 30.0% | |
| ACAACATCGTTAATATGCAA+CGG | - | chr5_3:49974426-49974445 | Msa0816090:intron | 30.0% | |
| !!! | AAAGTGTCATGTTTTTTGTC+TGG | - | chr5_3:49974650-49974669 | Msa0816090:intron | 30.0% |
| !!! | AAGTGTCATGTTTTTTGTCT+GGG | - | chr5_3:49974651-49974670 | Msa0816090:intron | 30.0% |
| ! | CTTTTTCTGTATAGCAATAG+AGG | + | chr5_3:49974742-49974761 | None:intergenic | 30.0% |
| ACCCAAAGAAATAGTCAATT+AGG | - | chr5_3:49974800-49974819 | Msa0816090:intron | 30.0% | |
| ! | GCCTAATTGACTATTTCTTT+GGG | + | chr5_3:49974804-49974823 | None:intergenic | 30.0% |
| ! | AGCCTAATTGACTATTTCTT+TGG | + | chr5_3:49974805-49974824 | None:intergenic | 30.0% |
| !! | AACCAAAGCATTGTATGTTA+TGG | - | chr5_3:49974850-49974869 | Msa0816090:intron | 30.0% |
| ! | GAAAAGAGAGGTATAATATG+GGG | + | chr5_3:49974936-49974955 | None:intergenic | 30.0% |
| ! | CGAAAAGAGAGGTATAATAT+GGG | + | chr5_3:49974937-49974956 | None:intergenic | 30.0% |
| ! | TCGAAAAGAGAGGTATAATA+TGG | + | chr5_3:49974938-49974957 | None:intergenic | 30.0% |
| ! | CTAATTCACTATTTCTTTGG+GGG | + | chr5_3:49974975-49974994 | None:intergenic | 30.0% |
| ! | CCTAATTCACTATTTCTTTG+GGG | + | chr5_3:49974976-49974995 | None:intergenic | 30.0% |
| ! | GCCTAATTCACTATTTCTTT+GGG | + | chr5_3:49974977-49974996 | None:intergenic | 30.0% |
| ! | AGCCTAATTCACTATTTCTT+TGG | + | chr5_3:49974978-49974997 | None:intergenic | 30.0% |
| TAATTGAGTGGTTTCTGTAA+TGG | - | chr5_3:49974997-49975016 | Msa0816090:intron | 30.0% | |
| ! | GTTATCTAGTGATGATGAAA+AGG | - | chr5_3:49975038-49975057 | Msa0816090:intron | 30.0% |
| TGCATATTGTCAGAAAATGA+AGG | + | chr5_3:49975121-49975140 | None:intergenic | 30.0% | |
| ACTCAATTTCTTTGCAAATG+AGG | + | chr5_3:49975208-49975227 | None:intergenic | 30.0% | |
| CATTTGCAAAGAAATTGAGT+AGG | - | chr5_3:49975208-49975227 | Msa0816090:intron | 30.0% | |
| TTTCCTGGATTACTATATCT+TGG | - | chr5_3:49975387-49975406 | Msa0816090:intron | 30.0% | |
| AAATGATATATGCTGTGTTC+AGG | - | chr5_3:49975501-49975520 | Msa0816090:CDS | 30.0% | |
| !!! | TGCCATTTTGTATCTATGTT+TGG | - | chr5_3:49975663-49975682 | Msa0816090:intron | 30.0% |
| ! | TCTACCATCTTTTCTACTAT+AGG | + | chr5_3:49975745-49975764 | None:intergenic | 30.0% |
| AAGATGGTAGAAACTAGATA+TGG | - | chr5_3:49975754-49975773 | Msa0816090:intron | 30.0% | |
| AGATGGTAGAAACTAGATAT+GGG | - | chr5_3:49975755-49975774 | Msa0816090:intron | 30.0% | |
| TATAGGAGAAGCTATTAAGA+AGG | - | chr5_3:49975882-49975901 | Msa0816090:intron | 30.0% | |
| TACTATGATAAGAGAAATGC+AGG | - | chr5_3:49976295-49976314 | Msa0816090:intron | 30.0% | |
| TGTCTTTCCATATAAGAGAT+CGG | + | chr5_3:49976370-49976389 | None:intergenic | 30.0% | |
| ATATTGTCTGATGTCACTAT+TGG | - | chr5_3:49976441-49976460 | Msa0816090:intron | 30.0% | |
| GTTATTATCCCTAATCAAGT+TGG | - | chr5_3:49976561-49976580 | Msa0816090:intron | 30.0% | |
| AAAAACACCCAACTTGATTA+GGG | + | chr5_3:49976572-49976591 | None:intergenic | 30.0% | |
| TCTCCAATTAAACAGAAAGA+AGG | + | chr5_3:49976669-49976688 | None:intergenic | 30.0% | |
| AACTTGGATAATACTCAGAA+TGG | - | chr5_3:49976763-49976782 | Msa0816090:intron | 30.0% | |
| CAGATTCCTCAATGTTAAAA+TGG | + | chr5_3:49976819-49976838 | None:intergenic | 30.0% | |
| ! | AACACACTTCAGGTTATATT+GGG | + | chr5_3:49976893-49976912 | None:intergenic | 30.0% |
| ! | TAACACACTTCAGGTTATAT+TGG | + | chr5_3:49976894-49976913 | None:intergenic | 30.0% |
| TAGGAAAAATAACACACTTC+AGG | + | chr5_3:49976903-49976922 | None:intergenic | 30.0% | |
| CGTCTTATAGCTTACAATAT+TGG | - | chr5_3:49977193-49977212 | Msa0816090:intron | 30.0% | |
| CTTCATCAGCAAAACAAATA+AGG | + | chr5_3:49977254-49977273 | None:intergenic | 30.0% | |
| ! | ATGCTTTTACTTGTGCTTTT+AGG | - | chr5_3:49977447-49977466 | Msa0816090:intron | 30.0% |
| !! | AATATTGGTGATTTTAGTGC+TGG | - | chr5_3:49977524-49977543 | Msa0816090:intron | 30.0% |
| ! | CAAATAACTTTTCTCCTTGT+AGG | - | chr5_3:49977825-49977844 | Msa0816090:intron | 30.0% |
| ! | TTTTCAGAGAATGATTTTGC+TGG | - | chr5_3:49978025-49978044 | Msa0816090:intron | 30.0% |
| ATCATCGACAATAATGAGAA+CGG | - | chr5_3:49978082-49978101 | Msa0816090:intron | 30.0% | |
| TTTCTGTTGGGAAAGAAAAA+AGG | - | chr5_3:49978244-49978263 | Msa0816090:CDS | 30.0% | |
| ! | TGAAGATCAAAATTTTCACC+GGG | + | chr5_3:49978275-49978294 | None:intergenic | 30.0% |
| TGTCTAATCCCATCATGTTA+TGG | - | chr5_3:49973884-49973903 | Msa0816090:three_prime_UTR | 35.0% | |
| GGTGTTTACCATAACATGAT+GGG | + | chr5_3:49973895-49973914 | None:intergenic | 35.0% | |
| AGGTGTTTACCATAACATGA+TGG | + | chr5_3:49973896-49973915 | None:intergenic | 35.0% | |
| ! | TGTTTTGCCATGAAGATAGA+TGG | + | chr5_3:49974121-49974140 | None:intergenic | 35.0% |
| ! | TTTTGCTTGATATTCCCCAT+TGG | + | chr5_3:49974206-49974225 | None:intergenic | 35.0% |
| TCCAACAATGCAACAAGAAT+AGG | - | chr5_3:49974364-49974383 | Msa0816090:intron | 35.0% | |
| TCCTATTCTTGTTGCATTGT+TGG | + | chr5_3:49974368-49974387 | None:intergenic | 35.0% | |
| ! | TTATTCTAGTTGGACCTGAT+TGG | + | chr5_3:49974505-49974524 | None:intergenic | 35.0% |
| CACAGCAGATTTATTCTAGT+TGG | + | chr5_3:49974515-49974534 | None:intergenic | 35.0% | |
| ATTTCTATTTGGCGCATAGA+TGG | - | chr5_3:49974694-49974713 | Msa0816090:intron | 35.0% | |
| TTATACCTCTCTTTGCTAAG+TGG | - | chr5_3:49974768-49974787 | Msa0816090:CDS | 35.0% | |
| TAACCGAGTAGTTTCTGTAA+TGG | - | chr5_3:49974824-49974843 | Msa0816090:intron | 35.0% | |
| AACCGAGTAGTTTCTGTAAT+GGG | - | chr5_3:49974825-49974844 | Msa0816090:intron | 35.0% | |
| TTCCCATTACAGAAACTACT+CGG | + | chr5_3:49974830-49974849 | None:intergenic | 35.0% | |
| CTCCATAACATACAATGCTT+TGG | + | chr5_3:49974855-49974874 | None:intergenic | 35.0% | |
| ! | TTATACCTCTCTTTTCGAAG+TGG | - | chr5_3:49974940-49974959 | Msa0816090:CDS | 35.0% |
| CCCCAAAGAAATAGTGAATT+AGG | - | chr5_3:49974973-49974992 | Msa0816090:intron | 35.0% | |
| AGTGAATTAGGCTAATTGAG+TGG | - | chr5_3:49974985-49975004 | Msa0816090:intron | 35.0% | |
| GAAACAAGACTATCTTTACC+CGG | + | chr5_3:49975329-49975348 | None:intergenic | 35.0% | |
| TCTCCAAGATATAGTAATCC+AGG | + | chr5_3:49975393-49975412 | None:intergenic | 35.0% | |
| ACACTTGCATGTTTGTGATA+TGG | - | chr5_3:49975624-49975643 | Msa0816090:intron | 35.0% | |
| ATTACAACATTAGCGAGAGT+TGG | - | chr5_3:49975712-49975731 | Msa0816090:intron | 35.0% | |
| TTACAACATTAGCGAGAGTT+GGG | - | chr5_3:49975713-49975732 | Msa0816090:intron | 35.0% | |
| AGCACCTATAGTAGAAAAGA+TGG | - | chr5_3:49975738-49975757 | Msa0816090:intron | 35.0% | |
| AAACTAGATATGGGTGGTTT+GGG | - | chr5_3:49975764-49975783 | Msa0816090:intron | 35.0% | |
| GGAAGACCTAGAAAAACTAT+AGG | - | chr5_3:49975865-49975884 | Msa0816090:intron | 35.0% | |
| ! | GCTTCTCCTATAGTTTTTCT+AGG | + | chr5_3:49975874-49975893 | None:intergenic | 35.0% |
| GGATCTAGAGATTAATGAGT+TGG | - | chr5_3:49975903-49975922 | Msa0816090:intron | 35.0% | |
| ! | TAATGAGTTGGAGAAAGACA+TGG | - | chr5_3:49975915-49975934 | Msa0816090:intron | 35.0% |
| CTGCAATATAATTCTGGCAT+AGG | - | chr5_3:49976155-49976174 | Msa0816090:intron | 35.0% | |
| CAATATAATTCTGGCATAGG+AGG | - | chr5_3:49976158-49976177 | Msa0816090:intron | 35.0% | |
| AGTGACATCAGACAATATGA+CGG | + | chr5_3:49976439-49976458 | None:intergenic | 35.0% | |
| CAAAAACACCCAACTTGATT+AGG | + | chr5_3:49976573-49976592 | None:intergenic | 35.0% | |
| CCAATTAAACAGAAAGAAGG+CGG | + | chr5_3:49976666-49976685 | None:intergenic | 35.0% | |
| CCTCAATGTTAAAATGGTCA+AGG | + | chr5_3:49976813-49976832 | None:intergenic | 35.0% | |
| !! | CCTTGACCATTTTAACATTG+AGG | - | chr5_3:49976810-49976829 | Msa0816090:intron | 35.0% |
| ! | TATTTTTCCTAAACCAGACC+AGG | - | chr5_3:49976912-49976931 | Msa0816090:intron | 35.0% |
| ! | ACAGTTTTCCAATTTTCTCC+TGG | + | chr5_3:49976933-49976952 | None:intergenic | 35.0% |
| CTATACATACATATTGCGTG+AGG | - | chr5_3:49976993-49977012 | Msa0816090:CDS | 35.0% | |
| !!! | ACGGTAAGTGTTTTGATCTT+TGG | - | chr5_3:49977342-49977361 | Msa0816090:intron | 35.0% |
| CAATGAAGGAAAGGAAAACA+AGG | + | chr5_3:49977377-49977396 | None:intergenic | 35.0% | |
| ! | TTTAGGTTTGCTTTGTCTCT+TGG | - | chr5_3:49977464-49977483 | Msa0816090:intron | 35.0% |
| ! | TTAGGTTTGCTTTGTCTCTT+GGG | - | chr5_3:49977465-49977484 | Msa0816090:intron | 35.0% |
| GGTTCTTATGCAACAATACT+TGG | - | chr5_3:49977545-49977564 | Msa0816090:intron | 35.0% | |
| TTATGCAACAATACTTGGAG+CGG | - | chr5_3:49977550-49977569 | Msa0816090:intron | 35.0% | |
| !!! | TGTTTTTAGTCGTTCATCAG+TGG | - | chr5_3:49977758-49977777 | Msa0816090:intron | 35.0% |
| ATACTCATCCTTGTATCTTC+TGG | - | chr5_3:49977921-49977940 | Msa0816090:intron | 35.0% | |
| !! | GTTGTTTTGTAGAATGCTAG+AGG | + | chr5_3:49977992-49978011 | None:intergenic | 35.0% |
| ! | ATCATTCTCTGAAAAGAGAG+AGG | + | chr5_3:49978020-49978039 | None:intergenic | 35.0% |
| TCATCGACAATAATGAGAAC+GGG | - | chr5_3:49978083-49978102 | Msa0816090:intron | 35.0% | |
| ! | TCAATTCGTTGTCTTTTAGC+GGG | + | chr5_3:49978139-49978158 | None:intergenic | 35.0% |
| ! | CTCAATTCGTTGTCTTTTAG+CGG | + | chr5_3:49978140-49978159 | None:intergenic | 35.0% |
| ! | GAAGATCAAAATTTTCACCG+GGG | + | chr5_3:49978274-49978293 | None:intergenic | 35.0% |
| CTGCAGATACTTGAGATATA+TGG | - | chr5_3:49978302-49978321 | Msa0816090:intron | 35.0% | |
| ! | ATGATGGGATTAGACAGATG+AGG | + | chr5_3:49973880-49973899 | None:intergenic | 40.0% |
| TGTGCAGTGATTTCTTGACA+AGG | - | chr5_3:49973978-49973997 | Msa0816090:three_prime_UTR | 40.0% | |
| TTGACAAGGTCGTATGATGT+AGG | - | chr5_3:49973992-49974011 | Msa0816090:three_prime_UTR | 40.0% | |
| GCTGGGTCATTAGGATATAA+AGG | + | chr5_3:49974048-49974067 | None:intergenic | 40.0% | |
| TATATCCTAATGACCCAGCA+TGG | - | chr5_3:49974049-49974068 | Msa0816090:three_prime_UTR | 40.0% | |
| ! | GCAACATTAATATGCCGGTT+TGG | - | chr5_3:49974291-49974310 | Msa0816090:intron | 40.0% |
| ! | TGATCAGGTCCAATTAGTCT+AGG | - | chr5_3:49974478-49974497 | Msa0816090:intron | 40.0% |
| CTGATTGGACCTAGACTAAT+TGG | + | chr5_3:49974490-49974509 | None:intergenic | 40.0% | |
| ! | CAATTAGTCTAGGTCCAATC+AGG | - | chr5_3:49974488-49974507 | Msa0816090:intron | 40.0% |
| !!! | TGTCATGTTTTTTGTCTGGG+AGG | - | chr5_3:49974654-49974673 | Msa0816090:intron | 40.0% |
| !!! | GTCATGTTTTTTGTCTGGGA+GGG | - | chr5_3:49974655-49974674 | Msa0816090:intron | 40.0% |
| ATTTGGCGCATAGATGGATA+TGG | - | chr5_3:49974700-49974719 | Msa0816090:CDS | 40.0% | |
| ATGGATATGGAATGCGATTG+AGG | - | chr5_3:49974713-49974732 | Msa0816090:CDS | 40.0% | |
| ATTGTCCACTTCGAAAAGAG+AGG | + | chr5_3:49974948-49974967 | None:intergenic | 40.0% | |
| GTAATAACCAATGCACCAGA+AGG | + | chr5_3:49975252-49975271 | None:intergenic | 40.0% | |
| !! | TGCATTGGTTATTACAGCTC+TGG | - | chr5_3:49975257-49975276 | Msa0816090:intron | 40.0% |
| ACATCCTTCGATCAACTGTT+TGG | - | chr5_3:49975299-49975318 | Msa0816090:intron | 40.0% | |
| ATACGAAGTCAAGAGAACAG+AGG | - | chr5_3:49975427-49975446 | Msa0816090:CDS | 40.0% | |
| TACGAAGTCAAGAGAACAGA+GGG | - | chr5_3:49975428-49975447 | Msa0816090:CDS | 40.0% | |
| TACAACATTAGCGAGAGTTG+GGG | - | chr5_3:49975714-49975733 | Msa0816090:intron | 40.0% | |
| TGGTAGAAACTAGATATGGG+TGG | - | chr5_3:49975758-49975777 | Msa0816090:intron | 40.0% | |
| GAAACTAGATATGGGTGGTT+TGG | - | chr5_3:49975763-49975782 | Msa0816090:intron | 40.0% | |
| GGTAAAGAGAGTAGATCTGA+TGG | - | chr5_3:49975816-49975835 | Msa0816090:intron | 40.0% | |
| AAAGAGAGTAGATCTGATGG+AGG | - | chr5_3:49975819-49975838 | Msa0816090:intron | 40.0% | |
| AAGAGAGTAGATCTGATGGA+GGG | - | chr5_3:49975820-49975839 | Msa0816090:intron | 40.0% | |
| AGGTCAAATCACTAGAGGTA+GGG | - | chr5_3:49975843-49975862 | Msa0816090:intron | 40.0% | |
| ATGTAGCGAACTCCACTTAT+TGG | - | chr5_3:49975971-49975990 | Msa0816090:intron | 40.0% | |
| TGTAGCGAACTCCACTTATT+GGG | - | chr5_3:49975972-49975991 | Msa0816090:intron | 40.0% | |
| GAACTCCACTTATTGGGTTA+AGG | - | chr5_3:49975978-49975997 | Msa0816090:intron | 40.0% | |
| !! | TCACTTTGAAACTCAGCTGT+TGG | - | chr5_3:49976102-49976121 | Msa0816090:intron | 40.0% |
| GTTGGATTGCAGATTTGTGT+AGG | - | chr5_3:49976120-49976139 | Msa0816090:intron | 40.0% | |
| GGAAACATGGAGGATGTAAT+AGG | - | chr5_3:49976179-49976198 | Msa0816090:intron | 40.0% | |
| ATGTTGACAAATTGCAGCCA+TGG | + | chr5_3:49976274-49976293 | None:intergenic | 40.0% | |
| GATAAGAGAAATGCAGGCAT+TGG | - | chr5_3:49976301-49976320 | Msa0816090:intron | 40.0% | |
| CTACTGTCCGATCTCTTATA+TGG | - | chr5_3:49976360-49976379 | Msa0816090:intron | 40.0% | |
| !! | ATGTCACTATTGGTTCTGTC+TGG | - | chr5_3:49976451-49976470 | Msa0816090:intron | 40.0% |
| !! | TGTCACTATTGGTTCTGTCT+GGG | - | chr5_3:49976452-49976471 | Msa0816090:intron | 40.0% |
| TGTTGGATGAAGCAAGATGT+TGG | + | chr5_3:49976492-49976511 | None:intergenic | 40.0% | |
| CCGCCTTCTTTCTGTTTAAT+TGG | - | chr5_3:49976663-49976682 | Msa0816090:intron | 40.0% | |
| GAATCTGATCCTATGAAGTC+AGG | - | chr5_3:49976832-49976851 | Msa0816090:intron | 40.0% | |
| !! | ATTTTCTCCTGGTCTGGTTT+AGG | + | chr5_3:49976922-49976941 | None:intergenic | 40.0% |
| AAACCAGACCAGGAGAAAAT+TGG | - | chr5_3:49976922-49976941 | Msa0816090:intron | 40.0% | |
| ! | TTTCCAATTTTCTCCTGGTC+TGG | + | chr5_3:49976928-49976947 | None:intergenic | 40.0% |
| TACATATTGCGTGAGGTAAG+AGG | - | chr5_3:49977000-49977019 | Msa0816090:CDS | 40.0% | |
| GCAAGCATGCATTCATGTAA+GGG | + | chr5_3:49977108-49977127 | None:intergenic | 40.0% | |
| AGCAAGCATGCATTCATGTA+AGG | + | chr5_3:49977109-49977128 | None:intergenic | 40.0% | |
| CTGATGAAGATTTCTTGAGC+AGG | - | chr5_3:49977265-49977284 | Msa0816090:intron | 40.0% | |
| CGTTCATCAGTGGCTTATTA+AGG | - | chr5_3:49977768-49977787 | Msa0816090:intron | 40.0% | |
| TTGCACCATTGCAGATTACA+CGG | - | chr5_3:49977951-49977970 | Msa0816090:intron | 40.0% | |
| ! | TTCTCTGAAAAGAGAGAGGA+TGG | + | chr5_3:49978016-49978035 | None:intergenic | 40.0% |
| ! | CAGAGAATGATTTTGCTGGT+TGG | - | chr5_3:49978029-49978048 | Msa0816090:intron | 40.0% |
| CATCGACAATAATGAGAACG+GGG | - | chr5_3:49978084-49978103 | Msa0816090:intron | 40.0% | |
| GAACGGGGCTAAAGATTTAT+TGG | - | chr5_3:49978099-49978118 | Msa0816090:intron | 40.0% | |
| GGCTAAAGATTTATTGGACC+AGG | - | chr5_3:49978105-49978124 | Msa0816090:intron | 40.0% | |
| ! | CAATTCGTTGTCTTTTAGCG+GGG | + | chr5_3:49978138-49978157 | None:intergenic | 40.0% |
| ACAGATGAGGAATCACTGCT+TGG | + | chr5_3:49973867-49973886 | None:intergenic | 45.0% | |
| ACAAGGTCGTATGATGTAGG+TGG | - | chr5_3:49973995-49974014 | Msa0816090:three_prime_UTR | 45.0% | |
| TGGGTATTCCAATCCATGCT+GGG | + | chr5_3:49974065-49974084 | None:intergenic | 45.0% | |
| TTGGGTATTCCAATCCATGC+TGG | + | chr5_3:49974066-49974085 | None:intergenic | 45.0% | |
| TCATGGCAAAACATCGTGCA+AGG | - | chr5_3:49974128-49974147 | Msa0816090:CDS | 45.0% | |
| ! | ACATCGTGCAAGGTTTTTCC+AGG | - | chr5_3:49974138-49974157 | Msa0816090:CDS | 45.0% |
| CTTGTCCACTTAGCAAAGAG+AGG | + | chr5_3:49974776-49974795 | None:intergenic | 45.0% | |
| CTCTCTTTGCTAAGTGGACA+AGG | - | chr5_3:49974774-49974793 | Msa0816090:CDS | 45.0% | |
| TTGCTTTCAGTTCCACCTTC+TGG | - | chr5_3:49975234-49975253 | Msa0816090:intron | 45.0% | |
| ATAACCAATGCACCAGAAGG+TGG | + | chr5_3:49975249-49975268 | None:intergenic | 45.0% | |
| TGCACCAAACAGTTGATCGA+AGG | + | chr5_3:49975306-49975325 | None:intergenic | 45.0% | |
| CTCTTTACCACAGAATCCAC+AGG | + | chr5_3:49975805-49975824 | None:intergenic | 45.0% | |
| GAGGTCAAATCACTAGAGGT+AGG | - | chr5_3:49975842-49975861 | Msa0816090:intron | 45.0% | |
| GGTCAAATCACTAGAGGTAG+GGG | - | chr5_3:49975844-49975863 | Msa0816090:intron | 45.0% | |
| CCAAGCCTTAACCCAATAAG+TGG | + | chr5_3:49975986-49976005 | None:intergenic | 45.0% | |
| CCACTTATTGGGTTAAGGCT+TGG | - | chr5_3:49975983-49976002 | Msa0816090:intron | 45.0% | |
| AGGTTTCTATTGGTAGAGCC+AGG | - | chr5_3:49976038-49976057 | Msa0816090:intron | 45.0% | |
| TATTGGTAGAGCCAGGAGAT+TGG | - | chr5_3:49976045-49976064 | Msa0816090:intron | 45.0% | |
| TTGGTTGGATTCCTGGTTCA+AGG | - | chr5_3:49976064-49976083 | Msa0816090:intron | 45.0% | |
| TTGGATTCCTGGTTCAAGGA+TGG | - | chr5_3:49976068-49976087 | Msa0816090:intron | 45.0% | |
| CCTTAAACCATCCTTGAACC+AGG | + | chr5_3:49976078-49976097 | None:intergenic | 45.0% | |
| CCTGGTTCAAGGATGGTTTA+AGG | - | chr5_3:49976075-49976094 | Msa0816090:intron | 45.0% | |
| GGTTCAAGGATGGTTTAAGG+TGG | - | chr5_3:49976078-49976097 | Msa0816090:intron | 45.0% | |
| TTCTGGCATAGGAGGAAACA+TGG | - | chr5_3:49976166-49976185 | Msa0816090:intron | 45.0% | |
| ATCAGCACTGCCATAATCCA+TGG | - | chr5_3:49976238-49976257 | Msa0816090:intron | 45.0% | |
| TTGACAAATTGCAGCCATGG+TGG | + | chr5_3:49976271-49976290 | None:intergenic | 45.0% | |
| CGAAGAGACTGCTTCTAACT+TGG | - | chr5_3:49976747-49976766 | Msa0816090:intron | 45.0% | |
| AATGGTCAAGGCCTGATTTC+TGG | + | chr5_3:49976801-49976820 | None:intergenic | 45.0% | |
| TTGAGCAGGAAGCTCTCTTT+GGG | - | chr5_3:49977279-49977298 | Msa0816090:intron | 45.0% | |
| CAAAACACTTACCGTGAGAC+AGG | + | chr5_3:49977337-49977356 | None:intergenic | 45.0% | |
| AGTCGTCACCAGAAGATACA+AGG | + | chr5_3:49977932-49977951 | None:intergenic | 45.0% | |
| ACCATTGCAGATTACACGGA+GGG | - | chr5_3:49977955-49977974 | Msa0816090:intron | 45.0% | |
| ! | GAAAGAAAAAAGGCATGCCC+CGG | - | chr5_3:49978254-49978273 | Msa0816090:CDS | 45.0% |
| ! | GAGGAATCACTGCTTGGTGA+AGG | + | chr5_3:49973861-49973880 | None:intergenic | 50.0% |
| CCAATCCATGCTGGGTCATT+AGG | + | chr5_3:49974057-49974076 | None:intergenic | 50.0% | |
| CCTAATGACCCAGCATGGAT+TGG | - | chr5_3:49974054-49974073 | Msa0816090:three_prime_UTR | 50.0% | |
| CTGGAAGAAGGGGTGACTTT+AGG | + | chr5_3:49975173-49975192 | None:intergenic | 50.0% | |
| AGCCAGGTAAGCTGGAAGAA+GGG | + | chr5_3:49975184-49975203 | None:intergenic | 50.0% | |
| TCTTTGCAAATGAGGCAGCC+AGG | + | chr5_3:49975200-49975219 | None:intergenic | 50.0% | |
| AGTTCCACCTTCTGGTGCAT+TGG | - | chr5_3:49975242-49975261 | Msa0816090:intron | 50.0% | |
| !! | CGATCAACTGTTTGGTGCAC+CGG | - | chr5_3:49975307-49975326 | Msa0816090:intron | 50.0% |
| !! | GATCAACTGTTTGGTGCACC+GGG | - | chr5_3:49975308-49975327 | Msa0816090:intron | 50.0% |
| GCATGTAGAGAGAAGACCTG+TGG | - | chr5_3:49975786-49975805 | Msa0816090:intron | 50.0% | |
| GAGAAGACCTGTGGATTCTG+TGG | - | chr5_3:49975795-49975814 | Msa0816090:intron | 50.0% | |
| AGAGTAGATCTGATGGAGGG+AGG | - | chr5_3:49975823-49975842 | Msa0816090:intron | 50.0% | |
| GAGGGAGGTCAAATCACTAG+AGG | - | chr5_3:49975838-49975857 | Msa0816090:intron | 50.0% | |
| CAGGAATCCAACCAATCTCC+TGG | + | chr5_3:49976059-49976078 | None:intergenic | 50.0% | |
| ! | CAGGAGATTGGTTGGATTCC+TGG | - | chr5_3:49976057-49976076 | Msa0816090:intron | 50.0% |
| TGGCATAGGAGGAAACATGG+AGG | - | chr5_3:49976169-49976188 | Msa0816090:intron | 50.0% | |
| GGAGGATGTAATAGGCTCTG+TGG | - | chr5_3:49976187-49976206 | Msa0816090:intron | 50.0% | |
| GTAATAGGCTCTGTGGCCTA+TGG | - | chr5_3:49976194-49976213 | Msa0816090:intron | 50.0% | |
| ! | TGGCATGGCACCATGGATTA+TGG | + | chr5_3:49976251-49976270 | None:intergenic | 50.0% |
| AAATTGCAGCCATGGTGGCA+TGG | + | chr5_3:49976266-49976285 | None:intergenic | 50.0% | |
| GCAAAGCTCTGCCAGAAATC+AGG | - | chr5_3:49976787-49976806 | Msa0816090:intron | 50.0% | |
| CTCATAGCGCCTGACTTCAT+AGG | + | chr5_3:49976844-49976863 | None:intergenic | 50.0% | |
| CTTGAGCAGGAAGCTCTCTT+TGG | - | chr5_3:49977278-49977297 | Msa0816090:intron | 50.0% | |
| ACTACTGTCCTCCTGTCTCA+CGG | - | chr5_3:49977323-49977342 | Msa0816090:intron | 50.0% | |
| AACACTTACCGTGAGACAGG+AGG | + | chr5_3:49977334-49977353 | None:intergenic | 50.0% | |
| TGCAACAATACTTGGAGCGG+AGG | - | chr5_3:49977553-49977572 | Msa0816090:intron | 50.0% | |
| CACCATTGCAGATTACACGG+AGG | - | chr5_3:49977954-49977973 | Msa0816090:intron | 50.0% | |
| ACCCTCCGTGTAATCTGCAA+TGG | + | chr5_3:49977959-49977978 | None:intergenic | 50.0% | |
| AGGTGGTGTAGTCAGCGTGA+TGG | - | chr5_3:49974012-49974031 | Msa0816090:three_prime_UTR | 55.0% | |
| ACCCCTTCTTCCAGCTTACC+TGG | - | chr5_3:49975179-49975198 | Msa0816090:intron | 55.0% | |
| GCCAGGTAAGCTGGAAGAAG+GGG | + | chr5_3:49975183-49975202 | None:intergenic | 55.0% | |
| CAGCCAGGTAAGCTGGAAGA+AGG | + | chr5_3:49975185-49975204 | None:intergenic | 55.0% | |
| AATGAGGCAGCCAGGTAAGC+TGG | + | chr5_3:49975192-49975211 | None:intergenic | 55.0% | |
| GGTAGAGCCAGGAGATTGGT+TGG | - | chr5_3:49976049-49976068 | Msa0816090:intron | 55.0% | |
| AGACAGGAGGACAGTAGTGG+TGG | + | chr5_3:49977321-49977340 | None:intergenic | 55.0% | |
| GTGAGACAGGAGGACAGTAG+TGG | + | chr5_3:49977324-49977343 | None:intergenic | 55.0% | |
| GATTACACGGAGGGTGAAGC+AGG | - | chr5_3:49977964-49977983 | Msa0816090:intron | 55.0% | |
| ! | TTTTAGCGGGGCTGTGTTCC+TGG | + | chr5_3:49978126-49978145 | None:intergenic | 55.0% |
| GCTCTGTGGCCTATGGAAGC+TGG | - | chr5_3:49976201-49976220 | Msa0816090:intron | 60.0% | |
| GCCTATGGAAGCTGGAAGCC+TGG | - | chr5_3:49976209-49976228 | Msa0816090:intron | 60.0% | |
| GCCAGGCTTCCAGCTTCCAT+AGG | + | chr5_3:49976213-49976232 | None:intergenic | 60.0% | |
| !! | GGCAGTGCTGATTCTGTGCC+AGG | + | chr5_3:49976230-49976249 | None:intergenic | 60.0% |
| !! | TCCATGGTGCCATGCCACCA+TGG | - | chr5_3:49976254-49976273 | Msa0816090:intron | 60.0% |
| GCCATGGTGGCATGGCACCA+TGG | + | chr5_3:49976258-49976277 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 49973847 | 49978427 | 49973847 | ID=Msa0816090;Name=Msa0816090 |
| chr5_3 | mRNA | 49973847 | 49978427 | 49973847 | ID=Msa0816090-mRNA-1;Parent=Msa0816090;Name=Msa0816090-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0|0.66|0.57|1|0.83|0.85|7|259|306 |
| chr5_3 | exon | 49973847 | 49974309 | 49973847 | ID=Msa0816090-mRNA-1:exon:15072;Parent=Msa0816090-mRNA-1 |
| chr5_3 | exon | 49974700 | 49974805 | 49974700 | ID=Msa0816090-mRNA-1:exon:15071;Parent=Msa0816090-mRNA-1 |
| chr5_3 | exon | 49974930 | 49974987 | 49974930 | ID=Msa0816090-mRNA-1:exon:15070;Parent=Msa0816090-mRNA-1 |
| chr5_3 | exon | 49975412 | 49975562 | 49975412 | ID=Msa0816090-mRNA-1:exon:15069;Parent=Msa0816090-mRNA-1 |
| chr5_3 | exon | 49976945 | 49977118 | 49976945 | ID=Msa0816090-mRNA-1:exon:15068;Parent=Msa0816090-mRNA-1 |
| chr5_3 | exon | 49978115 | 49978289 | 49978115 | ID=Msa0816090-mRNA-1:exon:15067;Parent=Msa0816090-mRNA-1 |
| chr5_3 | exon | 49978375 | 49978427 | 49978375 | ID=Msa0816090-mRNA-1:exon:15066;Parent=Msa0816090-mRNA-1 |
| chr5_3 | CDS | 49978375 | 49978427 | 49978375 | ID=Msa0816090-mRNA-1:cds;Parent=Msa0816090-mRNA-1 |
| chr5_3 | CDS | 49978115 | 49978289 | 49978115 | ID=Msa0816090-mRNA-1:cds;Parent=Msa0816090-mRNA-1 |
| chr5_3 | CDS | 49976945 | 49977118 | 49976945 | ID=Msa0816090-mRNA-1:cds;Parent=Msa0816090-mRNA-1 |
| chr5_3 | CDS | 49975412 | 49975562 | 49975412 | ID=Msa0816090-mRNA-1:cds;Parent=Msa0816090-mRNA-1 |
| chr5_3 | CDS | 49974930 | 49974987 | 49974930 | ID=Msa0816090-mRNA-1:cds;Parent=Msa0816090-mRNA-1 |
| chr5_3 | CDS | 49974700 | 49974805 | 49974700 | ID=Msa0816090-mRNA-1:cds;Parent=Msa0816090-mRNA-1 |
| chr5_3 | CDS | 49974106 | 49974309 | 49974106 | ID=Msa0816090-mRNA-1:cds;Parent=Msa0816090-mRNA-1 |
| chr5_3 | three_prime_UTR | 49973847 | 49974105 | 49973847 | ID=Msa0816090-mRNA-1:three_prime_utr;Parent=Msa0816090-mRNA-1 |
| Gene Sequence |
| Protein sequence |
