Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0816480 | XP_003616375.2 | 96.486 | 313 | 9 | 1 | 1 | 313 | 1 | 311 | 0.0 | 624 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0816480 | sp|Q9FJ00|RSL1_ARATH | 53.968 | 189 | 65 | 5 | 132 | 313 | 121 | 294 | 1.25e-53 | 180 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0816480 | G7K1Y5 | 96.486 | 313 | 9 | 1 | 1 | 313 | 1 | 311 | 0.0 | 624 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0816480 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0816480 | Msa0856740 | 0.818454 | 1.944102e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0816480 | MtrunA17_Chr5g0435021 | 96.486 | 313 | 9 | 1 | 1 | 313 | 1 | 311 | 0.0 | 624 |
| Msa0816480 | MtrunA17_Chr5g0393721 | 62.500 | 72 | 27 | 0 | 217 | 288 | 221 | 292 | 2.17e-25 | 103 |
| Msa0816480 | MtrunA17_Chr1g0207311 | 50.000 | 94 | 41 | 2 | 199 | 288 | 173 | 264 | 1.66e-24 | 100 |
| Msa0816480 | MtrunA17_Chr1g0207301 | 46.667 | 120 | 51 | 3 | 169 | 288 | 250 | 356 | 1.54e-23 | 99.4 |
| Msa0816480 | MtrunA17_Chr3g0134741 | 58.571 | 70 | 29 | 0 | 219 | 288 | 228 | 297 | 1.15e-22 | 95.9 |
| Msa0816480 | MtrunA17_Chr1g0152651 | 62.903 | 62 | 23 | 0 | 227 | 288 | 281 | 342 | 2.03e-22 | 95.9 |
| Msa0816480 | MtrunA17_Chr8g0384141 | 53.165 | 79 | 35 | 2 | 204 | 282 | 100 | 176 | 3.35e-19 | 85.5 |
| Msa0816480 | MtrunA17_Chr3g0134001 | 62.500 | 56 | 21 | 0 | 227 | 282 | 178 | 233 | 2.02e-18 | 83.6 |
| Msa0816480 | MtrunA17_Chr7g0243041 | 66.038 | 53 | 18 | 0 | 227 | 279 | 33 | 85 | 7.98e-18 | 79.0 |
| Msa0816480 | MtrunA17_Chr4g0074161 | 43.925 | 107 | 54 | 3 | 182 | 283 | 164 | 269 | 2.38e-17 | 82.0 |
| Msa0816480 | MtrunA17_Chr1g0190731 | 50.769 | 65 | 32 | 0 | 219 | 283 | 192 | 256 | 1.86e-14 | 73.2 |
| Msa0816480 | MtrunA17_Chr5g0402161 | 55.696 | 79 | 33 | 1 | 204 | 282 | 123 | 199 | 4.11e-11 | 62.4 |
| Msa0816480 | MtrunA17_Chr1g0193321 | 49.020 | 51 | 26 | 0 | 233 | 283 | 475 | 525 | 9.22e-11 | 62.8 |
| Msa0816480 | MtrunA17_Chr1g0153241 | 37.805 | 82 | 46 | 1 | 201 | 282 | 71 | 147 | 9.41e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0816480 | AT5G37800.1 | 53.968 | 189 | 65 | 5 | 132 | 313 | 121 | 294 | 1.27e-54 | 180 |
| Msa0816480 | AT1G66470.1 | 62.585 | 147 | 48 | 2 | 165 | 311 | 147 | 286 | 3.07e-51 | 171 |
| Msa0816480 | AT2G14760.1 | 60.000 | 70 | 28 | 0 | 219 | 288 | 236 | 305 | 4.69e-24 | 100 |
| Msa0816480 | AT4G33880.1 | 60.000 | 70 | 28 | 0 | 219 | 288 | 265 | 334 | 8.23e-24 | 100 |
| Msa0816480 | AT1G27740.1 | 54.430 | 79 | 36 | 0 | 210 | 288 | 157 | 235 | 1.77e-23 | 97.4 |
| Msa0816480 | AT5G43175.1 | 58.442 | 77 | 30 | 1 | 214 | 288 | 124 | 200 | 1.92e-23 | 96.7 |
| Msa0816480 | AT2G14760.3 | 50.602 | 83 | 28 | 1 | 219 | 288 | 236 | 318 | 1.25e-20 | 91.3 |
| Msa0816480 | AT5G01305.1 | 57.576 | 66 | 28 | 0 | 214 | 279 | 31 | 96 | 4.86e-20 | 85.9 |
| Msa0816480 | AT2G24260.2 | 50.000 | 86 | 39 | 1 | 219 | 304 | 34 | 115 | 1.78e-19 | 86.3 |
| Msa0816480 | AT2G24260.1 | 50.000 | 86 | 39 | 1 | 219 | 304 | 137 | 218 | 1.03e-18 | 85.9 |
| Msa0816480 | AT4G30980.1 | 40.678 | 118 | 58 | 3 | 186 | 303 | 104 | 209 | 3.09e-18 | 84.0 |
| Msa0816480 | AT4G30980.2 | 40.678 | 118 | 58 | 3 | 186 | 303 | 152 | 257 | 4.51e-18 | 84.0 |
| Msa0816480 | AT4G00120.1 | 43.820 | 89 | 48 | 2 | 194 | 282 | 88 | 174 | 8.78e-17 | 77.8 |
| Msa0816480 | AT5G58010.1 | 50.000 | 72 | 36 | 0 | 212 | 283 | 91 | 162 | 1.03e-16 | 79.3 |
| Msa0816480 | AT3G21330.1 | 58.929 | 56 | 23 | 0 | 227 | 282 | 276 | 331 | 7.53e-16 | 77.8 |
| Msa0816480 | AT3G50330.1 | 52.222 | 90 | 39 | 2 | 204 | 293 | 105 | 190 | 1.27e-11 | 63.9 |
Find 45 sgRNAs with CRISPR-Local
Find 168 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCAGCTGTGCATGGCTTCT+TGG | 0.232597 | 5_3:-50835027 | None:intergenic |
| TGTTGGCAGCTGATGAATTT+TGG | 0.271276 | 5_3:+50835612 | Msa0816480:CDS |
| TTGCTGCAAATTATTCTCAT+TGG | 0.332794 | 5_3:-50834441 | None:intergenic |
| CTTGAAGAAGCGATCTTCTA+TGG | 0.360051 | 5_3:+50834688 | Msa0816480:CDS |
| GATGGTTCACAAAGCACTAA+TGG | 0.373871 | 5_3:+50834212 | Msa0816480:CDS |
| AATGCAAAAGAGAAGCAAAA+TGG | 0.391258 | 5_3:+50834563 | Msa0816480:CDS |
| CGTTTGGCACAAGTTCTTGT+AGG | 0.393441 | 5_3:-50835238 | None:intergenic |
| TTCTTACTTGCAGCTGTGCA+TGG | 0.415931 | 5_3:-50835035 | None:intergenic |
| TGCTTAGCTTTCAACAGAGC+TGG | 0.417572 | 5_3:+50834411 | Msa0816480:CDS |
| AAATCTACCTTGGAACCGTT+TGG | 0.425715 | 5_3:-50835254 | None:intergenic |
| ACCTTGGCAGCAACACTTTG+AGG | 0.436246 | 5_3:-50835089 | None:intergenic |
| TCGTCATCACAAGGGACATT+TGG | 0.448252 | 5_3:-50834617 | None:intergenic |
| TGTGCATGGCTTCTTGGCAT+TGG | 0.449331 | 5_3:-50835021 | None:intergenic |
| AGCAACACTTTGAGGATCCT+TGG | 0.463727 | 5_3:-50835081 | None:intergenic |
| TCCTCAAAGTGTTGCTGCCA+AGG | 0.467735 | 5_3:+50835088 | Msa0816480:CDS |
| GAAACTTCAAGTGGTAGCTA+TGG | 0.482106 | 5_3:+50834527 | Msa0816480:CDS |
| ATGAGAATAATTTGCAGCAA+TGG | 0.492330 | 5_3:+50834444 | Msa0816480:CDS |
| CATGGCTTCTTGGCATTGGT+AGG | 0.494730 | 5_3:-50835017 | None:intergenic |
| ACAATGTAGAATGTTGTTGT+TGG | 0.495112 | 5_3:-50834120 | None:intergenic |
| TCTCCTACTCTATGCAGAAA+AGG | 0.510749 | 5_3:+50834281 | Msa0816480:CDS |
| GAGTCTTTGATTAATTTCAA+AGG | 0.522051 | 5_3:+50834344 | Msa0816480:CDS |
| GGTTGATTTGGTTACCATGT+TGG | 0.524353 | 5_3:+50835431 | Msa0816480:intron |
| ACAAATTTGTGCATGGTGCA+AGG | 0.524955 | 5_3:+50834491 | Msa0816480:CDS |
| TCATCGTCGTCGTCATCACA+AGG | 0.527111 | 5_3:-50834626 | None:intergenic |
| ACACTTTGAGGATCCTTGGA+TGG | 0.541193 | 5_3:-50835077 | None:intergenic |
| CTACAAGAACTTGTGCCAAA+CGG | 0.551928 | 5_3:+50835239 | Msa0816480:CDS |
| GTTTCTTCAGTTGCAAGTGA+AGG | 0.554782 | 5_3:+50835476 | Msa0816480:CDS |
| TGATGATAGCTTAATAAAAG+AGG | 0.558766 | 5_3:+50834646 | Msa0816480:CDS |
| AGTAGGAGAATTTGTAATGG+CGG | 0.561726 | 5_3:-50834267 | None:intergenic |
| GGTGGAAAAGCTCCTGACAT+TGG | 0.579618 | 5_3:+50835644 | Msa0816480:CDS |
| TAGCTTTCAACAGAGCTGGA+TGG | 0.582750 | 5_3:+50834415 | Msa0816480:CDS |
| AGAAGATCGCTTCTTCAAGA+CGG | 0.585959 | 5_3:-50834684 | None:intergenic |
| ACTTGTGCCAAACGGTTCCA+AGG | 0.588357 | 5_3:+50835247 | Msa0816480:CDS |
| CAAAATGGTGAAAGTTCATG+TGG | 0.590862 | 5_3:+50834578 | Msa0816480:CDS |
| ACTAATTGCTTTCTCCAACA+TGG | 0.596287 | 5_3:-50835445 | None:intergenic |
| AATAGCTTTGAAACTTCAAG+TGG | 0.597044 | 5_3:+50834518 | Msa0816480:CDS |
| AAGTAACACAAATTTGTGCA+TGG | 0.601950 | 5_3:+50834484 | Msa0816480:CDS |
| ACATAAGTCAAATCCATCCA+AGG | 0.604373 | 5_3:+50835064 | Msa0816480:CDS |
| TAGAGTAGGAGAATTTGTAA+TGG | 0.607221 | 5_3:-50834270 | None:intergenic |
| TCTATGATTGAAGAAGAAGA+TGG | 0.607243 | 5_3:+50834194 | Msa0816480:CDS |
| ATGGTGAAAGTTCATGTGGA+TGG | 0.618317 | 5_3:+50834582 | Msa0816480:CDS |
| GAAGAGAGAGAATAAGTGAG+AGG | 0.626364 | 5_3:+50835207 | Msa0816480:CDS |
| TATTACAACAATCTCATGCA+AGG | 0.641770 | 5_3:+50834377 | Msa0816480:CDS |
| TGATAGCTTAATAAAAGAGG+CGG | 0.653073 | 5_3:+50834649 | Msa0816480:CDS |
| CATCGTCGTCGTCATCACAA+GGG | 0.710822 | 5_3:-50834625 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATTATTAGAACATATTT+AGG | + | chr5_3:50834913-50834932 | Msa0816480:intron | 10.0% |
| !!! | GATAAATTATTAATATTTTC+GGG | + | chr5_3:50835530-50835549 | Msa0816480:intron | 10.0% |
| !! | AAAATTATTAGAACATATTT+AGG | + | chr5_3:50834913-50834932 | Msa0816480:intron | 10.0% |
| !!! | GATAAATTATTAATATTTTC+GGG | + | chr5_3:50835530-50835549 | Msa0816480:intron | 10.0% |
| !! | ATCAAAATATGATATAACTT+GGG | - | chr5_3:50835125-50835144 | None:intergenic | 15.0% |
| !! | AATCAAAATATGATATAACT+TGG | - | chr5_3:50835126-50835145 | None:intergenic | 15.0% |
| !! | ATCAAAATATGATATAACTT+GGG | - | chr5_3:50835125-50835144 | None:intergenic | 15.0% |
| !! | AATCAAAATATGATATAACT+TGG | - | chr5_3:50835126-50835145 | None:intergenic | 15.0% |
| !!! | AAGAAAGCAAAATAACTTTT+AGG | - | chr5_3:50835290-50835309 | None:intergenic | 20.0% |
| !!! | AATTTTCAAAGACTTTAACT+TGG | - | chr5_3:50835367-50835386 | None:intergenic | 20.0% |
| !!! | TTTTGTTCTATATTTGTTCA+TGG | + | chr5_3:50835583-50835602 | Msa0816480:intron | 20.0% |
| !!! | AAGAAAGCAAAATAACTTTT+AGG | - | chr5_3:50835290-50835309 | None:intergenic | 20.0% |
| !!! | AATTTTCAAAGACTTTAACT+TGG | - | chr5_3:50835367-50835386 | None:intergenic | 20.0% |
| !!! | TTTTGTTCTATATTTGTTCA+TGG | + | chr5_3:50835583-50835602 | Msa0816480:intron | 20.0% |
| ! | GAGTCTTTGATTAATTTCAA+AGG | + | chr5_3:50834344-50834363 | Msa0816480:CDS | 25.0% |
| !!! | CACAAATTTGTGTTACTTTT+AGG | - | chr5_3:50834482-50834501 | None:intergenic | 25.0% |
| !! | CTCTTTTGCATTATTGAATA+TGG | - | chr5_3:50834555-50834574 | None:intergenic | 25.0% |
| ! | TGATGATAGCTTAATAAAAG+AGG | + | chr5_3:50834646-50834665 | Msa0816480:CDS | 25.0% |
| ! | AGCAAAATCTATTACCATTT+AGG | + | chr5_3:50834732-50834751 | Msa0816480:intron | 25.0% |
| ! | GAGTACTTAATGAAATAGAA+TGG | + | chr5_3:50834947-50834966 | Msa0816480:intron | 25.0% |
| ! | TAGAATGGAAAATTGAGATA+AGG | + | chr5_3:50834962-50834981 | Msa0816480:intron | 25.0% |
| !! | TAAGGTTTGTTTGTGTTTAT+AGG | + | chr5_3:50834980-50834999 | Msa0816480:intron | 25.0% |
| !! | AAGGTTTGTTTGTGTTTATA+GGG | + | chr5_3:50834981-50835000 | Msa0816480:intron | 25.0% |
| ! | ACTAATTTGAAAATCTACCT+TGG | - | chr5_3:50835267-50835286 | None:intergenic | 25.0% |
| ! | TTTATCAAATTAGTCCTTGA+AGG | - | chr5_3:50835516-50835535 | None:intergenic | 25.0% |
| ! | GAGTCTTTGATTAATTTCAA+AGG | + | chr5_3:50834344-50834363 | Msa0816480:CDS | 25.0% |
| !!! | CACAAATTTGTGTTACTTTT+AGG | - | chr5_3:50834482-50834501 | None:intergenic | 25.0% |
| !! | CTCTTTTGCATTATTGAATA+TGG | - | chr5_3:50834555-50834574 | None:intergenic | 25.0% |
| ! | TGATGATAGCTTAATAAAAG+AGG | + | chr5_3:50834646-50834665 | Msa0816480:CDS | 25.0% |
| ! | AGCAAAATCTATTACCATTT+AGG | + | chr5_3:50834732-50834751 | Msa0816480:intron | 25.0% |
| ! | GAGTACTTAATGAAATAGAA+TGG | + | chr5_3:50834947-50834966 | Msa0816480:intron | 25.0% |
| ! | TAGAATGGAAAATTGAGATA+AGG | + | chr5_3:50834962-50834981 | Msa0816480:intron | 25.0% |
| !! | TAAGGTTTGTTTGTGTTTAT+AGG | + | chr5_3:50834980-50834999 | Msa0816480:intron | 25.0% |
| !! | AAGGTTTGTTTGTGTTTATA+GGG | + | chr5_3:50834981-50835000 | Msa0816480:intron | 25.0% |
| ! | ACTAATTTGAAAATCTACCT+TGG | - | chr5_3:50835267-50835286 | None:intergenic | 25.0% |
| ! | TTTATCAAATTAGTCCTTGA+AGG | - | chr5_3:50835516-50835535 | None:intergenic | 25.0% |
| ACAATGTAGAATGTTGTTGT+TGG | - | chr5_3:50834123-50834142 | None:intergenic | 30.0% | |
| !! | TATTTTTGACGAGACTACTA+TGG | + | chr5_3:50834142-50834161 | Msa0816480:CDS | 30.0% |
| TCTATGATTGAAGAAGAAGA+TGG | + | chr5_3:50834194-50834213 | Msa0816480:CDS | 30.0% | |
| TAGAGTAGGAGAATTTGTAA+TGG | - | chr5_3:50834273-50834292 | None:intergenic | 30.0% | |
| TATTACAACAATCTCATGCA+AGG | + | chr5_3:50834377-50834396 | Msa0816480:CDS | 30.0% | |
| TTGCTGCAAATTATTCTCAT+TGG | - | chr5_3:50834444-50834463 | None:intergenic | 30.0% | |
| ! | ATGAGAATAATTTGCAGCAA+TGG | + | chr5_3:50834444-50834463 | Msa0816480:CDS | 30.0% |
| AAGTAACACAAATTTGTGCA+TGG | + | chr5_3:50834484-50834503 | Msa0816480:CDS | 30.0% | |
| !! | AATAGCTTTGAAACTTCAAG+TGG | + | chr5_3:50834518-50834537 | Msa0816480:CDS | 30.0% |
| AATGCAAAAGAGAAGCAAAA+TGG | + | chr5_3:50834563-50834582 | Msa0816480:CDS | 30.0% | |
| TGATAGCTTAATAAAAGAGG+CGG | + | chr5_3:50834649-50834668 | Msa0816480:CDS | 30.0% | |
| ATGACTCTAAACATCCTAAA+TGG | - | chr5_3:50834749-50834768 | None:intergenic | 30.0% | |
| ! | AGGTTTGTTTGTGTTTATAG+GGG | + | chr5_3:50834982-50835001 | Msa0816480:intron | 30.0% |
| !! | ATTCTGATGATGAATTTTGC+AGG | + | chr5_3:50835410-50835429 | Msa0816480:intron | 30.0% |
| !!! | ATGAATTTTGCAGGTTGATT+TGG | + | chr5_3:50835419-50835438 | Msa0816480:intron | 30.0% |
| TCTATATTTGTTCATGGTGT+AGG | + | chr5_3:50835589-50835608 | Msa0816480:intron | 30.0% | |
| ACAATGTAGAATGTTGTTGT+TGG | - | chr5_3:50834123-50834142 | None:intergenic | 30.0% | |
| !! | TATTTTTGACGAGACTACTA+TGG | + | chr5_3:50834142-50834161 | Msa0816480:CDS | 30.0% |
| TCTATGATTGAAGAAGAAGA+TGG | + | chr5_3:50834194-50834213 | Msa0816480:CDS | 30.0% | |
| TAGAGTAGGAGAATTTGTAA+TGG | - | chr5_3:50834273-50834292 | None:intergenic | 30.0% | |
| TATTACAACAATCTCATGCA+AGG | + | chr5_3:50834377-50834396 | Msa0816480:CDS | 30.0% | |
| TTGCTGCAAATTATTCTCAT+TGG | - | chr5_3:50834444-50834463 | None:intergenic | 30.0% | |
| ! | ATGAGAATAATTTGCAGCAA+TGG | + | chr5_3:50834444-50834463 | Msa0816480:CDS | 30.0% |
| AAGTAACACAAATTTGTGCA+TGG | + | chr5_3:50834484-50834503 | Msa0816480:CDS | 30.0% | |
| !! | AATAGCTTTGAAACTTCAAG+TGG | + | chr5_3:50834518-50834537 | Msa0816480:CDS | 30.0% |
| AATGCAAAAGAGAAGCAAAA+TGG | + | chr5_3:50834563-50834582 | Msa0816480:CDS | 30.0% | |
| TGATAGCTTAATAAAAGAGG+CGG | + | chr5_3:50834649-50834668 | Msa0816480:CDS | 30.0% | |
| ATGACTCTAAACATCCTAAA+TGG | - | chr5_3:50834749-50834768 | None:intergenic | 30.0% | |
| ! | AGGTTTGTTTGTGTTTATAG+GGG | + | chr5_3:50834982-50835001 | Msa0816480:intron | 30.0% |
| !! | ATTCTGATGATGAATTTTGC+AGG | + | chr5_3:50835410-50835429 | Msa0816480:intron | 30.0% |
| !!! | ATGAATTTTGCAGGTTGATT+TGG | + | chr5_3:50835419-50835438 | Msa0816480:intron | 30.0% |
| TCTATATTTGTTCATGGTGT+AGG | + | chr5_3:50835589-50835608 | Msa0816480:intron | 30.0% | |
| AGTAGGAGAATTTGTAATGG+CGG | - | chr5_3:50834270-50834289 | None:intergenic | 35.0% | |
| CAAAATGGTGAAAGTTCATG+TGG | + | chr5_3:50834578-50834597 | Msa0816480:CDS | 35.0% | |
| CAGTTATGTGCAATATATCG+AGG | - | chr5_3:50834807-50834826 | None:intergenic | 35.0% | |
| ! | GGTTTGTTTGTGTTTATAGG+GGG | + | chr5_3:50834983-50835002 | Msa0816480:intron | 35.0% |
| GTTTGTTTGTGTTTATAGGG+GGG | + | chr5_3:50834984-50835003 | Msa0816480:intron | 35.0% | |
| ACATAAGTCAAATCCATCCA+AGG | + | chr5_3:50835064-50835083 | Msa0816480:CDS | 35.0% | |
| ACTAATTGCTTTCTCCAACA+TGG | - | chr5_3:50835448-50835467 | None:intergenic | 35.0% | |
| ! | TGTTTTACTTGACCAATGTC+AGG | - | chr5_3:50835659-50835678 | None:intergenic | 35.0% |
| AGTAGGAGAATTTGTAATGG+CGG | - | chr5_3:50834270-50834289 | None:intergenic | 35.0% | |
| CAAAATGGTGAAAGTTCATG+TGG | + | chr5_3:50834578-50834597 | Msa0816480:CDS | 35.0% | |
| CAGTTATGTGCAATATATCG+AGG | - | chr5_3:50834807-50834826 | None:intergenic | 35.0% | |
| ! | GGTTTGTTTGTGTTTATAGG+GGG | + | chr5_3:50834983-50835002 | Msa0816480:intron | 35.0% |
| GTTTGTTTGTGTTTATAGGG+GGG | + | chr5_3:50834984-50835003 | Msa0816480:intron | 35.0% | |
| ACATAAGTCAAATCCATCCA+AGG | + | chr5_3:50835064-50835083 | Msa0816480:CDS | 35.0% | |
| ACTAATTGCTTTCTCCAACA+TGG | - | chr5_3:50835448-50835467 | None:intergenic | 35.0% | |
| ! | TGTTTTACTTGACCAATGTC+AGG | - | chr5_3:50835659-50835678 | None:intergenic | 35.0% |
| ! | GATGGTTCACAAAGCACTAA+TGG | + | chr5_3:50834212-50834231 | Msa0816480:CDS | 40.0% |
| TCTCCTACTCTATGCAGAAA+AGG | + | chr5_3:50834281-50834300 | Msa0816480:CDS | 40.0% | |
| ! | TGACCTTTTCTGCATAGAGT+AGG | - | chr5_3:50834287-50834306 | None:intergenic | 40.0% |
| ACAAATTTGTGCATGGTGCA+AGG | + | chr5_3:50834491-50834510 | Msa0816480:CDS | 40.0% | |
| GAAACTTCAAGTGGTAGCTA+TGG | + | chr5_3:50834527-50834546 | Msa0816480:CDS | 40.0% | |
| ATGGTGAAAGTTCATGTGGA+TGG | + | chr5_3:50834582-50834601 | Msa0816480:CDS | 40.0% | |
| AGAAGATCGCTTCTTCAAGA+CGG | - | chr5_3:50834687-50834706 | None:intergenic | 40.0% | |
| CTTGAAGAAGCGATCTTCTA+TGG | + | chr5_3:50834688-50834707 | Msa0816480:CDS | 40.0% | |
| TGCACATAACTGCAGTCAAA+TGG | + | chr5_3:50834815-50834834 | Msa0816480:intron | 40.0% | |
| GCACATAACTGCAGTCAAAT+GGG | + | chr5_3:50834816-50834835 | Msa0816480:intron | 40.0% | |
| GAAGAGAGAGAATAAGTGAG+AGG | + | chr5_3:50835207-50835226 | Msa0816480:CDS | 40.0% | |
| CTACAAGAACTTGTGCCAAA+CGG | + | chr5_3:50835239-50835258 | Msa0816480:CDS | 40.0% | |
| AAATCTACCTTGGAACCGTT+TGG | - | chr5_3:50835257-50835276 | None:intergenic | 40.0% | |
| !! | GGTTGATTTGGTTACCATGT+TGG | + | chr5_3:50835431-50835450 | Msa0816480:intron | 40.0% |
| GTTTCTTCAGTTGCAAGTGA+AGG | + | chr5_3:50835476-50835495 | Msa0816480:CDS | 40.0% | |
| TGAGACTTTAGCAACCTTCA+AGG | + | chr5_3:50835499-50835518 | Msa0816480:intron | 40.0% | |
| TTTGTTCATGGTGTAGGTGT+TGG | + | chr5_3:50835595-50835614 | Msa0816480:intron | 40.0% | |
| ! | TGTTGGCAGCTGATGAATTT+TGG | + | chr5_3:50835612-50835631 | Msa0816480:CDS | 40.0% |
| !! | GATGAATTTTGGCCAGTCAA+TGG | + | chr5_3:50835623-50835642 | Msa0816480:CDS | 40.0% |
| ! | GATGGTTCACAAAGCACTAA+TGG | + | chr5_3:50834212-50834231 | Msa0816480:CDS | 40.0% |
| TCTCCTACTCTATGCAGAAA+AGG | + | chr5_3:50834281-50834300 | Msa0816480:CDS | 40.0% | |
| ! | TGACCTTTTCTGCATAGAGT+AGG | - | chr5_3:50834287-50834306 | None:intergenic | 40.0% |
| ACAAATTTGTGCATGGTGCA+AGG | + | chr5_3:50834491-50834510 | Msa0816480:CDS | 40.0% | |
| GAAACTTCAAGTGGTAGCTA+TGG | + | chr5_3:50834527-50834546 | Msa0816480:CDS | 40.0% | |
| ATGGTGAAAGTTCATGTGGA+TGG | + | chr5_3:50834582-50834601 | Msa0816480:CDS | 40.0% | |
| AGAAGATCGCTTCTTCAAGA+CGG | - | chr5_3:50834687-50834706 | None:intergenic | 40.0% | |
| CTTGAAGAAGCGATCTTCTA+TGG | + | chr5_3:50834688-50834707 | Msa0816480:CDS | 40.0% | |
| TGCACATAACTGCAGTCAAA+TGG | + | chr5_3:50834815-50834834 | Msa0816480:intron | 40.0% | |
| GCACATAACTGCAGTCAAAT+GGG | + | chr5_3:50834816-50834835 | Msa0816480:intron | 40.0% | |
| GAAGAGAGAGAATAAGTGAG+AGG | + | chr5_3:50835207-50835226 | Msa0816480:CDS | 40.0% | |
| CTACAAGAACTTGTGCCAAA+CGG | + | chr5_3:50835239-50835258 | Msa0816480:CDS | 40.0% | |
| AAATCTACCTTGGAACCGTT+TGG | - | chr5_3:50835257-50835276 | None:intergenic | 40.0% | |
| !! | GGTTGATTTGGTTACCATGT+TGG | + | chr5_3:50835431-50835450 | Msa0816480:intron | 40.0% |
| GTTTCTTCAGTTGCAAGTGA+AGG | + | chr5_3:50835476-50835495 | Msa0816480:CDS | 40.0% | |
| TGAGACTTTAGCAACCTTCA+AGG | + | chr5_3:50835499-50835518 | Msa0816480:intron | 40.0% | |
| TTTGTTCATGGTGTAGGTGT+TGG | + | chr5_3:50835595-50835614 | Msa0816480:intron | 40.0% | |
| ! | TGTTGGCAGCTGATGAATTT+TGG | + | chr5_3:50835612-50835631 | Msa0816480:CDS | 40.0% |
| !! | GATGAATTTTGGCCAGTCAA+TGG | + | chr5_3:50835623-50835642 | Msa0816480:CDS | 40.0% |
| ! | TGCTTAGCTTTCAACAGAGC+TGG | + | chr5_3:50834411-50834430 | Msa0816480:CDS | 45.0% |
| TAGCTTTCAACAGAGCTGGA+TGG | + | chr5_3:50834415-50834434 | Msa0816480:CDS | 45.0% | |
| TCGTCATCACAAGGGACATT+TGG | - | chr5_3:50834620-50834639 | None:intergenic | 45.0% | |
| AACTGCAGTCAAATGGGTCA+CGG | + | chr5_3:50834822-50834841 | Msa0816480:intron | 45.0% | |
| ! | TGATGTTTCTGTCCTGATCG+CGG | + | chr5_3:50834860-50834879 | Msa0816480:intron | 45.0% |
| TTCTTACTTGCAGCTGTGCA+TGG | - | chr5_3:50835038-50835057 | None:intergenic | 45.0% | |
| ! | ACACTTTGAGGATCCTTGGA+TGG | - | chr5_3:50835080-50835099 | None:intergenic | 45.0% |
| ! | AGCAACACTTTGAGGATCCT+TGG | - | chr5_3:50835084-50835103 | None:intergenic | 45.0% |
| ! | CTTGGGTTTGAAGCAAACCT+TGG | - | chr5_3:50835108-50835127 | None:intergenic | 45.0% |
| CGTTTGGCACAAGTTCTTGT+AGG | - | chr5_3:50835241-50835260 | None:intergenic | 45.0% | |
| !! | GAATTTTGGCCAGTCAATGG+TGG | + | chr5_3:50835626-50835645 | Msa0816480:CDS | 45.0% |
| ! | TGCTTAGCTTTCAACAGAGC+TGG | + | chr5_3:50834411-50834430 | Msa0816480:CDS | 45.0% |
| TAGCTTTCAACAGAGCTGGA+TGG | + | chr5_3:50834415-50834434 | Msa0816480:CDS | 45.0% | |
| TCGTCATCACAAGGGACATT+TGG | - | chr5_3:50834620-50834639 | None:intergenic | 45.0% | |
| AACTGCAGTCAAATGGGTCA+CGG | + | chr5_3:50834822-50834841 | Msa0816480:intron | 45.0% | |
| ! | TGATGTTTCTGTCCTGATCG+CGG | + | chr5_3:50834860-50834879 | Msa0816480:intron | 45.0% |
| TTCTTACTTGCAGCTGTGCA+TGG | - | chr5_3:50835038-50835057 | None:intergenic | 45.0% | |
| ! | ACACTTTGAGGATCCTTGGA+TGG | - | chr5_3:50835080-50835099 | None:intergenic | 45.0% |
| ! | AGCAACACTTTGAGGATCCT+TGG | - | chr5_3:50835084-50835103 | None:intergenic | 45.0% |
| ! | CTTGGGTTTGAAGCAAACCT+TGG | - | chr5_3:50835108-50835127 | None:intergenic | 45.0% |
| CGTTTGGCACAAGTTCTTGT+AGG | - | chr5_3:50835241-50835260 | None:intergenic | 45.0% | |
| !! | GAATTTTGGCCAGTCAATGG+TGG | + | chr5_3:50835626-50835645 | Msa0816480:CDS | 45.0% |
| !!! | TGATAAATTATTAATATTTT+CGG | + | chr5_3:50835529-50835548 | Msa0816480:intron | 5.0% |
| !!! | TGATAAATTATTAATATTTT+CGG | + | chr5_3:50835529-50835548 | Msa0816480:intron | 5.0% |
| CATCGTCGTCGTCATCACAA+GGG | - | chr5_3:50834628-50834647 | None:intergenic | 50.0% | |
| TCATCGTCGTCGTCATCACA+AGG | - | chr5_3:50834629-50834648 | None:intergenic | 50.0% | |
| !! | CATGGCTTCTTGGCATTGGT+AGG | - | chr5_3:50835020-50835039 | None:intergenic | 50.0% |
| TGTGCATGGCTTCTTGGCAT+TGG | - | chr5_3:50835024-50835043 | None:intergenic | 50.0% | |
| !! | TCCTCAAAGTGTTGCTGCCA+AGG | + | chr5_3:50835088-50835107 | Msa0816480:CDS | 50.0% |
| ACCTTGGCAGCAACACTTTG+AGG | - | chr5_3:50835092-50835111 | None:intergenic | 50.0% | |
| ACTTGTGCCAAACGGTTCCA+AGG | + | chr5_3:50835247-50835266 | Msa0816480:CDS | 50.0% | |
| ! | GGAGCTTTTCCACCATTGAC+TGG | - | chr5_3:50835638-50835657 | None:intergenic | 50.0% |
| GGTGGAAAAGCTCCTGACAT+TGG | + | chr5_3:50835644-50835663 | Msa0816480:CDS | 50.0% | |
| CATCGTCGTCGTCATCACAA+GGG | - | chr5_3:50834628-50834647 | None:intergenic | 50.0% | |
| TCATCGTCGTCGTCATCACA+AGG | - | chr5_3:50834629-50834648 | None:intergenic | 50.0% | |
| !! | CATGGCTTCTTGGCATTGGT+AGG | - | chr5_3:50835020-50835039 | None:intergenic | 50.0% |
| TGTGCATGGCTTCTTGGCAT+TGG | - | chr5_3:50835024-50835043 | None:intergenic | 50.0% | |
| !! | TCCTCAAAGTGTTGCTGCCA+AGG | + | chr5_3:50835088-50835107 | Msa0816480:CDS | 50.0% |
| ACCTTGGCAGCAACACTTTG+AGG | - | chr5_3:50835092-50835111 | None:intergenic | 50.0% | |
| ACTTGTGCCAAACGGTTCCA+AGG | + | chr5_3:50835247-50835266 | Msa0816480:CDS | 50.0% | |
| ! | GGAGCTTTTCCACCATTGAC+TGG | - | chr5_3:50835638-50835657 | None:intergenic | 50.0% |
| GGTGGAAAAGCTCCTGACAT+TGG | + | chr5_3:50835644-50835663 | Msa0816480:CDS | 50.0% | |
| AACGATCTGCAACCGCGATC+AGG | - | chr5_3:50834875-50834894 | None:intergenic | 55.0% | |
| TGCAGCTGTGCATGGCTTCT+TGG | - | chr5_3:50835030-50835049 | None:intergenic | 55.0% | |
| AACGATCTGCAACCGCGATC+AGG | - | chr5_3:50834875-50834894 | None:intergenic | 55.0% | |
| TGCAGCTGTGCATGGCTTCT+TGG | - | chr5_3:50835030-50835049 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 50834110 | 50835712 | 50834110 | ID=Msa0816480;Name=Msa0816480 |
| chr5_3 | mRNA | 50834110 | 50835712 | 50834110 | ID=Msa0816480-mRNA-1;Parent=Msa0816480;Name=Msa0816480-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0|0|1|1|1|5|0|313 |
| chr5_3 | exon | 50834110 | 50834709 | 50834110 | ID=Msa0816480-mRNA-1:exon:15238;Parent=Msa0816480-mRNA-1 |
| chr5_3 | exon | 50835002 | 50835109 | 50835002 | ID=Msa0816480-mRNA-1:exon:15239;Parent=Msa0816480-mRNA-1 |
| chr5_3 | exon | 50835203 | 50835268 | 50835203 | ID=Msa0816480-mRNA-1:exon:15240;Parent=Msa0816480-mRNA-1 |
| chr5_3 | exon | 50835432 | 50835497 | 50835432 | ID=Msa0816480-mRNA-1:exon:15241;Parent=Msa0816480-mRNA-1 |
| chr5_3 | exon | 50835611 | 50835712 | 50835611 | ID=Msa0816480-mRNA-1:exon:15242;Parent=Msa0816480-mRNA-1 |
| chr5_3 | CDS | 50834110 | 50834709 | 50834110 | ID=Msa0816480-mRNA-1:cds;Parent=Msa0816480-mRNA-1 |
| chr5_3 | CDS | 50835002 | 50835109 | 50835002 | ID=Msa0816480-mRNA-1:cds;Parent=Msa0816480-mRNA-1 |
| chr5_3 | CDS | 50835203 | 50835268 | 50835203 | ID=Msa0816480-mRNA-1:cds;Parent=Msa0816480-mRNA-1 |
| chr5_3 | CDS | 50835432 | 50835497 | 50835432 | ID=Msa0816480-mRNA-1:cds;Parent=Msa0816480-mRNA-1 |
| chr5_3 | CDS | 50835611 | 50835712 | 50835611 | ID=Msa0816480-mRNA-1:cds;Parent=Msa0816480-mRNA-1 |
| Gene Sequence |
| Protein sequence |
