Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0818120 | XP_024639020.2 | 95.009 | 581 | 29 | 0 | 1 | 581 | 1 | 581 | 0.0 | 1151 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0818120 | sp|Q8GV43|PLCD6_ARATH | 59.967 | 607 | 202 | 8 | 1 | 581 | 21 | 612 | 0.0 | 726 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0818120 | G7KH09 | 95.009 | 581 | 29 | 0 | 1 | 581 | 1 | 581 | 0.0 | 1151 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0818120 | Msa0880140 | 0.807435 | 5.062478e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0818120 | MtrunA17_Chr5g0437061 | 93.686 | 491 | 10 | 1 | 112 | 581 | 1 | 491 | 0.0 | 951 |
| Msa0818120 | MtrunA17_Chr5g0430181 | 59.359 | 593 | 220 | 6 | 4 | 582 | 9 | 594 | 0.0 | 716 |
| Msa0818120 | MtrunA17_Chr5g0437041 | 61.168 | 582 | 211 | 5 | 15 | 581 | 25 | 606 | 0.0 | 712 |
| Msa0818120 | MtrunA17_Chr5g0437081 | 57.770 | 592 | 222 | 9 | 4 | 581 | 11 | 588 | 0.0 | 685 |
| Msa0818120 | MtrunA17_Chr3g0113471 | 60.315 | 572 | 212 | 7 | 18 | 581 | 23 | 587 | 0.0 | 676 |
| Msa0818120 | MtrunA17_Chr3g0113521 | 60.035 | 568 | 218 | 5 | 18 | 581 | 24 | 586 | 0.0 | 675 |
| Msa0818120 | MtrunA17_Chr3g0113531 | 59.729 | 591 | 214 | 10 | 4 | 582 | 15 | 593 | 0.0 | 655 |
| Msa0818120 | MtrunA17_Chr3g0112551 | 59.343 | 578 | 202 | 8 | 19 | 582 | 14 | 572 | 0.0 | 640 |
| Msa0818120 | MtrunA17_Chr5g0430191 | 51.546 | 582 | 244 | 11 | 4 | 581 | 25 | 572 | 0.0 | 551 |
| Msa0818120 | MtrunA17_Chr5g0437051 | 82.407 | 108 | 19 | 0 | 1 | 108 | 1 | 108 | 1.01e-53 | 178 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0818120 | AT2G40116.1 | 59.967 | 607 | 202 | 8 | 1 | 581 | 21 | 612 | 0.0 | 726 |
| Msa0818120 | AT3G08510.2 | 56.388 | 587 | 232 | 10 | 4 | 582 | 11 | 581 | 0.0 | 654 |
| Msa0818120 | AT3G08510.1 | 56.388 | 587 | 232 | 10 | 4 | 582 | 11 | 581 | 0.0 | 654 |
| Msa0818120 | AT5G58700.3 | 55.369 | 596 | 234 | 9 | 5 | 582 | 16 | 597 | 0.0 | 647 |
| Msa0818120 | AT5G58700.1 | 55.369 | 596 | 234 | 9 | 5 | 582 | 16 | 597 | 0.0 | 647 |
| Msa0818120 | AT5G58690.2 | 55.654 | 566 | 238 | 4 | 18 | 582 | 6 | 559 | 0.0 | 637 |
| Msa0818120 | AT5G58690.3 | 55.654 | 566 | 238 | 4 | 18 | 582 | 25 | 578 | 0.0 | 637 |
| Msa0818120 | AT5G58690.1 | 55.654 | 566 | 238 | 4 | 18 | 582 | 25 | 578 | 0.0 | 637 |
| Msa0818120 | AT3G55940.1 | 55.219 | 594 | 231 | 13 | 4 | 582 | 11 | 584 | 0.0 | 624 |
| Msa0818120 | AT5G58700.2 | 60.852 | 493 | 168 | 6 | 108 | 582 | 4 | 489 | 0.0 | 602 |
| Msa0818120 | AT3G08510.4 | 52.981 | 587 | 223 | 11 | 4 | 582 | 11 | 552 | 0.0 | 593 |
| Msa0818120 | AT3G08510.3 | 52.981 | 587 | 223 | 11 | 4 | 582 | 11 | 552 | 0.0 | 593 |
| Msa0818120 | AT5G58670.1 | 49.313 | 582 | 254 | 12 | 4 | 579 | 10 | 556 | 0.0 | 537 |
| Msa0818120 | AT4G38530.1 | 48.621 | 580 | 262 | 9 | 4 | 579 | 8 | 555 | 0.0 | 524 |
| Msa0818120 | AT3G47290.1 | 42.137 | 496 | 241 | 9 | 86 | 581 | 81 | 530 | 2.11e-127 | 384 |
| Msa0818120 | AT3G47290.2 | 41.975 | 486 | 236 | 9 | 86 | 571 | 81 | 520 | 7.43e-123 | 374 |
| Msa0818120 | AT3G47220.1 | 41.366 | 527 | 243 | 14 | 63 | 581 | 62 | 530 | 3.50e-120 | 366 |
Find 139 sgRNAs with CRISPR-Local
Find 302 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTGATTCCAAACAATTTA+AGG | 0.066978 | 5_3:+53591999 | Msa0818120:CDS |
| AAGATAATTGGTTTCCAATT+TGG | 0.094773 | 5_3:+53593418 | Msa0818120:CDS |
| TAGATGACAACTCAAATATT+TGG | 0.188759 | 5_3:+53591874 | Msa0818120:intron |
| GGGTTATAGAACTCGATTTA+TGG | 0.199389 | 5_3:+53591272 | Msa0818120:CDS |
| ATGTCATCTTTAGCTGAATT+TGG | 0.211363 | 5_3:-53591295 | None:intergenic |
| GTAATTAGAAACAGAATTAA+AGG | 0.211766 | 5_3:+53593820 | Msa0818120:three_prime_UTR |
| GAAAAGGCTTCTGCTTCTTA+TGG | 0.244392 | 5_3:+53592375 | Msa0818120:CDS |
| CCAGTTTCTGAGCTGAAATC+TGG | 0.244397 | 5_3:+53593552 | Msa0818120:CDS |
| CCAAAGTAAATAAAGATAAT+TGG | 0.252797 | 5_3:+53593406 | Msa0818120:CDS |
| TCTTCTAAAGTTATAATAAC+TGG | 0.257622 | 5_3:-53591534 | None:intergenic |
| AGATAATTGGTTTCCAATTT+GGG | 0.258498 | 5_3:+53593419 | Msa0818120:CDS |
| TTGTTCTTTGATGAATTTAA+TGG | 0.263253 | 5_3:+53589512 | Msa0818120:CDS |
| TTACACAGAAGAATATTCTT+AGG | 0.267440 | 5_3:+53592656 | Msa0818120:CDS |
| AACTGCTTGAAACAAAATTA+TGG | 0.268702 | 5_3:+53593737 | Msa0818120:three_prime_UTR |
| AATGTTGGTGATGGCATTTC+CGG | 0.280602 | 5_3:+53589449 | Msa0818120:CDS |
| ACTAGTATCCTTAAATTGTT+TGG | 0.290682 | 5_3:-53592007 | None:intergenic |
| ACTATAGGTGAAAGTGTATA+TGG | 0.297386 | 5_3:+53593110 | Msa0818120:intron |
| AAGCATGAAAAGGATGATTT+TGG | 0.298944 | 5_3:+53593513 | Msa0818120:CDS |
| CTTATGGAGCTGATATTGTT+AGG | 0.316140 | 5_3:+53592391 | Msa0818120:CDS |
| TCAAACTCTTCATCCCAAAT+TGG | 0.323798 | 5_3:-53593432 | None:intergenic |
| GATGACATCGTTGTAGTTCA+TGG | 0.329751 | 5_3:+53591310 | Msa0818120:CDS |
| GGAAACAAATTTCAATGATT+AGG | 0.330328 | 5_3:-53593874 | None:intergenic |
| GTAAACCCAAGGGTCATATA+AGG | 0.330467 | 5_3:+53592295 | Msa0818120:CDS |
| ATATTACAGGTTTGTATTGT+TGG | 0.331489 | 5_3:+53593354 | Msa0818120:intron |
| ATATGAAATAATGTGATAAT+GGG | 0.337203 | 5_3:-53591159 | None:intergenic |
| TATATGAAATAATGTGATAA+TGG | 0.337822 | 5_3:-53591160 | None:intergenic |
| TCGAATTACAGGCCACATAT+AGG | 0.338219 | 5_3:+53592709 | Msa0818120:CDS |
| TGTGGTGCACTTTGCTGGTC+TGG | 0.340255 | 5_3:-53592243 | None:intergenic |
| GGACACAATTCCTACCTAAC+TGG | 0.346571 | 5_3:+53591187 | Msa0818120:CDS |
| GTGTCACCTCTTCGAATTAC+AGG | 0.354045 | 5_3:+53592698 | Msa0818120:CDS |
| TGTACTGTGGTGCACTTTGC+TGG | 0.355129 | 5_3:-53592248 | None:intergenic |
| TGATCCGCCTTTGGCAAATT+CGG | 0.367147 | 5_3:-53589309 | None:intergenic |
| CAAGGAATGTTTAGAGCTAA+TGG | 0.369412 | 5_3:+53592919 | Msa0818120:CDS |
| TCACATTATTTCATATATAC+AGG | 0.372971 | 5_3:+53591166 | Msa0818120:CDS |
| CCAATTATCTTTATTTACTT+TGG | 0.376670 | 5_3:-53593406 | None:intergenic |
| TTGGAATCAAGATATTCTTT+TGG | 0.385129 | 5_3:-53591988 | None:intergenic |
| TAGTGACAGTGAAAGGGAAA+TGG | 0.391948 | 5_3:+53592026 | Msa0818120:CDS |
| CGAATTACAGGCCACATATA+GGG | 0.392978 | 5_3:+53592710 | Msa0818120:CDS |
| CCAGATTTCAGCTCAGAAAC+TGG | 0.394376 | 5_3:-53593552 | None:intergenic |
| GCAACTTTAGCTTGAAGATC+TGG | 0.397316 | 5_3:-53591567 | None:intergenic |
| AAATCATCTTCGGTGCATTT+CGG | 0.399407 | 5_3:-53589383 | None:intergenic |
| GTGGTCCCTTATATGACCCT+TGG | 0.403318 | 5_3:-53592301 | None:intergenic |
| GTGAAAGTGTATATGGGAAA+TGG | 0.404252 | 5_3:+53593117 | Msa0818120:CDS |
| GGTTATATTTACTTACCTTC+AGG | 0.408305 | 5_3:+53593768 | Msa0818120:three_prime_UTR |
| TAGGAATATTTGTGTCCATA+TGG | 0.411214 | 5_3:-53593676 | None:intergenic |
| TGGTGGTAATTGTTCTTGTT+CGG | 0.417594 | 5_3:-53589264 | None:intergenic |
| TGGTCCCTTATATGACCCTT+GGG | 0.421194 | 5_3:-53592300 | None:intergenic |
| ACCTTCAATGTCTTCTTCAC+TGG | 0.424633 | 5_3:-53593024 | None:intergenic |
| TGCTTAGCTGATTCCCAGTT+AGG | 0.426040 | 5_3:-53591201 | None:intergenic |
| TCACCAGCCCTTAGTGTTGA+AGG | 0.428432 | 5_3:+53592066 | Msa0818120:CDS |
| TATAAAATTACAACAATCCT+AGG | 0.432491 | 5_3:-53593695 | None:intergenic |
| GAGGTGACACGTGTTCCCTT+TGG | 0.434454 | 5_3:-53592685 | None:intergenic |
| AGTTCCTTTATATGATCAAA+AGG | 0.434903 | 5_3:+53593584 | Msa0818120:CDS |
| ATTACCACCATCTGATGTTA+AGG | 0.436781 | 5_3:+53589277 | Msa0818120:CDS |
| AGGGACCACCTAAAAGTTGC+TGG | 0.439264 | 5_3:+53592315 | Msa0818120:CDS |
| TGAAAGTGTATATGGGAAAT+GGG | 0.447409 | 5_3:+53593118 | Msa0818120:CDS |
| AGACAATGCTGATCCGCCTT+TGG | 0.450899 | 5_3:-53589318 | None:intergenic |
| TAATTAGAAACAGAATTAAA+GGG | 0.452934 | 5_3:+53593821 | Msa0818120:three_prime_UTR |
| TACACAGAAGAATATTCTTA+GGG | 0.456599 | 5_3:+53592657 | Msa0818120:CDS |
| GAGTGAGCAAGAACTTGAAA+AGG | 0.463050 | 5_3:+53592359 | Msa0818120:CDS |
| ATCCTAAGCAAAGCAAGCTC+TGG | 0.464460 | 5_3:-53593471 | None:intergenic |
| AACAAATTTCAATGATTAGG+AGG | 0.468252 | 5_3:-53593871 | None:intergenic |
| TTTCATCACCTTCAACACTA+AGG | 0.469002 | 5_3:-53592074 | None:intergenic |
| CCACATATAGGGTGGATGTA+TGG | 0.474015 | 5_3:+53592721 | Msa0818120:CDS |
| AGAATATGATAAGCATGAAA+AGG | 0.482485 | 5_3:+53593503 | Msa0818120:CDS |
| GGTTTGTATTGTTGGAGTAC+CGG | 0.483392 | 5_3:+53593362 | Msa0818120:intron |
| CTTGCCTTAGCTAAGCCATA+TGG | 0.484783 | 5_3:+53593661 | Msa0818120:three_prime_UTR |
| AGGATACTAGTGACAGTGAA+AGG | 0.487643 | 5_3:+53592019 | Msa0818120:CDS |
| CTCACCTTTGTGTAAAAGTC+CGG | 0.488198 | 5_3:-53593186 | None:intergenic |
| AAGCATTGGACAAGTGAGAC+AGG | 0.496083 | 5_3:-53591471 | None:intergenic |
| TTCAAAATGCAATGCAATCG+CGG | 0.502838 | 5_3:+53589417 | Msa0818120:CDS |
| GACCCTTGGGTTTACCAGCA+TGG | 0.503559 | 5_3:-53592287 | None:intergenic |
| GCACCGAAGATGATTTGAAC+CGG | 0.504406 | 5_3:+53589390 | Msa0818120:CDS |
| AGTGACAGTGAAAGGGAAAT+GGG | 0.506258 | 5_3:+53592027 | Msa0818120:CDS |
| AGCGTTGCAACGAGGTGTGC+GGG | 0.507339 | 5_3:+53591252 | Msa0818120:CDS |
| GAAAGGGAAATGGGTGAAGA+AGG | 0.511247 | 5_3:+53592036 | Msa0818120:CDS |
| TTCCAGAGCTTGCTTTGCTT+AGG | 0.513289 | 5_3:+53593469 | Msa0818120:CDS |
| GGTGAGTCCCTCTCTGGTAC+CGG | 0.514786 | 5_3:-53589468 | None:intergenic |
| CTTTGATACATTCTCTCCTC+CGG | 0.523516 | 5_3:+53593167 | Msa0818120:CDS |
| TACGAGGGTGAGTCCCTCTC+TGG | 0.525438 | 5_3:-53589474 | None:intergenic |
| TAAACCCAAGGGTCATATAA+GGG | 0.526059 | 5_3:+53592296 | Msa0818120:CDS |
| TTTAGAGCTAATGGAGGGTG+TGG | 0.528902 | 5_3:+53592928 | Msa0818120:CDS |
| GATGGTCGCATTTAACATGC+AGG | 0.534857 | 5_3:+53592750 | Msa0818120:CDS |
| CTATAGGTGAAAGTGTATAT+GGG | 0.536460 | 5_3:+53593111 | Msa0818120:intron |
| TAAGTAAATATAACCTCTGA+AGG | 0.537107 | 5_3:-53593760 | None:intergenic |
| GTTCCTTTATATGATCAAAA+GGG | 0.538505 | 5_3:+53593585 | Msa0818120:CDS |
| ATATGGACACAAATATTCCT+AGG | 0.541413 | 5_3:+53593678 | Msa0818120:three_prime_UTR |
| GCAAGCTCTGGAACACTCAA+AGG | 0.542293 | 5_3:-53593459 | None:intergenic |
| GCCAGTGAAGAAGACATTGA+AGG | 0.544695 | 5_3:+53593023 | Msa0818120:CDS |
| GATCCGGTTCAAATCATCTT+CGG | 0.544859 | 5_3:-53589393 | None:intergenic |
| CTTCTAAAGTTATAATAACT+GGG | 0.545456 | 5_3:-53591533 | None:intergenic |
| GGATACTAGTGACAGTGAAA+GGG | 0.545725 | 5_3:+53592020 | Msa0818120:CDS |
| TTCTTATTGACTTTATCAGC+CGG | 0.547660 | 5_3:-53593381 | None:intergenic |
| TTCATCACCTTCAACACTAA+GGG | 0.549858 | 5_3:-53592073 | None:intergenic |
| CATTGTCTGCTGATCAGCTA+CGG | 0.552177 | 5_3:+53589333 | Msa0818120:CDS |
| TAATGGTCCCATAAAATCAC+AGG | 0.553214 | 5_3:+53589529 | Msa0818120:CDS |
| ACAAATTTCAATGATTAGGA+GGG | 0.553769 | 5_3:-53593870 | None:intergenic |
| AACAAAATTATGGCCTTCAG+AGG | 0.555840 | 5_3:+53593747 | Msa0818120:three_prime_UTR |
| ATTCTTAGGGTGTATCCAAA+GGG | 0.557134 | 5_3:+53592670 | Msa0818120:CDS |
| CCATACATCCACCCTATATG+TGG | 0.558249 | 5_3:-53592721 | None:intergenic |
| TAGCTGATTCCCAGTTAGGT+AGG | 0.562137 | 5_3:-53591197 | None:intergenic |
| TTCTCCGAATTTGCCAAAGG+CGG | 0.566679 | 5_3:+53589305 | Msa0818120:CDS |
| GGAAGTGATCTTGACGAGGA+AGG | 0.567762 | 5_3:+53592198 | Msa0818120:CDS |
| CGTATGATTACAATCCATGC+TGG | 0.567959 | 5_3:+53592273 | Msa0818120:CDS |
| AAAGCTTCCTTAACATCAGA+TGG | 0.571579 | 5_3:-53589284 | None:intergenic |
| GTGTCCATATGGCTTAGCTA+AGG | 0.575281 | 5_3:-53593665 | None:intergenic |
| TCACCTTCAACACTAAGGGC+TGG | 0.576383 | 5_3:-53592069 | None:intergenic |
| GGCATTTCCGGTACCAGAGA+GGG | 0.576754 | 5_3:+53589461 | Msa0818120:CDS |
| TTTGTCATAGTTTCTGTATG+CGG | 0.578303 | 5_3:-53591913 | None:intergenic |
| TATTCTTAGGGTGTATCCAA+AGG | 0.578510 | 5_3:+53592669 | Msa0818120:CDS |
| GTGGATGTATGGAGCTCAGA+TGG | 0.580787 | 5_3:+53592732 | Msa0818120:CDS |
| AAATCACTTTGGTATATGCA+AGG | 0.581641 | 5_3:+53592901 | Msa0818120:CDS |
| TATGAAATAATGTGATAATG+GGG | 0.582251 | 5_3:-53591158 | None:intergenic |
| GGATCAAAACACTCATTGTG+TGG | 0.585108 | 5_3:-53592988 | None:intergenic |
| AGGGGCATGGAAAATCACTT+TGG | 0.590281 | 5_3:+53592890 | Msa0818120:intron |
| GACACAATTCCTACCTAACT+GGG | 0.592692 | 5_3:+53591188 | Msa0818120:CDS |
| GCTTTCTCCGAATTTGCCAA+AGG | 0.594825 | 5_3:+53589302 | Msa0818120:CDS |
| AAGCGTTGCAACGAGGTGTG+CGG | 0.609080 | 5_3:+53591251 | Msa0818120:CDS |
| AAAAGTGATAATGTTGGTGA+TGG | 0.610770 | 5_3:+53589440 | Msa0818120:CDS |
| AATCCATGCTGGTAAACCCA+AGG | 0.614627 | 5_3:+53592284 | Msa0818120:CDS |
| ACATCGTTGTAGTTCATGGA+AGG | 0.619043 | 5_3:+53591314 | Msa0818120:CDS |
| TCGCGGAAAAGTGATAATGT+TGG | 0.619525 | 5_3:+53589434 | Msa0818120:CDS |
| TGATGACTTGTTGATCCTGA+AGG | 0.623937 | 5_3:-53593783 | None:intergenic |
| TCTTCAAGCTAAAGTTGCAG+AGG | 0.637303 | 5_3:+53591572 | Msa0818120:CDS |
| ATAATGGGGCATTCATGTCA+TGG | 0.645153 | 5_3:-53591144 | None:intergenic |
| ATCCAAACTTGACAGTGCAG+TGG | 0.647137 | 5_3:+53592177 | Msa0818120:intron |
| GTAATCATACGTTTGTACTG+TGG | 0.653232 | 5_3:-53592261 | None:intergenic |
| ATGTGGCCTGTAATTCGAAG+AGG | 0.655794 | 5_3:-53592704 | None:intergenic |
| ATTACAGGCCACATATAGGG+TGG | 0.663418 | 5_3:+53592713 | Msa0818120:CDS |
| CAGTGGAAGTGATCTTGACG+AGG | 0.663719 | 5_3:+53592194 | Msa0818120:CDS |
| GGAATGTTTAGAGCTAATGG+AGG | 0.665641 | 5_3:+53592922 | Msa0818120:CDS |
| ATCCATGCTGGTAAACCCAA+GGG | 0.672709 | 5_3:+53592285 | Msa0818120:CDS |
| GCTTCCTTAACATCAGATGG+TGG | 0.675482 | 5_3:-53589281 | None:intergenic |
| GAATGTTTAGAGCTAATGGA+GGG | 0.676856 | 5_3:+53592923 | Msa0818120:CDS |
| ACCTTTGTGTAAAAGTCCGG+AGG | 0.678097 | 5_3:-53593183 | None:intergenic |
| ATCATAAAAGCGTTGCAACG+AGG | 0.696631 | 5_3:+53591244 | Msa0818120:CDS |
| AAGTGTATATGGGAAATGGG+TGG | 0.704367 | 5_3:+53593121 | Msa0818120:CDS |
| AAAATGGAAGAACTCTACGA+GGG | 0.710983 | 5_3:-53589489 | None:intergenic |
| TGGCATTTCCGGTACCAGAG+AGG | 0.713680 | 5_3:+53589460 | Msa0818120:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATCAATTTTATAATCAAA+AGG | - | chr5_3:53589759-53589778 | None:intergenic | 10.0% |
| !!! | ATTATAAAATTGATTTTAAG+CGG | + | chr5_3:53589763-53589782 | Msa0818120:intron | 10.0% |
| !!! | AAAGAAATATCAATTATTTT+AGG | + | chr5_3:53590364-53590383 | Msa0818120:intron | 10.0% |
| !!! | ATTTATTTATTTTTTTGACA+AGG | + | chr5_3:53590414-53590433 | Msa0818120:intron | 10.0% |
| !! | TAATTACAATATAAAGATAT+TGG | + | chr5_3:53590574-53590593 | Msa0818120:intron | 10.0% |
| !! | TAAAAAAAAAAAAAAGTTGT+TGG | - | chr5_3:53590724-53590743 | None:intergenic | 10.0% |
| !!! | ACAACTTTTTTTTTTTTTTA+AGG | + | chr5_3:53590724-53590743 | Msa0818120:intron | 10.0% |
| !! | GAACAAAATCAATTTATATA+TGG | - | chr5_3:53589730-53589749 | None:intergenic | 15.0% |
| !!! | TTATTTTGACAGAATTTATA+TGG | - | chr5_3:53590304-53590323 | None:intergenic | 15.0% |
| !! | AAATTCTGTCAAAATAAAAT+AGG | + | chr5_3:53590307-53590326 | Msa0818120:intron | 15.0% |
| !!! | TATAAAAGTATAAAATCCAA+AGG | - | chr5_3:53590503-53590522 | None:intergenic | 15.0% |
| !!! | ATGATTAAAAAACCTATTTT+AGG | + | chr5_3:53590629-53590648 | Msa0818120:intron | 15.0% |
| !!! | CTTTTTTTTTTTTTTAAGGA+AGG | + | chr5_3:53590728-53590747 | Msa0818120:intron | 15.0% |
| !! | AAAAATTAGTGTATAAAAGA+AGG | + | chr5_3:53591019-53591038 | Msa0818120:intron | 15.0% |
| !! | AAAATTAGTGTATAAAAGAA+GGG | + | chr5_3:53591020-53591039 | Msa0818120:intron | 15.0% |
| !! | ATATGAAATAATGTGATAAT+GGG | - | chr5_3:53591162-53591181 | None:intergenic | 15.0% |
| !! | TATATGAAATAATGTGATAA+TGG | - | chr5_3:53591163-53591182 | None:intergenic | 15.0% |
| !! | AATTAGTTGAATATTGTTTA+AGG | + | chr5_3:53591618-53591637 | Msa0818120:intron | 15.0% |
| !! | TAATTAGAAACAGAATTAAA+GGG | + | chr5_3:53593821-53593840 | Msa0818120:three_prime_UTR | 15.0% |
| !! | TTTACAATAAAAATGAACAA+AGG | - | chr5_3:53593898-53593917 | None:intergenic | 15.0% |
| !! | ATTCATCAAAGAACAAAAAA+TGG | - | chr5_3:53589508-53589527 | None:intergenic | 20.0% |
| !! | TTGTTCTTTGATGAATTTAA+TGG | + | chr5_3:53589512-53589531 | Msa0818120:CDS | 20.0% |
| !! | ATTATATTAACCAAAGCTTA+AGG | - | chr5_3:53589982-53590001 | None:intergenic | 20.0% |
| !!! | TTGGTTTATGTTTGATTTAA+AGG | - | chr5_3:53590069-53590088 | None:intergenic | 20.0% |
| !!! | CTAACAATCAAATTTTATGA+AGG | + | chr5_3:53590139-53590158 | Msa0818120:intron | 20.0% |
| !!! | AAAAAGTACGTAATTAATGA+GGG | - | chr5_3:53590248-53590267 | None:intergenic | 20.0% |
| !!! | AAAAAAGTACGTAATTAATG+AGG | - | chr5_3:53590249-53590268 | None:intergenic | 20.0% |
| !! | TTGTAGAAAATACATGTATT+TGG | + | chr5_3:53590765-53590784 | Msa0818120:intron | 20.0% |
| !!! | TATGAAATAATGTGATAATG+GGG | - | chr5_3:53591161-53591180 | None:intergenic | 20.0% |
| !! | TCACATTATTTCATATATAC+AGG | + | chr5_3:53591166-53591185 | Msa0818120:CDS | 20.0% |
| !!! | CTTCTAAAGTTATAATAACT+GGG | - | chr5_3:53591536-53591555 | None:intergenic | 20.0% |
| !!! | TCTTCTAAAGTTATAATAAC+TGG | - | chr5_3:53591537-53591556 | None:intergenic | 20.0% |
| !! | ACTAATTCTAACAGTAATAA+TGG | - | chr5_3:53591605-53591624 | None:intergenic | 20.0% |
| !! | ATTAATATCCAGAAAAAATC+GGG | - | chr5_3:53591832-53591851 | None:intergenic | 20.0% |
| !! | CATTAATATCCAGAAAAAAT+CGG | - | chr5_3:53591833-53591852 | None:intergenic | 20.0% |
| !!! | TAACATGTTTTTCTTTTATC+AGG | + | chr5_3:53592870-53592889 | Msa0818120:intron | 20.0% |
| !!! | AACATGTTTTTCTTTTATCA+GGG | + | chr5_3:53592871-53592890 | Msa0818120:intron | 20.0% |
| !!! | CCAATTATCTTTATTTACTT+TGG | - | chr5_3:53593409-53593428 | None:intergenic | 20.0% |
| !! | CCAAAGTAAATAAAGATAAT+TGG | + | chr5_3:53593406-53593425 | Msa0818120:CDS | 20.0% |
| !! | TATAAAATTACAACAATCCT+AGG | - | chr5_3:53593698-53593717 | None:intergenic | 20.0% |
| !! | GTAATTAGAAACAGAATTAA+AGG | + | chr5_3:53593820-53593839 | Msa0818120:three_prime_UTR | 20.0% |
| !!! | TCTCTTATTTTGCTTTTTCT+AGG | + | chr5_3:53589577-53589596 | Msa0818120:intron | 25.0% |
| ! | TCTACAATGACAAAATCAAA+TGG | - | chr5_3:53589653-53589672 | None:intergenic | 25.0% |
| ! | CTAAGATAAAAATGTACATC+AGG | - | chr5_3:53589921-53589940 | None:intergenic | 25.0% |
| ! | AAAGTGACATGAAAATAACT+TGG | - | chr5_3:53590088-53590107 | None:intergenic | 25.0% |
| ! | ATACTTAATACACAAACCTA+AGG | + | chr5_3:53590172-53590191 | Msa0818120:intron | 25.0% |
| ! | TACTTAATACACAAACCTAA+GGG | + | chr5_3:53590173-53590192 | Msa0818120:intron | 25.0% |
| !!! | AATTACGTACTTTTTTGTTG+AGG | + | chr5_3:53590253-53590272 | Msa0818120:intron | 25.0% |
| !!! | ATTACGTACTTTTTTGTTGA+GGG | + | chr5_3:53590254-53590273 | Msa0818120:intron | 25.0% |
| ! | ATAAAATAGGCCATAGAATT+CGG | + | chr5_3:53590320-53590339 | Msa0818120:intron | 25.0% |
| !!! | TTAATTTTGACCGAATTCTA+TGG | - | chr5_3:53590333-53590352 | None:intergenic | 25.0% |
| !!! | AAAAGCATTTTTCATTCCTT+TGG | + | chr5_3:53590484-53590503 | Msa0818120:intron | 25.0% |
| !! | TGGTCTAAAATACATGTATT+TGG | + | chr5_3:53590785-53590804 | Msa0818120:intron | 25.0% |
| !! | CATGTATTTGGTCTAAAATA+TGG | + | chr5_3:53590777-53590796 | Msa0818120:intron | 25.0% |
| !! | GATGTGATACATATACTTTT+GGG | + | chr5_3:53590819-53590838 | Msa0818120:intron | 25.0% |
| !! | GAATTTATTTCTTTGACAAG+AGG | - | chr5_3:53590919-53590938 | None:intergenic | 25.0% |
| ! | TATAAAAGAAGGGACATTTA+CGG | + | chr5_3:53591030-53591049 | Msa0818120:intron | 25.0% |
| !! | TTTTATGTCTTTTCATACTG+TGG | + | chr5_3:53591365-53591384 | Msa0818120:intron | 25.0% |
| !! | ACATATTTCTGATATATCAC+AGG | + | chr5_3:53591436-53591455 | Msa0818120:intron | 25.0% |
| !! | AACAAATGCATACTCTTTTA+TGG | - | chr5_3:53591502-53591521 | None:intergenic | 25.0% |
| ! | ACTTAGTTGATTATTGTTTG+GGG | - | chr5_3:53591791-53591810 | None:intergenic | 25.0% |
| ! | GACTTAGTTGATTATTGTTT+GGG | - | chr5_3:53591792-53591811 | None:intergenic | 25.0% |
| ! | AGACTTAGTTGATTATTGTT+TGG | - | chr5_3:53591793-53591812 | None:intergenic | 25.0% |
| ! | TAGATGACAACTCAAATATT+TGG | + | chr5_3:53591874-53591893 | Msa0818120:intron | 25.0% |
| !! | TTGGAATCAAGATATTCTTT+TGG | - | chr5_3:53591991-53592010 | None:intergenic | 25.0% |
| ! | TCTTGATTCCAAACAATTTA+AGG | + | chr5_3:53591999-53592018 | Msa0818120:CDS | 25.0% |
| ! | ACTAGTATCCTTAAATTGTT+TGG | - | chr5_3:53592010-53592029 | None:intergenic | 25.0% |
| ! | ATATATAACTCCAACTAAGA+TGG | + | chr5_3:53592612-53592631 | Msa0818120:intron | 25.0% |
| ! | TTACACAGAAGAATATTCTT+AGG | + | chr5_3:53592656-53592675 | Msa0818120:CDS | 25.0% |
| ! | TACACAGAAGAATATTCTTA+GGG | + | chr5_3:53592657-53592676 | Msa0818120:CDS | 25.0% |
| !! | GAAAGTGCATTAAAAAAAGT+TGG | - | chr5_3:53592837-53592856 | None:intergenic | 25.0% |
| !! | ACATGTTTTTCTTTTATCAG+GGG | + | chr5_3:53592872-53592891 | Msa0818120:intron | 25.0% |
| ! | GACGAAAATAACATTAACAT+TGG | - | chr5_3:53593270-53593289 | None:intergenic | 25.0% |
| ! | ATATTACAGGTTTGTATTGT+TGG | + | chr5_3:53593354-53593373 | Msa0818120:intron | 25.0% |
| !! | AAGATAATTGGTTTCCAATT+TGG | + | chr5_3:53593418-53593437 | Msa0818120:CDS | 25.0% |
| !! | AGATAATTGGTTTCCAATTT+GGG | + | chr5_3:53593419-53593438 | Msa0818120:CDS | 25.0% |
| ! | AGAATATGATAAGCATGAAA+AGG | + | chr5_3:53593503-53593522 | Msa0818120:CDS | 25.0% |
| ! | AGTTCCTTTATATGATCAAA+AGG | + | chr5_3:53593584-53593603 | Msa0818120:CDS | 25.0% |
| ! | GTTCCTTTATATGATCAAAA+GGG | + | chr5_3:53593585-53593604 | Msa0818120:CDS | 25.0% |
| ! | AACTGCTTGAAACAAAATTA+TGG | + | chr5_3:53593737-53593756 | Msa0818120:three_prime_UTR | 25.0% |
| ! | TAAGTAAATATAACCTCTGA+AGG | - | chr5_3:53593763-53593782 | None:intergenic | 25.0% |
| ! | ACAAATTTCAATGATTAGGA+GGG | - | chr5_3:53593873-53593892 | None:intergenic | 25.0% |
| ! | AACAAATTTCAATGATTAGG+AGG | - | chr5_3:53593874-53593893 | None:intergenic | 25.0% |
| ! | GGAAACAAATTTCAATGATT+AGG | - | chr5_3:53593877-53593896 | None:intergenic | 25.0% |
| ! | AAAAGTGATAATGTTGGTGA+TGG | + | chr5_3:53589440-53589459 | Msa0818120:CDS | 30.0% |
| AATAAGAGAGAGTGAAGAAA+GGG | - | chr5_3:53589566-53589585 | None:intergenic | 30.0% | |
| AAATAAGAGAGAGTGAAGAA+AGG | - | chr5_3:53589567-53589586 | None:intergenic | 30.0% | |
| !!! | TTTGCTTTTTCTAGGAAATG+CGG | + | chr5_3:53589585-53589604 | Msa0818120:intron | 30.0% |
| ! | TTGATTTTGTCATTGTAGAG+AGG | + | chr5_3:53589654-53589673 | Msa0818120:intron | 30.0% |
| ! | TGATTTTGTCATTGTAGAGA+GGG | + | chr5_3:53589655-53589674 | Msa0818120:intron | 30.0% |
| CACATGTGATAAGCAAAATT+AGG | - | chr5_3:53589797-53589816 | None:intergenic | 30.0% | |
| ! | CTAATTTTGCTTATCACATG+TGG | + | chr5_3:53589795-53589814 | Msa0818120:intron | 30.0% |
| ATTAAGTGATAACTCCCAAA+CGG | - | chr5_3:53589831-53589850 | None:intergenic | 30.0% | |
| !! | TTTTAAGTGTGCCTACATTA+TGG | + | chr5_3:53589868-53589887 | Msa0818120:intron | 30.0% |
| GACAAGGACTAAATTATTGT+TGG | + | chr5_3:53590430-53590449 | Msa0818120:intron | 30.0% | |
| TATTGGTCAAATTCGAATGT+TGG | + | chr5_3:53590591-53590610 | Msa0818120:intron | 30.0% | |
| !! | ATTTTCTACAAAGAGTGTGT+CGG | - | chr5_3:53590756-53590775 | None:intergenic | 30.0% |
| ! | GGATGTGATACATATACTTT+TGG | + | chr5_3:53590818-53590837 | Msa0818120:intron | 30.0% |
| ATATTGTGCAGGTATATCAA+AGG | - | chr5_3:53590947-53590966 | None:intergenic | 30.0% | |
| AGCTTCAAAATATATTGTGC+AGG | - | chr5_3:53590958-53590977 | None:intergenic | 30.0% | |
| AGATTTATTTGTAGTACCAG+AGG | + | chr5_3:53590987-53591006 | Msa0818120:intron | 30.0% | |
| ! | ATCATTGCTATTGTCAAGAA+GGG | - | chr5_3:53591107-53591126 | None:intergenic | 30.0% |
| ACAATAGCAATGATGTGTTA+TGG | + | chr5_3:53591113-53591132 | Msa0818120:intron | 30.0% | |
| ATGTCATCTTTAGCTGAATT+TGG | - | chr5_3:53591298-53591317 | None:intergenic | 30.0% | |
| ! | TGTTTAAGGTAGTTACAACT+TGG | + | chr5_3:53591632-53591651 | Msa0818120:intron | 30.0% |
| TTTGTCATAGTTTCTGTATG+CGG | - | chr5_3:53591916-53591935 | None:intergenic | 30.0% | |
| ! | CTTTTAATGATTCTGGTGTT+GGG | - | chr5_3:53591942-53591961 | None:intergenic | 30.0% |
| ! | TCTTTTAATGATTCTGGTGT+TGG | - | chr5_3:53591943-53591962 | None:intergenic | 30.0% |
| ! | ACTCGATCTTTTAATGATTC+TGG | - | chr5_3:53591949-53591968 | None:intergenic | 30.0% |
| ! | GAATCAAGATATTCTTTTGG+TGG | - | chr5_3:53591988-53592007 | None:intergenic | 30.0% |
| TAAAATGCAACCATCTTAGT+TGG | - | chr5_3:53592625-53592644 | None:intergenic | 30.0% | |
| ! | TGGTTGCATTTTATACTTCT+AGG | + | chr5_3:53592632-53592651 | Msa0818120:intron | 30.0% |
| ! | CAATGCTCTTTTCGAATAAA+AGG | + | chr5_3:53592788-53592807 | Msa0818120:intron | 30.0% |
| AAATCACTTTGGTATATGCA+AGG | + | chr5_3:53592901-53592920 | Msa0818120:CDS | 30.0% | |
| !!! | CCTTTTTCAGTAAGAAAAAC+AGG | - | chr5_3:53592967-53592986 | None:intergenic | 30.0% |
| !! | CCTGTTTTTCTTACTGAAAA+AGG | + | chr5_3:53592964-53592983 | Msa0818120:CDS | 30.0% |
| ! | TTGAAGGTGAGATATTGTTT+TGG | + | chr5_3:53593039-53593058 | Msa0818120:intron | 30.0% |
| TGGAAGGAAATCAATTAGTT+TGG | + | chr5_3:53593059-53593078 | Msa0818120:intron | 30.0% | |
| ATATACACTTTCACCTATAG+TGG | - | chr5_3:53593111-53593130 | None:intergenic | 30.0% | |
| ! | ACTATAGGTGAAAGTGTATA+TGG | + | chr5_3:53593110-53593129 | Msa0818120:intron | 30.0% |
| ! | CTATAGGTGAAAGTGTATAT+GGG | + | chr5_3:53593111-53593130 | Msa0818120:intron | 30.0% |
| ! | TGAAAGTGTATATGGGAAAT+GGG | + | chr5_3:53593118-53593137 | Msa0818120:CDS | 30.0% |
| ATGAATTTAATCACATGCGT+AGG | - | chr5_3:53593232-53593251 | None:intergenic | 30.0% | |
| ACTTATCAGTAATATCTCTG+CGG | + | chr5_3:53593326-53593345 | Msa0818120:intron | 30.0% | |
| !! | TTCTTATTGACTTTATCAGC+CGG | - | chr5_3:53593384-53593403 | None:intergenic | 30.0% |
| ! | AAGCATGAAAAGGATGATTT+TGG | + | chr5_3:53593513-53593532 | Msa0818120:CDS | 30.0% |
| ! | TCACCCTTTTGATCATATAA+AGG | - | chr5_3:53593591-53593610 | None:intergenic | 30.0% |
| ! | AATCTGTCAAGCTTTTAATG+CGG | + | chr5_3:53593619-53593638 | Msa0818120:CDS | 30.0% |
| TAGGAATATTTGTGTCCATA+TGG | - | chr5_3:53593679-53593698 | None:intergenic | 30.0% | |
| ATATGGACACAAATATTCCT+AGG | + | chr5_3:53593678-53593697 | Msa0818120:three_prime_UTR | 30.0% | |
| GGTTATATTTACTTACCTTC+AGG | + | chr5_3:53593768-53593787 | Msa0818120:three_prime_UTR | 30.0% | |
| TGGTGGTAATTGTTCTTGTT+CGG | - | chr5_3:53589267-53589286 | None:intergenic | 35.0% | |
| ATTACCACCATCTGATGTTA+AGG | + | chr5_3:53589277-53589296 | Msa0818120:CDS | 35.0% | |
| AAAGCTTCCTTAACATCAGA+TGG | - | chr5_3:53589287-53589306 | None:intergenic | 35.0% | |
| ! | AAATCATCTTCGGTGCATTT+CGG | - | chr5_3:53589386-53589405 | None:intergenic | 35.0% |
| TTCAAAATGCAATGCAATCG+CGG | + | chr5_3:53589417-53589436 | Msa0818120:CDS | 35.0% | |
| AAAATGGAAGAACTCTACGA+GGG | - | chr5_3:53589492-53589511 | None:intergenic | 35.0% | |
| AAAAATGGAAGAACTCTACG+AGG | - | chr5_3:53589493-53589512 | None:intergenic | 35.0% | |
| TAATGGTCCCATAAAATCAC+AGG | + | chr5_3:53589529-53589548 | Msa0818120:CDS | 35.0% | |
| ! | ACACACACCTGTGATTTTAT+GGG | - | chr5_3:53589539-53589558 | None:intergenic | 35.0% |
| ! | AACACACACCTGTGATTTTA+TGG | - | chr5_3:53589540-53589559 | None:intergenic | 35.0% |
| ATAAGAGAGAGTGAAGAAAG+GGG | - | chr5_3:53589565-53589584 | None:intergenic | 35.0% | |
| !!! | TTGCTTTTTCTAGGAAATGC+GGG | + | chr5_3:53589586-53589605 | Msa0818120:intron | 35.0% |
| ! | ATTTTGCTTATCACATGTGG+TGG | + | chr5_3:53589798-53589817 | Msa0818120:intron | 35.0% |
| TTAAGTGATAACTCCCAAAC+GGG | - | chr5_3:53589830-53589849 | None:intergenic | 35.0% | |
| AAGCGATAAAGCCATAATGT+AGG | - | chr5_3:53589882-53589901 | None:intergenic | 35.0% | |
| ATGTACATCAGGTTATGTGA+AGG | - | chr5_3:53589910-53589929 | None:intergenic | 35.0% | |
| ! | TCTTAGTTCTTCTTCTTCTG+TGG | + | chr5_3:53589935-53589954 | Msa0818120:intron | 35.0% |
| TTAAGGCCAAGAATTGTACA+AGG | - | chr5_3:53589965-53589984 | None:intergenic | 35.0% | |
| TTTATGCACGACAACCAAAT+GGG | + | chr5_3:53590220-53590239 | Msa0818120:intron | 35.0% | |
| TTTCTTTGACAAGAGGAAAG+TGG | - | chr5_3:53590912-53590931 | None:intergenic | 35.0% | |
| ! | AATTTTTCCTGTTTCACCTC+TGG | - | chr5_3:53591006-53591025 | None:intergenic | 35.0% |
| ! | CATCATTGCTATTGTCAAGA+AGG | - | chr5_3:53591108-53591127 | None:intergenic | 35.0% |
| GGGTTATAGAACTCGATTTA+TGG | + | chr5_3:53591272-53591291 | Msa0818120:CDS | 35.0% | |
| ! | CTTTTATGGACTTCAAGCAT+TGG | - | chr5_3:53591488-53591507 | None:intergenic | 35.0% |
| AACTTATGTGTGCACTTTGT+TGG | + | chr5_3:53591667-53591686 | Msa0818120:intron | 35.0% | |
| TTCATCACCTTCAACACTAA+GGG | - | chr5_3:53592076-53592095 | None:intergenic | 35.0% | |
| TTTCATCACCTTCAACACTA+AGG | - | chr5_3:53592077-53592096 | None:intergenic | 35.0% | |
| GTAATCATACGTTTGTACTG+TGG | - | chr5_3:53592264-53592283 | None:intergenic | 35.0% | |
| TAAACCCAAGGGTCATATAA+GGG | + | chr5_3:53592296-53592315 | Msa0818120:CDS | 35.0% | |
| ! | TAACATCACCAGCAACTTTT+AGG | - | chr5_3:53592326-53592345 | None:intergenic | 35.0% |
| CTTATGGAGCTGATATTGTT+AGG | + | chr5_3:53592391-53592410 | Msa0818120:CDS | 35.0% | |
| TGACATTGACATGACACATA+TGG | + | chr5_3:53592464-53592483 | Msa0818120:intron | 35.0% | |
| TATTCTTAGGGTGTATCCAA+AGG | + | chr5_3:53592669-53592688 | Msa0818120:CDS | 35.0% | |
| ATTCTTAGGGTGTATCCAAA+GGG | + | chr5_3:53592670-53592689 | Msa0818120:CDS | 35.0% | |
| ! | TTTTTCTTTTATCAGGGGCA+TGG | + | chr5_3:53592877-53592896 | Msa0818120:intron | 35.0% |
| ! | CAAGGAATGTTTAGAGCTAA+TGG | + | chr5_3:53592919-53592938 | Msa0818120:CDS | 35.0% |
| ! | GAATGTTTAGAGCTAATGGA+GGG | + | chr5_3:53592923-53592942 | Msa0818120:CDS | 35.0% |
| !!! | TTCACTGGCAGTGTTATTTT+AGG | - | chr5_3:53593012-53593031 | None:intergenic | 35.0% |
| !!! | AGGTGAGATATTGTTTTGGA+AGG | + | chr5_3:53593043-53593062 | Msa0818120:intron | 35.0% |
| ! | GTGAAAGTGTATATGGGAAA+TGG | + | chr5_3:53593117-53593136 | Msa0818120:CDS | 35.0% |
| CTCTGCGGATATTATATTAC+AGG | + | chr5_3:53593341-53593360 | Msa0818120:intron | 35.0% | |
| TCAAACTCTTCATCCCAAAT+TGG | - | chr5_3:53593435-53593454 | None:intergenic | 35.0% | |
| ! | CATGAAAAGGATGATTTTGG+TGG | + | chr5_3:53593516-53593535 | Msa0818120:CDS | 35.0% |
| ! | TCAAGCTTTTAATGCGGTTT+CGG | + | chr5_3:53593625-53593644 | Msa0818120:CDS | 35.0% |
| AACAAAATTATGGCCTTCAG+AGG | + | chr5_3:53593747-53593766 | Msa0818120:three_prime_UTR | 35.0% | |
| GATCCGGTTCAAATCATCTT+CGG | - | chr5_3:53589396-53589415 | None:intergenic | 40.0% | |
| ! | GCATTGCATTTTGAACGATC+CGG | - | chr5_3:53589412-53589431 | None:intergenic | 40.0% |
| ! | TCGCGGAAAAGTGATAATGT+TGG | + | chr5_3:53589434-53589453 | Msa0818120:CDS | 40.0% |
| !! | AATGTTGGTGATGGCATTTC+CGG | + | chr5_3:53589449-53589468 | Msa0818120:CDS | 40.0% |
| !! | CAATTCTTGGCCTTAAGCTT+TGG | + | chr5_3:53589969-53589988 | Msa0818120:intron | 40.0% |
| ! | AGAGAGAAATTTGCTCCCTT+AGG | - | chr5_3:53590191-53590210 | None:intergenic | 40.0% |
| GTTTATGCACGACAACCAAA+TGG | + | chr5_3:53590219-53590238 | Msa0818120:intron | 40.0% | |
| TTATGCACGACAACCAAATG+GGG | + | chr5_3:53590221-53590240 | Msa0818120:intron | 40.0% | |
| AATTAATGAGGGTCCCCATT+TGG | - | chr5_3:53590237-53590256 | None:intergenic | 40.0% | |
| ! | TTGAGACTTTGAAGACTGAG+AGG | + | chr5_3:53590670-53590689 | Msa0818120:intron | 40.0% |
| TAGCAATGATGTGTTATGGC+AGG | + | chr5_3:53591117-53591136 | Msa0818120:intron | 40.0% | |
| ! | ATAATGGGGCATTCATGTCA+TGG | - | chr5_3:53591147-53591166 | None:intergenic | 40.0% |
| GACACAATTCCTACCTAACT+GGG | + | chr5_3:53591188-53591207 | Msa0818120:CDS | 40.0% | |
| ! | CGTTGCAACGCTTTTATGAT+TGG | - | chr5_3:53591244-53591263 | None:intergenic | 40.0% |
| !! | ATCATAAAAGCGTTGCAACG+AGG | + | chr5_3:53591244-53591263 | Msa0818120:CDS | 40.0% |
| GATGACATCGTTGTAGTTCA+TGG | + | chr5_3:53591310-53591329 | Msa0818120:CDS | 40.0% | |
| ACATCGTTGTAGTTCATGGA+AGG | + | chr5_3:53591314-53591333 | Msa0818120:CDS | 40.0% | |
| !! | GCAACTTTAGCTTGAAGATC+TGG | - | chr5_3:53591570-53591589 | None:intergenic | 40.0% |
| TCTTCAAGCTAAAGTTGCAG+AGG | + | chr5_3:53591572-53591591 | Msa0818120:CDS | 40.0% | |
| AGGATACTAGTGACAGTGAA+AGG | + | chr5_3:53592019-53592038 | Msa0818120:CDS | 40.0% | |
| GGATACTAGTGACAGTGAAA+GGG | + | chr5_3:53592020-53592039 | Msa0818120:CDS | 40.0% | |
| TAGTGACAGTGAAAGGGAAA+TGG | + | chr5_3:53592026-53592045 | Msa0818120:CDS | 40.0% | |
| AGTGACAGTGAAAGGGAAAT+GGG | + | chr5_3:53592027-53592046 | Msa0818120:CDS | 40.0% | |
| GAAGGTGATGAAAGAGTAAG+CGG | + | chr5_3:53592084-53592103 | Msa0818120:intron | 40.0% | |
| CGTATGATTACAATCCATGC+TGG | + | chr5_3:53592273-53592292 | Msa0818120:CDS | 40.0% | |
| GTAAACCCAAGGGTCATATA+AGG | + | chr5_3:53592295-53592314 | Msa0818120:CDS | 40.0% | |
| GAGTGAGCAAGAACTTGAAA+AGG | + | chr5_3:53592359-53592378 | Msa0818120:CDS | 40.0% | |
| GAAAAGGCTTCTGCTTCTTA+TGG | + | chr5_3:53592375-53592394 | Msa0818120:CDS | 40.0% | |
| !! | TTCTAAAGTGTTCGTGTGCT+AGG | - | chr5_3:53592436-53592455 | None:intergenic | 40.0% |
| GTCGGTGTATCTATTTGTGT+TGG | + | chr5_3:53592547-53592566 | Msa0818120:intron | 40.0% | |
| TCGAATTACAGGCCACATAT+AGG | + | chr5_3:53592709-53592728 | Msa0818120:CDS | 40.0% | |
| CGAATTACAGGCCACATATA+GGG | + | chr5_3:53592710-53592729 | Msa0818120:CDS | 40.0% | |
| ! | GGAATGTTTAGAGCTAATGG+AGG | + | chr5_3:53592922-53592941 | Msa0818120:CDS | 40.0% |
| GGATCAAAACACTCATTGTG+TGG | - | chr5_3:53592991-53593010 | None:intergenic | 40.0% | |
| ACCTTCAATGTCTTCTTCAC+TGG | - | chr5_3:53593027-53593046 | None:intergenic | 40.0% | |
| AATTCCCTCTTGTCCACTAT+AGG | + | chr5_3:53593095-53593114 | Msa0818120:intron | 40.0% | |
| !! | TTCACCTATAGTGGACAAGA+GGG | - | chr5_3:53593102-53593121 | None:intergenic | 40.0% |
| !! | TTTCACCTATAGTGGACAAG+AGG | - | chr5_3:53593103-53593122 | None:intergenic | 40.0% |
| AAGTGTATATGGGAAATGGG+TGG | + | chr5_3:53593121-53593140 | Msa0818120:CDS | 40.0% | |
| CTTTGATACATTCTCTCCTC+CGG | + | chr5_3:53593167-53593186 | Msa0818120:CDS | 40.0% | |
| CTCACCTTTGTGTAAAAGTC+CGG | - | chr5_3:53593189-53593208 | None:intergenic | 40.0% | |
| GGTTTGTATTGTTGGAGTAC+CGG | + | chr5_3:53593362-53593381 | Msa0818120:intron | 40.0% | |
| !! | TGATGACTTGTTGATCCTGA+AGG | - | chr5_3:53593786-53593805 | None:intergenic | 40.0% |
| GCTTCCTTAACATCAGATGG+TGG | - | chr5_3:53589284-53589303 | None:intergenic | 45.0% | |
| GCTTTCTCCGAATTTGCCAA+AGG | + | chr5_3:53589302-53589321 | Msa0818120:CDS | 45.0% | |
| TTCTCCGAATTTGCCAAAGG+CGG | + | chr5_3:53589305-53589324 | Msa0818120:CDS | 45.0% | |
| TGATCCGCCTTTGGCAAATT+CGG | - | chr5_3:53589312-53589331 | None:intergenic | 45.0% | |
| CATTGTCTGCTGATCAGCTA+CGG | + | chr5_3:53589333-53589352 | Msa0818120:CDS | 45.0% | |
| GCACCGAAGATGATTTGAAC+CGG | + | chr5_3:53589390-53589409 | Msa0818120:CDS | 45.0% | |
| ! | TTCTAGGAAATGCGGGAAAG+AGG | + | chr5_3:53589593-53589612 | Msa0818120:intron | 45.0% |
| TGTGGTGGTTTAATCCCGTT+TGG | + | chr5_3:53589813-53589832 | Msa0818120:intron | 45.0% | |
| GTGGTGGTTTAATCCCGTTT+GGG | + | chr5_3:53589814-53589833 | Msa0818120:intron | 45.0% | |
| GGCACTCCTTGTACAATTCT+TGG | + | chr5_3:53589956-53589975 | Msa0818120:intron | 45.0% | |
| !! | ACCTATTTTAGGTGACCCGA+TGG | + | chr5_3:53590640-53590659 | Msa0818120:intron | 45.0% |
| ACCATCGGGTCACCTAAAAT+AGG | - | chr5_3:53590644-53590663 | None:intergenic | 45.0% | |
| AAGTCTCAAGCCAACACCAT+CGG | - | chr5_3:53590659-53590678 | None:intergenic | 45.0% | |
| TGCGAGTGTGAGTGTAAGTT+TGG | + | chr5_3:53590866-53590885 | Msa0818120:intron | 45.0% | |
| TGTAGTACCAGAGGTGAAAC+AGG | + | chr5_3:53590996-53591015 | Msa0818120:intron | 45.0% | |
| GGACACAATTCCTACCTAAC+TGG | + | chr5_3:53591187-53591206 | Msa0818120:CDS | 45.0% | |
| ! | TAGCTGATTCCCAGTTAGGT+AGG | - | chr5_3:53591200-53591219 | None:intergenic | 45.0% |
| ! | TGCTTAGCTGATTCCCAGTT+AGG | - | chr5_3:53591204-53591223 | None:intergenic | 45.0% |
| !! | AAGCATTGGACAAGTGAGAC+AGG | - | chr5_3:53591474-53591493 | None:intergenic | 45.0% |
| !!! | CTCGAAGTCCCGATTTTTTC+TGG | + | chr5_3:53591821-53591840 | Msa0818120:intron | 45.0% |
| GAAAGGGAAATGGGTGAAGA+AGG | + | chr5_3:53592036-53592055 | Msa0818120:CDS | 45.0% | |
| ATCCAAACTTGACAGTGCAG+TGG | + | chr5_3:53592177-53592196 | Msa0818120:intron | 45.0% | |
| TTCCACTGCACTGTCAAGTT+TGG | - | chr5_3:53592182-53592201 | None:intergenic | 45.0% | |
| !!! | TGGTCTGGCTTTTTATCACG+AGG | - | chr5_3:53592231-53592250 | None:intergenic | 45.0% |
| AATCCATGCTGGTAAACCCA+AGG | + | chr5_3:53592284-53592303 | Msa0818120:CDS | 45.0% | |
| ATCCATGCTGGTAAACCCAA+GGG | + | chr5_3:53592285-53592304 | Msa0818120:CDS | 45.0% | |
| TGGTCCCTTATATGACCCTT+GGG | - | chr5_3:53592303-53592322 | None:intergenic | 45.0% | |
| ! | CATCACCAGCAACTTTTAGG+TGG | - | chr5_3:53592323-53592342 | None:intergenic | 45.0% |
| TGACATGACACATATGGACG+TGG | + | chr5_3:53592470-53592489 | Msa0818120:intron | 45.0% | |
| TGATGTTTGCGTGTCAGTGT+CGG | + | chr5_3:53592529-53592548 | Msa0818120:intron | 45.0% | |
| GTGTCACCTCTTCGAATTAC+AGG | + | chr5_3:53592698-53592717 | Msa0818120:CDS | 45.0% | |
| ATGTGGCCTGTAATTCGAAG+AGG | - | chr5_3:53592707-53592726 | None:intergenic | 45.0% | |
| ATTACAGGCCACATATAGGG+TGG | + | chr5_3:53592713-53592732 | Msa0818120:CDS | 45.0% | |
| CCATACATCCACCCTATATG+TGG | - | chr5_3:53592724-53592743 | None:intergenic | 45.0% | |
| CCACATATAGGGTGGATGTA+TGG | + | chr5_3:53592721-53592740 | Msa0818120:CDS | 45.0% | |
| GATGGTCGCATTTAACATGC+AGG | + | chr5_3:53592750-53592769 | Msa0818120:CDS | 45.0% | |
| TCGCATTTAACATGCAGGTC+AGG | + | chr5_3:53592755-53592774 | Msa0818120:intron | 45.0% | |
| CGCATTTAACATGCAGGTCA+GGG | + | chr5_3:53592756-53592775 | Msa0818120:intron | 45.0% | |
| ! | AGGGGCATGGAAAATCACTT+TGG | + | chr5_3:53592890-53592909 | Msa0818120:intron | 45.0% |
| ! | TTTAGAGCTAATGGAGGGTG+TGG | + | chr5_3:53592928-53592947 | Msa0818120:CDS | 45.0% |
| GCCAGTGAAGAAGACATTGA+AGG | + | chr5_3:53593023-53593042 | Msa0818120:CDS | 45.0% | |
| ! | TCCTCCGGACTTTTACACAA+AGG | + | chr5_3:53593182-53593201 | Msa0818120:CDS | 45.0% |
| ACCTTTGTGTAAAAGTCCGG+AGG | - | chr5_3:53593186-53593205 | None:intergenic | 45.0% | |
| ! | TTCCAGAGCTTGCTTTGCTT+AGG | + | chr5_3:53593469-53593488 | Msa0818120:CDS | 45.0% |
| ATCCTAAGCAAAGCAAGCTC+TGG | - | chr5_3:53593474-53593493 | None:intergenic | 45.0% | |
| CCAGATTTCAGCTCAGAAAC+TGG | - | chr5_3:53593555-53593574 | None:intergenic | 45.0% | |
| CCAGTTTCTGAGCTGAAATC+TGG | + | chr5_3:53593552-53593571 | Msa0818120:CDS | 45.0% | |
| CTTGCCTTAGCTAAGCCATA+TGG | + | chr5_3:53593661-53593680 | Msa0818120:three_prime_UTR | 45.0% | |
| GTGTCCATATGGCTTAGCTA+AGG | - | chr5_3:53593668-53593687 | None:intergenic | 45.0% | |
| !!! | TTAAAATCAATTATTTTTTT+CGG | - | chr5_3:53590023-53590042 | None:intergenic | 5.0% |
| AGACAATGCTGATCCGCCTT+TGG | - | chr5_3:53589321-53589340 | None:intergenic | 50.0% | |
| TTTAGGTGACCCGATGGTGT+TGG | + | chr5_3:53590646-53590665 | Msa0818120:intron | 50.0% | |
| AGTCTCAAGCCAACACCATC+GGG | - | chr5_3:53590658-53590677 | None:intergenic | 50.0% | |
| TTAGCTTATGTGTGCGCGTC+AGG | - | chr5_3:53591746-53591765 | None:intergenic | 50.0% | |
| ! | TCACCAGCCCTTAGTGTTGA+AGG | + | chr5_3:53592066-53592085 | Msa0818120:CDS | 50.0% |
| TCACCTTCAACACTAAGGGC+TGG | - | chr5_3:53592072-53592091 | None:intergenic | 50.0% | |
| CAGTGGAAGTGATCTTGACG+AGG | + | chr5_3:53592194-53592213 | Msa0818120:CDS | 50.0% | |
| GGAAGTGATCTTGACGAGGA+AGG | + | chr5_3:53592198-53592217 | Msa0818120:CDS | 50.0% | |
| TGTACTGTGGTGCACTTTGC+TGG | - | chr5_3:53592251-53592270 | None:intergenic | 50.0% | |
| GTGGTCCCTTATATGACCCT+TGG | - | chr5_3:53592304-53592323 | None:intergenic | 50.0% | |
| AGGGACCACCTAAAAGTTGC+TGG | + | chr5_3:53592315-53592334 | Msa0818120:CDS | 50.0% | |
| GTGGATGTATGGAGCTCAGA+TGG | + | chr5_3:53592732-53592751 | Msa0818120:CDS | 50.0% | |
| ! | CATGCGTAGGTGCTACATAG+CGG | - | chr5_3:53593219-53593238 | None:intergenic | 50.0% |
| !! | GCAAGCTCTGGAACACTCAA+AGG | - | chr5_3:53593462-53593481 | None:intergenic | 50.0% |
| TGGCATTTCCGGTACCAGAG+AGG | + | chr5_3:53589460-53589479 | Msa0818120:CDS | 55.0% | |
| GGCATTTCCGGTACCAGAGA+GGG | + | chr5_3:53589461-53589480 | Msa0818120:CDS | 55.0% | |
| ! | AAGCGTTGCAACGAGGTGTG+CGG | + | chr5_3:53591251-53591270 | Msa0818120:CDS | 55.0% |
| !! | CTTTGTTGGCTTGCCGATCC+TGG | + | chr5_3:53591681-53591700 | Msa0818120:intron | 55.0% |
| ! | ACACCTCTAGGAGCCAGGAT+CGG | - | chr5_3:53591697-53591716 | None:intergenic | 55.0% |
| ! | CTCCTAGAGGTGTGTGTCGT+TGG | + | chr5_3:53591704-53591723 | Msa0818120:intron | 55.0% |
| CACCAACGACACACACCTCT+AGG | - | chr5_3:53591709-53591728 | None:intergenic | 55.0% | |
| ! | CTAGAGGTGTGTGTCGTTGG+TGG | + | chr5_3:53591707-53591726 | Msa0818120:intron | 55.0% |
| ! | TGTGTGTCGTTGGTGGACCT+AGG | + | chr5_3:53591714-53591733 | Msa0818120:intron | 55.0% |
| TGCGCGTCAGGATGTATCCT+AGG | - | chr5_3:53591734-53591753 | None:intergenic | 55.0% | |
| TGTGGTGCACTTTGCTGGTC+TGG | - | chr5_3:53592246-53592265 | None:intergenic | 55.0% | |
| GACCCTTGGGTTTACCAGCA+TGG | - | chr5_3:53592290-53592309 | None:intergenic | 55.0% | |
| GAGGTGACACGTGTTCCCTT+TGG | - | chr5_3:53592688-53592707 | None:intergenic | 55.0% | |
| ACATGCAGGTCAGGGACTTG+AGG | + | chr5_3:53592764-53592783 | Msa0818120:intron | 55.0% | |
| GGTGAGTCCCTCTCTGGTAC+CGG | - | chr5_3:53589471-53589490 | None:intergenic | 60.0% | |
| TACGAGGGTGAGTCCCTCTC+TGG | - | chr5_3:53589477-53589496 | None:intergenic | 60.0% | |
| AGCGTTGCAACGAGGTGTGC+GGG | + | chr5_3:53591252-53591271 | Msa0818120:CDS | 60.0% | |
| TTGCCGATCCTGGCTCCTAG+AGG | + | chr5_3:53591691-53591710 | Msa0818120:intron | 60.0% | |
| ! | GACACACACCTCTAGGAGCC+AGG | - | chr5_3:53591702-53591721 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 53589230 | 53593960 | 53589230 | ID=Msa0818120;Name=Msa0818120 |
| chr5_3 | mRNA | 53589230 | 53593960 | 53589230 | ID=Msa0818120-mRNA-1;Parent=Msa0818120;Name=Msa0818120-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0|0.87|0.77|1|1|1|9|304|582 |
| chr5_3 | exon | 53589230 | 53589550 | 53589230 | ID=Msa0818120-mRNA-1:exon:16187;Parent=Msa0818120-mRNA-1 |
| chr5_3 | exon | 53591139 | 53591335 | 53591139 | ID=Msa0818120-mRNA-1:exon:16188;Parent=Msa0818120-mRNA-1 |
| chr5_3 | exon | 53591458 | 53591593 | 53591458 | ID=Msa0818120-mRNA-1:exon:16189;Parent=Msa0818120-mRNA-1 |
| chr5_3 | exon | 53591877 | 53592098 | 53591877 | ID=Msa0818120-mRNA-1:exon:16190;Parent=Msa0818120-mRNA-1 |
| chr5_3 | exon | 53592192 | 53592412 | 53592192 | ID=Msa0818120-mRNA-1:exon:16191;Parent=Msa0818120-mRNA-1 |
| chr5_3 | exon | 53592654 | 53592771 | 53592654 | ID=Msa0818120-mRNA-1:exon:16192;Parent=Msa0818120-mRNA-1 |
| chr5_3 | exon | 53592892 | 53593044 | 53592892 | ID=Msa0818120-mRNA-1:exon:16193;Parent=Msa0818120-mRNA-1 |
| chr5_3 | exon | 53593117 | 53593203 | 53593117 | ID=Msa0818120-mRNA-1:exon:16194;Parent=Msa0818120-mRNA-1 |
| chr5_3 | exon | 53593363 | 53593960 | 53593363 | ID=Msa0818120-mRNA-1:exon:16195;Parent=Msa0818120-mRNA-1 |
| chr5_3 | CDS | 53589230 | 53589550 | 53589230 | ID=Msa0818120-mRNA-1:cds;Parent=Msa0818120-mRNA-1 |
| chr5_3 | CDS | 53591139 | 53591335 | 53591139 | ID=Msa0818120-mRNA-1:cds;Parent=Msa0818120-mRNA-1 |
| chr5_3 | CDS | 53591458 | 53591593 | 53591458 | ID=Msa0818120-mRNA-1:cds;Parent=Msa0818120-mRNA-1 |
| chr5_3 | CDS | 53591877 | 53592098 | 53591877 | ID=Msa0818120-mRNA-1:cds;Parent=Msa0818120-mRNA-1 |
| chr5_3 | CDS | 53592192 | 53592412 | 53592192 | ID=Msa0818120-mRNA-1:cds;Parent=Msa0818120-mRNA-1 |
| chr5_3 | CDS | 53592654 | 53592771 | 53592654 | ID=Msa0818120-mRNA-1:cds;Parent=Msa0818120-mRNA-1 |
| chr5_3 | CDS | 53592892 | 53593044 | 53592892 | ID=Msa0818120-mRNA-1:cds;Parent=Msa0818120-mRNA-1 |
| chr5_3 | CDS | 53593117 | 53593203 | 53593117 | ID=Msa0818120-mRNA-1:cds;Parent=Msa0818120-mRNA-1 |
| chr5_3 | CDS | 53593363 | 53593656 | 53593363 | ID=Msa0818120-mRNA-1:cds;Parent=Msa0818120-mRNA-1 |
| chr5_3 | three_prime_UTR | 53593657 | 53593960 | 53593657 | ID=Msa0818120-mRNA-1:three_prime_utr;Parent=Msa0818120-mRNA-1 |
| Gene Sequence |
| Protein sequence |
