Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0856740 | XP_003616375.2 | 97.106 | 311 | 9 | 0 | 1 | 311 | 1 | 311 | 0.0 | 628 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0856740 | sp|Q9FJ00|RSL1_ARATH | 53.968 | 189 | 65 | 5 | 130 | 311 | 121 | 294 | 1.75e-53 | 180 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0856740 | G7K1Y5 | 97.106 | 311 | 9 | 0 | 1 | 311 | 1 | 311 | 0.0 | 628 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0856740 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0605400 | Msa0856740 | 0.802238 | 6.168289e-49 | -8.615850e-47 |
| Msa0643190 | Msa0856740 | 0.818016 | 2.442459e-52 | -8.615850e-47 |
| Msa0727480 | Msa0856740 | 0.800814 | 1.207883e-48 | -8.615850e-47 |
| Msa0768670 | Msa0856740 | 0.825806 | 3.835049e-54 | -8.615850e-47 |
| Msa0768720 | Msa0856740 | 0.802234 | 6.181111e-49 | -8.615850e-47 |
| Msa0777070 | Msa0856740 | 0.816037 | 6.797982e-52 | -8.615850e-47 |
| Msa0777250 | Msa0856740 | 0.802755 | 4.826027e-49 | -8.615850e-47 |
| Msa0814230 | Msa0856740 | 0.819529 | 1.106993e-52 | -8.615850e-47 |
| Msa0816480 | Msa0856740 | 0.818454 | 1.944102e-52 | -8.615850e-47 |
| Msa0150910 | Msa0856740 | 0.815893 | 7.318581e-52 | -8.615850e-47 |
| Msa0150920 | Msa0856740 | 0.815273 | 1.006050e-51 | -8.615850e-47 |
| Msa0163340 | Msa0856740 | 0.802676 | 5.010810e-49 | -8.615850e-47 |
| Msa0856740 | Msa0861730 | 0.816551 | 5.217792e-52 | -8.615850e-47 |
| Msa0856740 | Msa0913550 | 0.835860 | 1.312446e-56 | -8.615850e-47 |
| Msa0856740 | Msa0921180 | 0.805564 | 1.255849e-49 | -8.615850e-47 |
| Msa0856740 | Msa0951150 | 0.823747 | 1.172889e-53 | -8.615850e-47 |
| Msa0856740 | Msa0987640 | 0.832456 | 9.356306e-56 | -8.615850e-47 |
| Msa0856740 | Msa1018590 | 0.818167 | 2.257792e-52 | -8.615850e-47 |
| Msa0856740 | Msa1021620 | 0.832166 | 1.103977e-55 | -8.615850e-47 |
| Msa0856740 | Msa1149020 | 0.814791 | 1.286988e-51 | -8.615850e-47 |
| Msa0856740 | Msa1323030 | 0.815875 | 7.389915e-52 | -8.615850e-47 |
| Msa0856740 | Msa1335100 | 0.823963 | 1.043343e-53 | -8.615850e-47 |
| Msa0856740 | Msa1431160 | 0.809394 | 1.933535e-50 | -8.615850e-47 |
| Msa0856740 | Msa1445900 | 0.809332 | 1.993499e-50 | -8.615850e-47 |
| Msa0856740 | Msa1459610 | 0.812513 | 4.083279e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0856740 | MtrunA17_Chr5g0435021 | 97.106 | 311 | 9 | 0 | 1 | 311 | 1 | 311 | 0.0 | 628 |
| Msa0856740 | MtrunA17_Chr5g0393721 | 46.957 | 115 | 47 | 2 | 172 | 286 | 192 | 292 | 1.98e-25 | 103 |
| Msa0856740 | MtrunA17_Chr1g0207311 | 50.000 | 94 | 41 | 2 | 197 | 286 | 173 | 264 | 1.65e-24 | 100 |
| Msa0856740 | MtrunA17_Chr1g0207301 | 70.000 | 60 | 18 | 0 | 227 | 286 | 297 | 356 | 3.06e-23 | 98.6 |
| Msa0856740 | MtrunA17_Chr3g0134741 | 58.571 | 70 | 29 | 0 | 217 | 286 | 228 | 297 | 1.21e-22 | 95.9 |
| Msa0856740 | MtrunA17_Chr1g0152651 | 62.903 | 62 | 23 | 0 | 225 | 286 | 281 | 342 | 2.02e-22 | 95.9 |
| Msa0856740 | MtrunA17_Chr8g0384141 | 50.000 | 80 | 33 | 1 | 201 | 280 | 104 | 176 | 2.91e-19 | 85.5 |
| Msa0856740 | MtrunA17_Chr3g0134001 | 62.500 | 56 | 21 | 0 | 225 | 280 | 178 | 233 | 2.10e-18 | 83.2 |
| Msa0856740 | MtrunA17_Chr7g0243041 | 66.038 | 53 | 18 | 0 | 225 | 277 | 33 | 85 | 8.44e-18 | 79.0 |
| Msa0856740 | MtrunA17_Chr4g0074161 | 41.509 | 106 | 58 | 1 | 180 | 281 | 164 | 269 | 4.00e-17 | 81.3 |
| Msa0856740 | MtrunA17_Chr1g0190731 | 50.769 | 65 | 32 | 0 | 217 | 281 | 192 | 256 | 1.80e-14 | 73.2 |
| Msa0856740 | MtrunA17_Chr5g0402161 | 55.696 | 79 | 33 | 1 | 202 | 280 | 123 | 199 | 4.45e-11 | 62.0 |
| Msa0856740 | MtrunA17_Chr2g0311101 | 43.421 | 76 | 43 | 0 | 205 | 280 | 156 | 231 | 6.52e-11 | 62.4 |
| Msa0856740 | MtrunA17_Chr1g0153241 | 37.805 | 82 | 46 | 1 | 199 | 280 | 71 | 147 | 9.26e-11 | 61.2 |
| Msa0856740 | MtrunA17_Chr1g0193321 | 49.020 | 51 | 26 | 0 | 231 | 281 | 475 | 525 | 9.78e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0856740 | AT5G37800.1 | 53.968 | 189 | 65 | 5 | 130 | 311 | 121 | 294 | 1.78e-54 | 180 |
| Msa0856740 | AT1G66470.1 | 63.265 | 147 | 47 | 2 | 163 | 309 | 147 | 286 | 1.24e-51 | 172 |
| Msa0856740 | AT2G14760.1 | 60.000 | 70 | 28 | 0 | 217 | 286 | 236 | 305 | 4.42e-24 | 100 |
| Msa0856740 | AT4G33880.1 | 60.000 | 70 | 28 | 0 | 217 | 286 | 265 | 334 | 8.50e-24 | 100 |
| Msa0856740 | AT1G27740.1 | 54.430 | 79 | 36 | 0 | 208 | 286 | 157 | 235 | 1.70e-23 | 97.4 |
| Msa0856740 | AT5G43175.1 | 58.442 | 77 | 30 | 1 | 212 | 286 | 124 | 200 | 1.83e-23 | 96.7 |
| Msa0856740 | AT2G14760.3 | 50.602 | 83 | 28 | 1 | 217 | 286 | 236 | 318 | 1.30e-20 | 90.9 |
| Msa0856740 | AT5G01305.1 | 57.576 | 66 | 28 | 0 | 212 | 277 | 31 | 96 | 5.17e-20 | 85.9 |
| Msa0856740 | AT2G24260.2 | 50.000 | 86 | 39 | 1 | 217 | 302 | 34 | 115 | 2.18e-19 | 85.9 |
| Msa0856740 | AT2G24260.1 | 50.000 | 86 | 39 | 1 | 217 | 302 | 137 | 218 | 1.26e-18 | 85.5 |
| Msa0856740 | AT4G30980.1 | 40.678 | 118 | 58 | 3 | 184 | 301 | 104 | 209 | 2.03e-18 | 84.3 |
| Msa0856740 | AT4G30980.2 | 40.678 | 118 | 58 | 3 | 184 | 301 | 152 | 257 | 2.73e-18 | 84.7 |
| Msa0856740 | AT4G00120.1 | 43.820 | 89 | 48 | 2 | 192 | 280 | 88 | 174 | 9.56e-17 | 77.8 |
| Msa0856740 | AT5G58010.1 | 50.000 | 72 | 36 | 0 | 210 | 281 | 91 | 162 | 1.04e-16 | 79.3 |
| Msa0856740 | AT3G21330.1 | 58.929 | 56 | 23 | 0 | 225 | 280 | 276 | 331 | 7.33e-16 | 77.8 |
| Msa0856740 | AT3G50330.1 | 64.179 | 67 | 22 | 1 | 225 | 291 | 126 | 190 | 1.51e-11 | 63.5 |
| Msa0856740 | AT5G09750.1 | 51.250 | 80 | 32 | 1 | 201 | 280 | 109 | 181 | 4.30e-11 | 62.0 |
Find 43 sgRNAs with CRISPR-Local
Find 168 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCAGCTGTGCATGGCTTCT+TGG | 0.232597 | 5_4:+51743984 | None:intergenic |
| TGTTGGCAGCTGATGAATTT+TGG | 0.271276 | 5_4:-51743393 | Msa0856740:CDS |
| TTGCTGCAAATTATTCTCAT+TGG | 0.332794 | 5_4:+51744563 | None:intergenic |
| CATGGCTTCTTGGCATTGGC+AGG | 0.349622 | 5_4:+51743994 | None:intergenic |
| CTTGAAGAAGCGATCTTCTA+TGG | 0.360051 | 5_4:-51744316 | Msa0856740:intron |
| GATGGTTCACAAAGCACTAA+TGG | 0.373871 | 5_4:-51744786 | Msa0856740:CDS |
| CATTTGGCACAAGTTCTTGT+AGG | 0.374925 | 5_4:+51743773 | None:intergenic |
| AAATTTACCTTGGAACCATT+TGG | 0.389100 | 5_4:+51743757 | None:intergenic |
| AATGCAAAAGAGAAGCAAAA+TGG | 0.391258 | 5_4:-51744441 | Msa0856740:CDS |
| TGTGCATGGCTTCTTGGCAT+TGG | 0.393772 | 5_4:+51743990 | None:intergenic |
| TTCTTACTTGCAGCTGTGCA+TGG | 0.415931 | 5_4:+51743976 | None:intergenic |
| TGCTTAGCTTTCAACAGAGC+TGG | 0.417572 | 5_4:-51744593 | Msa0856740:CDS |
| ACCTTGGCAGCAACACTTTG+AGG | 0.436246 | 5_4:+51743922 | None:intergenic |
| TCGTCATCACAAGGGACATT+TGG | 0.448252 | 5_4:+51744387 | None:intergenic |
| AGCAACACTTTGAGGATCCT+TGG | 0.463727 | 5_4:+51743930 | None:intergenic |
| TCCTCAAAGTGTTGCTGCCA+AGG | 0.467735 | 5_4:-51743923 | Msa0856740:intron |
| CTACAAGAACTTGTGCCAAA+TGG | 0.480564 | 5_4:-51743772 | Msa0856740:CDS |
| GAAACTTCAAGTGGTAGCTA+TGG | 0.482106 | 5_4:-51744477 | Msa0856740:CDS |
| ATGAGAATAATTTGCAGCAA+TGG | 0.492330 | 5_4:-51744560 | Msa0856740:CDS |
| ACAATGTAGAATGTTGTTGT+TGG | 0.495112 | 5_4:+51744878 | None:intergenic |
| TCTCCTACTCTATGCAGAAA+AGG | 0.510749 | 5_4:-51744723 | Msa0856740:CDS |
| GAGTCTTTGATTAATTTCAA+AGG | 0.522051 | 5_4:-51744660 | Msa0856740:CDS |
| GGTTGATTTGGTTACCATGT+TGG | 0.524353 | 5_4:-51743621 | Msa0856740:CDS |
| ACAAATTTGTGCATGGTGCA+AGG | 0.524955 | 5_4:-51744513 | Msa0856740:CDS |
| TCATCGTCGTCGTCATCACA+AGG | 0.527111 | 5_4:+51744378 | None:intergenic |
| ACACTTTGAGGATCCTTGGA+TGG | 0.541193 | 5_4:+51743934 | None:intergenic |
| GTTTCTTCAGTTGCAAGTGA+AGG | 0.554782 | 5_4:-51743576 | Msa0856740:intron |
| GGTGGAAAAGCTCCTGACAT+TGG | 0.579618 | 5_4:-51743361 | Msa0856740:CDS |
| TAGCTTTCAACAGAGCTGGA+TGG | 0.582750 | 5_4:-51744589 | Msa0856740:CDS |
| AGAAGATCGCTTCTTCAAGA+CGG | 0.585959 | 5_4:+51744320 | None:intergenic |
| CAAAATGGTGAAAGTTCATG+TGG | 0.590862 | 5_4:-51744426 | Msa0856740:CDS |
| ACTAATTGCTTTCTCCAACA+TGG | 0.596287 | 5_4:+51743607 | None:intergenic |
| AATAGCTTTGAAACTTCAAG+TGG | 0.597044 | 5_4:-51744486 | Msa0856740:CDS |
| ACTTGTGCCAAATGGTTCCA+AGG | 0.597324 | 5_4:-51743764 | Msa0856740:intron |
| TAGAGTAGGAGAATTTGTAA+TGG | 0.598886 | 5_4:+51744734 | None:intergenic |
| AAGTAACACAAATTTGTGCA+TGG | 0.601950 | 5_4:-51744520 | Msa0856740:CDS |
| TGATAGCTTAATAAAAGAGT+CGG | 0.604203 | 5_4:-51744355 | Msa0856740:CDS |
| ACATAAGTCAAATCCATCCA+AGG | 0.604373 | 5_4:-51743947 | Msa0856740:CDS |
| TCTATGATTGAAGAAGAAGA+TGG | 0.607243 | 5_4:-51744804 | Msa0856740:CDS |
| ATGGTGAAAGTTCATGTGGA+TGG | 0.618317 | 5_4:-51744422 | Msa0856740:CDS |
| GAAGAGAGAGAATAAGTGAG+AGG | 0.626364 | 5_4:-51743804 | Msa0856740:CDS |
| TATTACAACAATCTCATGCA+AGG | 0.641770 | 5_4:-51744627 | Msa0856740:CDS |
| CATCGTCGTCGTCATCACAA+GGG | 0.710822 | 5_4:+51744379 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGATAAATTAAAAATTGTTT+AGG | - | chr5_4:51744718-51744737 | Msa0856740:CDS | 10.0% |
| !! | GATAAATTAAAAATTGTTTA+GGG | - | chr5_4:51744719-51744738 | Msa0856740:CDS | 10.0% |
| !! | TGATAAATTAAAAATTGTTT+AGG | - | chr5_4:51744718-51744737 | Msa0856740:CDS | 10.0% |
| !! | GATAAATTAAAAATTGTTTA+GGG | - | chr5_4:51744719-51744738 | Msa0856740:CDS | 10.0% |
| !!! | ACTAGTTATTATATTTTTCT+TGG | - | chr5_4:51744742-51744761 | Msa0856740:CDS | 15.0% |
| !!! | TTTTGTTATATATTTGTTCA+TGG | - | chr5_4:51744781-51744800 | Msa0856740:CDS | 15.0% |
| !!! | ACTAGTTATTATATTTTTCT+TGG | - | chr5_4:51744742-51744761 | Msa0856740:CDS | 15.0% |
| !!! | TTTTGTTATATATTTGTTCA+TGG | - | chr5_4:51744781-51744800 | Msa0856740:CDS | 15.0% |
| !!! | TAGAGTCATTATTTTATATC+AGG | - | chr5_4:51743959-51743978 | Msa0856740:CDS | 20.0% |
| !! | AGATAAGATTTGTGTTTATA+GGG | - | chr5_4:51744173-51744192 | Msa0856740:intron | 20.0% |
| !! | ATCAAAACATGATATAACTT+GGG | + | chr5_4:51744317-51744336 | None:intergenic | 20.0% |
| !! | AATCAAAACATGATATAACT+TGG | + | chr5_4:51744318-51744337 | None:intergenic | 20.0% |
| !! | ACTAATTTGAAAATTTACCT+TGG | + | chr5_4:51744459-51744478 | None:intergenic | 20.0% |
| !! | GTAAAAATTTACAAAGACTT+TGG | + | chr5_4:51744523-51744542 | None:intergenic | 20.0% |
| !!! | TAGAGTCATTATTTTATATC+AGG | - | chr5_4:51743959-51743978 | Msa0856740:CDS | 20.0% |
| !! | AGATAAGATTTGTGTTTATA+GGG | - | chr5_4:51744173-51744192 | Msa0856740:intron | 20.0% |
| !! | ATCAAAACATGATATAACTT+GGG | + | chr5_4:51744317-51744336 | None:intergenic | 20.0% |
| !! | AATCAAAACATGATATAACT+TGG | + | chr5_4:51744318-51744337 | None:intergenic | 20.0% |
| !! | ACTAATTTGAAAATTTACCT+TGG | + | chr5_4:51744459-51744478 | None:intergenic | 20.0% |
| !! | GTAAAAATTTACAAAGACTT+TGG | + | chr5_4:51744523-51744542 | None:intergenic | 20.0% |
| ! | GAGTCTTTGATTAATTTCAA+AGG | - | chr5_4:51743543-51743562 | Msa0856740:intron | 25.0% |
| !!! | CACAAATTTGTGTTACTTTT+AGG | + | chr5_4:51743681-51743700 | None:intergenic | 25.0% |
| ! | TGATAGCTTAATAAAAGAGT+CGG | - | chr5_4:51743848-51743867 | Msa0856740:intron | 25.0% |
| ! | ATGACTCTAAACATCATAAA+TGG | + | chr5_4:51743948-51743967 | None:intergenic | 25.0% |
| ! | GAGATAAGATTTGTGTTTAT+AGG | - | chr5_4:51744172-51744191 | Msa0856740:intron | 25.0% |
| ! | GATAAGATTTGTGTTTATAG+GGG | - | chr5_4:51744174-51744193 | Msa0856740:intron | 25.0% |
| ! | ATAAGATTTGTGTTTATAGG+GGG | - | chr5_4:51744175-51744194 | Msa0856740:intron | 25.0% |
| ! | ATGAGAGAAAATGAAAGTTT+AGG | - | chr5_4:51744687-51744706 | Msa0856740:CDS | 25.0% |
| ! | TGAGAGAAAATGAAAGTTTA+GGG | - | chr5_4:51744688-51744707 | Msa0856740:CDS | 25.0% |
| ! | TATATATTTGTTCATGGTGT+AGG | - | chr5_4:51744787-51744806 | Msa0856740:CDS | 25.0% |
| ! | GAGTCTTTGATTAATTTCAA+AGG | - | chr5_4:51743543-51743562 | Msa0856740:intron | 25.0% |
| !!! | CACAAATTTGTGTTACTTTT+AGG | + | chr5_4:51743681-51743700 | None:intergenic | 25.0% |
| ! | TGATAGCTTAATAAAAGAGT+CGG | - | chr5_4:51743848-51743867 | Msa0856740:intron | 25.0% |
| ! | ATGACTCTAAACATCATAAA+TGG | + | chr5_4:51743948-51743967 | None:intergenic | 25.0% |
| ! | GAGATAAGATTTGTGTTTAT+AGG | - | chr5_4:51744172-51744191 | Msa0856740:intron | 25.0% |
| ! | GATAAGATTTGTGTTTATAG+GGG | - | chr5_4:51744174-51744193 | Msa0856740:intron | 25.0% |
| ! | ATAAGATTTGTGTTTATAGG+GGG | - | chr5_4:51744175-51744194 | Msa0856740:intron | 25.0% |
| ! | ATGAGAGAAAATGAAAGTTT+AGG | - | chr5_4:51744687-51744706 | Msa0856740:CDS | 25.0% |
| ! | TGAGAGAAAATGAAAGTTTA+GGG | - | chr5_4:51744688-51744707 | Msa0856740:CDS | 25.0% |
| ! | TATATATTTGTTCATGGTGT+AGG | - | chr5_4:51744787-51744806 | Msa0856740:CDS | 25.0% |
| ACAATGTAGAATGTTGTTGT+TGG | + | chr5_4:51743328-51743347 | None:intergenic | 30.0% | |
| !! | TATTTTTGACGAGACTACTA+TGG | - | chr5_4:51743347-51743366 | Msa0856740:CDS | 30.0% |
| TCTATGATTGAAGAAGAAGA+TGG | - | chr5_4:51743399-51743418 | Msa0856740:intron | 30.0% | |
| TAGAGTAGGAGAATTTGTAA+TGG | + | chr5_4:51743472-51743491 | None:intergenic | 30.0% | |
| TATTACAACAATCTCATGCA+AGG | - | chr5_4:51743576-51743595 | Msa0856740:intron | 30.0% | |
| TTGCTGCAAATTATTCTCAT+TGG | + | chr5_4:51743643-51743662 | None:intergenic | 30.0% | |
| ! | ATGAGAATAATTTGCAGCAA+TGG | - | chr5_4:51743643-51743662 | Msa0856740:intron | 30.0% |
| AAGTAACACAAATTTGTGCA+TGG | - | chr5_4:51743683-51743702 | Msa0856740:intron | 30.0% | |
| !! | AATAGCTTTGAAACTTCAAG+TGG | - | chr5_4:51743717-51743736 | Msa0856740:intron | 30.0% |
| AATGCAAAAGAGAAGCAAAA+TGG | - | chr5_4:51743762-51743781 | Msa0856740:intron | 30.0% | |
| GAGAACTTGATGAAATAGAA+TGG | - | chr5_4:51744143-51744162 | Msa0856740:intron | 30.0% | |
| TAAGATTTGTGTTTATAGGG+GGG | - | chr5_4:51744176-51744195 | Msa0856740:intron | 30.0% | |
| AAATTTACCTTGGAACCATT+TGG | + | chr5_4:51744449-51744468 | None:intergenic | 30.0% | |
| AAGAAAGCAACATAACTTTG+AGG | + | chr5_4:51744482-51744501 | None:intergenic | 30.0% | |
| AATTTACAAAGACTTTGGCT+TGG | + | chr5_4:51744518-51744537 | None:intergenic | 30.0% | |
| !! | ATTCTGATGATGAATTTTGC+AGG | - | chr5_4:51744561-51744580 | Msa0856740:CDS | 30.0% |
| !!! | ATGAATTTTGCAGGTTGATT+TGG | - | chr5_4:51744570-51744589 | Msa0856740:CDS | 30.0% |
| ACAATGTAGAATGTTGTTGT+TGG | + | chr5_4:51743328-51743347 | None:intergenic | 30.0% | |
| !! | TATTTTTGACGAGACTACTA+TGG | - | chr5_4:51743347-51743366 | Msa0856740:CDS | 30.0% |
| TCTATGATTGAAGAAGAAGA+TGG | - | chr5_4:51743399-51743418 | Msa0856740:intron | 30.0% | |
| TAGAGTAGGAGAATTTGTAA+TGG | + | chr5_4:51743472-51743491 | None:intergenic | 30.0% | |
| TATTACAACAATCTCATGCA+AGG | - | chr5_4:51743576-51743595 | Msa0856740:intron | 30.0% | |
| TTGCTGCAAATTATTCTCAT+TGG | + | chr5_4:51743643-51743662 | None:intergenic | 30.0% | |
| ! | ATGAGAATAATTTGCAGCAA+TGG | - | chr5_4:51743643-51743662 | Msa0856740:intron | 30.0% |
| AAGTAACACAAATTTGTGCA+TGG | - | chr5_4:51743683-51743702 | Msa0856740:intron | 30.0% | |
| !! | AATAGCTTTGAAACTTCAAG+TGG | - | chr5_4:51743717-51743736 | Msa0856740:intron | 30.0% |
| AATGCAAAAGAGAAGCAAAA+TGG | - | chr5_4:51743762-51743781 | Msa0856740:intron | 30.0% | |
| GAGAACTTGATGAAATAGAA+TGG | - | chr5_4:51744143-51744162 | Msa0856740:intron | 30.0% | |
| TAAGATTTGTGTTTATAGGG+GGG | - | chr5_4:51744176-51744195 | Msa0856740:intron | 30.0% | |
| AAATTTACCTTGGAACCATT+TGG | + | chr5_4:51744449-51744468 | None:intergenic | 30.0% | |
| AAGAAAGCAACATAACTTTG+AGG | + | chr5_4:51744482-51744501 | None:intergenic | 30.0% | |
| AATTTACAAAGACTTTGGCT+TGG | + | chr5_4:51744518-51744537 | None:intergenic | 30.0% | |
| !! | ATTCTGATGATGAATTTTGC+AGG | - | chr5_4:51744561-51744580 | Msa0856740:CDS | 30.0% |
| !!! | ATGAATTTTGCAGGTTGATT+TGG | - | chr5_4:51744570-51744589 | Msa0856740:CDS | 30.0% |
| CAAAATGGTGAAAGTTCATG+TGG | - | chr5_4:51743777-51743796 | Msa0856740:CDS | 35.0% | |
| CGGTTATGTGCAATATATCA+AGG | + | chr5_4:51744006-51744025 | None:intergenic | 35.0% | |
| TGATATATTGCACATAACCG+CGG | - | chr5_4:51744006-51744025 | Msa0856740:CDS | 35.0% | |
| AAGATTTGTGTTTATAGGGG+GGG | - | chr5_4:51744177-51744196 | Msa0856740:intron | 35.0% | |
| ACATAAGTCAAATCCATCCA+AGG | - | chr5_4:51744256-51744275 | Msa0856740:intron | 35.0% | |
| ACTAATTGCTTTCTCCAACA+TGG | + | chr5_4:51744599-51744618 | None:intergenic | 35.0% | |
| ! | TGTTTTACTTGACCAATGTC+AGG | + | chr5_4:51744857-51744876 | None:intergenic | 35.0% |
| CAAAATGGTGAAAGTTCATG+TGG | - | chr5_4:51743777-51743796 | Msa0856740:CDS | 35.0% | |
| CGGTTATGTGCAATATATCA+AGG | + | chr5_4:51744006-51744025 | None:intergenic | 35.0% | |
| TGATATATTGCACATAACCG+CGG | - | chr5_4:51744006-51744025 | Msa0856740:CDS | 35.0% | |
| AAGATTTGTGTTTATAGGGG+GGG | - | chr5_4:51744177-51744196 | Msa0856740:intron | 35.0% | |
| ACATAAGTCAAATCCATCCA+AGG | - | chr5_4:51744256-51744275 | Msa0856740:intron | 35.0% | |
| ACTAATTGCTTTCTCCAACA+TGG | + | chr5_4:51744599-51744618 | None:intergenic | 35.0% | |
| ! | TGTTTTACTTGACCAATGTC+AGG | + | chr5_4:51744857-51744876 | None:intergenic | 35.0% |
| ! | GATGGTTCACAAAGCACTAA+TGG | - | chr5_4:51743417-51743436 | Msa0856740:intron | 40.0% |
| TCTCCTACTCTATGCAGAAA+AGG | - | chr5_4:51743480-51743499 | Msa0856740:intron | 40.0% | |
| ! | TGACCTTTTCTGCATAGAGT+AGG | + | chr5_4:51743486-51743505 | None:intergenic | 40.0% |
| ACAAATTTGTGCATGGTGCA+AGG | - | chr5_4:51743690-51743709 | Msa0856740:intron | 40.0% | |
| GAAACTTCAAGTGGTAGCTA+TGG | - | chr5_4:51743726-51743745 | Msa0856740:intron | 40.0% | |
| ATGGTGAAAGTTCATGTGGA+TGG | - | chr5_4:51743781-51743800 | Msa0856740:CDS | 40.0% | |
| AGAAGATCGCTTCTTCAAGA+CGG | + | chr5_4:51743886-51743905 | None:intergenic | 40.0% | |
| CTTGAAGAAGCGATCTTCTA+TGG | - | chr5_4:51743887-51743906 | Msa0856740:intron | 40.0% | |
| GAAGAGAGAGAATAAGTGAG+AGG | - | chr5_4:51744399-51744418 | Msa0856740:CDS | 40.0% | |
| CATTTGGCACAAGTTCTTGT+AGG | + | chr5_4:51744433-51744452 | None:intergenic | 40.0% | |
| CTACAAGAACTTGTGCCAAA+TGG | - | chr5_4:51744431-51744450 | Msa0856740:CDS | 40.0% | |
| !! | GGTTGATTTGGTTACCATGT+TGG | - | chr5_4:51744582-51744601 | Msa0856740:CDS | 40.0% |
| GTTTCTTCAGTTGCAAGTGA+AGG | - | chr5_4:51744627-51744646 | Msa0856740:CDS | 40.0% | |
| TTTGTTCATGGTGTAGGTGT+TGG | - | chr5_4:51744793-51744812 | Msa0856740:CDS | 40.0% | |
| ! | TGTTGGCAGCTGATGAATTT+TGG | - | chr5_4:51744810-51744829 | Msa0856740:CDS | 40.0% |
| !! | GATGAATTTTGGCCAGTCAA+TGG | - | chr5_4:51744821-51744840 | Msa0856740:CDS | 40.0% |
| ! | GATGGTTCACAAAGCACTAA+TGG | - | chr5_4:51743417-51743436 | Msa0856740:intron | 40.0% |
| TCTCCTACTCTATGCAGAAA+AGG | - | chr5_4:51743480-51743499 | Msa0856740:intron | 40.0% | |
| ! | TGACCTTTTCTGCATAGAGT+AGG | + | chr5_4:51743486-51743505 | None:intergenic | 40.0% |
| ACAAATTTGTGCATGGTGCA+AGG | - | chr5_4:51743690-51743709 | Msa0856740:intron | 40.0% | |
| GAAACTTCAAGTGGTAGCTA+TGG | - | chr5_4:51743726-51743745 | Msa0856740:intron | 40.0% | |
| ATGGTGAAAGTTCATGTGGA+TGG | - | chr5_4:51743781-51743800 | Msa0856740:CDS | 40.0% | |
| AGAAGATCGCTTCTTCAAGA+CGG | + | chr5_4:51743886-51743905 | None:intergenic | 40.0% | |
| CTTGAAGAAGCGATCTTCTA+TGG | - | chr5_4:51743887-51743906 | Msa0856740:intron | 40.0% | |
| GAAGAGAGAGAATAAGTGAG+AGG | - | chr5_4:51744399-51744418 | Msa0856740:CDS | 40.0% | |
| CATTTGGCACAAGTTCTTGT+AGG | + | chr5_4:51744433-51744452 | None:intergenic | 40.0% | |
| CTACAAGAACTTGTGCCAAA+TGG | - | chr5_4:51744431-51744450 | Msa0856740:CDS | 40.0% | |
| !! | GGTTGATTTGGTTACCATGT+TGG | - | chr5_4:51744582-51744601 | Msa0856740:CDS | 40.0% |
| GTTTCTTCAGTTGCAAGTGA+AGG | - | chr5_4:51744627-51744646 | Msa0856740:CDS | 40.0% | |
| TTTGTTCATGGTGTAGGTGT+TGG | - | chr5_4:51744793-51744812 | Msa0856740:CDS | 40.0% | |
| ! | TGTTGGCAGCTGATGAATTT+TGG | - | chr5_4:51744810-51744829 | Msa0856740:CDS | 40.0% |
| !! | GATGAATTTTGGCCAGTCAA+TGG | - | chr5_4:51744821-51744840 | Msa0856740:CDS | 40.0% |
| ! | TGCTTAGCTTTCAACAGAGC+TGG | - | chr5_4:51743610-51743629 | Msa0856740:CDS | 45.0% |
| TAGCTTTCAACAGAGCTGGA+TGG | - | chr5_4:51743614-51743633 | Msa0856740:CDS | 45.0% | |
| TCGTCATCACAAGGGACATT+TGG | + | chr5_4:51743819-51743838 | None:intergenic | 45.0% | |
| GTATTCATCCCATTTGACCG+CGG | + | chr5_4:51744026-51744045 | None:intergenic | 45.0% | |
| ! | TGATGTTTCTGTCCTGATCG+CGG | - | chr5_4:51744057-51744076 | Msa0856740:intron | 45.0% |
| TTCTTACTTGCAGCTGTGCA+TGG | + | chr5_4:51744230-51744249 | None:intergenic | 45.0% | |
| ! | ACACTTTGAGGATCCTTGGA+TGG | + | chr5_4:51744272-51744291 | None:intergenic | 45.0% |
| ! | AGCAACACTTTGAGGATCCT+TGG | + | chr5_4:51744276-51744295 | None:intergenic | 45.0% |
| ! | CTTGGGTTTGAAGCAAACCT+TGG | + | chr5_4:51744300-51744319 | None:intergenic | 45.0% |
| ACTTGTGCCAAATGGTTCCA+AGG | - | chr5_4:51744439-51744458 | Msa0856740:CDS | 45.0% | |
| !! | GAATTTTGGCCAGTCAATGG+TGG | - | chr5_4:51744824-51744843 | Msa0856740:CDS | 45.0% |
| ! | TGCTTAGCTTTCAACAGAGC+TGG | - | chr5_4:51743610-51743629 | Msa0856740:CDS | 45.0% |
| TAGCTTTCAACAGAGCTGGA+TGG | - | chr5_4:51743614-51743633 | Msa0856740:CDS | 45.0% | |
| TCGTCATCACAAGGGACATT+TGG | + | chr5_4:51743819-51743838 | None:intergenic | 45.0% | |
| GTATTCATCCCATTTGACCG+CGG | + | chr5_4:51744026-51744045 | None:intergenic | 45.0% | |
| ! | TGATGTTTCTGTCCTGATCG+CGG | - | chr5_4:51744057-51744076 | Msa0856740:intron | 45.0% |
| TTCTTACTTGCAGCTGTGCA+TGG | + | chr5_4:51744230-51744249 | None:intergenic | 45.0% | |
| ! | ACACTTTGAGGATCCTTGGA+TGG | + | chr5_4:51744272-51744291 | None:intergenic | 45.0% |
| ! | AGCAACACTTTGAGGATCCT+TGG | + | chr5_4:51744276-51744295 | None:intergenic | 45.0% |
| ! | CTTGGGTTTGAAGCAAACCT+TGG | + | chr5_4:51744300-51744319 | None:intergenic | 45.0% |
| ACTTGTGCCAAATGGTTCCA+AGG | - | chr5_4:51744439-51744458 | Msa0856740:CDS | 45.0% | |
| !! | GAATTTTGGCCAGTCAATGG+TGG | - | chr5_4:51744824-51744843 | Msa0856740:CDS | 45.0% |
| !! | GAAAAAAATAATAAAATTAA+AGG | + | chr5_4:51744090-51744109 | None:intergenic | 5.0% |
| !! | GAAAAAAATAATAAAATTAA+AGG | + | chr5_4:51744090-51744109 | None:intergenic | 5.0% |
| CATCGTCGTCGTCATCACAA+GGG | + | chr5_4:51743827-51743846 | None:intergenic | 50.0% | |
| TCATCGTCGTCGTCATCACA+AGG | + | chr5_4:51743828-51743847 | None:intergenic | 50.0% | |
| TGCACATAACCGCGGTCAAA+TGG | - | chr5_4:51744014-51744033 | Msa0856740:intron | 50.0% | |
| GCACATAACCGCGGTCAAAT+GGG | - | chr5_4:51744015-51744034 | Msa0856740:intron | 50.0% | |
| TGTGCATGGCTTCTTGGCAT+TGG | + | chr5_4:51744216-51744235 | None:intergenic | 50.0% | |
| !! | TCCTCAAAGTGTTGCTGCCA+AGG | - | chr5_4:51744280-51744299 | Msa0856740:intron | 50.0% |
| ACCTTGGCAGCAACACTTTG+AGG | + | chr5_4:51744284-51744303 | None:intergenic | 50.0% | |
| ! | GGAGCTTTTCCACCATTGAC+TGG | + | chr5_4:51744836-51744855 | None:intergenic | 50.0% |
| GGTGGAAAAGCTCCTGACAT+TGG | - | chr5_4:51744842-51744861 | Msa0856740:CDS | 50.0% | |
| CATCGTCGTCGTCATCACAA+GGG | + | chr5_4:51743827-51743846 | None:intergenic | 50.0% | |
| TCATCGTCGTCGTCATCACA+AGG | + | chr5_4:51743828-51743847 | None:intergenic | 50.0% | |
| TGCACATAACCGCGGTCAAA+TGG | - | chr5_4:51744014-51744033 | Msa0856740:intron | 50.0% | |
| GCACATAACCGCGGTCAAAT+GGG | - | chr5_4:51744015-51744034 | Msa0856740:intron | 50.0% | |
| TGTGCATGGCTTCTTGGCAT+TGG | + | chr5_4:51744216-51744235 | None:intergenic | 50.0% | |
| !! | TCCTCAAAGTGTTGCTGCCA+AGG | - | chr5_4:51744280-51744299 | Msa0856740:intron | 50.0% |
| ACCTTGGCAGCAACACTTTG+AGG | + | chr5_4:51744284-51744303 | None:intergenic | 50.0% | |
| ! | GGAGCTTTTCCACCATTGAC+TGG | + | chr5_4:51744836-51744855 | None:intergenic | 50.0% |
| GGTGGAAAAGCTCCTGACAT+TGG | - | chr5_4:51744842-51744861 | Msa0856740:CDS | 50.0% | |
| AAAGGTCTGCAACCGCGATC+AGG | + | chr5_4:51744072-51744091 | None:intergenic | 55.0% | |
| !! | CATGGCTTCTTGGCATTGGC+AGG | + | chr5_4:51744212-51744231 | None:intergenic | 55.0% |
| TGCAGCTGTGCATGGCTTCT+TGG | + | chr5_4:51744222-51744241 | None:intergenic | 55.0% | |
| AAAGGTCTGCAACCGCGATC+AGG | + | chr5_4:51744072-51744091 | None:intergenic | 55.0% | |
| !! | CATGGCTTCTTGGCATTGGC+AGG | + | chr5_4:51744212-51744231 | None:intergenic | 55.0% |
| TGCAGCTGTGCATGGCTTCT+TGG | + | chr5_4:51744222-51744241 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 51743315 | 51744910 | 51743315 | ID=Msa0856740;Name=Msa0856740 |
| chr5_4 | mRNA | 51743315 | 51744910 | 51743315 | ID=Msa0856740-mRNA-1;Parent=Msa0856740;Name=Msa0856740-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0|0|0|1|1|1|5|0|311 |
| chr5_4 | exon | 51744317 | 51744910 | 51744317 | ID=Msa0856740-mRNA-1:exon:16106;Parent=Msa0856740-mRNA-1 |
| chr5_4 | exon | 51743924 | 51744031 | 51743924 | ID=Msa0856740-mRNA-1:exon:16105;Parent=Msa0856740-mRNA-1 |
| chr5_4 | exon | 51743765 | 51743830 | 51743765 | ID=Msa0856740-mRNA-1:exon:16104;Parent=Msa0856740-mRNA-1 |
| chr5_4 | exon | 51743577 | 51743642 | 51743577 | ID=Msa0856740-mRNA-1:exon:16103;Parent=Msa0856740-mRNA-1 |
| chr5_4 | exon | 51743315 | 51743416 | 51743315 | ID=Msa0856740-mRNA-1:exon:16102;Parent=Msa0856740-mRNA-1 |
| chr5_4 | CDS | 51744317 | 51744910 | 51744317 | ID=Msa0856740-mRNA-1:cds;Parent=Msa0856740-mRNA-1 |
| chr5_4 | CDS | 51743924 | 51744031 | 51743924 | ID=Msa0856740-mRNA-1:cds;Parent=Msa0856740-mRNA-1 |
| chr5_4 | CDS | 51743765 | 51743830 | 51743765 | ID=Msa0856740-mRNA-1:cds;Parent=Msa0856740-mRNA-1 |
| chr5_4 | CDS | 51743577 | 51743642 | 51743577 | ID=Msa0856740-mRNA-1:cds;Parent=Msa0856740-mRNA-1 |
| chr5_4 | CDS | 51743315 | 51743416 | 51743315 | ID=Msa0856740-mRNA-1:cds;Parent=Msa0856740-mRNA-1 |
| Gene Sequence |
| Protein sequence |
