AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0819190


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0819190 MtrunA17_Chr5g0438151 82.967 364 20 2 1 322 1 364 0.0 592
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0819190 AT5G48220.1 61.254 351 85 6 14 322 11 352 1.82e-143 410
Msa0819190 AT5G48220.3 65.064 312 66 3 53 322 27 337 5.66e-142 405
Msa0819190 AT5G48220.4 66.436 289 55 2 76 322 1 289 1.47e-136 390
Msa0819190 AT5G48220.2 66.436 289 55 2 76 322 1 289 1.47e-136 390
Msa0819190 AT2G04400.1 59.509 326 88 4 41 322 49 374 8.06e-129 374

Find 93 sgRNAs with CRISPR-Local

Find 455 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAGGGAAGCTTTGAAAATT+TGG 0.165193 5_3:-55319259 Msa0819190:intron
CAAGAAGTGTTGTTGTTAAA+AGG 0.204047 5_3:+55322536 None:intergenic
GTTTAGATGGTTGGGGAATC+TGG 0.267921 5_3:-55318188 Msa0819190:intron
TTCTCCTTATTCTTATACCT+TGG 0.277135 5_3:+55321587 None:intergenic
AGGGAATTCGATCGTGTTCT+TGG 0.315417 5_3:-55318511 Msa0819190:CDS
AGTTGGAGGAATAGTGGTTC+TGG 0.317340 5_3:+55322348 None:intergenic
CTACCCAAGGTATAAGAATA+AGG 0.335290 5_3:-55321591 Msa0819190:CDS
TGAAAATGCACCTCCTGTTC+GGG 0.336397 5_3:-55321314 Msa0819190:CDS
ATGGATATGTTTAGATGGTT+GGG 0.336646 5_3:-55318196 Msa0819190:intron
AAGGACTGCATCTGCACCTT+TGG 0.337273 5_3:+55319054 None:intergenic
AAAGGTCCTACATAATGATT+AGG 0.338327 5_3:+55321547 None:intergenic
TTGAAAATGCACCTCCTGTT+CGG 0.344054 5_3:-55321315 Msa0819190:CDS
TGTTGTTGTTAAAAGGAAAC+AGG 0.352579 5_3:+55322543 None:intergenic
AAGAAAGAAAACCCTTCTTA+TGG 0.356663 5_3:-55321350 Msa0819190:CDS
TTCTGGTTCAAACATTGAAC+TGG 0.357536 5_3:+55322631 None:intergenic
AGGAATAGTGGTTCTGGGAT+TGG 0.374224 5_3:+55322354 None:intergenic
TCTCCTTATTCTTATACCTT+GGG 0.386336 5_3:+55321588 None:intergenic
TATGGATATGTTTAGATGGT+TGG 0.386602 5_3:-55318197 Msa0819190:intron
TATTTCCCTCGTTCTGCAAC+CGG 0.387527 5_3:+55321518 None:intergenic
AATCAAGGATTCCATTGAAA+AGG 0.396547 5_3:+55322417 None:intergenic
GGAATCAACAATCGTAATCT+TGG 0.405503 5_3:-55318466 Msa0819190:intron
GTTGGAGGAATAGTGGTTCT+GGG 0.405718 5_3:+55322349 None:intergenic
AAGGTCCTACATAATGATTA+GGG 0.406698 5_3:+55321548 None:intergenic
TAATGAACGAACTGGATTGC+CGG 0.409949 5_3:-55321266 Msa0819190:CDS
GTAAAACAGCGGCAATTAGA+AGG 0.423033 5_3:+55319035 None:intergenic
TTGGAGTTAATAAGAAATGC+TGG 0.428736 5_3:-55319240 Msa0819190:CDS
GACTTGAGTTGGAGGAATAG+TGG 0.436368 5_3:+55322342 None:intergenic
CGATCGTGTTCTTGGAATAG+AGG 0.438551 5_3:-55318503 Msa0819190:CDS
GTTACCCTTGAGAGAAATCA+AGG 0.441183 5_3:+55322402 None:intergenic
ACCACGAAGAAGCTTCTTGA+AGG 0.446760 5_3:-55318327 Msa0819190:CDS
TCCTTCAAGAAGCTTCTTCG+TGG 0.451429 5_3:+55318326 None:intergenic
GGTTGAAGCTCTCAAAGTTA+AGG 0.456983 5_3:-55321650 Msa0819190:CDS
AGAAAACCCTTCTTATGGTT+AGG 0.458363 5_3:-55321345 Msa0819190:CDS
ATTGTAGCCGAACCTTCATT+AGG 0.459178 5_3:+55321694 None:intergenic
TGAACGACAATCTGTGAAAT+CGG 0.460025 5_3:-55322602 Msa0819190:five_prime_UTR
ATAGAGGGCGTTGAGCTCAT+TGG 0.461415 5_3:-55318487 Msa0819190:CDS
TGAATTCTTTGCACAACAAA+GGG 0.461733 5_3:+55319110 None:intergenic
AATAAGAAATGCTGGAGTAA+AGG 0.463960 5_3:-55319232 Msa0819190:intron
GTTAAGATATGCAAATTACT+TGG 0.466429 5_3:-55318989 Msa0819190:CDS
GATATGCAAATTACTTGGAC+TGG 0.466507 5_3:-55318984 Msa0819190:CDS
CTATAAGTATTGACTTGAGT+TGG 0.466810 5_3:+55322331 None:intergenic
AAGAATTCATTATAGATGCT+TGG 0.471977 5_3:-55319096 Msa0819190:CDS
AGTAGGAATGTTTCATAATG+AGG 0.474718 5_3:-55321620 Msa0819190:CDS
GGCGGAGCCTAATGAAGGTT+CGG 0.479822 5_3:-55321701 Msa0819190:CDS
TTCTGCAACCGGAATTGAAA+AGG 0.484408 5_3:+55321529 None:intergenic
GCCCCAATAAAATCCCGAAC+AGG 0.484947 5_3:+55321301 None:intergenic
GGAATCCTTGATTTCTCTCA+AGG 0.486941 5_3:-55322407 Msa0819190:CDS
AGGGCAGCTAATGAACGAAC+TGG 0.487175 5_3:-55321274 Msa0819190:CDS
AGCTCTCAAAGTTAAGGAAT+GGG 0.487529 5_3:-55321644 Msa0819190:CDS
GATTCCATTGAAAAGGGTAA+TGG 0.491463 5_3:+55322424 None:intergenic
AATGAACGAACTGGATTGCC+GGG 0.495625 5_3:-55321265 Msa0819190:CDS
ATGAATTCTTTGCACAACAA+AGG 0.499202 5_3:+55319109 None:intergenic
AAGCTCTCAAAGTTAAGGAA+TGG 0.499434 5_3:-55321645 Msa0819190:CDS
ATCAAGGATTCCATTGAAAA+GGG 0.501399 5_3:+55322418 None:intergenic
ATAAGGAGAAGACCACCAAC+TGG 0.508374 5_3:-55321574 Msa0819190:CDS
GATTAGGCGGAGCCTAATGA+AGG 0.513132 5_3:-55321706 Msa0819190:intron
TCGGCTACAATAGCCACATC+TGG 0.513917 5_3:-55321682 Msa0819190:CDS
TCTCTCAAGATGCCTCTACT+TGG 0.515966 5_3:+55321214 None:intergenic
TAAGTATTGACTTGAGTTGG+AGG 0.516113 5_3:+55322334 None:intergenic
CTCTACTATGCTCGATCCAA+AGG 0.519675 5_3:-55319070 Msa0819190:CDS
GGGCCTTCCTAACCATAAGA+AGG 0.519948 5_3:+55321338 None:intergenic
ACAACACAACATAACCTCTT+CGG 0.521063 5_3:-55322497 Msa0819190:five_prime_UTR
AAAGTTAAGGAATGGGAAGT+AGG 0.522034 5_3:-55321637 Msa0819190:CDS
AACCCTTCTTATGGTTAGGA+AGG 0.523675 5_3:-55321341 Msa0819190:CDS
ATGTATTTGATGTCAAGATC+AGG 0.527017 5_3:+55319013 None:intergenic
TTGACTTCAGCAATCAATCC+CGG 0.531405 5_3:+55321247 None:intergenic
TGGATATGTTTAGATGGTTG+GGG 0.532058 5_3:-55318195 Msa0819190:intron
ATTGCTTATGTACAAGAAGC+AGG 0.536943 5_3:-55318146 Msa0819190:CDS
TAATGTAGGTGCACGATGAG+AGG 0.569999 5_3:-55318531 Msa0819190:intron
TGTACATAAGCAATGTCTGC+AGG 0.570301 5_3:+55318155 None:intergenic
GGCCTTCCTAACCATAAGAA+GGG 0.572417 5_3:+55321339 None:intergenic
TCAATTCCGGTTGCAGAACG+AGG 0.575802 5_3:-55321524 Msa0819190:CDS
GATCGTGTTCTTGGAATAGA+GGG 0.577340 5_3:-55318502 Msa0819190:CDS
CCAATAAAATCCCGAACAGG+AGG 0.579688 5_3:+55321304 None:intergenic
ATTGATTGCTGAAGTCAAGA+AGG 0.582300 5_3:-55321242 Msa0819190:CDS
AATGTAGGTGCACGATGAGA+GGG 0.584902 5_3:-55318530 Msa0819190:intron
AATGAGGTTGCTGCTACCCA+AGG 0.588159 5_3:-55321604 Msa0819190:CDS
TTGTGTTGTTACATTTACAA+AGG 0.591028 5_3:+55322511 None:intergenic
GTTCAAACATTGAACTGGGT+AGG 0.591848 5_3:+55322636 None:intergenic
CAATTCCGGTTGCAGAACGA+GGG 0.593820 5_3:-55321523 Msa0819190:CDS
TGATCTTGACATCAAATACA+TGG 0.599333 5_3:-55319011 Msa0819190:CDS
TGGACTGGCAGCTCTTGTTG+AGG 0.600595 5_3:-55318969 Msa0819190:intron
TGGGATTGGAAGAGAACGAA+GGG 0.606231 5_3:+55322368 None:intergenic
AACCACAGATTCACCAGATG+TGG 0.614744 5_3:+55321669 None:intergenic
TCTGGTTCAAACATTGAACT+GGG 0.620435 5_3:+55322632 None:intergenic
GAATCCTTGATTTCTCTCAA+GGG 0.623977 5_3:-55322406 Msa0819190:CDS
AAGAAGGCTTCACCAAGTAG+AGG 0.628444 5_3:-55321226 Msa0819190:CDS
AAGCTTCTTGAAGGAGAGCG+AGG 0.630844 5_3:-55318318 Msa0819190:CDS
GGTCCTACATAATGATTAGG+GGG 0.633768 5_3:+55321550 None:intergenic
AGCCACATCTGGTGAATCTG+TGG 0.650573 5_3:-55321671 Msa0819190:CDS
AGGTCCTACATAATGATTAG+GGG 0.661433 5_3:+55321549 None:intergenic
CTGGGATTGGAAGAGAACGA+AGG 0.670959 5_3:+55322367 None:intergenic
GTCAAGATCAGGTAAAACAG+CGG 0.709047 5_3:+55319024 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACATTATATAAAACAAAAA+GGG + chr5_3:55316535-55316554 None:intergenic 10.0%
!! AAACATTATATAAAACAAAA+AGG + chr5_3:55316536-55316555 None:intergenic 10.0%
!!! TGTTTTATATAATGTTTTTT+TGG - chr5_3:55316539-55316558 Msa0819190:intron 10.0%
!! TAACTATAAAAATTTGTATA+AGG + chr5_3:55320495-55320514 None:intergenic 10.0%
!!! TTTTTTGTTGTATATTTATC+TGG - chr5_3:55316219-55316238 Msa0819190:intron 15.0%
!!! ATAATGTTTTTGTGATTATT+TGG - chr5_3:55316368-55316387 Msa0819190:intron 15.0%
!!! TTGATGCATATTATTTTTTT+TGG - chr5_3:55316494-55316513 Msa0819190:intron 15.0%
!!! TTTTTTTTGGTTTAATTTTG+AGG - chr5_3:55316507-55316526 Msa0819190:intron 15.0%
!!! ATTTTTTGTATTTAATTGAG+AGG - chr5_3:55316668-55316687 Msa0819190:intron 15.0%
!! AATATGATCAAAATCAAAAA+GGG + chr5_3:55316696-55316715 None:intergenic 15.0%
!! AAATATGATCAAAATCAAAA+AGG + chr5_3:55316697-55316716 None:intergenic 15.0%
!!! TTTGATTTTGATCATATTTT+TGG - chr5_3:55316698-55316717 Msa0819190:intron 15.0%
!!! TTGATTTTGATCATATTTTT+GGG - chr5_3:55316699-55316718 Msa0819190:intron 15.0%
!! TTAATGTAAATATGAACTTA+TGG - chr5_3:55317798-55317817 Msa0819190:intron 15.0%
!!! AAGTTTATTTTGTATAGTTA+CGG + chr5_3:55319716-55319735 None:intergenic 15.0%
!! TGTCTTAATATTTATACTTA+AGG - chr5_3:55320026-55320045 Msa0819190:intron 15.0%
!! ACTTTAAACTAATGATTATA+TGG - chr5_3:55320228-55320247 Msa0819190:intron 15.0%
!!! TATTTTTGTGAACATAATTA+AGG + chr5_3:55321810-55321829 None:intergenic 15.0%
!! TTAATTATGTTCACAAAAAT+AGG - chr5_3:55321809-55321828 Msa0819190:intron 15.0%
!! AATATAAAGATATTAGTGAA+AGG - chr5_3:55322060-55322079 Msa0819190:intron 15.0%
!!! GATTTGTTATTTTGTTTGTA+TGG + chr5_3:55315881-55315900 None:intergenic 20.0%
!! AACAATAAAGCAATACAAAA+AGG + chr5_3:55316201-55316220 None:intergenic 20.0%
!!! TTTCTCTCATTTTTCTTTTT+GGG - chr5_3:55316243-55316262 Msa0819190:intron 20.0%
!!! ATTATTTGGTGTTATGATTA+TGG - chr5_3:55316382-55316401 Msa0819190:intron 20.0%
!!! ATTATTTGCTGTTTTGATTA+AGG - chr5_3:55316562-55316581 Msa0819190:intron 20.0%
!!! GATTATTTGATGTTTTGATT+AGG - chr5_3:55316721-55316740 Msa0819190:intron 20.0%
!! AAAGGAATAGTTAAATAATC+TGG + chr5_3:55317577-55317596 None:intergenic 20.0%
!! AGTTCATATTTACATTAACT+GGG + chr5_3:55317796-55317815 None:intergenic 20.0%
!! AAGTTCATATTTACATTAAC+TGG + chr5_3:55317797-55317816 None:intergenic 20.0%
!! TAAAAAAGAAAAAACAGAAC+AGG + chr5_3:55318012-55318031 None:intergenic 20.0%
!!! TGTTATTAAGTCGATTATTT+TGG - chr5_3:55318042-55318061 Msa0819190:intron 20.0%
!!! GTTTGTTTTGTGAAATTTTA+AGG + chr5_3:55318188-55318207 None:intergenic 20.0%
!! GAAAAAGAAATCTTAAATAG+TGG + chr5_3:55318411-55318430 None:intergenic 20.0%
!!! TTTTATCATTCATTTCATAC+TGG - chr5_3:55318695-55318714 Msa0819190:intron 20.0%
!! TACTTGCAAGTATAATAAAT+AGG + chr5_3:55319659-55319678 None:intergenic 20.0%
!!! TTGGATTTATATCTTTCTTT+TGG - chr5_3:55319876-55319895 Msa0819190:intron 20.0%
!! GAAATTTAATGCTTTAATGT+AGG - chr5_3:55319898-55319917 Msa0819190:intron 20.0%
!! ATTATATGGATATGTTTAGA+TGG - chr5_3:55320242-55320261 Msa0819190:intron 20.0%
!! TTACATAGGAGATTAAATTA+AGG - chr5_3:55320765-55320784 Msa0819190:intron 20.0%
!! TTAATACAAGCAAATACAAA+AGG + chr5_3:55320808-55320827 None:intergenic 20.0%
!! TGCATAATATACTACATTAT+GGG + chr5_3:55320965-55320984 None:intergenic 20.0%
!! ATGCATAATATACTACATTA+TGG + chr5_3:55320966-55320985 None:intergenic 20.0%
!! TTGTTACATAGTACAAAAAA+CGG - chr5_3:55321113-55321132 Msa0819190:intron 20.0%
!! TTGCATATATAAAGATAGAA+GGG + chr5_3:55321727-55321746 None:intergenic 20.0%
!! ATTGCATATATAAAGATAGA+AGG + chr5_3:55321728-55321747 None:intergenic 20.0%
!! TATATAGCATGAAAAGAATA+AGG - chr5_3:55321952-55321971 Msa0819190:intron 20.0%
!!! TGTCATTATTTTCTTCAATT+TGG + chr5_3:55321993-55322012 None:intergenic 20.0%
!! TTCAAATGTGATAATATCAA+TGG - chr5_3:55322034-55322053 Msa0819190:intron 20.0%
!!! TCTATGACTAGTTTATAATT+GGG + chr5_3:55322112-55322131 None:intergenic 20.0%
!! AGAATACAAAACAAAAATTG+AGG + chr5_3:55322583-55322602 None:intergenic 20.0%
!! TTGTGTTGTTACATTTACAA+AGG + chr5_3:55315935-55315954 None:intergenic 25.0%
!!! CTTTCTCTCATTTTTCTTTT+TGG - chr5_3:55316242-55316261 Msa0819190:intron 25.0%
!!! TTCTCTCATTTTTCTTTTTG+GGG - chr5_3:55316244-55316263 Msa0819190:intron 25.0%
!! TGGTTTAGTTGAATTTTGAA+TGG - chr5_3:55316270-55316289 Msa0819190:intron 25.0%
! AAAACTAAATTCACTAGATG+TGG + chr5_3:55316618-55316637 None:intergenic 25.0%
!!! TATTTGATGTTTTGATTAGG+CGG - chr5_3:55316724-55316743 Msa0819190:intron 25.0%
! TTTAACCAATGAGATTCAAA+GGG + chr5_3:55317548-55317567 None:intergenic 25.0%
! ATTTAACCAATGAGATTCAA+AGG + chr5_3:55317549-55317568 None:intergenic 25.0%
! GTTCATATTTACATTAACTG+GGG + chr5_3:55317795-55317814 None:intergenic 25.0%
! ATGTAAATATGAACTTATGG+AGG - chr5_3:55317801-55317820 Msa0819190:intron 25.0%
!! TTATCAGTTGATATCAAGTA+CGG - chr5_3:55317900-55317919 Msa0819190:intron 25.0%
! CAAATGAACTTCCAAAAAAT+AGG + chr5_3:55317930-55317949 None:intergenic 25.0%
!!! AGAAGTATTGCTTCAAAATA+AGG - chr5_3:55317985-55318004 Msa0819190:intron 25.0%
!!! GAAGTATTGCTTCAAAATAA+GGG - chr5_3:55317986-55318005 Msa0819190:intron 25.0%
! GAAGAAATAAAAACTGACAA+TGG + chr5_3:55318126-55318145 None:intergenic 25.0%
!!! GTTTTTATTTCTTCTCTTCA+CGG - chr5_3:55318132-55318151 Msa0819190:intron 25.0%
!!! TGAATTGTTGATTCAGTTTT+GGG - chr5_3:55318271-55318290 Msa0819190:intron 25.0%
!!! TAATATTTTGAGACCAAAAG+AGG - chr5_3:55318442-55318461 Msa0819190:intron 25.0%
!!! AATATTTTGAGACCAAAAGA+GGG - chr5_3:55318443-55318462 Msa0819190:intron 25.0%
!!! AACAGATGAGAAGTATTTTA+AGG - chr5_3:55319029-55319048 Msa0819190:CDS 25.0%
! GTAGAATCAATCTTATATCA+AGG + chr5_3:55319260-55319279 None:intergenic 25.0%
!! GGTCTATATAAAGTATTAGA+TGG + chr5_3:55319282-55319301 None:intergenic 25.0%
! AAGAATTCATTATAGATGCT+TGG - chr5_3:55319347-55319366 Msa0819190:intron 25.0%
! GTTAAGATATGCAAATTACT+TGG - chr5_3:55319454-55319473 Msa0819190:intron 25.0%
! AAATCAGTCATAACTATTCA+AGG + chr5_3:55319748-55319767 None:intergenic 25.0%
! TTCAACAGATATAAGAAACA+TGG + chr5_3:55319854-55319873 None:intergenic 25.0%
! TTCTTATATCTGTTGAATCT+TGG - chr5_3:55319857-55319876 Msa0819190:intron 25.0%
!! GTCAGATCTTTAAAAACATT+TGG - chr5_3:55320528-55320547 Msa0819190:intron 25.0%
!!! AATTGTTTCTGATTTGTTGA+CGG - chr5_3:55320583-55320602 Msa0819190:intron 25.0%
! TGATTTGAATATACAGAAAG+TGG + chr5_3:55321479-55321498 None:intergenic 25.0%
!!! AAAGATAGTTCTGAGAAAAT+TGG + chr5_3:55321524-55321543 None:intergenic 25.0%
! TAGGAGAAGGAAAAATATAT+AGG - chr5_3:55321608-55321627 Msa0819190:CDS 25.0%
! TGCATATATAAAGATAGAAG+GGG + chr5_3:55321726-55321745 None:intergenic 25.0%
!! AAATGATAATGAGTATGTTG+AGG + chr5_3:55321907-55321926 None:intergenic 25.0%
! AAAATAATGACATAATACCG+TGG - chr5_3:55322001-55322020 Msa0819190:intron 25.0%
! ATTTGAATGAATAAGTACCA+CGG + chr5_3:55322021-55322040 None:intergenic 25.0%
!!! CTCTATGACTAGTTTATAAT+TGG + chr5_3:55322113-55322132 None:intergenic 25.0%
! GTAGATATGGATAAATATTG+GGG + chr5_3:55322561-55322580 None:intergenic 25.0%
! GGTAGATATGGATAAATATT+GGG + chr5_3:55322562-55322581 None:intergenic 25.0%
! AGGTAGATATGGATAAATAT+TGG + chr5_3:55322563-55322582 None:intergenic 25.0%
! AACAAAAATTGAGGTAGATA+TGG + chr5_3:55322574-55322593 None:intergenic 25.0%
! TGTTGTTGTTAAAAGGAAAC+AGG + chr5_3:55315903-55315922 None:intergenic 30.0%
!! CAAGAAGTGTTGTTGTTAAA+AGG + chr5_3:55315910-55315929 None:intergenic 30.0%
! TGAAATTTTTGTAACCGAAG+AGG + chr5_3:55315963-55315982 None:intergenic 30.0%
! TTTTCCATTACCCTTTTCAA+TGG - chr5_3:55316015-55316034 Msa0819190:intron 30.0%
ATCAAGGATTCCATTGAAAA+GGG + chr5_3:55316028-55316047 None:intergenic 30.0%
AATCAAGGATTCCATTGAAA+AGG + chr5_3:55316029-55316048 None:intergenic 30.0%
!! CTATAAGTATTGACTTGAGT+TGG + chr5_3:55316115-55316134 None:intergenic 30.0%
!! ATTTGGTGTTATGATTATGG+TGG - chr5_3:55316385-55316404 Msa0819190:intron 30.0%
ATCAACACAATTCACAAGAT+GGG + chr5_3:55316439-55316458 None:intergenic 30.0%
AATCAACACAATTCACAAGA+TGG + chr5_3:55316440-55316459 None:intergenic 30.0%
AGTAGGAATGTTTCATAATG+AGG - chr5_3:55316823-55316842 Msa0819190:intron 30.0%
TCTCCTTATTCTTATACCTT+GGG + chr5_3:55316858-55316877 None:intergenic 30.0%
TTCTCCTTATTCTTATACCT+TGG + chr5_3:55316859-55316878 None:intergenic 30.0%
AAGGTCCTACATAATGATTA+GGG + chr5_3:55316898-55316917 None:intergenic 30.0%
AAAGGTCCTACATAATGATT+AGG + chr5_3:55316899-55316918 None:intergenic 30.0%
TTGTGCTTATGTGAACTATT+TGG - chr5_3:55317059-55317078 Msa0819190:intron 30.0%
AAGAAAGAAAACCCTTCTTA+TGG - chr5_3:55317093-55317112 Msa0819190:intron 30.0%
GGAAATCAAAACAAACTTAC+TGG + chr5_3:55317265-55317284 None:intergenic 30.0%
ATCTTTCTACTGATATCATG+TGG - chr5_3:55317303-55317322 Msa0819190:intron 30.0%
TCTTTCTACTGATATCATGT+GGG - chr5_3:55317304-55317323 Msa0819190:intron 30.0%
GATTCAGTGTTGTCAAATAA+CGG - chr5_3:55317360-55317379 Msa0819190:intron 30.0%
TTAACCAATGAGATTCAAAG+GGG + chr5_3:55317547-55317566 None:intergenic 30.0%
! GAATCTCATTGGTTAAATTC+AGG - chr5_3:55317551-55317570 Msa0819190:intron 30.0%
TAGCAAGTAGATTTAGCAAA+AGG + chr5_3:55317595-55317614 None:intergenic 30.0%
!! TTTTATTTGAGTCATGCTTG+CGG - chr5_3:55317625-55317644 Msa0819190:intron 30.0%
!!! TTGTTTTGATCATCTAATGC+AGG - chr5_3:55317689-55317708 Msa0819190:intron 30.0%
!!! AGTACGGTATACCTATTTTT+TGG - chr5_3:55317916-55317935 Msa0819190:intron 30.0%
TGTTTCTCAATAACTAGTAC+AGG - chr5_3:55317948-55317967 Msa0819190:intron 30.0%
TGTTTGATAAGTTGCTTGAA+GGG + chr5_3:55318103-55318122 None:intergenic 30.0%
! AACAAACGTTGAAGTTGTTT+TGG - chr5_3:55318201-55318220 Msa0819190:intron 30.0%
!!! CTGAATTGTTGATTCAGTTT+TGG - chr5_3:55318270-55318289 Msa0819190:intron 30.0%
!! GAACTTTTAGGAAACTTAAG+AGG - chr5_3:55318465-55318484 Msa0819190:intron 30.0%
! AAACACTTTTCATTCACCTT+GGG - chr5_3:55318528-55318547 Msa0819190:intron 30.0%
TTTCTCTCTTGATTTCTCTT+AGG - chr5_3:55318583-55318602 Msa0819190:intron 30.0%
TGAAAAAGGGGTAGAAATTA+TGG - chr5_3:55318629-55318648 Msa0819190:intron 30.0%
CAATATTTGTTTACCCAGTT+TGG + chr5_3:55318763-55318782 None:intergenic 30.0%
CAAACTGGGTAAACAAATAT+TGG - chr5_3:55318761-55318780 Msa0819190:intron 30.0%
TATTCTCTTACCTGTAATCT+TGG - chr5_3:55318797-55318816 Msa0819190:intron 30.0%
CAAACATAATCCAAGATTAC+AGG + chr5_3:55318810-55318829 None:intergenic 30.0%
ATGTGTGGAACAAATATCAA+AGG + chr5_3:55318899-55318918 None:intergenic 30.0%
AGGTTGAATTCAGAACATAA+TGG - chr5_3:55318939-55318958 Msa0819190:intron 30.0%
ATTGCTCAATCTTATGAGAA+AGG - chr5_3:55318982-55319001 Msa0819190:CDS 30.0%
CACTGCTAAACGTTAATATT+TGG - chr5_3:55319095-55319114 Msa0819190:CDS 30.0%
!! TGATTTGTGTTTTCTTGTTC+AGG - chr5_3:55319166-55319185 Msa0819190:intron 30.0%
! GATTTGTGTTTTCTTGTTCA+GGG - chr5_3:55319167-55319186 Msa0819190:intron 30.0%
TTGGAGTTAATAAGAAATGC+TGG - chr5_3:55319203-55319222 Msa0819190:intron 30.0%
AATAAGAAATGCTGGAGTAA+AGG - chr5_3:55319211-55319230 Msa0819190:intron 30.0%
TGAATTCTTTGCACAACAAA+GGG + chr5_3:55319336-55319355 None:intergenic 30.0%
ATGAATTCTTTGCACAACAA+AGG + chr5_3:55319337-55319356 None:intergenic 30.0%
ATGTATTTGATGTCAAGATC+AGG + chr5_3:55319433-55319452 None:intergenic 30.0%
TGATCTTGACATCAAATACA+TGG - chr5_3:55319432-55319451 Msa0819190:intron 30.0%
AAAAAATGTTGTATTCCAGC+CGG + chr5_3:55319545-55319564 None:intergenic 30.0%
!! TTACGGTTCTGAAGTAAATT+TGG + chr5_3:55319699-55319718 None:intergenic 30.0%
TATGGATATGTTTAGATGGT+TGG - chr5_3:55320246-55320265 Msa0819190:intron 30.0%
ATGGATATGTTTAGATGGTT+GGG - chr5_3:55320247-55320266 Msa0819190:intron 30.0%
AAAATTACGGACATCGATAT+TGG + chr5_3:55320458-55320477 None:intergenic 30.0%
!! AATTTTTCACAGGTTTTGGT+GGG - chr5_3:55320659-55320678 Msa0819190:intron 30.0%
!! TTGAGTTGACTGATTTACAT+AGG - chr5_3:55320751-55320770 Msa0819190:intron 30.0%
AGTCTGCATTTATAACTTAG+AGG - chr5_3:55321041-55321060 Msa0819190:intron 30.0%
TATAACTTAGAGGTGAAAGT+TGG - chr5_3:55321051-55321070 Msa0819190:intron 30.0%
ATCATCGAATTCAATTTGAG+TGG - chr5_3:55321156-55321175 Msa0819190:intron 30.0%
ACATATTCTTCTATCTCAAG+TGG - chr5_3:55321237-55321256 Msa0819190:CDS 30.0%
CATATTCTTCTATCTCAAGT+GGG - chr5_3:55321238-55321257 Msa0819190:CDS 30.0%
TAAAGACAGTTTCCAAAACT+GGG + chr5_3:55321423-55321442 None:intergenic 30.0%
!! ATAGTTCTGAGAAAATTGGA+TGG + chr5_3:55321520-55321539 None:intergenic 30.0%
TCAGAAGGAAGTGAAAATAA+AGG + chr5_3:55322309-55322328 None:intergenic 30.0%
! GAACATGATGATGTAGATAT+GGG + chr5_3:55322510-55322529 None:intergenic 30.0%
! AGAACATGATGATGTAGATA+TGG + chr5_3:55322511-55322530 None:intergenic 30.0%
ATATGGATAAATATTGGGGA+AGG + chr5_3:55322557-55322576 None:intergenic 30.0%
!! TGTATGTGTTAATTTGCAGA+TGG + chr5_3:55322615-55322634 None:intergenic 30.0%
! TCTGGTTCAAACATTGAACT+GGG + chr5_3:55315814-55315833 None:intergenic 35.0%
!! TTCTGGTTCAAACATTGAAC+TGG + chr5_3:55315815-55315834 None:intergenic 35.0%
! ATTGTCGTTCATGCATTTTC+TGG + chr5_3:55315832-55315851 None:intergenic 35.0%
TGAACGACAATCTGTGAAAT+CGG - chr5_3:55315841-55315860 Msa0819190:intron 35.0%
ACAACACAACATAACCTCTT+CGG - chr5_3:55315946-55315965 Msa0819190:intron 35.0%
GATTCCATTGAAAAGGGTAA+TGG + chr5_3:55316022-55316041 None:intergenic 35.0%
GAATCCTTGATTTCTCTCAA+GGG - chr5_3:55316037-55316056 Msa0819190:intron 35.0%
!! TAAGTATTGACTTGAGTTGG+AGG + chr5_3:55316112-55316131 None:intergenic 35.0%
!!! CATTTTTCTTTTTGGGGTGT+TGG - chr5_3:55316250-55316269 Msa0819190:intron 35.0%
GAATGGTATATGCGTTCAAT+TGG - chr5_3:55316287-55316306 Msa0819190:intron 35.0%
! ATTATGGTGGAGCATAATGA+AGG - chr5_3:55316398-55316417 Msa0819190:intron 35.0%
TCAACACAATTCACAAGATG+GGG + chr5_3:55316438-55316457 None:intergenic 35.0%
ATTAAGGTGAAGCATGATGA+TGG - chr5_3:55316578-55316597 Msa0819190:intron 35.0%
AAGCTCTCAAAGTTAAGGAA+TGG - chr5_3:55316798-55316817 Msa0819190:intron 35.0%
AGCTCTCAAAGTTAAGGAAT+GGG - chr5_3:55316799-55316818 Msa0819190:intron 35.0%
AAAGTTAAGGAATGGGAAGT+AGG - chr5_3:55316806-55316825 Msa0819190:intron 35.0%
CTACCCAAGGTATAAGAATA+AGG - chr5_3:55316852-55316871 Msa0819190:intron 35.0%
AGGTCCTACATAATGATTAG+GGG + chr5_3:55316897-55316916 None:intergenic 35.0%
! ATGTAGGACCTTTTCAATTC+CGG - chr5_3:55316906-55316925 Msa0819190:intron 35.0%
AGAAAACCCTTCTTATGGTT+AGG - chr5_3:55317098-55317117 Msa0819190:intron 35.0%
ATTGATTGCTGAAGTCAAGA+AGG - chr5_3:55317201-55317220 Msa0819190:intron 35.0%
! CATGTGGGAAATGTTTGTTT+TGG - chr5_3:55317319-55317338 Msa0819190:intron 35.0%
!! AGTAGAGTGTTGTCAAATAG+TGG - chr5_3:55317440-55317459 Msa0819190:intron 35.0%
CAATAACTAGTACAGGTTCA+TGG - chr5_3:55317955-55317974 Msa0819190:intron 35.0%
TGATGCGATGCAAAAATACA+AGG + chr5_3:55318071-55318090 None:intergenic 35.0%
GTGTTTGATAAGTTGCTTGA+AGG + chr5_3:55318104-55318123 None:intergenic 35.0%
!!! AAGTTGTTTTGGTGCAAAAC+TGG - chr5_3:55318212-55318231 Msa0819190:intron 35.0%
! TTCCTAAAAGTTCCCTCTTT+TGG + chr5_3:55318458-55318477 None:intergenic 35.0%
! GAAACACTTTTCATTCACCT+TGG - chr5_3:55318527-55318546 Msa0819190:intron 35.0%
TTTCTCTTAGGATCTCATTG+TGG - chr5_3:55318595-55318614 Msa0819190:intron 35.0%
TTCTCTTAGGATCTCATTGT+GGG - chr5_3:55318596-55318615 Msa0819190:intron 35.0%
GATTACAGGTAAGAGAATAG+AGG + chr5_3:55318796-55318815 None:intergenic 35.0%
TGTTCCACACATCAAATTTG+TGG - chr5_3:55318907-55318926 Msa0819190:intron 35.0%
!! CATAATGGATTCTCTCTTAC+AGG - chr5_3:55318954-55318973 Msa0819190:intron 35.0%
!! TCAGGGAAGCTTTGAAAATT+TGG - chr5_3:55319184-55319203 Msa0819190:intron 35.0%
CTTTATATAGACCATGCTGA+TGG - chr5_3:55319289-55319308 Msa0819190:intron 35.0%
!!! AGGGCACTGCATATTTTTTT+TGG + chr5_3:55319317-55319336 None:intergenic 35.0%
GATATGCAAATTACTTGGAC+TGG - chr5_3:55319459-55319478 Msa0819190:intron 35.0%
TGTTTCCTGAATGTGAATGA+CGG - chr5_3:55319519-55319538 Msa0819190:intron 35.0%
GGAATCAACAATCGTAATCT+TGG - chr5_3:55319977-55319996 Msa0819190:intron 35.0%
!!! TGTGGCTTCTATTTTTTGTG+TGG - chr5_3:55320064-55320083 Msa0819190:intron 35.0%
TGGATATGTTTAGATGGTTG+GGG - chr5_3:55320248-55320267 Msa0819190:intron 35.0%
ATTGCTTATGTACAAGAAGC+AGG - chr5_3:55320297-55320316 Msa0819190:intron 35.0%
! AACTCTCGTCAATTTTTCAC+AGG - chr5_3:55320649-55320668 Msa0819190:intron 35.0%
! CGTCAATTTTTCACAGGTTT+TGG - chr5_3:55320655-55320674 Msa0819190:intron 35.0%
!! CAATTTTTCACAGGTTTTGG+TGG - chr5_3:55320658-55320677 Msa0819190:intron 35.0%
ATTGTGAAACAAAGTGATCC+TGG - chr5_3:55320689-55320708 Msa0819190:intron 35.0%
AAACAAAGTGATCCTGGAAA+GGG - chr5_3:55320695-55320714 Msa0819190:intron 35.0%
AAGGGAATTAGCAATCTCTT+TGG - chr5_3:55320713-55320732 Msa0819190:intron 35.0%
! GTCAACGCAAAAAGATGTTT+TGG + chr5_3:55320863-55320882 None:intergenic 35.0%
!! TACTGTGTTTTAGACTCAGA+TGG - chr5_3:55321367-55321386 Msa0819190:intron 35.0%
CTAAAGACAGTTTCCAAAAC+TGG + chr5_3:55321424-55321443 None:intergenic 35.0%
!! AACTGTCTTTAGAACTGTGT+CGG - chr5_3:55321432-55321451 Msa0819190:intron 35.0%
! ATACAGAAAGTGGTAGTGAA+AGG + chr5_3:55321469-55321488 None:intergenic 35.0%
ACATCCTTCACATGACTTAT+GGG - chr5_3:55321555-55321574 Msa0819190:CDS 35.0%
CTTATGGGGATGATGATATA+AGG - chr5_3:55321570-55321589 Msa0819190:CDS 35.0%
AAGGAAGAGATAGAAGTCAT+AGG - chr5_3:55321589-55321608 Msa0819190:CDS 35.0%
! TGTGCTCTTATGTCTGTTTT+TGG - chr5_3:55321839-55321858 Msa0819190:intron 35.0%
TGTGATCATACAAGAGAATG+CGG + chr5_3:55321881-55321900 None:intergenic 35.0%
ACAAAACACATGCATCTATC+TGG - chr5_3:55322174-55322193 Msa0819190:intron 35.0%
!!! ATGCATCTATCTGGTTTTCA+TGG - chr5_3:55322183-55322202 Msa0819190:intron 35.0%
AGTGAAAATAAAGGACCTAG+AGG + chr5_3:55322300-55322319 None:intergenic 35.0%
TCAGGAGGAAGTGAAAATAA+AGG + chr5_3:55322417-55322436 None:intergenic 35.0%
GTTCAAACATTGAACTGGGT+AGG + chr5_3:55315810-55315829 None:intergenic 40.0%
GGAATCCTTGATTTCTCTCA+AGG - chr5_3:55316036-55316055 Msa0819190:intron 40.0%
GTTACCCTTGAGAGAAATCA+AGG + chr5_3:55316044-55316063 None:intergenic 40.0%
ATTGTAGCCGAACCTTCATT+AGG + chr5_3:55316752-55316771 None:intergenic 40.0%
GGTTGAAGCTCTCAAAGTTA+AGG - chr5_3:55316793-55316812 Msa0819190:intron 40.0%
GGTCCTACATAATGATTAGG+GGG + chr5_3:55316896-55316915 None:intergenic 40.0%
TTCTGCAACCGGAATTGAAA+AGG + chr5_3:55316917-55316936 None:intergenic 40.0%
AAATACACCGCGTAACATCT+TGG - chr5_3:55316943-55316962 Msa0819190:intron 40.0%
ATCTCTTCCAAGATGTTACG+CGG + chr5_3:55316953-55316972 None:intergenic 40.0%
ACATCTTGGAAGAGATTGTG+TGG - chr5_3:55316957-55316976 Msa0819190:intron 40.0%
AACCCTTCTTATGGTTAGGA+AGG - chr5_3:55317102-55317121 Msa0819190:intron 40.0%
!! AACAGGAGGTGCATTTTCAA+GGG + chr5_3:55317128-55317147 None:intergenic 40.0%
TTGAAAATGCACCTCCTGTT+CGG - chr5_3:55317128-55317147 Msa0819190:intron 40.0%
! CTCCTGTTCGGGATTTTATT+GGG - chr5_3:55317140-55317159 Msa0819190:intron 40.0%
! TCCTGTTCGGGATTTTATTG+GGG - chr5_3:55317141-55317160 Msa0819190:intron 40.0%
!! GGATTTTATTGGGGCTCTAA+GGG - chr5_3:55317150-55317169 Msa0819190:intron 40.0%
TAATGAACGAACTGGATTGC+CGG - chr5_3:55317177-55317196 Msa0819190:intron 40.0%
TTGACTTCAGCAATCAATCC+CGG + chr5_3:55317199-55317218 None:intergenic 40.0%
GATTTCCACTGTGATCTTTG+AGG - chr5_3:55317278-55317297 Msa0819190:intron 40.0%
GATAACCTCAAAGATCACAG+TGG + chr5_3:55317286-55317305 None:intergenic 40.0%
!!! ATGTTTGTTTTGGCTCCAAC+TGG - chr5_3:55317329-55317348 Msa0819190:intron 40.0%
CTGAATCAGATATAGCCAGT+TGG + chr5_3:55317347-55317366 None:intergenic 40.0%
! AATAACGGCTCTAGCACTAT+AGG - chr5_3:55317375-55317394 Msa0819190:intron 40.0%
! ATAACGGCTCTAGCACTATA+GGG - chr5_3:55317376-55317395 Msa0819190:intron 40.0%
TTGCTGATCACAGAAACTAG+CGG + chr5_3:55317511-55317530 None:intergenic 40.0%
TAGACCCCTTTGAATCTCAT+TGG - chr5_3:55317540-55317559 Msa0819190:intron 40.0%
TTGTGCTTGTCTAAGTCATG+TGG + chr5_3:55317854-55317873 None:intergenic 40.0%
GATAAGTTGCTTGAAGGGTT+TGG + chr5_3:55318098-55318117 None:intergenic 40.0%
ACACACAACAAGCAAAACAG+TGG + chr5_3:55318164-55318183 None:intergenic 40.0%
! GACCAAAAGAGGGAACTTTT+AGG - chr5_3:55318453-55318472 Msa0819190:intron 40.0%
TTAGGAAACTTAAGAGGCCA+AGG - chr5_3:55318471-55318490 Msa0819190:CDS 40.0%
TAGGAAACTTAAGAGGCCAA+GGG - chr5_3:55318472-55318491 Msa0819190:CDS 40.0%
!! TGCTTTTGGGTGAGATTCTT+GGG - chr5_3:55318500-55318519 Msa0819190:CDS 40.0%
! TGGGTTGAACGACTTGAAAA+AGG - chr5_3:55318615-55318634 Msa0819190:intron 40.0%
GGGTTGAACGACTTGAAAAA+GGG - chr5_3:55318616-55318635 Msa0819190:intron 40.0%
GGTTGAACGACTTGAAAAAG+GGG - chr5_3:55318617-55318636 Msa0819190:intron 40.0%
ACAGTCTCAAGCAACAACAA+CGG + chr5_3:55318862-55318881 None:intergenic 40.0%
! TGTTGTTGCTTGAGACTGTT+TGG - chr5_3:55318863-55318882 Msa0819190:intron 40.0%
GCTTGAGACTGTTTGGTTAT+TGG - chr5_3:55318870-55318889 Msa0819190:intron 40.0%
CAGACCACAAATTTGATGTG+TGG + chr5_3:55318914-55318933 None:intergenic 40.0%
CACACATCAAATTTGTGGTC+TGG - chr5_3:55318912-55318931 Msa0819190:intron 40.0%
! CAAATTTGTGGTCTGGTTTG+AGG - chr5_3:55318919-55318938 Msa0819190:intron 40.0%
GCTCAATCTTATGAGAAAGG+TGG - chr5_3:55318985-55319004 Msa0819190:CDS 40.0%
!!! TTTTTTTGGTGCCATCAGCA+TGG + chr5_3:55319303-55319322 None:intergenic 40.0%
GTAAAACAGCGGCAATTAGA+AGG + chr5_3:55319411-55319430 None:intergenic 40.0%
GTCAAGATCAGGTAAAACAG+CGG + chr5_3:55319422-55319441 None:intergenic 40.0%
GATCGTGTTCTTGGAATAGA+GGG - chr5_3:55319941-55319960 Msa0819190:intron 40.0%
TGTACATAAGCAATGTCTGC+AGG + chr5_3:55320291-55320310 None:intergenic 40.0%
TCATAAACACAACCACGATG+AGG - chr5_3:55320370-55320389 Msa0819190:intron 40.0%
CATAAACTAAAGCCTCATCG+TGG + chr5_3:55320385-55320404 None:intergenic 40.0%
GAAACAAAGTGATCCTGGAA+AGG - chr5_3:55320694-55320713 Msa0819190:intron 40.0%
AGATTGCTAATTCCCTTTCC+AGG + chr5_3:55320710-55320729 None:intergenic 40.0%
TTGAGTGGTTGAAATGTAGC+AGG - chr5_3:55321171-55321190 Msa0819190:intron 40.0%
TGAGTGGTTGAAATGTAGCA+GGG - chr5_3:55321172-55321191 Msa0819190:intron 40.0%
TTTAGACTCAGATGGAGCTT+CGG - chr5_3:55321375-55321394 Msa0819190:intron 40.0%
!! ACTGTCTTTAGAACTGTGTC+GGG - chr5_3:55321433-55321452 Msa0819190:intron 40.0%
TCTGAGAAAATTGGATGGTG+TGG + chr5_3:55321515-55321534 None:intergenic 40.0%
CACATCCTTCACATGACTTA+TGG - chr5_3:55321554-55321573 Msa0819190:CDS 40.0%
CATCCTTCACATGACTTATG+GGG - chr5_3:55321556-55321575 Msa0819190:CDS 40.0%
GAGATAGAAGTCATAGGAGA+AGG - chr5_3:55321595-55321614 Msa0819190:CDS 40.0%
GAAAATAAAGGACCTAGAGG+AGG + chr5_3:55322297-55322316 None:intergenic 40.0%
GAAGGTCAAGGAGAAACAAA+AGG + chr5_3:55322372-55322391 None:intergenic 40.0%
GGAAGTGAAAATAAAGGACC+CGG + chr5_3:55322303-55322322 None:intergenic 40.0%
ACACCTAGAAGAAGAGGAAA+TGG + chr5_3:55322468-55322487 None:intergenic 40.0%
ATGATGTAGATATGGGAGGT+TGG + chr5_3:55322503-55322522 None:intergenic 40.0%
! CATGATGATGTAGATATGGG+AGG + chr5_3:55322507-55322526 None:intergenic 40.0%
GATAAATATTGGGGAAGGAG+TGG + chr5_3:55322552-55322571 None:intergenic 40.0%
TGGGATTGGAAGAGAACGAA+GGG + chr5_3:55316078-55316097 None:intergenic 45.0%
!! AGGAATAGTGGTTCTGGGAT+TGG + chr5_3:55316092-55316111 None:intergenic 45.0%
GTTGGAGGAATAGTGGTTCT+GGG + chr5_3:55316097-55316116 None:intergenic 45.0%
AGTTGGAGGAATAGTGGTTC+TGG + chr5_3:55316098-55316117 None:intergenic 45.0%
!! GACTTGAGTTGGAGGAATAG+TGG + chr5_3:55316104-55316123 None:intergenic 45.0%
! TACGTTTTCTGTTCGAGCAC+AGG - chr5_3:55316150-55316169 Msa0819190:intron 45.0%
AACCACAGATTCACCAGATG+TGG + chr5_3:55316777-55316796 None:intergenic 45.0%
ATAAGGAGAAGACCACCAAC+TGG - chr5_3:55316869-55316888 Msa0819190:intron 45.0%
TAATGATTAGGGGGTCCAGT+TGG + chr5_3:55316887-55316906 None:intergenic 45.0%
GGACCCCCTAATCATTATGT+AGG - chr5_3:55316890-55316909 Msa0819190:intron 45.0%
TATTTCCCTCGTTCTGCAAC+CGG + chr5_3:55316928-55316947 None:intergenic 45.0%
GGAAGAGATTGTGTGGAACA+AGG - chr5_3:55316964-55316983 Msa0819190:intron 45.0%
GGCCTTCCTAACCATAAGAA+GGG + chr5_3:55317107-55317126 None:intergenic 45.0%
!! GAACAGGAGGTGCATTTTCA+AGG + chr5_3:55317129-55317148 None:intergenic 45.0%
TGAAAATGCACCTCCTGTTC+GGG - chr5_3:55317129-55317148 Msa0819190:intron 45.0%
CCAATAAAATCCCGAACAGG+AGG + chr5_3:55317142-55317161 None:intergenic 45.0%
! CCTCCTGTTCGGGATTTTAT+TGG - chr5_3:55317139-55317158 Msa0819190:intron 45.0%
! GGGATTTTATTGGGGCTCTA+AGG - chr5_3:55317149-55317168 Msa0819190:intron 45.0%
AATGAACGAACTGGATTGCC+GGG - chr5_3:55317178-55317197 Msa0819190:intron 45.0%
AAGAAGGCTTCACCAAGTAG+AGG - chr5_3:55317217-55317236 Msa0819190:intron 45.0%
TCTCTCAAGATGCCTCTACT+TGG + chr5_3:55317232-55317251 None:intergenic 45.0%
GCTACAACACTGTAGCATAG+CGG - chr5_3:55317473-55317492 Msa0819190:intron 45.0%
CAAAACTGGTCATTTCCGCA+AGG - chr5_3:55318226-55318245 Msa0819190:intron 45.0%
! GCCAAGGGTTAAGTGCTTTT+GGG - chr5_3:55318487-55318506 Msa0819190:CDS 45.0%
!! ACCCAAAAGCACTTAACCCT+TGG + chr5_3:55318491-55318510 None:intergenic 45.0%
!! GTGCTTTTGGGTGAGATTCT+TGG - chr5_3:55318499-55318518 Msa0819190:CDS 45.0%
TTTGGGTGAGATTCTTGGGT+TGG - chr5_3:55318504-55318523 Msa0819190:CDS 45.0%
TTGGGTGAGATTCTTGGGTT+GGG - chr5_3:55318505-55318524 Msa0819190:CDS 45.0%
! CACTTTTCATTCACCTTGGG+TGG - chr5_3:55318531-55318550 Msa0819190:intron 45.0%
TAATGAGATCTCACCACCCA+AGG + chr5_3:55318547-55318566 None:intergenic 45.0%
GGTGGTGAGATCTCATTAGA+GGG - chr5_3:55318549-55318568 Msa0819190:intron 45.0%
CCAATATGACCTACGTCTAG+GGG + chr5_3:55318739-55318758 None:intergenic 45.0%
CCCAATATGACCTACGTCTA+GGG + chr5_3:55318740-55318759 None:intergenic 45.0%
CCCTAGACGTAGGTCATATT+GGG - chr5_3:55318737-55318756 Msa0819190:intron 45.0%
TAGGTCATATTGGGCCAAAC+TGG - chr5_3:55318746-55318765 Msa0819190:intron 45.0%
AGGTCATATTGGGCCAAACT+GGG - chr5_3:55318747-55318766 Msa0819190:intron 45.0%
CTCTACTATGCTCGATCCAA+AGG - chr5_3:55319373-55319392 Msa0819190:intron 45.0%
TAATGTAGGTGCACGATGAG+AGG - chr5_3:55319912-55319931 Msa0819190:intron 45.0%
AATGTAGGTGCACGATGAGA+GGG - chr5_3:55319913-55319932 Msa0819190:intron 45.0%
AGGGAATTCGATCGTGTTCT+TGG - chr5_3:55319932-55319951 Msa0819190:intron 45.0%
CGATCGTGTTCTTGGAATAG+AGG - chr5_3:55319940-55319959 Msa0819190:intron 45.0%
ACCACGAAGAAGCTTCTTGA+AGG - chr5_3:55320116-55320135 Msa0819190:intron 45.0%
TCCTTCAAGAAGCTTCTTCG+TGG + chr5_3:55320120-55320139 None:intergenic 45.0%
GTTTAGATGGTTGGGGAATC+TGG - chr5_3:55320255-55320274 Msa0819190:intron 45.0%
TTGAAATGTAGCAGGGTCAG+AGG - chr5_3:55321179-55321198 Msa0819190:intron 45.0%
CATCCCCATAAGTCATGTGA+AGG + chr5_3:55321562-55321581 None:intergenic 45.0%
GAAGGTGGAGGGATCAAAAA+TGG + chr5_3:55322225-55322244 None:intergenic 45.0%
GAAGGTCGAGGAGAAACAAA+AGG + chr5_3:55322258-55322277 None:intergenic 45.0%
AATAAAGGACCTAGAGGAGG+AGG + chr5_3:55322294-55322313 None:intergenic 45.0%
GGAAACAAAGGAGGTTCAGA+AGG + chr5_3:55322324-55322343 None:intergenic 45.0%
CAAGGAGAAACAAAAGGACC+TGG + chr5_3:55322366-55322385 None:intergenic 45.0%
AGTGAAAATAAAGGACCCGG+AGG + chr5_3:55322408-55322427 None:intergenic 45.0%
TCAGAAGGAGGAAACAAAGG+AGG + chr5_3:55322441-55322460 None:intergenic 45.0%
GGATCAGAAGGAGGAAACAA+AGG + chr5_3:55322444-55322463 None:intergenic 45.0%
AGAGGAAATGGAGGATCAGA+AGG + chr5_3:55322456-55322475 None:intergenic 45.0%
CCTAGAAGAAGAGGAAATGG+AGG + chr5_3:55322465-55322484 None:intergenic 45.0%
CCTCCATTTCCTCTTCTTCT+AGG - chr5_3:55322462-55322481 Msa0819190:five_prime_UTR 45.0%
! GTAGATATGGGAGGTTGGTT+AGG + chr5_3:55322498-55322517 None:intergenic 45.0%
AATATTGGGGAAGGAGTGGA+GGG + chr5_3:55322548-55322567 None:intergenic 45.0%
AAATATTGGGGAAGGAGTGG+AGG + chr5_3:55322549-55322568 None:intergenic 45.0%
!! ATAAATCTAAATTAAAATTA+CGG + chr5_3:55320471-55320490 None:intergenic 5.0%
CTGGGATTGGAAGAGAACGA+AGG + chr5_3:55316079-55316098 None:intergenic 50.0%
GATTAGGCGGAGCCTAATGA+AGG - chr5_3:55316737-55316756 Msa0819190:intron 50.0%
TCGGCTACAATAGCCACATC+TGG - chr5_3:55316761-55316780 Msa0819190:intron 50.0%
AGCCACATCTGGTGAATCTG+TGG - chr5_3:55316772-55316791 Msa0819190:intron 50.0%
AATGAGGTTGCTGCTACCCA+AGG - chr5_3:55316839-55316858 Msa0819190:intron 50.0%
TCAATTCCGGTTGCAGAACG+AGG - chr5_3:55316919-55316938 Msa0819190:intron 50.0%
CAATTCCGGTTGCAGAACGA+GGG - chr5_3:55316920-55316939 Msa0819190:intron 50.0%
GGGCCTTCCTAACCATAAGA+AGG + chr5_3:55317108-55317127 None:intergenic 50.0%
GCCCCAATAAAATCCCGAAC+AGG + chr5_3:55317145-55317164 None:intergenic 50.0%
AGGGCAGCTAATGAACGAAC+TGG - chr5_3:55317169-55317188 Msa0819190:intron 50.0%
GCTCTAGCACTATAGGGTAG+TGG - chr5_3:55317382-55317401 Msa0819190:intron 50.0%
! TTTTCCCTGCCAAAACCGCA+AGG - chr5_3:55318299-55318318 Msa0819190:CDS 50.0%
! GGCCAAGGGTTAAGTGCTTT+TGG - chr5_3:55318486-55318505 Msa0819190:CDS 50.0%
GGGTGGTGAGATCTCATTAG+AGG - chr5_3:55318548-55318567 Msa0819190:intron 50.0%
GGTGAGATCTCATTAGAGGG+AGG - chr5_3:55318552-55318571 Msa0819190:intron 50.0%
CCCCTAGACGTAGGTCATAT+TGG - chr5_3:55318736-55318755 Msa0819190:intron 50.0%
GCCCAATATGACCTACGTCT+AGG + chr5_3:55318741-55318760 None:intergenic 50.0%
AAGGACTGCATCTGCACCTT+TGG + chr5_3:55319392-55319411 None:intergenic 50.0%
TCCTGAATGTGAATGACGGC+CGG - chr5_3:55319523-55319542 Msa0819190:intron 50.0%
TGTGATACCTACACCGTAGC+TGG - chr5_3:55319774-55319793 Msa0819190:intron 50.0%
!! ATAGAGGGCGTTGAGCTCAT+TGG - chr5_3:55319956-55319975 Msa0819190:intron 50.0%
AGGACCTGAGTCATCAACTG+TGG - chr5_3:55320046-55320065 Msa0819190:intron 50.0%
!! GAAGCCACAGTTGATGACTC+AGG + chr5_3:55320053-55320072 None:intergenic 50.0%
AAGCTTCTTGAAGGAGAGCG+AGG - chr5_3:55320125-55320144 Msa0819190:intron 50.0%
AGCTTCGGCTTCCTAGAATG+TGG - chr5_3:55321390-55321409 Msa0819190:intron 50.0%
TCGGCTTCCTAGAATGTGGT+TGG - chr5_3:55321394-55321413 Msa0819190:intron 50.0%
TGGGAAGCCAACCACATTCT+AGG + chr5_3:55321404-55321423 None:intergenic 50.0%
!!! TGTGGTTGGCTTCCCAGTTT+TGG - chr5_3:55321408-55321427 Msa0819190:intron 50.0%
ACAAAAGGACCTGGAGGAGA+AGG + chr5_3:55322243-55322262 None:intergenic 50.0%
GGAGAAACAAAAGGACCTGG+AGG + chr5_3:55322249-55322268 None:intergenic 50.0%
CGAGGAGAAACAAAAGGACC+TGG + chr5_3:55322252-55322271 None:intergenic 50.0%
ACAAAAGGACCTGGAGGAGA+AGG + chr5_3:55322243-55322262 None:intergenic 50.0%
GGAGAAACAAAAGGACCTGG+AGG + chr5_3:55322249-55322268 None:intergenic 50.0%
GAAAATAAAGGACCCGGAGG+AGG + chr5_3:55322405-55322424 None:intergenic 50.0%
GGAAACAAAGGAGGTTCAGG+AGG + chr5_3:55322432-55322451 None:intergenic 50.0%
GGAGGAAACAAAGGAGGTTC+AGG + chr5_3:55322327-55322346 None:intergenic 50.0%
GGAAATGGAGGATCAGAAGG+AGG + chr5_3:55322453-55322472 None:intergenic 50.0%
AGAGGGACACCTAGAAGAAG+AGG + chr5_3:55322474-55322493 None:intergenic 50.0%
! TGGGAGGTTGGTTAGGAAGA+GGG + chr5_3:55322491-55322510 None:intergenic 50.0%
! ATGGGAGGTTGGTTAGGAAG+AGG + chr5_3:55322492-55322511 None:intergenic 50.0%
ATATTGGGGAAGGAGTGGAG+GGG + chr5_3:55322547-55322566 None:intergenic 50.0%
GGCGGAGCCTAATGAAGGTT+CGG - chr5_3:55316742-55316761 Msa0819190:intron 55.0%
TGATTAGGGGGTCCAGTTGG+TGG + chr5_3:55316884-55316903 None:intergenic 55.0%
CAAGGACAAAGAAGTCGCGC+AGG - chr5_3:55316982-55317001 Msa0819190:intron 55.0%
!! TTTCCGCAAGGCGTTGACAG+AGG - chr5_3:55318238-55318257 Msa0819190:intron 55.0%
GAACCTCTGTCAACGCCTTG+CGG + chr5_3:55318244-55318263 None:intergenic 55.0%
! AAGGCACCCAGTGGACCATT+GGG - chr5_3:55318339-55318358 Msa0819190:CDS 55.0%
!! TGGACTGGCAGCTCTTGTTG+AGG - chr5_3:55319474-55319493 Msa0819190:intron 55.0%
AAAGGACCTGGAGGAGAAGG+TGG + chr5_3:55322240-55322259 None:intergenic 55.0%
AAAGGACCTAGAGGAGGAGG+AGG + chr5_3:55322291-55322310 None:intergenic 55.0%
GGAGGAGGAGGAAACAAAGG+AGG + chr5_3:55322333-55322352 None:intergenic 55.0%
AAAGGACCTGGAGGAGAAGG+CGG + chr5_3:55322240-55322259 None:intergenic 55.0%
TCTCCTTGACCTTCTCCTCC+AGG - chr5_3:55322378-55322397 Msa0819190:CDS 55.0%
TATTGGGGAAGGAGTGGAGG+GGG + chr5_3:55322546-55322565 None:intergenic 55.0%
TCCCTGCCAAAACCGCAAGG+CGG - chr5_3:55318302-55318321 Msa0819190:CDS 60.0%
!! ACCGCCTTGCGGTTTTGGCA+GGG + chr5_3:55318306-55318325 None:intergenic 60.0%
! GTGAGACCGCCTTGCGGTTT+TGG + chr5_3:55318311-55318330 None:intergenic 60.0%
AAACCGCAAGGCGGTCTCAC+TGG - chr5_3:55318311-55318330 Msa0819190:CDS 60.0%
AACCGCAAGGCGGTCTCACT+GGG - chr5_3:55318312-55318331 Msa0819190:CDS 60.0%
! CAAGGCACCCAGTGGACCAT+TGG - chr5_3:55318338-55318357 Msa0819190:CDS 60.0%
ACCCAGTGGACCATTGGGCA+GGG - chr5_3:55318344-55318363 Msa0819190:CDS 60.0%
CTCCTCTCTCCCCTAGACGT+AGG - chr5_3:55318727-55318746 Msa0819190:intron 60.0%
GACCTACGTCTAGGGGAGAG+AGG + chr5_3:55318732-55318751 None:intergenic 60.0%
GCCGGCCGTCATTCACATTC+AGG + chr5_3:55319527-55319546 None:intergenic 60.0%
GAATGTGAATGACGGCCGGC+TGG - chr5_3:55319527-55319546 Msa0819190:intron 60.0%
ATCCCTCCACCTTCTCCTCC+AGG - chr5_3:55322231-55322250 Msa0819190:intron 60.0%
GACCTGGAGGAGAAGGTGGA+GGG + chr5_3:55322236-55322255 None:intergenic 60.0%
TCTCCTCGACCTTCTCCTCC+AGG - chr5_3:55322264-55322283 Msa0819190:intron 60.0%
GGCGGAGGAGGAGGAAACAA+AGG + chr5_3:55322336-55322355 None:intergenic 60.0%
GGACCTGGAGGAGAAGGTCA+AGG + chr5_3:55322384-55322403 None:intergenic 60.0%
TTCTCCTCCAGGTCCTCCTC+CGG - chr5_3:55322275-55322294 Msa0819190:intron 60.0%
AGTGGAGGGGGTGGATACTG+GGG + chr5_3:55322534-55322553 None:intergenic 60.0%
GAGTGGAGGGGGTGGATACT+GGG + chr5_3:55322535-55322554 None:intergenic 60.0%
!! GACCGCCTTGCGGTTTTGGC+AGG + chr5_3:55318307-55318326 None:intergenic 65.0%
ACCGCAAGGCGGTCTCACTG+GGG - chr5_3:55318313-55318332 Msa0819190:CDS 65.0%
ACCCCAGTGAGACCGCCTTG+CGG + chr5_3:55318317-55318336 None:intergenic 65.0%
CACCCAGTGGACCATTGGGC+AGG - chr5_3:55318343-55318362 Msa0819190:CDS 65.0%
CCCCTGCCCAATGGTCCACT+GGG + chr5_3:55318348-55318367 None:intergenic 65.0%
CCCAGTGGACCATTGGGCAG+GGG - chr5_3:55318345-55318364 Msa0819190:CDS 65.0%
ACCCCTGCCCAATGGTCCAC+TGG + chr5_3:55318349-55318368 None:intergenic 65.0%
! GACCATTGGGCAGGGGTGCA+AGG - chr5_3:55318352-55318371 Msa0819190:CDS 65.0%
CACCTTGCACCCCTGCCCAA+TGG + chr5_3:55318357-55318376 None:intergenic 65.0%
GGGTGCAAGGTGCAGGGACT+AGG - chr5_3:55318365-55318384 Msa0819190:intron 65.0%
GGACCTGGAGGAGAAGGTGG+AGG + chr5_3:55322237-55322256 None:intergenic 65.0%
GGACCTGGAGGAGAAGGTCG+AGG + chr5_3:55322270-55322289 None:intergenic 65.0%
GGAGGAGGACCTGGAGGAGA+AGG + chr5_3:55322276-55322295 None:intergenic 65.0%
AGAGGAGGAGGAGGACCTGG+AGG + chr5_3:55322282-55322301 None:intergenic 65.0%
CCTAGAGGAGGAGGAGGACC+TGG + chr5_3:55322285-55322304 None:intergenic 65.0%
CCAGGTCCTCCTCCTCCTCT+AGG - chr5_3:55322282-55322301 Msa0819190:intron 65.0%
GGAGGAGGACCTGGAGGAGA+AGG + chr5_3:55322276-55322295 None:intergenic 65.0%
TCTCCTCCAGGTCCTCCTCC+GGG - chr5_3:55322276-55322295 Msa0819190:intron 65.0%
AAAGGACCCGGAGGAGGACC+TGG + chr5_3:55322399-55322418 None:intergenic 65.0%
GGAGTGGAGGGGGTGGATAC+TGG + chr5_3:55322536-55322555 None:intergenic 65.0%
GGCGGTCTCACTGGGGTGCA+AGG - chr5_3:55318320-55318339 Msa0819190:CDS 70.0%
! CTGGGGTGCAAGGCACCCAG+TGG - chr5_3:55318330-55318349 Msa0819190:CDS 70.0%
! TGGGCAGGGGTGCAAGGTGC+AGG - chr5_3:55318358-55318377 Msa0819190:intron 70.0%
! GGGCAGGGGTGCAAGGTGCA+GGG - chr5_3:55318359-55318378 Msa0819190:intron 70.0%
GGAGGAGAAGGCGGAGGAGG+AGG + chr5_3:55322345-55322364 None:intergenic 70.0%
CCTGGAGGAGAAGGCGGAGG+AGG + chr5_3:55322348-55322367 None:intergenic 70.0%
CCTCCTCCGCCTTCTCCTCC+AGG - chr5_3:55322345-55322364 Msa0819190:CDS 70.0%
GGACCTGGAGGAGAAGGCGG+AGG + chr5_3:55322351-55322370 None:intergenic 70.0%
TGGGGAAGGAGTGGAGGGGG+TGG + chr5_3:55322543-55322562 None:intergenic 70.0%
GGACCCGGAGGAGGACCTGG+AGG + chr5_3:55322396-55322415 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 55315801 55322664 55315801 ID=Msa0819190;Name=Msa0819190
chr5_3 mRNA 55315801 55322664 55315801 ID=Msa0819190-mRNA-1;Parent=Msa0819190;Name=Msa0819190-mRNA-1;_AED=0.17;_eAED=0.17;_QI=233|0.62|0.77|0.88|0.75|0.77|9|0|324
chr5_3 exon 55315801 55315806 55315801 ID=Msa0819190-mRNA-1:exon:16827;Parent=Msa0819190-mRNA-1
chr5_3 exon 55318136 55318204 55318136 ID=Msa0819190-mRNA-1:exon:16826;Parent=Msa0819190-mRNA-1
chr5_3 exon 55318290 55318372 55318290 ID=Msa0819190-mRNA-1:exon:16825;Parent=Msa0819190-mRNA-1
chr5_3 exon 55318467 55318545 55318467 ID=Msa0819190-mRNA-1:exon:16824;Parent=Msa0819190-mRNA-1
chr5_3 exon 55318970 55319134 55318970 ID=Msa0819190-mRNA-1:exon:16823;Parent=Msa0819190-mRNA-1
chr5_3 exon 55319233 55319277 55319233 ID=Msa0819190-mRNA-1:exon:16822;Parent=Msa0819190-mRNA-1
chr5_3 exon 55321201 55321376 55321201 ID=Msa0819190-mRNA-1:exon:16821;Parent=Msa0819190-mRNA-1
chr5_3 exon 55321512 55321722 55321512 ID=Msa0819190-mRNA-1:exon:16820;Parent=Msa0819190-mRNA-1
chr5_3 exon 55322294 55322664 55322294 ID=Msa0819190-mRNA-1:exon:16819;Parent=Msa0819190-mRNA-1
chr5_3 five_prime_UTR 55322432 55322664 55322432 ID=Msa0819190-mRNA-1:five_prime_utr;Parent=Msa0819190-mRNA-1
chr5_3 CDS 55322294 55322431 55322294 ID=Msa0819190-mRNA-1:cds;Parent=Msa0819190-mRNA-1
chr5_3 CDS 55321512 55321722 55321512 ID=Msa0819190-mRNA-1:cds;Parent=Msa0819190-mRNA-1
chr5_3 CDS 55321201 55321376 55321201 ID=Msa0819190-mRNA-1:cds;Parent=Msa0819190-mRNA-1
chr5_3 CDS 55319233 55319277 55319233 ID=Msa0819190-mRNA-1:cds;Parent=Msa0819190-mRNA-1
chr5_3 CDS 55318970 55319134 55318970 ID=Msa0819190-mRNA-1:cds;Parent=Msa0819190-mRNA-1
chr5_3 CDS 55318467 55318545 55318467 ID=Msa0819190-mRNA-1:cds;Parent=Msa0819190-mRNA-1
chr5_3 CDS 55318290 55318372 55318290 ID=Msa0819190-mRNA-1:cds;Parent=Msa0819190-mRNA-1
chr5_3 CDS 55318136 55318204 55318136 ID=Msa0819190-mRNA-1:cds;Parent=Msa0819190-mRNA-1
chr5_3 CDS 55315801 55315806 55315801 ID=Msa0819190-mRNA-1:cds;Parent=Msa0819190-mRNA-1
Gene Sequence

>Msa0819190

ATGGAATCCTTGATTTCTCTCAAGGGTAACTTTCATGTCTTCCCTTCGTTCTCTTCCAATCCCAGAACCACTATTCCTCCAACTCAAGTCAATACTTATAGAAAAAACTCAAGTTTTACGTTTTCTGTTCGAGCACAGGCGGAGCCTAATGAAGGTTCGGCTACAATAGCCACATCTGGTGAATCTGTGGTTGAAGCTCTCAAAGTTAAGGAATGGGAAGTAGGAATGTTTCATAATGAGGTTGCTGCTACCCAAGGTATAAGAATAAGGAGAAGACCACCAACTGGACCCCCTAATCATTATGTAGGACCTTTTCAATTCCGGTTGCAGAACGAGGGAAATACACCGCCTCAAAGAAAGAAAACCCTTCTTATGGTTAGGAAGGCCCTTGAAAATGCACCTCCTGTTCGGGATTTTATTGGGGCTCTAAGGGCAGCTAATGAACGAACTGGATTGCCGGGATTGATTGCTGAAGTCAAGAAGGCTTCACCAAGTAGAGGCATCTTGAGAGAGAATTTTGATCCAGGAAGCTTTGAAAATTTGGAGTTAATAAGAAATGCTGGAGTAAAGTGCCCTTTGTTGTGCAAAGAATTCATTATAGATGCTTGGCAACTCTACTATGCTCGATCCAAAGGTGCAGATGCAGTCCTTCTAATTGCCGCTGTTTTACCTGATCTTGACATCAAATACATGGTTAAGATATGCAAATTACTTGGACTGGCAGCTCTTGTTGAGGTGCACGATGAGAGGGAATTCGATCGTGTTCTTGGAATAGAGGGCGTTGAGCTCATTGGAATCAACAATCGTAATCTTGAAACATTTGAGTTAGATATCAGCACCACGAAGAAGCTTCTTGAAGGAGAGCGAGGCAAAATAATTCGTGAGAGAAACATAATTATGGTTGGGGAATCTGGTCTTTTCACACCTGCAGACATTGCTTATGTACAAGAAGCAGGAGTTAAAGCTAATAAA

Protein sequence

>Msa0819190

MESLISLKGNFHVFPSFSSNPRTTIPPTQVNTYRKNSSFTFSVRAQAEPNEGSATIATSGESVVEALKVKEWEVGMFHNEVAATQGIRIRRRPPTGPPNHYVGPFQFRLQNEGNTPPQRKKTLLMVRKALENAPPVRDFIGALRAANERTGLPGLIAEVKKASPSRGILRENFDPGSFENLELIRNAGVKCPLLCKEFIIDAWQLYYARSKGADAVLLIAAVLPDLDIKYMVKICKLLGLAALVEVHDEREFDRVLGIEGVELIGINNRNLETFELDISTTKKLLEGERGKIIRERNIIMVGESGLFTPADIAYVQEAGVKANK