AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0817550

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0817550 MtrunA17_Chr5g0436341 99.346 306 2 0 1 306 1 306 0.0 613
Msa0817550 MtrunA17_Chr3g0112981 89.769 303 31 0 4 306 20 322 0.0 557
Msa0817550 MtrunA17_Chr4g0008071 72.039 304 85 0 1 304 5 308 1.29e-161 452
Msa0817550 MtrunA17_Chr8g0382081 73.490 298 77 2 8 304 11 307 1.33e-160 449
Msa0817550 MtrunA17_Chr4g0056661 66.780 295 98 0 12 306 56 350 1.35e-134 385
Msa0817550 MtrunA17_Chr3g0103641 83.019 159 27 0 148 306 3 161 5.98e-96 280
Msa0817550 MtrunA17_Chr3g0103631 75.316 158 39 0 4 161 5 162 4.33e-84 250
Msa0817550 MtrunA17_Chr3g0114581 33.010 309 199 2 1 303 1 307 5.06e-51 171
Msa0817550 MtrunA17_Chr1g0160071 33.677 291 191 1 13 303 18 306 2.93e-50 169
Msa0817550 MtrunA17_Chr2g0307091 32.770 296 189 4 11 302 16 305 9.97e-36 131
Msa0817550 MtrunA17_Chr3g0137921 30.201 298 194 5 11 302 20 309 7.33e-31 118
Msa0817550 MtrunA17_Chr7g0270591 31.488 289 186 5 22 305 28 309 2.28e-28 112
Msa0817550 MtrunA17_Chr4g0063601 30.233 301 162 8 11 302 16 277 1.08e-22 95.9
Msa0817550 MtrunA17_Chr4g0069261 29.758 289 191 5 22 305 24 305 3.26e-22 95.5
Msa0817550 MtrunA17_Chr2g0312911 24.830 294 203 5 22 306 24 308 3.49e-21 92.0
Msa0817550 MtrunA17_Chr4g0058971 26.102 295 202 7 16 303 92 377 4.14e-18 84.0
Msa0817550 MtrunA17_Chr8g0341861 24.422 303 213 7 9 299 169 467 1.22e-15 77.0
Msa0817550 MtrunA17_Chr6g0449891 27.575 301 201 5 12 303 116 408 3.87e-14 72.4
Msa0817550 MtrunA17_Chr4g0046561 27.687 307 193 13 16 306 106 399 4.84e-14 72.0
Msa0817550 MtrunA17_Chr5g0419001 27.723 303 193 12 16 304 111 401 4.88e-14 72.0
Msa0817550 MtrunA17_Chr3g0117501 27.948 229 162 3 81 306 178 406 6.90e-14 71.6
Msa0817550 MtrunA17_Chr3g0097931 22.549 306 225 7 3 303 103 401 5.87e-13 68.9
Msa0817550 MtrunA17_Chr2g0288011 22.403 308 227 7 2 304 96 396 1.96e-12 67.4
Msa0817550 MtrunA17_Chr2g0298931 26.909 275 171 9 21 283 67 323 2.60e-12 66.6
Msa0817550 MtrunA17_Chr2g0326791 25.392 319 210 8 1 305 1 305 6.79e-12 65.5
Msa0817550 MtrunA17_Chr6g0467391 25.084 299 200 6 18 305 20 305 1.96e-11 63.9
Msa0817550 MtrunA17_Chr6g0467371 25.084 299 200 6 18 305 20 305 1.96e-11 63.9
Msa0817550 MtrunA17_Chr4g0074541 22.449 294 217 6 14 303 106 392 3.68e-11 63.5
Msa0817550 MtrunA17_Chr4g0028931 25.633 316 211 8 1 304 1 304 7.87e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0817550 AT3G11320.1 86.799 303 40 0 4 306 6 308 0.0 544
Msa0817550 AT5G05820.1 84.967 306 46 0 1 306 3 308 0.0 540
Msa0817550 AT5G04160.1 71.336 307 85 1 1 304 1 307 1.29e-160 450
Msa0817550 AT3G10290.1 71.717 297 84 0 8 304 57 353 5.79e-159 447
Msa0817550 AT1G12500.1 65.347 303 105 0 4 306 54 356 8.57e-139 397
Msa0817550 AT1G21870.1 35.836 293 182 4 13 303 19 307 4.33e-52 174
Msa0817550 AT1G77610.1 34.868 304 194 3 1 303 1 301 7.16e-52 174
Msa0817550 AT5G11230.1 32.095 296 187 5 13 302 22 309 3.63e-33 125
Msa0817550 AT5G25400.1 31.544 298 190 5 11 302 20 309 4.14e-32 122
Msa0817550 AT4G32390.1 31.544 298 190 5 11 302 20 309 3.06e-31 120
Msa0817550 AT2G25520.1 31.879 298 189 5 11 302 20 309 1.55e-30 118
Msa0817550 AT3G17430.2 30.450 289 189 5 22 305 25 306 3.80e-26 106
Msa0817550 AT3G17430.1 30.450 289 189 5 22 305 25 306 3.80e-26 106
Msa0817550 AT1G53660.1 26.298 289 200 5 22 305 30 310 5.88e-25 102
Msa0817550 AT1G53660.3 26.298 289 200 5 22 305 48 328 7.39e-25 102
Msa0817550 AT1G53660.4 26.007 273 191 4 36 305 12 276 1.39e-23 98.6
Msa0817550 AT3G14410.1 26.480 321 212 6 1 306 1 312 1.85e-22 95.9
Msa0817550 AT1G48230.1 30.450 289 189 5 22 305 25 306 4.17e-22 95.5
Msa0817550 AT1G53660.5 26.339 224 155 3 84 305 1 216 4.30e-19 84.7
Msa0817550 AT1G48230.2 29.437 231 153 4 78 305 10 233 1.22e-14 73.2
Msa0817550 AT5G17630.1 25.168 298 207 9 16 306 119 407 1.41e-14 73.9
Msa0817550 AT3G01550.1 26.962 293 204 5 16 303 86 373 2.87e-14 73.2
Msa0817550 AT5G57100.1 25.260 289 203 7 21 306 76 354 3.99e-14 72.8
Msa0817550 AT5G54800.1 23.607 305 221 7 3 302 90 387 6.37e-14 72.0
Msa0817550 AT1G06470.4 23.453 307 211 8 9 299 75 373 2.20e-13 70.5
Msa0817550 AT1G06470.2 23.453 307 211 8 9 299 75 373 2.20e-13 70.5
Msa0817550 AT1G06470.1 23.453 307 211 8 9 299 75 373 2.20e-13 70.5
Msa0817550 AT1G06470.3 23.453 307 211 8 9 299 75 373 2.20e-13 70.5
Msa0817550 AT1G53660.2 28.333 180 122 4 22 196 48 225 2.57e-13 68.9
Msa0817550 AT5G46110.2 27.124 306 196 11 16 306 2 295 1.42e-12 67.4
Msa0817550 AT5G46110.1 26.557 305 199 9 16 306 115 408 1.84e-12 67.8
Msa0817550 AT5G46110.4 26.821 302 197 9 16 304 115 405 2.48e-12 67.4
Msa0817550 AT1G61800.1 21.498 307 229 7 2 303 89 388 3.58e-12 67.0
Msa0817550 AT5G33320.1 27.425 299 199 8 12 302 111 399 5.58e-12 66.2
Msa0817550 AT1G61800.2 21.036 309 232 7 2 305 89 390 9.04e-12 65.9
Msa0817550 AT3G01550.2 26.280 293 201 6 16 303 86 368 2.36e-11 64.3
Msa0817550 AT2G28315.1 23.920 301 211 6 6 299 5 294 3.55e-11 63.5
Msa0817550 AT2G28315.2 23.920 301 211 6 6 299 5 294 5.71e-11 62.8
Msa0817550 AT5G55950.4 26.408 284 192 7 21 299 9 280 6.07e-11 62.8

Find 99 sgRNAs with CRISPR-Local

Find 252 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTTGATTCTTTCATGGTTT+TGG 0.095645 5_3:-52882081 None:intergenic
ATAAAACTGCACTGCCTAAT+TGG 0.147040 5_3:-52885907 None:intergenic
GCTCTTGTTCCTGTTGTTAC+TGG 0.193329 5_3:+52882488 Msa0817550:CDS
TTGGTACCATGAGCTATTTC+TGG 0.216098 5_3:-52885705 None:intergenic
CTGGACAGTTGCTAATATAA+TGG 0.233512 5_3:-52885686 None:intergenic
GAACCAAGCTTCCATTTGTT+TGG 0.241327 5_3:+52884174 Msa0817550:CDS
ATCATTCCAGTGACTGAAAC+TGG 0.253281 5_3:-52885449 None:intergenic
TGACGAAAGAGTTGTATAAT+TGG 0.260273 5_3:+52885802 Msa0817550:three_prime_UTR
TGACACATGGTGAGGAAAAT+TGG 0.261872 5_3:-52882203 None:intergenic
GGCTTTGCTTGATTCTTTCA+TGG 0.277463 5_3:-52882087 None:intergenic
AGAGGAATGGGTTTGTTAGA+AGG 0.289002 5_3:-52882027 None:intergenic
AACCAAGCTTCCATTTGTTT+GGG 0.304562 5_3:+52884175 Msa0817550:CDS
TCTTCCTGCTACACTCTATA+TGG 0.309783 5_3:+52884432 Msa0817550:CDS
AGCAATCGCTTGGTTCAAAA+TGG 0.316684 5_3:+52882256 Msa0817550:CDS
ACTCTATATAAGAATTCTTT+TGG 0.325384 5_3:+52885632 Msa0817550:three_prime_UTR
TTGAAAGGAGATACTTGTTT+AGG 0.330177 5_3:-52882163 None:intergenic
TACAGAGATCATTCACTTAC+TGG 0.336378 5_3:-52885731 None:intergenic
TGGACAGTTGCTAATATAAT+GGG 0.358432 5_3:-52885685 None:intergenic
AGACAAAATTGTTCAGAATC+AGG 0.369546 5_3:+52885600 Msa0817550:three_prime_UTR
TAATGGGAACCCCTTCAATA+AGG 0.372684 5_3:-52885669 None:intergenic
GATTGCTACGTAGCTGAATA+AGG 0.373412 5_3:-52882240 None:intergenic
TTCAATAAGGCTTTCTATGT+GGG 0.392147 5_3:-52885656 None:intergenic
TACCAGTGCTCTCACCCTTC+AGG 0.394449 5_3:+52884579 Msa0817550:CDS
AAGAAGAAAGTGCAAGGAAA+TGG 0.405412 5_3:+52881878 Msa0817550:five_prime_UTR
GAGATGATATGAAGATCATT+TGG 0.435417 5_3:+52884491 Msa0817550:CDS
AGTTTCAGTCACTGGAATGA+TGG 0.435874 5_3:+52885451 Msa0817550:CDS
TAAAACTGCACTGCCTAATT+GGG 0.438794 5_3:-52885906 None:intergenic
ATGAGTGAAGGAAAGGTAAA+CGG 0.447059 5_3:-52881941 None:intergenic
GGTTATTCACTCACAGTCCT+TGG 0.450720 5_3:+52885473 Msa0817550:CDS
AGGTACTTGGGAATGCTAAA+GGG 0.451974 5_3:+52885387 Msa0817550:intron
GTGGTATATAGTACCCAATT+AGG 0.456359 5_3:+52885893 Msa0817550:three_prime_UTR
AATGATCTTCATATCATCTC+TGG 0.459935 5_3:-52884488 None:intergenic
AACGGGAACGCGTATACAAA+CGG 0.460521 5_3:-52881923 None:intergenic
ACGGGAACGCGTATACAAAC+GGG 0.461233 5_3:-52881922 None:intergenic
CTGGTGTTATCATTGCTAGT+GGG 0.461823 5_3:+52882507 Msa0817550:CDS
AGAAACCCAGTTTCAGTCAC+TGG 0.462050 5_3:+52885443 Msa0817550:CDS
AGTTTGTTCATATAGGTACT+TGG 0.462356 5_3:+52885374 Msa0817550:intron
TGTTCAGAATCAGGATGTTA+CGG 0.465758 5_3:+52885609 Msa0817550:three_prime_UTR
TTGGAGCCATGTAAAGTAGA+AGG 0.468805 5_3:-52884393 None:intergenic
CTTCAATAAGGCTTTCTATG+TGG 0.470060 5_3:-52885657 None:intergenic
ATCATTCACTTACTGGAACT+TGG 0.472047 5_3:-52885724 None:intergenic
TATGAACCTTCTACTTTACA+TGG 0.472403 5_3:+52884387 Msa0817550:CDS
TAGGTACTTGGGAATGCTAA+AGG 0.479924 5_3:+52885386 Msa0817550:intron
ATGGATCTATGAAGAGGAAT+GGG 0.480468 5_3:-52882039 None:intergenic
ATATTATGAACCCAAACAAA+TGG 0.482955 5_3:-52884185 None:intergenic
TCTTCCATATAGAGTGTAGC+AGG 0.486739 5_3:-52884436 None:intergenic
ATGATAACACCAGTAACAAC+AGG 0.491199 5_3:-52882497 None:intergenic
AACCCAAACAAATGGAAGCT+TGG 0.492671 5_3:-52884177 None:intergenic
CATGGATCTATGAAGAGGAA+TGG 0.500732 5_3:-52882040 None:intergenic
CATTCCTCAGTATGCCAACA+TGG 0.511027 5_3:-52885760 None:intergenic
AAGTATCTCCTTTCAAACTA+CGG 0.511440 5_3:+52882170 Msa0817550:CDS
GTGTTGAAGGTGTCAAGAAA+AGG 0.514472 5_3:-52881817 None:intergenic
TATAGAGTGTAGCAGGAAGA+AGG 0.515468 5_3:-52884429 None:intergenic
GACACATGGTGAGGAAAATT+GGG 0.517372 5_3:-52882202 None:intergenic
AGAAGGAAAACAACAGCCAT+TGG 0.520144 5_3:-52884412 None:intergenic
GTTTGTTCATATAGGTACTT+GGG 0.521176 5_3:+52885375 Msa0817550:intron
TCTACTTTACATGGCTCCAA+TGG 0.521350 5_3:+52884396 Msa0817550:CDS
TACCTGAAGGGTGAGAGCAC+TGG 0.521847 5_3:-52884581 None:intergenic
GTTTCAGTCACTGGAATGAT+GGG 0.522262 5_3:+52885452 Msa0817550:CDS
CACATAGAAAGCCTTATTGA+AGG 0.522661 5_3:+52885658 Msa0817550:three_prime_UTR
ATTTGAAACCGTAGTTTGAA+AGG 0.524913 5_3:-52882178 None:intergenic
GGAGATACTTGTTTAGGAGT+AGG 0.527615 5_3:-52882157 None:intergenic
CGAGAACGCATGAATTGCAT+TGG 0.534806 5_3:-52882281 None:intergenic
ACATAGAAAGCCTTATTGAA+GGG 0.540008 5_3:+52885659 Msa0817550:three_prime_UTR
TGAGTGAAGGAAAGGTAAAC+GGG 0.540228 5_3:-52881940 None:intergenic
TTGAAGGTGTCAAGAAAAGG+AGG 0.541117 5_3:-52881814 None:intergenic
GTGTCGTTTAATCAAGCTAT+CGG 0.549847 5_3:+52882389 Msa0817550:CDS
TCAGCTACGTAGCAATCGCT+TGG 0.551806 5_3:+52882246 Msa0817550:CDS
ACTGGTGTTATCATTGCTAG+TGG 0.562721 5_3:+52882506 Msa0817550:CDS
TAGGAGTAGGACTCCTATGT+TGG 0.563888 5_3:-52882144 None:intergenic
TGACGCTCAAAAGAGAGGCT+TGG 0.567754 5_3:+52882453 Msa0817550:CDS
TCATTCCAGTGACTGAAACT+GGG 0.574484 5_3:-52885448 None:intergenic
CAAGTGCGGAATTGAACAGC+AGG 0.586756 5_3:-52884516 None:intergenic
TTGTTCATGGATCTATGAAG+AGG 0.587339 5_3:-52882045 None:intergenic
CATAGAAAGCCTTATTGAAG+GGG 0.588595 5_3:+52885660 Msa0817550:three_prime_UTR
TGCTATGACGCTCAAAAGAG+AGG 0.597743 5_3:+52882448 Msa0817550:CDS
AAAAGGGAGGCATACCTGAA+GGG 0.598277 5_3:-52884593 None:intergenic
GGTACTTGGGAATGCTAAAG+GGG 0.601716 5_3:+52885388 Msa0817550:intron
AACTGTCCAGAAATAGCTCA+TGG 0.603467 5_3:+52885699 Msa0817550:three_prime_UTR
GCATGGTACTCATCCAACAT+AGG 0.604171 5_3:+52882131 Msa0817550:CDS
TATATGGAAGAAAATGTGAT+CGG 0.605292 5_3:+52884448 Msa0817550:CDS
TGAGATTAATGTTATTGTGA+AGG 0.605559 5_3:-52882108 None:intergenic
TCTCTGTAGTATACCCATGT+TGG 0.609260 5_3:+52885746 Msa0817550:three_prime_UTR
GTATTGTATGAGTGAAGGAA+AGG 0.609819 5_3:-52881948 None:intergenic
TCAATAAGGCTTTCTATGTG+GGG 0.615474 5_3:-52885655 None:intergenic
TGGTGTTATCATTGCTAGTG+GGG 0.620873 5_3:+52882508 Msa0817550:CDS
CACTATAAAGTACAACTCCA+AGG 0.624587 5_3:-52885490 None:intergenic
TATTGGTATTGTATGAGTGA+AGG 0.631202 5_3:-52881953 None:intergenic
ATTGACAAAATATGCAAGTG+CGG 0.636129 5_3:-52884530 None:intergenic
AATATGTGTTGCAGCTACAG+CGG 0.656983 5_3:+52884203 Msa0817550:CDS
ATTCCTCAGTATGCCAACAT+GGG 0.659167 5_3:-52885759 None:intergenic
CAATAACATTAATCTCAGCA+TGG 0.659834 5_3:+52882114 Msa0817550:CDS
CGGGAACGCGTATACAAACG+GGG 0.668750 5_3:-52881921 None:intergenic
AAATGTGATCGGCATCACGT+TGG 0.673641 5_3:+52884459 Msa0817550:CDS
ATACCCATGTTGGCATACTG+AGG 0.677351 5_3:+52885756 Msa0817550:three_prime_UTR
ATAGCTTGATTAAACGACAC+AGG 0.688704 5_3:-52882386 None:intergenic
ACATGCTGTCATGTGACACA+TGG 0.739726 5_3:-52882216 None:intergenic
CTGTCATGTGACACATGGTG+AGG 0.745537 5_3:-52882211 None:intergenic
GGGAACGCGTATACAAACGG+GGG 0.751360 5_3:-52881920 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTGTAATTTTTTATTGTT+GGG + chr5_3:52882753-52882772 Msa0817550:intron 10.0%
!!! AAATTTGAAATAAATAAGTT+TGG - chr5_3:52882858-52882877 None:intergenic 10.0%
!!! ATTTTTACTTATATTTAAGA+TGG + chr5_3:52882895-52882914 Msa0817550:intron 10.0%
!! TTATCAAGTTATATAATAAA+TGG + chr5_3:52884323-52884342 Msa0817550:intron 10.0%
!! TATCAAGTTATATAATAAAT+GGG + chr5_3:52884324-52884343 Msa0817550:intron 10.0%
!!! AAAATGTAAATATTTGTTTT+TGG + chr5_3:52885179-52885198 Msa0817550:intron 10.0%
!!! AAATGTAAATATTTGTTTTT+GGG + chr5_3:52885180-52885199 Msa0817550:intron 10.0%
!! AAAGTTTATAAATTGCATTT+AGG + chr5_3:52882704-52882723 Msa0817550:intron 15.0%
!! AAGTTTATAAATTGCATTTA+GGG + chr5_3:52882705-52882724 Msa0817550:intron 15.0%
!!! CTTTTGTAATTTTTTATTGT+TGG + chr5_3:52882752-52882771 Msa0817550:intron 15.0%
!!! AATATAATTTTCTTAAGCAA+GGG - chr5_3:52882784-52882803 None:intergenic 15.0%
!!! TAATATAATTTTCTTAAGCA+AGG - chr5_3:52882785-52882804 None:intergenic 15.0%
!!! AAAATAAGAAGTATAAAAGT+TGG + chr5_3:52883086-52883105 Msa0817550:intron 15.0%
!!! AGATTTTTTTAATTGAGAAA+TGG - chr5_3:52883335-52883354 None:intergenic 15.0%
!! ATTTCTCAATTAAAAAAATC+TGG + chr5_3:52883334-52883353 Msa0817550:intron 15.0%
!! AATCAAATTAAGCAAAATTA+TGG + chr5_3:52883677-52883696 Msa0817550:intron 15.0%
!! TATGAAAATAAGAATCTTTA+TGG + chr5_3:52884107-52884126 Msa0817550:intron 15.0%
!! TTTATTCAATTTGTACGATT+TGG + chr5_3:52882633-52882652 Msa0817550:intron 20.0%
!! AGTTTATAAATTGCATTTAG+GGG + chr5_3:52882706-52882725 Msa0817550:intron 20.0%
!!! TTTGCTTACATTTTTTTTAG+AGG - chr5_3:52882832-52882851 None:intergenic 20.0%
!! ATTAATCACAACAAATGAAA+TGG + chr5_3:52882963-52882982 Msa0817550:intron 20.0%
!!! TTTTTTGTCTTAATTCCTAA+AGG + chr5_3:52882995-52883014 Msa0817550:intron 20.0%
!!! TTTTTGTCTTAATTCCTAAA+GGG + chr5_3:52882996-52883015 Msa0817550:intron 20.0%
!! AATTTAGTGTGATTATATGT+TGG + chr5_3:52883192-52883211 Msa0817550:intron 20.0%
!! AAATTACCAATAGTTAGAAT+CGG - chr5_3:52883755-52883774 None:intergenic 20.0%
!! AATGATCAAATCTTTATCAT+AGG + chr5_3:52883999-52884018 Msa0817550:intron 20.0%
!!! AGATTCTTATTTTCATAGTT+TGG - chr5_3:52884104-52884123 None:intergenic 20.0%
!!! AAGAAACTTGTTTATAACAA+TGG - chr5_3:52884714-52884733 None:intergenic 20.0%
!!! ACAATTGTTTTAAACTTTGT+AGG + chr5_3:52885133-52885152 Msa0817550:intron 20.0%
!!! CAATTGTTTTAAACTTTGTA+GGG + chr5_3:52885134-52885153 Msa0817550:intron 20.0%
!!! ACTCTATATAAGAATTCTTT+TGG + chr5_3:52885632-52885651 Msa0817550:three_prime_UTR 20.0%
!!! AAGTTCGTATTTTTTTATTG+TGG + chr5_3:52885874-52885893 Msa0817550:three_prime_UTR 20.0%
!!! AAAAACGGTGTTATTGTTAT+TGG - chr5_3:52881973-52881992 None:intergenic 25.0%
! AAGCGTATAAAAGACAAAAA+CGG - chr5_3:52881988-52882007 None:intergenic 25.0%
! TGAGATTAATGTTATTGTGA+AGG - chr5_3:52882111-52882130 None:intergenic 25.0%
!!! TTTTTGGTAATGTTTCGTTA+CGG + chr5_3:52882357-52882376 Msa0817550:CDS 25.0%
!!! ACAATTGTTTCTGATTTACA+AGG - chr5_3:52883023-52883042 None:intergenic 25.0%
! TGATGTTCTCAAATTATTAG+CGG - chr5_3:52883169-52883188 None:intergenic 25.0%
!!! GACCATGTTATTTATGTTTT+CGG + chr5_3:52883433-52883452 Msa0817550:intron 25.0%
!!! ACCATGTTATTTATGTTTTC+GGG + chr5_3:52883434-52883453 Msa0817550:intron 25.0%
!!! TATTTATGTTTTCGGGATTT+TGG + chr5_3:52883441-52883460 Msa0817550:intron 25.0%
!!! TTGGACTTTGTTTTTAAAAC+TGG + chr5_3:52883622-52883641 Msa0817550:intron 25.0%
!!! TGGACTTTGTTTTTAAAACT+GGG + chr5_3:52883623-52883642 Msa0817550:intron 25.0%
!! TACTAATGACTTTTGATAAG+TGG - chr5_3:52883709-52883728 None:intergenic 25.0%
!!! TCAATTGTTTTTATGAGCAA+TGG + chr5_3:52883795-52883814 Msa0817550:intron 25.0%
! ACTTAAATCAGATATTTCAC+TGG - chr5_3:52883884-52883903 None:intergenic 25.0%
!! ATCTGATTTAAGTTTGTCTT+AGG + chr5_3:52883891-52883910 Msa0817550:intron 25.0%
! ATATTATGAACCCAAACAAA+TGG - chr5_3:52884188-52884207 None:intergenic 25.0%
! CAGAAGAAAACAAATTAATG+AGG - chr5_3:52884303-52884322 None:intergenic 25.0%
! TATATGGAAGAAAATGTGAT+CGG + chr5_3:52884448-52884467 Msa0817550:CDS 25.0%
!! ATGTTTTGTGACCAAAAAAT+TGG - chr5_3:52884560-52884579 None:intergenic 25.0%
! GTTGTATGACTATATGAAAA+GGG - chr5_3:52884612-52884631 None:intergenic 25.0%
! AGTTGTATGACTATATGAAA+AGG - chr5_3:52884613-52884632 None:intergenic 25.0%
! TATAACAATGGAAAAAAGCT+AGG - chr5_3:52884702-52884721 None:intergenic 25.0%
! CATAATTATTTCAAACCTCT+TGG + chr5_3:52884771-52884790 Msa0817550:intron 25.0%
!!! AATGCTGCTTATATTTTCAT+TGG + chr5_3:52884909-52884928 Msa0817550:intron 25.0%
! TAATGAGCATGATTCAAATA+AGG + chr5_3:52885244-52885263 Msa0817550:intron 25.0%
! AAAAAGAAGAAGAAAGTGCA+AGG + chr5_3:52881872-52881891 Msa0817550:five_prime_UTR 30.0%
TATTGGTATTGTATGAGTGA+AGG - chr5_3:52881956-52881975 None:intergenic 30.0%
!! TTGATTCTTTCATGGTTTTG+GGG - chr5_3:52882082-52882101 None:intergenic 30.0%
! CTTGATTCTTTCATGGTTTT+GGG - chr5_3:52882083-52882102 None:intergenic 30.0%
CAATAACATTAATCTCAGCA+TGG + chr5_3:52882114-52882133 Msa0817550:CDS 30.0%
TTGAAAGGAGATACTTGTTT+AGG - chr5_3:52882166-52882185 None:intergenic 30.0%
AAGTATCTCCTTTCAAACTA+CGG + chr5_3:52882170-52882189 Msa0817550:CDS 30.0%
! ATTTGAAACCGTAGTTTGAA+AGG - chr5_3:52882181-52882200 None:intergenic 30.0%
CGAAACATTACCAAAAACAA+CGG - chr5_3:52882354-52882373 None:intergenic 30.0%
ATAAATTGCATTTAGGGGTA+TGG + chr5_3:52882711-52882730 Msa0817550:intron 30.0%
! TAAATTGCATTTAGGGGTAT+GGG + chr5_3:52882712-52882731 Msa0817550:intron 30.0%
!!! TTCTTATTTTTCTCTCTCCT+CGG - chr5_3:52883076-52883095 None:intergenic 30.0%
CTTCATAGTCTACATGTATA+CGG + chr5_3:52883283-52883302 Msa0817550:intron 30.0%
GAGAGTTCATTAACAACTTA+AGG + chr5_3:52883408-52883427 Msa0817550:intron 30.0%
TCCCGAAAACATAAATAACA+TGG - chr5_3:52883438-52883457 None:intergenic 30.0%
! TTTTTGTAACTCTGCAACTA+AGG - chr5_3:52883575-52883594 None:intergenic 30.0%
ACAATTGAACTAGATCTGTA+TGG - chr5_3:52883783-52883802 None:intergenic 30.0%
AGAGATTCTTATGTACACAA+TGG - chr5_3:52883851-52883870 None:intergenic 30.0%
TTCACTTTGCAGTTACTAAT+AGG + chr5_3:52883969-52883988 Msa0817550:intron 30.0%
CTTGATATGTTCATATTGTG+TGG + chr5_3:52884024-52884043 Msa0817550:intron 30.0%
! TCTTTTCTTTCTTTGCTTAC+AGG + chr5_3:52884149-52884168 Msa0817550:intron 30.0%
! CTTTTCTTTCTTTGCTTACA+GGG + chr5_3:52884150-52884169 Msa0817550:intron 30.0%
! GAATTTTGCTTTCATCTGAA+GGG + chr5_3:52884253-52884272 Msa0817550:CDS 30.0%
TATGAACCTTCTACTTTACA+TGG + chr5_3:52884387-52884406 Msa0817550:CDS 30.0%
AATGATCTTCATATCATCTC+TGG - chr5_3:52884491-52884510 None:intergenic 30.0%
GAGATGATATGAAGATCATT+TGG + chr5_3:52884491-52884510 Msa0817550:CDS 30.0%
ATTGACAAAATATGCAAGTG+CGG - chr5_3:52884533-52884552 None:intergenic 30.0%
!!! TGTCAATCTGACCAATTTTT+TGG + chr5_3:52884546-52884565 Msa0817550:CDS 30.0%
! AAATTGACATCCTTAGTTCT+AGG - chr5_3:52884996-52885015 None:intergenic 30.0%
!! AACTTTTCCTGATCTAGAAT+AGG - chr5_3:52885224-52885243 None:intergenic 30.0%
! ATCGAAGAGTTTGTTCATAT+AGG + chr5_3:52885367-52885386 Msa0817550:intron 30.0%
! AGTTTGTTCATATAGGTACT+TGG + chr5_3:52885374-52885393 Msa0817550:intron 30.0%
GTTTGTTCATATAGGTACTT+GGG + chr5_3:52885375-52885394 Msa0817550:intron 30.0%
AGACAAAATTGTTCAGAATC+AGG + chr5_3:52885600-52885619 Msa0817550:three_prime_UTR 30.0%
TTCAATAAGGCTTTCTATGT+GGG - chr5_3:52885659-52885678 None:intergenic 30.0%
!! ACATAGAAAGCCTTATTGAA+GGG + chr5_3:52885659-52885678 Msa0817550:three_prime_UTR 30.0%
TGGACAGTTGCTAATATAAT+GGG - chr5_3:52885688-52885707 None:intergenic 30.0%
TGACGAAAGAGTTGTATAAT+TGG + chr5_3:52885802-52885821 Msa0817550:three_prime_UTR 30.0%
!!! CAGCGTTTTTTAAGTGTTGA+AGG - chr5_3:52881833-52881852 None:intergenic 35.0%
! AAGAAGAAAGTGCAAGGAAA+TGG + chr5_3:52881878-52881897 Msa0817550:five_prime_UTR 35.0%
ATGAGTGAAGGAAAGGTAAA+CGG - chr5_3:52881944-52881963 None:intergenic 35.0%
GTATTGTATGAGTGAAGGAA+AGG - chr5_3:52881951-52881970 None:intergenic 35.0%
ATGGATCTATGAAGAGGAAT+GGG - chr5_3:52882042-52882061 None:intergenic 35.0%
TTGTTCATGGATCTATGAAG+AGG - chr5_3:52882048-52882067 None:intergenic 35.0%
!!! GGATTATTGGGTTTTGTTCA+TGG - chr5_3:52882061-52882080 None:intergenic 35.0%
!!! TCATGGTTTTGGGGATTATT+GGG - chr5_3:52882073-52882092 None:intergenic 35.0%
!!! TTCATGGTTTTGGGGATTAT+TGG - chr5_3:52882074-52882093 None:intergenic 35.0%
! GCTTGATTCTTTCATGGTTT+TGG - chr5_3:52882084-52882103 None:intergenic 35.0%
!! TTCTGTGTTTCCGTTGTTTT+TGG + chr5_3:52882341-52882360 Msa0817550:CDS 35.0%
ATAGCTTGATTAAACGACAC+AGG - chr5_3:52882389-52882408 None:intergenic 35.0%
!! GTGTCGTTTAATCAAGCTAT+CGG + chr5_3:52882389-52882408 Msa0817550:CDS 35.0%
GCAAAAACCGCAGTAAAAAA+CGG - chr5_3:52882425-52882444 None:intergenic 35.0%
ATGATAACACCAGTAACAAC+AGG - chr5_3:52882500-52882519 None:intergenic 35.0%
CGTGTTTGATTGAAATGTGT+CGG + chr5_3:52882659-52882678 Msa0817550:intron 35.0%
TATGAAGCACAGACATTTCT+CGG - chr5_3:52883270-52883289 None:intergenic 35.0%
TTCCAGTATGTAACTGAACT+TGG + chr5_3:52883367-52883386 Msa0817550:intron 35.0%
TCCAGTATGTAACTGAACTT+GGG + chr5_3:52883368-52883387 Msa0817550:intron 35.0%
AACTCTGCAACTAAGGTTAA+GGG - chr5_3:52883568-52883587 None:intergenic 35.0%
TAACTCTGCAACTAAGGTTA+AGG - chr5_3:52883569-52883588 None:intergenic 35.0%
!! TGAAGTGTTTCCCTTTTAAC+AGG - chr5_3:52883658-52883677 None:intergenic 35.0%
! ATGACTTTTGATAAGTGGCA+AGG - chr5_3:52883704-52883723 None:intergenic 35.0%
!! TGTTTTTATGAGCAATGGAG+TGG + chr5_3:52883800-52883819 Msa0817550:intron 35.0%
AGCGGACATCATATAAATCA+AGG - chr5_3:52883928-52883947 None:intergenic 35.0%
!! GAAAAGCGTTTCATTTCACA+TGG - chr5_3:52883952-52883971 None:intergenic 35.0%
!!! CTGTTTTTGGTGGACTTATT+TGG + chr5_3:52884053-52884072 Msa0817550:intron 35.0%
AACCAAGCTTCCATTTGTTT+GGG + chr5_3:52884175-52884194 Msa0817550:CDS 35.0%
!! GCTCTAAAAACAGTGTTACA+AGG + chr5_3:52884231-52884250 Msa0817550:CDS 35.0%
! GGAATTTTGCTTTCATCTGA+AGG + chr5_3:52884252-52884271 Msa0817550:CDS 35.0%
GTATGACTATATGAAAAGGG+AGG - chr5_3:52884609-52884628 None:intergenic 35.0%
ACAATGGAAAAAAGCTAGGT+TGG - chr5_3:52884698-52884717 None:intergenic 35.0%
ATCACAAGAACCTAGAACTA+AGG + chr5_3:52884983-52885002 Msa0817550:intron 35.0%
AGTATTCTTTGTCCAAAAGC+CGG + chr5_3:52885069-52885088 Msa0817550:intron 35.0%
ACAAAAAAAATTGCAGCAGC+CGG - chr5_3:52885091-52885110 None:intergenic 35.0%
TCATACACCTATTCTAGATC+AGG + chr5_3:52885214-52885233 Msa0817550:intron 35.0%
CACTATAAAGTACAACTCCA+AGG - chr5_3:52885493-52885512 None:intergenic 35.0%
! GAATCACTTGCTTCTCTTTT+TGG - chr5_3:52885519-52885538 None:intergenic 35.0%
TGTTCAGAATCAGGATGTTA+CGG + chr5_3:52885609-52885628 Msa0817550:three_prime_UTR 35.0%
TCAATAAGGCTTTCTATGTG+GGG - chr5_3:52885658-52885677 None:intergenic 35.0%
CTTCAATAAGGCTTTCTATG+TGG - chr5_3:52885660-52885679 None:intergenic 35.0%
!! CACATAGAAAGCCTTATTGA+AGG + chr5_3:52885658-52885677 Msa0817550:three_prime_UTR 35.0%
!! CATAGAAAGCCTTATTGAAG+GGG + chr5_3:52885660-52885679 Msa0817550:three_prime_UTR 35.0%
CTGGACAGTTGCTAATATAA+TGG - chr5_3:52885689-52885708 None:intergenic 35.0%
ATCATTCACTTACTGGAACT+TGG - chr5_3:52885727-52885746 None:intergenic 35.0%
TACAGAGATCATTCACTTAC+TGG - chr5_3:52885734-52885753 None:intergenic 35.0%
GTGGTATATAGTACCCAATT+AGG + chr5_3:52885893-52885912 Msa0817550:three_prime_UTR 35.0%
TAAAACTGCACTGCCTAATT+GGG - chr5_3:52885909-52885928 None:intergenic 35.0%
ATAAAACTGCACTGCCTAAT+TGG - chr5_3:52885910-52885929 None:intergenic 35.0%
! AATTAGGCAGTGCAGTTTTA+TGG + chr5_3:52885909-52885928 Msa0817550:three_prime_UTR 35.0%
!! TTGAAGGTGTCAAGAAAAGG+AGG - chr5_3:52881817-52881836 None:intergenic 40.0%
!! GTGTTGAAGGTGTCAAGAAA+AGG - chr5_3:52881820-52881839 None:intergenic 40.0%
TGAGTGAAGGAAAGGTAAAC+GGG - chr5_3:52881943-52881962 None:intergenic 40.0%
!! AGAGGAATGGGTTTGTTAGA+AGG - chr5_3:52882030-52882049 None:intergenic 40.0%
CATGGATCTATGAAGAGGAA+TGG - chr5_3:52882043-52882062 None:intergenic 40.0%
GGCTTTGCTTGATTCTTTCA+TGG - chr5_3:52882090-52882109 None:intergenic 40.0%
GGAGATACTTGTTTAGGAGT+AGG - chr5_3:52882160-52882179 None:intergenic 40.0%
GACACATGGTGAGGAAAATT+GGG - chr5_3:52882205-52882224 None:intergenic 40.0%
TGACACATGGTGAGGAAAAT+TGG - chr5_3:52882206-52882225 None:intergenic 40.0%
GATTGCTACGTAGCTGAATA+AGG - chr5_3:52882243-52882262 None:intergenic 40.0%
AGCAATCGCTTGGTTCAAAA+TGG + chr5_3:52882256-52882275 Msa0817550:CDS 40.0%
!!! TACTACGCCGTTTTTTACTG+CGG + chr5_3:52882415-52882434 Msa0817550:CDS 40.0%
!! ACTGGTGTTATCATTGCTAG+TGG + chr5_3:52882506-52882525 Msa0817550:CDS 40.0%
!! CTGGTGTTATCATTGCTAGT+GGG + chr5_3:52882507-52882526 Msa0817550:CDS 40.0%
!! TGGTGTTATCATTGCTAGTG+GGG + chr5_3:52882508-52882527 Msa0817550:CDS 40.0%
TGTCGGTGATCACATATTGT+CGG + chr5_3:52882676-52882695 Msa0817550:intron 40.0%
!! AGGGGTATGGGAAATGTTTT+TGG + chr5_3:52882724-52882743 Msa0817550:intron 40.0%
CTGATTTACAAGGACCCTTT+AGG - chr5_3:52883013-52883032 None:intergenic 40.0%
TTACCAATGTGTGTGAACCT+CGG + chr5_3:52883048-52883067 Msa0817550:intron 40.0%
CCAGTATGTAACTGAACTTG+GGG + chr5_3:52883369-52883388 Msa0817550:intron 40.0%
GGTATTCAGAAGCTAGATCA+AGG + chr5_3:52883462-52883481 Msa0817550:intron 40.0%
AAAGTCCAAGACCGCAATTT+GGG - chr5_3:52883611-52883630 None:intergenic 40.0%
GAGCTAGACTCCTGTTAAAA+GGG + chr5_3:52883645-52883664 Msa0817550:intron 40.0%
!! CTTGTGCCGATTCTAACTAT+TGG + chr5_3:52883746-52883765 Msa0817550:intron 40.0%
! TGTGTGGTGTTCTCTGTTTT+TGG + chr5_3:52884040-52884059 Msa0817550:intron 40.0%
GAACCAAGCTTCCATTTGTT+TGG + chr5_3:52884174-52884193 Msa0817550:CDS 40.0%
AACCCAAACAAATGGAAGCT+TGG - chr5_3:52884180-52884199 None:intergenic 40.0%
AATATGTGTTGCAGCTACAG+CGG + chr5_3:52884203-52884222 Msa0817550:CDS 40.0%
! TGACATCCTTGTTGTGTCTT+AGG + chr5_3:52884350-52884369 Msa0817550:intron 40.0%
! GACATCCTTGTTGTGTCTTA+GGG + chr5_3:52884351-52884370 Msa0817550:intron 40.0%
TTGGAGCCATGTAAAGTAGA+AGG - chr5_3:52884396-52884415 None:intergenic 40.0%
TCTACTTTACATGGCTCCAA+TGG + chr5_3:52884396-52884415 Msa0817550:CDS 40.0%
AGAAGGAAAACAACAGCCAT+TGG - chr5_3:52884415-52884434 None:intergenic 40.0%
TATAGAGTGTAGCAGGAAGA+AGG - chr5_3:52884432-52884451 None:intergenic 40.0%
TCTTCCTGCTACACTCTATA+TGG + chr5_3:52884432-52884451 Msa0817550:CDS 40.0%
TCTTCCATATAGAGTGTAGC+AGG - chr5_3:52884439-52884458 None:intergenic 40.0%
TGAATATACTGCCCTACTAC+AGG - chr5_3:52884944-52884963 None:intergenic 40.0%
TACTGATAGCAACTCTACGT+CGG - chr5_3:52885053-52885072 None:intergenic 40.0%
! GGATGAGCGAGTAGATATTT+TGG + chr5_3:52885265-52885284 Msa0817550:intron 40.0%
TAGGTACTTGGGAATGCTAA+AGG + chr5_3:52885386-52885405 Msa0817550:intron 40.0%
AGGTACTTGGGAATGCTAAA+GGG + chr5_3:52885387-52885406 Msa0817550:intron 40.0%
TCATTCCAGTGACTGAAACT+GGG - chr5_3:52885451-52885470 None:intergenic 40.0%
ATCATTCCAGTGACTGAAAC+TGG - chr5_3:52885452-52885471 None:intergenic 40.0%
AGTTTCAGTCACTGGAATGA+TGG + chr5_3:52885451-52885470 Msa0817550:CDS 40.0%
GTTTCAGTCACTGGAATGAT+GGG + chr5_3:52885452-52885471 Msa0817550:CDS 40.0%
TAATGGGAACCCCTTCAATA+AGG - chr5_3:52885672-52885691 None:intergenic 40.0%
AACTGTCCAGAAATAGCTCA+TGG + chr5_3:52885699-52885718 Msa0817550:three_prime_UTR 40.0%
! TTGGTACCATGAGCTATTTC+TGG - chr5_3:52885708-52885727 None:intergenic 40.0%
TCTCTGTAGTATACCCATGT+TGG + chr5_3:52885746-52885765 Msa0817550:three_prime_UTR 40.0%
ATTCCTCAGTATGCCAACAT+GGG - chr5_3:52885762-52885781 None:intergenic 40.0%
AACGGGAACGCGTATACAAA+CGG - chr5_3:52881926-52881945 None:intergenic 45.0%
GCATGGTACTCATCCAACAT+AGG + chr5_3:52882131-52882150 Msa0817550:CDS 45.0%
TAGGAGTAGGACTCCTATGT+TGG - chr5_3:52882147-52882166 None:intergenic 45.0%
ACATGCTGTCATGTGACACA+TGG - chr5_3:52882219-52882238 None:intergenic 45.0%
CGAGAACGCATGAATTGCAT+TGG - chr5_3:52882284-52882303 None:intergenic 45.0%
TGCTATGACGCTCAAAAGAG+AGG + chr5_3:52882448-52882467 Msa0817550:CDS 45.0%
GCTCTTGTTCCTGTTGTTAC+TGG + chr5_3:52882488-52882507 Msa0817550:CDS 45.0%
ATACAGACACAGACACTGCA+TGG + chr5_3:52883126-52883145 Msa0817550:intron 45.0%
!! TGTTGGTGTCGTGTCAGTAT+CGG + chr5_3:52883209-52883228 Msa0817550:intron 45.0%
! TTCTCGGATTAGGCGTGTTT+CGG - chr5_3:52883254-52883273 None:intergenic 45.0%
GCACAGACATTTCTCGGATT+AGG - chr5_3:52883264-52883283 None:intergenic 45.0%
!! CATGTATACGGTGTTGACGT+TGG + chr5_3:52883295-52883314 Msa0817550:intron 45.0%
CCCCAAGTTCAGTTACATAC+TGG - chr5_3:52883372-52883391 None:intergenic 45.0%
CGTCATGATCCTTCAAAGTG+CGG + chr5_3:52883514-52883533 Msa0817550:intron 45.0%
TCGATGTTGTGCCCAAATTG+CGG + chr5_3:52883597-52883616 Msa0817550:intron 45.0%
CAAAGTCCAAGACCGCAATT+TGG - chr5_3:52883612-52883631 None:intergenic 45.0%
GGAGCTAGACTCCTGTTAAA+AGG + chr5_3:52883644-52883663 Msa0817550:intron 45.0%
CGTTTCATTTCACATGGCAG+CGG - chr5_3:52883946-52883965 None:intergenic 45.0%
!!! GTGGTGTTCTCTGTTTTTGG+TGG + chr5_3:52884043-52884062 Msa0817550:intron 45.0%
! GAAGGGTATGTATGAGTAGC+AGG + chr5_3:52884270-52884289 Msa0817550:intron 45.0%
CTTCTCCCTAAGACACAACA+AGG - chr5_3:52884359-52884378 None:intergenic 45.0%
AAATGTGATCGGCATCACGT+TGG + chr5_3:52884459-52884478 Msa0817550:CDS 45.0%
! AAAAGGGAGGCATACCTGAA+GGG - chr5_3:52884596-52884615 None:intergenic 45.0%
CAACTAAAAAGACAGCAGGC+AGG - chr5_3:52884673-52884692 None:intergenic 45.0%
!! CTGCCTGCTGTCTTTTTAGT+TGG + chr5_3:52884671-52884690 Msa0817550:intron 45.0%
GGACCAACTAAAAAGACAGC+AGG - chr5_3:52884677-52884696 None:intergenic 45.0%
GGTACTTGGGAATGCTAAAG+GGG + chr5_3:52885388-52885407 Msa0817550:intron 45.0%
AGAAACCCAGTTTCAGTCAC+TGG + chr5_3:52885443-52885462 Msa0817550:CDS 45.0%
GGTTATTCACTCACAGTCCT+TGG + chr5_3:52885473-52885492 Msa0817550:CDS 45.0%
ATACCCATGTTGGCATACTG+AGG + chr5_3:52885756-52885775 Msa0817550:three_prime_UTR 45.0%
CATTCCTCAGTATGCCAACA+TGG - chr5_3:52885763-52885782 None:intergenic 45.0%
!! GCAGTGCAGTTTTATGGTCT+GGG + chr5_3:52885915-52885934 Msa0817550:three_prime_UTR 45.0%
!! CAGTGCAGTTTTATGGTCTG+GGG + chr5_3:52885916-52885935 Msa0817550:three_prime_UTR 45.0%
ACGGGAACGCGTATACAAAC+GGG - chr5_3:52881925-52881944 None:intergenic 50.0%
CTGTCATGTGACACATGGTG+AGG - chr5_3:52882214-52882233 None:intergenic 50.0%
TCAGCTACGTAGCAATCGCT+TGG + chr5_3:52882246-52882265 Msa0817550:CDS 50.0%
TGACGCTCAAAAGAGAGGCT+TGG + chr5_3:52882453-52882472 Msa0817550:CDS 50.0%
GATCCGAGGTTCACACACAT+TGG - chr5_3:52883054-52883073 None:intergenic 50.0%
!! GTTGGTGTCGTGTCAGTATC+GGG + chr5_3:52883210-52883229 Msa0817550:intron 50.0%
! GATTAGGCGTGTTTCGGTGT+AGG - chr5_3:52883248-52883267 None:intergenic 50.0%
TGCAGTTCTCCGCACTTTGA+AGG - chr5_3:52883526-52883545 None:intergenic 50.0%
GCAATTTGGGCACAACATCG+AGG - chr5_3:52883598-52883617 None:intergenic 50.0%
TTGTGCCCAAATTGCGGTCT+TGG + chr5_3:52883603-52883622 Msa0817550:intron 50.0%
CAAGTGCGGAATTGAACAGC+AGG - chr5_3:52884519-52884538 None:intergenic 50.0%
! GAAAAGGGAGGCATACCTGA+AGG - chr5_3:52884597-52884616 None:intergenic 50.0%
TGGATCCCTAAGCCTGTAGT+AGG + chr5_3:52884929-52884948 Msa0817550:intron 50.0%
GGATCCCTAAGCCTGTAGTA+GGG + chr5_3:52884930-52884949 Msa0817550:intron 50.0%
ACTGCCCTACTACAGGCTTA+GGG - chr5_3:52884937-52884956 None:intergenic 50.0%
TACTGCCCTACTACAGGCTT+AGG - chr5_3:52884938-52884957 None:intergenic 50.0%
!! AAATTGCAGCAGCCGGCTTT+TGG - chr5_3:52885084-52885103 None:intergenic 50.0%
!! GGCAGTGCAGTTTTATGGTC+TGG + chr5_3:52885914-52885933 Msa0817550:three_prime_UTR 50.0%
GGGAACGCGTATACAAACGG+GGG - chr5_3:52881923-52881942 None:intergenic 55.0%
CGGGAACGCGTATACAAACG+GGG - chr5_3:52881924-52881943 None:intergenic 55.0%
TTTCTCTCTCCTCGGATCCG+AGG - chr5_3:52883068-52883087 None:intergenic 55.0%
TACCAGTGCTCTCACCCTTC+AGG + chr5_3:52884579-52884598 Msa0817550:CDS 55.0%
! TACCTGAAGGGTGAGAGCAC+TGG - chr5_3:52884584-52884603 None:intergenic 55.0%
GTGTGTGAACCTCGGATCCG+AGG + chr5_3:52883056-52883075 Msa0817550:intron 60.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 52881810 52885989 52881810 ID=Msa0817550;Name=Msa0817550
chr5_3 mRNA 52881810 52885989 52881810 ID=Msa0817550-mRNA-1;Parent=Msa0817550;Name=Msa0817550-mRNA-1;_AED=0.02;_eAED=0.02;_QI=279|1|1|1|1|1|4|454|306
chr5_3 exon 52881810 52882529 52881810 ID=Msa0817550-mRNA-1:exon:15878;Parent=Msa0817550-mRNA-1
chr5_3 exon 52884171 52884274 52884171 ID=Msa0817550-mRNA-1:exon:15879;Parent=Msa0817550-mRNA-1
chr5_3 exon 52884372 52884600 52884372 ID=Msa0817550-mRNA-1:exon:15880;Parent=Msa0817550-mRNA-1
chr5_3 exon 52885389 52885989 52885389 ID=Msa0817550-mRNA-1:exon:15881;Parent=Msa0817550-mRNA-1
chr5_3 five_prime_UTR 52881810 52882088 52881810 ID=Msa0817550-mRNA-1:five_prime_utr;Parent=Msa0817550-mRNA-1
chr5_3 CDS 52882089 52882529 52882089 ID=Msa0817550-mRNA-1:cds;Parent=Msa0817550-mRNA-1
chr5_3 CDS 52884171 52884274 52884171 ID=Msa0817550-mRNA-1:cds;Parent=Msa0817550-mRNA-1
chr5_3 CDS 52884372 52884600 52884372 ID=Msa0817550-mRNA-1:cds;Parent=Msa0817550-mRNA-1
chr5_3 CDS 52885389 52885535 52885389 ID=Msa0817550-mRNA-1:cds;Parent=Msa0817550-mRNA-1
chr5_3 three_prime_UTR 52885536 52885989 52885536 ID=Msa0817550-mRNA-1:three_prime_utr;Parent=Msa0817550-mRNA-1
Gene Sequence

>Msa0817550

ATGAAAGAATCAAGCAAAGCCTTCACAATAACATTAATCTCAGCATGGTACTCATCCAACATAGGAGTCCTACTCCTAAACAAGTATCTCCTTTCAAACTACGGTTTCAAATACCCAATTTTCCTCACCATGTGTCACATGACAGCATGTTCCTTATTCAGCTACGTAGCAATCGCTTGGTTCAAAATGGTTCCAATGCAATTCATGCGTTCTCGTCTTCAATTCTTTAAGATCGCTACTCTAAGTTTTATTTTCTGTGTTTCCGTTGTTTTTGGTAATGTTTCGTTACGGTATCTTCCTGTGTCGTTTAATCAAGCTATCGGTGCTACTACGCCGTTTTTTACTGCGGTTTTTGCTTATGCTATGACGCTCAAAAGAGAGGCTTGGCTTACTTATCTTGCTCTTGTTCCTGTTGTTACTGGTGTTATCATTGCTAGTGGGGGTGAACCAAGCTTCCATTTGTTTGGGTTCATAATATGTGTTGCAGCTACAGCGGCACGAGCTCTAAAAACAGTGTTACAAGGAATTTTGCTTTCATCTGAAGGGGAGAAGCTGAATTCTATGAACCTTCTACTTTACATGGCTCCAATGGCTGTTGTTTTCCTTCTTCCTGCTACACTCTATATGGAAGAAAATGTGATCGGCATCACGTTGGCTCTTGCCAGAGATGATATGAAGATCATTTGGTACCTGCTGTTCAATTCCGCACTTGCATATTTTGTCAATCTGACCAATTTTTTGGTCACAAAACATACCAGTGCTCTCACCCTTCAGGTACTTGGGAATGCTAAAGGGGCTGTAGCAGTTGTAGTTTCAATTCTAATATTTAGAAACCCAGTTTCAGTCACTGGAATGATGGGTTATTCACTCACAGTCCTTGGAGTTGTACTTTATAGTGAAGCCAAAAAGAGAAGCAAGTGA
Protein sequence

>Msa0817550

MKESSKAFTITLISAWYSSNIGVLLLNKYLLSNYGFKYPIFLTMCHMTACSLFSYVAIAWFKMVPMQFMRSRLQFFKIATLSFIFCVSVVFGNVSLRYLPVSFNQAIGATTPFFTAVFAYAMTLKREAWLTYLALVPVVTGVIIASGGEPSFHLFGFIICVAATAARALKTVLQGILLSSEGEKLNSMNLLLYMAPMAVVFLLPATLYMEENVIGITLALARDDMKIIWYLLFNSALAYFVNLTNFLVTKHTSALTLQVLGNAKGAVAVVVSILIFRNPVSVTGMMGYSLTVLGVVLYSEAKKRSK*