AlfalfaGEDB | Msa0179100

M. sativa cultivar zhongmu-4 / Msa0179100

KEGG: K01102
GO: -
PFAM: PF00481.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0179100	ACJ84228.1	99.208	379	3	0	1	379	1	379	0.0	771

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0179100	sp\|O81760\|P2C63_ARATH	70.712	379	109	2	1	378	1	378	0.0	549

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0179100	B7FHJ9	99.208	379	3	0	1	379	1	379	0.0	771

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0071480	Msa0179100	0.890703	7.750604e-74	-8.615850e-47
Msa0083670	Msa0179100	0.801530	8.622506e-49	-8.615850e-47
Msa0089850	Msa0179100	0.898570	4.663361e-77	-8.615850e-47
Msa0119440	Msa0179100	0.838810	2.305411e-57	-8.615850e-47
Msa0136280	Msa0179100	0.887151	1.834722e-72	-8.615850e-47
Msa0151220	Msa0179100	0.819152	1.349187e-52	-8.615850e-47
Msa0162690	Msa0179100	0.813286	2.764846e-51	-8.615850e-47
Msa0179100	Msa0187310	0.800349	1.502975e-48	-8.615850e-47
Msa0179100	Msa0194010	0.803505	3.376972e-49	-8.615850e-47
Msa0179100	Msa0213430	0.838822	2.288185e-57	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0179100	MtrunA17_Chr1g0207571	99.208	379	3	0	1	379	1	379	0.0	771
Msa0179100	MtrunA17_Chr1g0213351	58.735	332	127	2	17	340	28	357	2.20e-138	399
Msa0179100	MtrunA17_Chr1g0211251	53.743	374	158	3	2	362	9	380	1.62e-137	397
Msa0179100	MtrunA17_Chr7g0250061	51.459	377	161	3	6	362	1	375	8.29e-135	390
Msa0179100	MtrunA17_Chr8g0371321	55.455	330	137	2	17	338	27	354	4.55e-130	378
Msa0179100	MtrunA17_Chr1g0175381	54.969	322	142	1	18	339	36	354	4.88e-129	375
Msa0179100	MtrunA17_Chr2g0294291	53.538	325	148	2	16	339	30	352	1.33e-123	361
Msa0179100	MtrunA17_Chr7g0263281	54.683	331	140	2	16	338	18	346	2.21e-118	348
Msa0179100	MtrunA17_Chr1g0181901	50.140	357	139	4	20	339	27	381	7.00e-112	332
Msa0179100	MtrunA17_Chr3g0089711	46.875	320	159	5	27	339	33	348	2.84e-94	286

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0179100	AT4G33920.1	70.712	379	109	2	1	378	1	378	0.0	549
Msa0179100	AT4G33920.2	70.169	295	86	2	85	378	2	295	3.01e-147	419
Msa0179100	AT3G51370.1	54.648	355	148	3	1	344	8	360	4.66e-140	404
Msa0179100	AT3G51370.3	54.648	355	148	3	1	344	8	360	4.66e-140	404
Msa0179100	AT5G66080.1	56.196	347	141	2	16	353	28	372	1.10e-139	403
Msa0179100	AT3G12620.2	57.270	337	134	2	17	345	31	365	2.37e-135	392
Msa0179100	AT3G12620.1	57.270	337	134	2	17	345	31	365	2.37e-135	392
Msa0179100	AT4G33920.3	71.053	266	75	2	114	378	1	265	9.38e-134	383
Msa0179100	AT3G55050.1	57.447	329	130	2	17	337	32	358	2.72e-133	387
Msa0179100	AT3G55050.2	57.447	329	130	2	17	337	32	358	2.72e-133	387

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Find 145 sgRNAs with CRISPR-Local

Find 214 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTGCTGGGTGGGCAGG+TGG	0.550770	1_4:-66510853	Msa0179100:three_prime_UTR
AAACAAAAGAGAAGAAGGAA+AGG	0.384883	1_4:-66513472	Msa0179100:five_prime_UTR
AAAGGCGTTTAGTAAGACCG+AGG	0.745268	1_4:-66512495	Msa0179100:CDS
AAATGAAATGGAAAAGTCAG+TGG	0.653608	1_4:+66513396	None:intergenic
AACAAAAGAGAAGAAGGAAA+GGG	0.493048	1_4:-66513471	Msa0179100:five_prime_UTR
AACGGCAATTGAGAAATCAC+CGG	0.616907	1_4:+66513173	None:intergenic
AACTCTAGAGTCACCCAGGT+TGG	0.586854	1_4:+66512364	None:intergenic
AAGAGCATGCTTGGTTCAGT+TGG	0.486918	1_4:-66511232	Msa0179100:CDS
AATCGAAGGGTTCGAAATTG+AGG	0.446755	1_4:+66513311	None:intergenic
AATGAAATGGAAAAGTCAGT+GGG	0.679469	1_4:+66513397	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACAAAAGAGAAGAAGGAA+AGG	-	chr1_4:66510481-66510500	Msa0179100:three_prime_UTR	30.0%
AACAAAAGAGAAGAAGGAAA+GGG	-	chr1_4:66510482-66510501	Msa0179100:three_prime_UTR	30.0%
AATGAAATGGAAAAGTCAGT+GGG	+	chr1_4:66510559-66510578	None:intergenic	30.0%
AAATGAAATGGAAAAGTCAG+TGG	+	chr1_4:66510560-66510579	None:intergenic	30.0%
ATCTATGTATCGAAATCGAA+GGG	+	chr1_4:66510658-66510677	None:intergenic	30.0%
TATCTATGTATCGAAATCGA+AGG	+	chr1_4:66510659-66510678	None:intergenic	30.0%
TGTGTAAATAAGGGAAAAGA+CGG	+	chr1_4:66510922-66510941	None:intergenic	30.0%
CTTTGTTAATAAGAGACCAA+CGG	+	chr1_4:66511810-66511829	None:intergenic	30.0%
TTTCCAAATTGCCGAAAAAT+GGG	+	chr1_4:66512205-66512224	None:intergenic	30.0%
ATTTCCAAATTGCCGAAAAA+TGG	+	chr1_4:66512206-66512225	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_4	gene	66510442	66513533	66510442	ID=Msa0179100;Name=Msa0179100
chr1_4	mRNA	66510442	66513533	66510442	ID=Msa0179100-mRNA-1;Parent=Msa0179100;Name=Msa0179100-mRNA-1;_AED=0.03;_eAED=0.03;_QI=241\|1\|1\|1\|1\|1\|4\|786\|379
chr1_4	exon	66510442	66511497	66510442	ID=Msa0179100-mRNA-1:exon:21815;Parent=Msa0179100-mRNA-1
chr1_4	exon	66511591	66511827	66511591	ID=Msa0179100-mRNA-1:exon:21814;Parent=Msa0179100-mRNA-1
chr1_4	exon	66512187	66512560	66512187	ID=Msa0179100-mRNA-1:exon:21813;Parent=Msa0179100-mRNA-1
chr1_4	exon	66513034	66513533	66513034	ID=Msa0179100-mRNA-1:exon:21812;Parent=Msa0179100-mRNA-1
chr1_4	five_prime_UTR	66513293	66513533	66513293	ID=Msa0179100-mRNA-1:five_prime_utr;Parent=Msa0179100-mRNA-1
chr1_4	CDS	66513034	66513292	66513034	ID=Msa0179100-mRNA-1:cds;Parent=Msa0179100-mRNA-1
chr1_4	CDS	66512187	66512560	66512187	ID=Msa0179100-mRNA-1:cds;Parent=Msa0179100-mRNA-1
chr1_4	CDS	66511591	66511827	66511591	ID=Msa0179100-mRNA-1:cds;Parent=Msa0179100-mRNA-1
chr1_4	CDS	66511228	66511497	66511228	ID=Msa0179100-mRNA-1:cds;Parent=Msa0179100-mRNA-1
chr1_4	three_prime_UTR	66510442	66511227	66510442	ID=Msa0179100-mRNA-1:three_prime_utr;Parent=Msa0179100-mRNA-1

Gene Sequence

>Msa0179100

ATGCTGCGTTTGTGCTTAAGCCCTCTTGATTTTTGCTTCCGTCGCCGTGGTGCCTCTGACTTCCTCCTCTGGCACACAGACTTGAAACCTCACGCCTCCGGTGATTTCTCAATTGCCGTTGCTCAGGCTAATTACTCTCTTGAAGATCAAAGTCAAGTCTTCACCTCTCCTTCCGCCACCTATGTCGGTGTTTACGATGGTCACGGTGGTCCTGAAGCTTCTAGATTTGTCAACAACCGTCTTTTCCCTTATTTACACAAATTTGCCTCTGAACAAGGGGGATTGTCAGCAGATGTGATAAAAAAGGCGTTTAGTAAGACCGAGGAGGACTTTTTGCATTTGGTTAAGTTGTCGTTGCCAATTAGTCCTCAGATTGCGTCTGTGGGATCATGTTGTCTTCTTGGTGCAATTTCTAACAATGTGCTGTATGTTGCCAACCTGGGTGACTCTAGAGTTGTTCTTGGTAGGAAGTATCTTGAGAACAAGAATTCTTCTGTGGAGGCTGTGCGCTTGTCAACGGATCATAATGTAGCTGATGAGGAAGTGAGGAGAGAAGTTGAAGCTCTCCACCCTGATGATTCACACATTGTGGTTTATAGCCGTGGTGTTTGGAGGATCAAGGGCATCATACAGGTGTCTAGATCTATTGGTGATGTATATTTGAAGAGACCAGATTTCTACAGAGATCCCATTTTTCGGCAATTTGGAAATCCTATTCCTTTGAAGCGTCCAGTAATGACAGCTGAACCATCAATCATCATTAGGGAGCTTGAGTCAGATGATTTATTCTTAATATTTGCATCAGATGGCCTTTGGGAACAATTAAGTGATGAAGCAGCAGTTGATATTGTTTTCAAATATCCAAGAGCTGGAATTGCCAAGAGACTAGTAAGAGCTGCTCTTCAGGAAGCTGCAAAGAAAAGAGAGATGAGATATGCTGACATAAAGAAAATTGACAAAGGAATTAGAAGACACTTCCATGACGATATCACTGTTATCGTGATCTATCTTGATCAGCATGGAAGCTCTTCTAGTGGTGAGTTTAAGCAAACTGCTGTTGGCTATACAACTGCCCCTGTTGATATATTTTCTCTAAATGCCGATGAATCTGAGAAGAGCATGCTTGGTTCAGTTGGCTAA

Protein sequence

>Msa0179100

MLRLCLSPLDFCFRRRGASDFLLWHTDLKPHASGDFSIAVAQANYSLEDQSQVFTSPSATYVGVYDGHGGPEASRFVNNRLFPYLHKFASEQGGLSADVIKKAFSKTEEDFLHLVKLSLPISPQIASVGSCCLLGAISNNVLYVANLGDSRVVLGRKYLENKNSSVEAVRLSTDHNVADEEVRREVEALHPDDSHIVVYSRGVWRIKGIIQVSRSIGDVYLKRPDFYRDPIFRQFGNPIPLKRPVMTAEPSIIIRELESDDLFLIFASDGLWEQLSDEAAVDIVFKYPRAGIAKRLVRAALQEAAKKREMRYADIKKIDKGIRRHFHDDITVIVIYLDQHGSSSSGEFKQTAVGYTTAPVDIFSLNADESEKSMLGSVG*