Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0819760 | TKY56988.1 | 31.618 | 408 | 221 | 18 | 29 | 429 | 23 | 379 | 3.72e-34 | 146 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0819760 | A0A392MSZ3 | 60.331 | 121 | 40 | 4 | 1 | 116 | 1 | 118 | 1.32e-24 | 109 |
| Msa0819760 | A0A392MSZ3 | 61.789 | 123 | 37 | 5 | 529 | 646 | 1 | 118 | 5.82e-25 | 110 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0782340 | Msa0819760 | 0.824894 | 6.303680e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0819760 | MtrunA17_Chr8g0352661 | 26.062 | 353 | 211 | 14 | 64 | 408 | 75 | 385 | 1.23e-15 | 79.7 |
| Msa0819760 | MtrunA17_Chr2g0307991 | 25.212 | 353 | 210 | 13 | 64 | 406 | 48 | 356 | 1.46e-15 | 79.3 |
| Msa0819760 | MtrunA17_Chr2g0308001 | 25.496 | 353 | 215 | 13 | 63 | 406 | 46 | 359 | 2.76e-15 | 78.6 |
| Msa0819760 | MtrunA17_Chr6g0486981 | 26.000 | 350 | 209 | 16 | 67 | 406 | 80 | 389 | 5.81e-15 | 77.8 |
| Msa0819760 | MtrunA17_Chr2g0333991 | 25.617 | 324 | 199 | 13 | 91 | 406 | 99 | 388 | 1.71e-14 | 76.3 |
| Msa0819760 | MtrunA17_Chr2g0311451 | 24.768 | 323 | 203 | 13 | 91 | 406 | 99 | 388 | 4.92e-13 | 71.6 |
| Msa0819760 | MtrunA17_Chr2g0310831 | 26.816 | 358 | 190 | 16 | 66 | 404 | 85 | 389 | 7.08e-13 | 71.2 |
| Msa0819760 | MtrunA17_Chr8g0352671 | 27.066 | 351 | 193 | 17 | 66 | 400 | 80 | 383 | 8.32e-13 | 70.9 |
| Msa0819760 | MtrunA17_Chr5g0419291 | 24.217 | 351 | 212 | 16 | 59 | 400 | 70 | 375 | 5.87e-11 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0819760 | AT2G03200.1 | 24.931 | 361 | 184 | 16 | 76 | 406 | 107 | 410 | 9.89e-13 | 71.2 |
Find 102 sgRNAs with CRISPR-Local
Find 282 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTATGCTTGCTGCTTGATTC+AGG | 0.172720 | 5_3:+56508185 | None:intergenic |
| GCTAAATCAGAAGGAATTTA+TGG | 0.217782 | 5_3:-56509754 | Msa0819760:CDS |
| AATCACAACAACATCTCTTT+TGG | 0.240744 | 5_3:-56507355 | Msa0819760:CDS |
| AATCACAACAACATCTCTTT+TGG | 0.240744 | 5_3:-56511877 | Msa0819760:CDS |
| CCAAATCTGTTGAGATTTGC+AGG | 0.264980 | 5_3:+56508109 | None:intergenic |
| TCTTTATCTTTATCTTTAAC+TGG | 0.270608 | 5_3:+56509811 | None:intergenic |
| GCTATGAGCAAGTTCACTTT+TGG | 0.280909 | 5_3:-56509487 | Msa0819760:CDS |
| GCTTTATACTAAGCTCAAAT+TGG | 0.282385 | 5_3:+56507129 | None:intergenic |
| AGCGATCTCATATGGCTTTA+TGG | 0.283710 | 5_3:-56507181 | Msa0819760:CDS |
| AGCGATCTCATATGGCTTTA+TGG | 0.283710 | 5_3:-56511703 | Msa0819760:CDS |
| TTATCTTTAACTGGACATTC+TGG | 0.308228 | 5_3:+56509820 | None:intergenic |
| AAGGTAATGATTATTGATTC+AGG | 0.310716 | 5_3:-56509307 | Msa0819760:CDS |
| GAATGGTCTTGATCTGTTAA+AGG | 0.324061 | 5_3:+56509430 | None:intergenic |
| TGGAATGGCATATGTATCTT+TGG | 0.327787 | 5_3:+56507213 | None:intergenic |
| TGGAATGGCATATGTATCTT+TGG | 0.327787 | 5_3:+56511735 | None:intergenic |
| CCTGCAAATCTCAACAGATT+TGG | 0.331732 | 5_3:-56508109 | Msa0819760:CDS |
| AAAATGAAGGGTATCATAAA+AGG | 0.339578 | 5_3:-56509018 | Msa0819760:CDS |
| TTTATGGTCCAGCTAATCTT+TGG | 0.343745 | 5_3:-56509738 | Msa0819760:CDS |
| GGAGTTGTTGGACTTGGATC+TGG | 0.346598 | 5_3:-56509604 | Msa0819760:CDS |
| ATGAGATCGCTTCCGGTGTC+TGG | 0.356075 | 5_3:+56507193 | None:intergenic |
| ATGAGATCGCTTCCGGTGTC+TGG | 0.356075 | 5_3:+56511715 | None:intergenic |
| GCTCGATGTTTAAACCGTTT+AGG | 0.380430 | 5_3:+56507389 | None:intergenic |
| GCTCGATGTTTAAACCGTTT+AGG | 0.380430 | 5_3:+56511911 | None:intergenic |
| AGCAATTATTTCAGATTCAA+TGG | 0.381469 | 5_3:+56507294 | None:intergenic |
| AGCAATTATTTCAGATTCAA+TGG | 0.381469 | 5_3:+56511816 | None:intergenic |
| AAGAAGGAACATTGAACATT+GGG | 0.393773 | 5_3:-56509681 | Msa0819760:CDS |
| AAATAATTGCTCAACAGTTC+AGG | 0.397781 | 5_3:-56507282 | Msa0819760:CDS |
| AAATAATTGCTCAACAGTTC+AGG | 0.397781 | 5_3:-56511804 | Msa0819760:CDS |
| ATAAAAGGCTGCGTAGCTAT+TGG | 0.410038 | 5_3:-56509003 | Msa0819760:CDS |
| TATGCTTGCTGCTTGATTCA+GGG | 0.411051 | 5_3:+56508186 | None:intergenic |
| AGCCAAGGAGTTGTTGGACT+TGG | 0.412091 | 5_3:-56509610 | Msa0819760:CDS |
| TGACGAGTGTCATCACTTAT+CGG | 0.419794 | 5_3:+56509337 | None:intergenic |
| AAGCCATATGAGATCGCTTC+CGG | 0.423924 | 5_3:+56507186 | None:intergenic |
| AAGCCATATGAGATCGCTTC+CGG | 0.423924 | 5_3:+56511708 | None:intergenic |
| TTTGTAAACCAAAGATTAGC+TGG | 0.424694 | 5_3:+56509730 | None:intergenic |
| TTCAGGGAGCTGTCGGCACT+TGG | 0.425987 | 5_3:+56508202 | None:intergenic |
| TCCAAGATGTGATGATTTGA+AGG | 0.431291 | 5_3:-56509857 | Msa0819760:CDS |
| TCCTTCAAATCATCACATCT+TGG | 0.433083 | 5_3:+56509856 | None:intergenic |
| AAAAGAATTAGATGGGAAAG+AGG | 0.438382 | 5_3:-56509227 | Msa0819760:CDS |
| TTCAGGTATCTCATGAAATT+CGG | 0.440637 | 5_3:-56507265 | Msa0819760:CDS |
| TTCAGGTATCTCATGAAATT+CGG | 0.440637 | 5_3:-56511787 | Msa0819760:CDS |
| GGAATGGCATATGTATCTTT+GGG | 0.443169 | 5_3:+56507214 | None:intergenic |
| GGAATGGCATATGTATCTTT+GGG | 0.443169 | 5_3:+56511736 | None:intergenic |
| TGTGATGATTTGAAGGATAT+CGG | 0.443834 | 5_3:-56509850 | Msa0819760:CDS |
| TGGTTAAAGAAGATGCATCT+AGG | 0.449166 | 5_3:+56507314 | None:intergenic |
| TGGTTAAAGAAGATGCATCT+AGG | 0.449166 | 5_3:+56511836 | None:intergenic |
| ACACCGGAAGCGATCTCATA+TGG | 0.453558 | 5_3:-56507189 | Msa0819760:CDS |
| ACACCGGAAGCGATCTCATA+TGG | 0.453558 | 5_3:-56511711 | Msa0819760:CDS |
| TTGAAACCTGTTGTGTTTGG+TGG | 0.460002 | 5_3:+56508059 | None:intergenic |
| GAATCAAGCAGCAAGCATAA+AGG | 0.467644 | 5_3:-56508182 | Msa0819760:CDS |
| TGTTTGAAACCTGTTGTGTT+TGG | 0.468196 | 5_3:+56508056 | None:intergenic |
| ACTAGCATCGGCAAGTGGTT+GGG | 0.472163 | 5_3:+56507420 | None:intergenic |
| ACTAGCATCGGCAAGTGGTT+GGG | 0.472163 | 5_3:+56511942 | None:intergenic |
| TACTAGCATCGGCAAGTGGT+TGG | 0.475730 | 5_3:+56507419 | None:intergenic |
| TACTAGCATCGGCAAGTGGT+TGG | 0.475730 | 5_3:+56511941 | None:intergenic |
| TGACACTCGTCAAGCTCATA+AGG | 0.481324 | 5_3:-56509326 | Msa0819760:CDS |
| GCTAGTACTCAAAACCTAAA+CGG | 0.482408 | 5_3:-56507403 | Msa0819760:CDS |
| GCTAGTACTCAAAACCTAAA+CGG | 0.482408 | 5_3:-56511925 | Msa0819760:CDS |
| GTCAAGCCACCAAACACAAC+AGG | 0.488913 | 5_3:-56508065 | Msa0819760:intron |
| ATCCAAGTCCAACAACTCCT+TGG | 0.492625 | 5_3:+56509608 | None:intergenic |
| AAAGAATTAGATGGGAAAGA+GGG | 0.492739 | 5_3:-56509226 | Msa0819760:CDS |
| CACAAGTGTTACGAGAAAGA+TGG | 0.496565 | 5_3:-56509184 | Msa0819760:CDS |
| AAAGAAGGAACATTGAACAT+TGG | 0.499741 | 5_3:-56509682 | Msa0819760:CDS |
| TAGAGTTCAATTTCAGCGAA+TGG | 0.501557 | 5_3:-56508250 | Msa0819760:CDS |
| AGCTCAAATTGGATTTACCT+TGG | 0.506668 | 5_3:+56507140 | None:intergenic |
| TAAGTACTACAATGCATGCA+TGG | 0.509293 | 5_3:+56512068 | None:intergenic |
| TATACTTATACAGATAAAGA+AGG | 0.512321 | 5_3:-56509079 | Msa0819760:CDS |
| CATCTTAAAAGTATTTATGT+AGG | 0.512889 | 5_3:-56509382 | Msa0819760:CDS |
| GGGAAAGAGGGAGAAAAGAA+AGG | 0.514345 | 5_3:-56509214 | Msa0819760:CDS |
| ACTTGGATTTGTTACCGTGT+TGG | 0.515960 | 5_3:+56508219 | None:intergenic |
| TGTTCCTTCTTTATCGCATG+TGG | 0.517983 | 5_3:+56509693 | None:intergenic |
| CCGCAATCGAAACTCTCCTT+AGG | 0.520181 | 5_3:+56509883 | None:intergenic |
| GAGTTGTTGGACTTGGATCT+GGG | 0.528801 | 5_3:-56509603 | Msa0819760:CDS |
| ATCGCTTCCGGTGTCTGGAA+TGG | 0.534464 | 5_3:+56507198 | None:intergenic |
| ATCGCTTCCGGTGTCTGGAA+TGG | 0.534464 | 5_3:+56511720 | None:intergenic |
| GGTTAAAGAAGATGCATCTA+GGG | 0.537784 | 5_3:+56507315 | None:intergenic |
| GGTTAAAGAAGATGCATCTA+GGG | 0.537784 | 5_3:+56511837 | None:intergenic |
| ACAAGTGTTACGAGAAAGAT+GGG | 0.545256 | 5_3:-56509183 | Msa0819760:CDS |
| TGCTTGATTCAGGGAGCTGT+CGG | 0.546053 | 5_3:+56508195 | None:intergenic |
| TGGATTTGTTACCGTGTTGG+CGG | 0.547513 | 5_3:+56508222 | None:intergenic |
| AAAGACCTTGCTAAATCAGA+AGG | 0.552586 | 5_3:-56509763 | Msa0819760:CDS |
| TATATATGCTTAACAGTGCA+AGG | 0.561224 | 5_3:-56509043 | Msa0819760:CDS |
| AAATTCCTTCTGATTTAGCA+AGG | 0.571254 | 5_3:+56509758 | None:intergenic |
| GAAACCACATGCGATAAAGA+AGG | 0.587474 | 5_3:-56509697 | Msa0819760:CDS |
| TCGTTTCTGCGACAAAATTG+TGG | 0.590151 | 5_3:+56509523 | None:intergenic |
| AAGTACTACAATGCATGCAT+GGG | 0.594341 | 5_3:+56512069 | None:intergenic |
| ACAGTGCAAGGAGAAAATGA+AGG | 0.599457 | 5_3:-56509031 | Msa0819760:CDS |
| AGCATGTATCAAGAAGCCTA+AGG | 0.607940 | 5_3:-56509899 | Msa0819760:CDS |
| CAGTGCAAGGAGAAAATGAA+GGG | 0.614413 | 5_3:-56509030 | Msa0819760:CDS |
| TGAGTACTAGCATCGGCAAG+TGG | 0.618274 | 5_3:+56507415 | None:intergenic |
| TGAGTACTAGCATCGGCAAG+TGG | 0.618274 | 5_3:+56511937 | None:intergenic |
| ATACTTATACAGATAAAGAA+GGG | 0.623826 | 5_3:-56509078 | Msa0819760:CDS |
| CCTAAGGAGAGTTTCGATTG+CGG | 0.639178 | 5_3:-56509883 | Msa0819760:CDS |
| CATCTTGTATGCCTACACTA+CGG | 0.653414 | 5_3:+56508140 | None:intergenic |
| GCGTAGCTATTGGAAGTCAG+AGG | 0.654070 | 5_3:-56508993 | Msa0819760:CDS |
| ACATATGCCATTCCAGACAC+CGG | 0.654784 | 5_3:-56507205 | Msa0819760:CDS |
| ACATATGCCATTCCAGACAC+CGG | 0.654784 | 5_3:-56511727 | Msa0819760:CDS |
| AGCACAAAGTACCGTAGTGT+AGG | 0.659207 | 5_3:-56508151 | Msa0819760:CDS |
| TAGCTATTGGAAGTCAGAGG+AGG | 0.673118 | 5_3:-56508990 | Msa0819760:intron |
| AAGACTTGTGAATCTAACCA+AGG | 0.681574 | 5_3:-56507157 | Msa0819760:CDS |
| AAGACTTGTGAATCTAACCA+AGG | 0.681574 | 5_3:-56511679 | Msa0819760:intron |
| GAATGGATCGACCGCCAACA+CGG | 0.686480 | 5_3:-56508233 | Msa0819760:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATATTTTTTAAATAAATA+GGG | + | chr5_3:56508859-56508878 | None:intergenic | 0.0% |
| !!! | AATATATTTTTTAAATAAAT+AGG | + | chr5_3:56508860-56508879 | None:intergenic | 0.0% |
| !! | TGAAAAAAAATAAAGTAAAT+TGG | + | chr5_3:56507552-56507571 | None:intergenic | 10.0% |
| !! | TTTGGATAAAATAAAAAAAA+TGG | - | chr5_3:56508628-56508647 | Msa0819760:intron | 10.0% |
| !!! | TTCTAAAAAATCTTATAAAT+AGG | + | chr5_3:56508766-56508785 | None:intergenic | 10.0% |
| !!! | CAAAAATTGTTTTATAAAAA+GGG | + | chr5_3:56508799-56508818 | None:intergenic | 10.0% |
| !!! | ACAAAAATTGTTTTATAAAA+AGG | + | chr5_3:56508800-56508819 | None:intergenic | 10.0% |
| !!! | ATTTGTTTTTCTTATATTAA+AGG | - | chr5_3:56509224-56509243 | Msa0819760:CDS | 10.0% |
| !! | AATCCAACATTAATTAAATT+TGG | - | chr5_3:56507610-56507629 | Msa0819760:intron | 15.0% |
| !!! | GGTAATTTTTTATTTACTTT+TGG | - | chr5_3:56507746-56507765 | Msa0819760:intron | 15.0% |
| !!! | AATTAATTTCTATGTTTTGA+CGG | - | chr5_3:56508078-56508097 | Msa0819760:CDS | 15.0% |
| !! | TTATTTAAATTCACATGTAT+GGG | + | chr5_3:56508112-56508131 | None:intergenic | 15.0% |
| !! | TTTATTTAAATTCACATGTA+TGG | + | chr5_3:56508113-56508132 | None:intergenic | 15.0% |
| !! | GTAATATAAATTAGATTAGA+TGG | - | chr5_3:56508301-56508320 | Msa0819760:intron | 15.0% |
| !!! | TTCTCTAAAAAAAAAAATCA+AGG | + | chr5_3:56508353-56508372 | None:intergenic | 15.0% |
| !!! | AAAGACAATTTTATTAACAA+AGG | - | chr5_3:56508401-56508420 | Msa0819760:intron | 15.0% |
| !! | GATTGAAATATTCATTTATT+TGG | - | chr5_3:56508667-56508686 | Msa0819760:intron | 15.0% |
| !! | AAAAATCTTATAAATAGGAA+CGG | + | chr5_3:56508761-56508780 | None:intergenic | 15.0% |
| !! | TAAACAATAATTAATGTAGT+TGG | + | chr5_3:56508827-56508846 | None:intergenic | 15.0% |
| !!! | GATAATATGAGAATTTTTTT+TGG | + | chr5_3:56509655-56509674 | None:intergenic | 15.0% |
| !!! | TTTCATATTTTTTTGTAACT+TGG | + | chr5_3:56510908-56510927 | None:intergenic | 15.0% |
| !!! | ATGATAAATCAATTTTGTAT+TGG | + | chr5_3:56511317-56511336 | None:intergenic | 15.0% |
| !!! | TATATGTTGTCATTTTTAAA+TGG | - | chr5_3:56511400-56511419 | Msa0819760:intron | 15.0% |
| !! | AAAAATATTAAATGCTAATG+AGG | - | chr5_3:56511483-56511502 | Msa0819760:intron | 15.0% |
| !!! | TATTTTCAAAAATATCTACG+CGG | - | chr5_3:56508172-56508191 | Msa0819760:CDS | 20.0% |
| !! | TTCAAATTGAAATTTATTGC+AGG | - | chr5_3:56508279-56508298 | Msa0819760:intron | 20.0% |
| !! | AATTCCTCAATTAAAACATT+TGG | - | chr5_3:56508610-56508629 | Msa0819760:intron | 20.0% |
| !!! | TTATCCAAATGTTTTAATTG+AGG | + | chr5_3:56508617-56508636 | None:intergenic | 20.0% |
| !! | ATAGAAAAATATCTGTCATT+AGG | - | chr5_3:56508702-56508721 | Msa0819760:intron | 20.0% |
| !! | TAGAAAAATATCTGTCATTA+GGG | - | chr5_3:56508703-56508722 | Msa0819760:intron | 20.0% |
| !!! | ATTTTACCAAAATGATCATA+TGG | - | chr5_3:56509004-56509023 | Msa0819760:CDS | 20.0% |
| !!! | TGTTTTTCTTATATTAAAGG+TGG | - | chr5_3:56509227-56509246 | Msa0819760:CDS | 20.0% |
| !! | TCTTTATCTTTATCTTTAAC+TGG | + | chr5_3:56509392-56509411 | None:intergenic | 20.0% |
| !!! | CTACATAAATACTTTTAAGA+TGG | + | chr5_3:56509820-56509839 | None:intergenic | 20.0% |
| !!! | CATCTTAAAAGTATTTATGT+AGG | - | chr5_3:56509818-56509837 | Msa0819760:CDS | 20.0% |
| !! | AAAGTAGAAAAAGAATTAGA+TGG | - | chr5_3:56509965-56509984 | Msa0819760:intron | 20.0% |
| !! | AAGTAGAAAAAGAATTAGAT+GGG | - | chr5_3:56509966-56509985 | Msa0819760:intron | 20.0% |
| !!! | TGATATTTTCTTCAATTTCT+CGG | + | chr5_3:56510047-56510066 | None:intergenic | 20.0% |
| !! | TATACTTATACAGATAAAGA+AGG | - | chr5_3:56510121-56510140 | Msa0819760:intron | 20.0% |
| !! | ATACTTATACAGATAAAGAA+GGG | - | chr5_3:56510122-56510141 | Msa0819760:intron | 20.0% |
| !! | TTATAATAACAATGCTATGA+TGG | - | chr5_3:56510556-56510575 | Msa0819760:intron | 20.0% |
| !!! | TATTTTACTCCAAGTTAATT+TGG | - | chr5_3:56510619-56510638 | Msa0819760:intron | 20.0% |
| !!! | ATTTGGAGTTGATAATATTA+TGG | - | chr5_3:56510636-56510655 | Msa0819760:intron | 20.0% |
| !!! | TTTGGAGTTGATAATATTAT+GGG | - | chr5_3:56510637-56510656 | Msa0819760:intron | 20.0% |
| !!! | ATATCTTTGTATTCCATTTT+GGG | + | chr5_3:56510794-56510813 | None:intergenic | 20.0% |
| !!! | TATATCTTTGTATTCCATTT+TGG | + | chr5_3:56510795-56510814 | None:intergenic | 20.0% |
| !!! | AGTTTTGTAAAGATAGAATT+GGG | + | chr5_3:56510838-56510857 | None:intergenic | 20.0% |
| !!! | AAGTTTTGTAAAGATAGAAT+TGG | + | chr5_3:56510839-56510858 | None:intergenic | 20.0% |
| !! | TACAACAATAAATACACAAA+GGG | + | chr5_3:56511273-56511292 | None:intergenic | 20.0% |
| !! | TTACAACAATAAATACACAA+AGG | + | chr5_3:56511274-56511293 | None:intergenic | 20.0% |
| !!! | TGTGAAAAAGAATGGTTTTA+GGG | + | chr5_3:56507204-56507223 | None:intergenic | 25.0% |
| !!! | AGTTTTAGTGTGAAAAAGAA+TGG | + | chr5_3:56507212-56507231 | None:intergenic | 25.0% |
| ! | AGCAATTATTTCAGATTCAA+TGG | + | chr5_3:56507387-56507406 | None:intergenic | 25.0% |
| ! | AAAGTAAATTGGATTTACCT+TGG | + | chr5_3:56507541-56507560 | None:intergenic | 25.0% |
| ! | CGACCAAATTTAATTAATGT+TGG | + | chr5_3:56507616-56507635 | None:intergenic | 25.0% |
| ! | AATCAAACCAATAACTAAGA+AGG | - | chr5_3:56507716-56507735 | Msa0819760:intron | 25.0% |
| !! | GACAATTTTTGTGAAATGTA+TGG | - | chr5_3:56507820-56507839 | Msa0819760:intron | 25.0% |
| !! | TTTTAGATGAAACTATTCCA+CGG | + | chr5_3:56507862-56507881 | None:intergenic | 25.0% |
| ! | AAATTAGATTAGATGGTACA+AGG | - | chr5_3:56508308-56508327 | Msa0819760:intron | 25.0% |
| ! | AAAAATCAAGGTCATATAAC+TGG | + | chr5_3:56508341-56508360 | None:intergenic | 25.0% |
| ! | AACGTCAAAAAAAAAAGTCA+AGG | + | chr5_3:56508381-56508400 | None:intergenic | 25.0% |
| !! | CAATTTTATTAACAAAGGTC+TGG | - | chr5_3:56508406-56508425 | Msa0819760:intron | 25.0% |
| ! | CAAATTGATGTTATAAGTCA+AGG | + | chr5_3:56508491-56508510 | None:intergenic | 25.0% |
| ! | CTTGACTTATAACATCAATT+TGG | - | chr5_3:56508489-56508508 | Msa0819760:intron | 25.0% |
| !!! | TAAGGGTTTTTTTTTTTGAG+AGG | + | chr5_3:56508575-56508594 | None:intergenic | 25.0% |
| !! | TTAAATAAATAGGGGTATGT+TGG | + | chr5_3:56508850-56508869 | None:intergenic | 25.0% |
| !!! | GATCATTTTGGTAAAATCAT+GGG | + | chr5_3:56509001-56509020 | None:intergenic | 25.0% |
| !!! | TGATCATTTTGGTAAAATCA+TGG | + | chr5_3:56509002-56509021 | None:intergenic | 25.0% |
| ! | ACAAACTTTCTTAATTCATG+TGG | - | chr5_3:56509041-56509060 | Msa0819760:CDS | 25.0% |
| !! | AAGATACAATTTTCTCTCTA+TGG | - | chr5_3:56509163-56509182 | Msa0819760:CDS | 25.0% |
| !! | AACGAATTTTACACAAAGAA+TGG | + | chr5_3:56509790-56509809 | None:intergenic | 25.0% |
| !!! | AAGGTAATGATTATTGATTC+AGG | - | chr5_3:56509893-56509912 | Msa0819760:CDS | 25.0% |
| !!! | AAAATGAAGGGTATCATAAA+AGG | - | chr5_3:56510182-56510201 | Msa0819760:intron | 25.0% |
| !!! | AAATAATAGAGTGTCTTTTG+AGG | - | chr5_3:56510309-56510328 | Msa0819760:intron | 25.0% |
| ! | TAAGCATAGTGAAGAATTAT+CGG | - | chr5_3:56510339-56510358 | Msa0819760:intron | 25.0% |
| ! | ACACATATTCTTATTCTGAA+AGG | + | chr5_3:56510366-56510385 | None:intergenic | 25.0% |
| !! | GTATGTAGTTTTCAATAAGT+TGG | - | chr5_3:56510458-56510477 | Msa0819760:intron | 25.0% |
| ! | TGATGGTACTAAAGTTAATT+TGG | - | chr5_3:56510573-56510592 | Msa0819760:intron | 25.0% |
| ! | TTATCAACTCCAAATTAACT+TGG | + | chr5_3:56510631-56510650 | None:intergenic | 25.0% |
| ! | AAGATATAAATCAGACCTAT+AGG | - | chr5_3:56510807-56510826 | Msa0819760:intron | 25.0% |
| !!! | AACTCTATTTGTTTTTGCAA+AGG | + | chr5_3:56510937-56510956 | None:intergenic | 25.0% |
| ! | ACAAGTTAAGGAACTAAAAA+AGG | + | chr5_3:56511342-56511361 | None:intergenic | 25.0% |
| ! | ACAACATATAGAATCACTTT+GGG | + | chr5_3:56511390-56511409 | None:intergenic | 25.0% |
| !!! | TGTGAAAAAGAATGGTTTTA+GGG | + | chr5_3:56507204-56507223 | None:intergenic | 25.0% |
| !!! | AGTTTTAGTGTGAAAAAGAA+TGG | + | chr5_3:56507212-56507231 | None:intergenic | 25.0% |
| ! | AGCAATTATTTCAGATTCAA+TGG | + | chr5_3:56507387-56507406 | None:intergenic | 25.0% |
| !!! | GTGAAAAAGAATGGTTTTAG+GGG | + | chr5_3:56507203-56507222 | None:intergenic | 30.0% |
| ! | GTGTGAAAAAGAATGGTTTT+AGG | + | chr5_3:56507205-56507224 | None:intergenic | 30.0% |
| ! | AATCACAACAACATCTCTTT+TGG | - | chr5_3:56507323-56507342 | Msa0819760:CDS | 30.0% |
| AAATAATTGCTCAACAGTTC+AGG | - | chr5_3:56507396-56507415 | Msa0819760:CDS | 30.0% | |
| TTCAGGTATCTCATGAAATT+CGG | - | chr5_3:56507413-56507432 | Msa0819760:CDS | 30.0% | |
| !! | TTCGGTGTTAAAAATTACGA+TGG | - | chr5_3:56507431-56507450 | Msa0819760:CDS | 30.0% |
| AAGTCAACCTTCTTAGTTAT+TGG | + | chr5_3:56507726-56507745 | None:intergenic | 30.0% | |
| AATAACTAAGAAGGTTGACT+TGG | - | chr5_3:56507725-56507744 | Msa0819760:intron | 30.0% | |
| TTTAGATGAAACTATTCCAC+GGG | + | chr5_3:56507861-56507880 | None:intergenic | 30.0% | |
| ! | AAACAACTGATTCATCCTAT+TGG | - | chr5_3:56507901-56507920 | Msa0819760:intron | 30.0% |
| AGTGATTAATAAGCTCCAAT+AGG | + | chr5_3:56507919-56507938 | None:intergenic | 30.0% | |
| !!! | CGCTATAATGTCACTTTTAT+AGG | - | chr5_3:56508136-56508155 | Msa0819760:CDS | 30.0% |
| TGTTATAAGTCAAGGTCATA+TGG | + | chr5_3:56508483-56508502 | None:intergenic | 30.0% | |
| ! | CTTTAAGAGAGAGTTAGTTT+AGG | + | chr5_3:56508914-56508933 | None:intergenic | 30.0% |
| TACCAAAATGATCATATGGA+AGG | - | chr5_3:56509008-56509027 | Msa0819760:CDS | 30.0% | |
| ! | ATCCTTCCATATGATCATTT+TGG | + | chr5_3:56509013-56509032 | None:intergenic | 30.0% |
| ACCGAAAGAACCATATATTT+AGG | - | chr5_3:56509068-56509087 | Msa0819760:CDS | 30.0% | |
| CCCTAAATATATGGTTCTTT+CGG | + | chr5_3:56509072-56509091 | None:intergenic | 30.0% | |
| CCGAAAGAACCATATATTTA+GGG | - | chr5_3:56509069-56509088 | Msa0819760:CDS | 30.0% | |
| AAGAACCATATATTTAGGGA+TGG | - | chr5_3:56509073-56509092 | Msa0819760:CDS | 30.0% | |
| TGTGATGATTTGAAGGATAT+CGG | - | chr5_3:56509350-56509369 | Msa0819760:CDS | 30.0% | |
| TTATCTTTAACTGGACATTC+TGG | + | chr5_3:56509383-56509402 | None:intergenic | 30.0% | |
| AAATTCCTTCTGATTTAGCA+AGG | + | chr5_3:56509445-56509464 | None:intergenic | 30.0% | |
| GCTAAATCAGAAGGAATTTA+TGG | - | chr5_3:56509446-56509465 | Msa0819760:CDS | 30.0% | |
| TTTGTAAACCAAAGATTAGC+TGG | + | chr5_3:56509473-56509492 | None:intergenic | 30.0% | |
| AAAGAAGGAACATTGAACAT+TGG | - | chr5_3:56509518-56509537 | Msa0819760:CDS | 30.0% | |
| AAGAAGGAACATTGAACATT+GGG | - | chr5_3:56509519-56509538 | Msa0819760:CDS | 30.0% | |
| AAAAGAATTAGATGGGAAAG+AGG | - | chr5_3:56509973-56509992 | Msa0819760:intron | 30.0% | |
| AAAGAATTAGATGGGAAAGA+GGG | - | chr5_3:56509974-56509993 | Msa0819760:intron | 30.0% | |
| !! | AGACAAAAATTGAGTTGAAG+AGG | - | chr5_3:56510080-56510099 | Msa0819760:intron | 30.0% |
| !! | GACAAAAATTGAGTTGAAGA+GGG | - | chr5_3:56510081-56510100 | Msa0819760:intron | 30.0% |
| TATATATGCTTAACAGTGCA+AGG | - | chr5_3:56510157-56510176 | Msa0819760:intron | 30.0% | |
| TGTATATATGCTATGCCATT+TGG | - | chr5_3:56510385-56510404 | Msa0819760:intron | 30.0% | |
| TGTGATAAATGTGTGGTTAT+TGG | - | chr5_3:56510436-56510455 | Msa0819760:intron | 30.0% | |
| AAAGAAAGAGATACAAAGAC+TGG | - | chr5_3:56510740-56510759 | Msa0819760:intron | 30.0% | |
| AAGAAAGAGATACAAAGACT+GGG | - | chr5_3:56510741-56510760 | Msa0819760:intron | 30.0% | |
| TTTGTAAAGATAGAATTGGG+TGG | + | chr5_3:56510835-56510854 | None:intergenic | 30.0% | |
| TACAAAACTTCACTGATCAA+AGG | - | chr5_3:56510849-56510868 | Msa0819760:intron | 30.0% | |
| CAATAAATACACAAAGGGTA+TGG | + | chr5_3:56511268-56511287 | None:intergenic | 30.0% | |
| GACAACATATAGAATCACTT+TGG | + | chr5_3:56511391-56511410 | None:intergenic | 30.0% | |
| GGAAGAGTTCTTATATATAG+AGG | + | chr5_3:56511622-56511641 | None:intergenic | 30.0% | |
| !!! | GTGAAAAAGAATGGTTTTAG+GGG | + | chr5_3:56507203-56507222 | None:intergenic | 30.0% |
| ! | GTGTGAAAAAGAATGGTTTT+AGG | + | chr5_3:56507205-56507224 | None:intergenic | 30.0% |
| ! | AATCACAACAACATCTCTTT+TGG | - | chr5_3:56507323-56507342 | Msa0819760:CDS | 30.0% |
| AAATAATTGCTCAACAGTTC+AGG | - | chr5_3:56507396-56507415 | Msa0819760:CDS | 30.0% | |
| TTCAGGTATCTCATGAAATT+CGG | - | chr5_3:56507413-56507432 | Msa0819760:CDS | 30.0% | |
| !! | TTCGGTGTTAAAAATTACGA+TGG | - | chr5_3:56507431-56507450 | Msa0819760:CDS | 30.0% |
| TAAGTACTACAATGCATGCA+TGG | + | chr5_3:56507135-56507154 | None:intergenic | 35.0% | |
| !!! | TAGGTTTTGAGTACTAGCAT+CGG | + | chr5_3:56507273-56507292 | None:intergenic | 35.0% |
| GCTAGTACTCAAAACCTAAA+CGG | - | chr5_3:56507275-56507294 | Msa0819760:CDS | 35.0% | |
| GGTTAAAGAAGATGCATCTA+GGG | + | chr5_3:56507366-56507385 | None:intergenic | 35.0% | |
| TGGTTAAAGAAGATGCATCT+AGG | + | chr5_3:56507367-56507386 | None:intergenic | 35.0% | |
| GGAATGGCATATGTATCTTT+GGG | + | chr5_3:56507467-56507486 | None:intergenic | 35.0% | |
| TGGAATGGCATATGTATCTT+TGG | + | chr5_3:56507468-56507487 | None:intergenic | 35.0% | |
| AAGACTTGTGAATCTAACCA+AGG | - | chr5_3:56507521-56507540 | Msa0819760:CDS | 35.0% | |
| AAGACTGCAGAAATACAAAG+CGG | - | chr5_3:56508445-56508464 | Msa0819760:intron | 35.0% | |
| AACCATATATTTAGGGATGG+AGG | - | chr5_3:56509076-56509095 | Msa0819760:CDS | 35.0% | |
| TACCTCCATCCCTAAATATA+TGG | + | chr5_3:56509081-56509100 | None:intergenic | 35.0% | |
| TCCAAGATGTGATGATTTGA+AGG | - | chr5_3:56509343-56509362 | Msa0819760:CDS | 35.0% | |
| TCCTTCAAATCATCACATCT+TGG | + | chr5_3:56509347-56509366 | None:intergenic | 35.0% | |
| AAAGACCTTGCTAAATCAGA+AGG | - | chr5_3:56509437-56509456 | Msa0819760:CDS | 35.0% | |
| TTTATGGTCCAGCTAATCTT+TGG | - | chr5_3:56509462-56509481 | Msa0819760:CDS | 35.0% | |
| ! | ATCATCTTTCTCTTTTGTGC+TGG | + | chr5_3:56509558-56509577 | None:intergenic | 35.0% |
| !! | CTATGAGCAAGTTCACTTTT+GGG | - | chr5_3:56509714-56509733 | Msa0819760:CDS | 35.0% |
| ! | GAATGGTCTTGATCTGTTAA+AGG | + | chr5_3:56509773-56509792 | None:intergenic | 35.0% |
| ACAAGTGTTACGAGAAAGAT+GGG | - | chr5_3:56510017-56510036 | Msa0819760:intron | 35.0% | |
| ! | ATGCTATGCCATTTGGTATA+AGG | - | chr5_3:56510392-56510411 | Msa0819760:intron | 35.0% |
| ! | TATAGCAGCCTTATACCAAA+TGG | + | chr5_3:56510403-56510422 | None:intergenic | 35.0% |
| CACATTTATCACATGACTAG+AGG | + | chr5_3:56510429-56510448 | None:intergenic | 35.0% | |
| CTAGTCATGTGATAAATGTG+TGG | - | chr5_3:56510429-56510448 | Msa0819760:intron | 35.0% | |
| AGAAAGAGATACAAAGACTG+GGG | - | chr5_3:56510742-56510761 | Msa0819760:intron | 35.0% | |
| TAGAGTTCAATTTCAGCGAA+TGG | - | chr5_3:56510950-56510969 | Msa0819760:intron | 35.0% | |
| ! | TGTTTGAAACCTGTTGTGTT+TGG | + | chr5_3:56511147-56511166 | None:intergenic | 35.0% |
| TTAACAGAACCATACCCTTT+CGG | - | chr5_3:56511231-56511250 | Msa0819760:intron | 35.0% | |
| ! | TGGTTCTATTAAACCCGAAA+GGG | + | chr5_3:56511248-56511267 | None:intergenic | 35.0% |
| ! | ATGGTTCTATTAAACCCGAA+AGG | + | chr5_3:56511249-56511268 | None:intergenic | 35.0% |
| TCTTCATTCTATAGTACACG+TGG | + | chr5_3:56511520-56511539 | None:intergenic | 35.0% | |
| ACGTGTACTATAGAATGAAG+AGG | - | chr5_3:56511519-56511538 | Msa0819760:intron | 35.0% | |
| CGTGTACTATAGAATGAAGA+GGG | - | chr5_3:56511520-56511539 | Msa0819760:intron | 35.0% | |
| GTGTACTATAGAATGAAGAG+GGG | - | chr5_3:56511521-56511540 | Msa0819760:intron | 35.0% | |
| AAGTACTACAATGCATGCAT+GGG | + | chr5_3:56507134-56507153 | None:intergenic | 35.0% | |
| TAAGTACTACAATGCATGCA+TGG | + | chr5_3:56507135-56507154 | None:intergenic | 35.0% | |
| !!! | TAGGTTTTGAGTACTAGCAT+CGG | + | chr5_3:56507273-56507292 | None:intergenic | 35.0% |
| GCTAGTACTCAAAACCTAAA+CGG | - | chr5_3:56507275-56507294 | Msa0819760:CDS | 35.0% | |
| GGTTAAAGAAGATGCATCTA+GGG | + | chr5_3:56507366-56507385 | None:intergenic | 35.0% | |
| TGGTTAAAGAAGATGCATCT+AGG | + | chr5_3:56507367-56507386 | None:intergenic | 35.0% | |
| GGAATGGCATATGTATCTTT+GGG | + | chr5_3:56507467-56507486 | None:intergenic | 35.0% | |
| TGGAATGGCATATGTATCTT+TGG | + | chr5_3:56507468-56507487 | None:intergenic | 35.0% | |
| AAGACTTGTGAATCTAACCA+AGG | - | chr5_3:56507521-56507540 | Msa0819760:CDS | 35.0% | |
| AGCTCAAATTGGATTTACCT+TGG | + | chr5_3:56512063-56512082 | None:intergenic | 35.0% | |
| !!! | GGTTTTAGGGGATGCATTTT+GGG | + | chr5_3:56507191-56507210 | None:intergenic | 40.0% |
| !!! | TGGTTTTAGGGGATGCATTT+TGG | + | chr5_3:56507192-56507211 | None:intergenic | 40.0% |
| GCTCGATGTTTAAACCGTTT+AGG | + | chr5_3:56507292-56507311 | None:intergenic | 40.0% | |
| ! | AGCGATCTCATATGGCTTTA+TGG | - | chr5_3:56507497-56507516 | Msa0819760:CDS | 40.0% |
| GAGTATAATAAGTACTCCCG+TGG | - | chr5_3:56507842-56507861 | Msa0819760:intron | 40.0% | |
| TCTACGCGGCATGATTTAAT+CGG | - | chr5_3:56508186-56508205 | Msa0819760:CDS | 40.0% | |
| ! | GCTTTGTATTTCTGCAGTCT+TGG | + | chr5_3:56508446-56508465 | None:intergenic | 40.0% |
| TGTCTTAATCGTAAGTGCAC+AGG | + | chr5_3:56509123-56509142 | None:intergenic | 40.0% | |
| AGCATGTATCAAGAAGCCTA+AGG | - | chr5_3:56509301-56509320 | Msa0819760:CDS | 40.0% | |
| GAAACCACATGCGATAAAGA+AGG | - | chr5_3:56509503-56509522 | Msa0819760:CDS | 40.0% | |
| TGTTCCTTCTTTATCGCATG+TGG | + | chr5_3:56509510-56509529 | None:intergenic | 40.0% | |
| !! | TCTTTCTCTTTTGTGCTGGT+TGG | + | chr5_3:56509554-56509573 | None:intergenic | 40.0% |
| GATGAAGAACCAAAAAGCCA+AGG | - | chr5_3:56509575-56509594 | Msa0819760:CDS | 40.0% | |
| TCGTTTCTGCGACAAAATTG+TGG | + | chr5_3:56509680-56509699 | None:intergenic | 40.0% | |
| ! | GCTATGAGCAAGTTCACTTT+TGG | - | chr5_3:56509713-56509732 | Msa0819760:CDS | 40.0% |
| TGACGAGTGTCATCACTTAT+CGG | + | chr5_3:56509866-56509885 | None:intergenic | 40.0% | |
| CACAAGTGTTACGAGAAAGA+TGG | - | chr5_3:56510016-56510035 | Msa0819760:intron | 40.0% | |
| ACAGTGCAAGGAGAAAATGA+AGG | - | chr5_3:56510169-56510188 | Msa0819760:intron | 40.0% | |
| CAGTGCAAGGAGAAAATGAA+GGG | - | chr5_3:56510170-56510189 | Msa0819760:intron | 40.0% | |
| ATAAAAGGCTGCGTAGCTAT+TGG | - | chr5_3:56510197-56510216 | Msa0819760:intron | 40.0% | |
| ACACTTACACCGCATATACT+TGG | - | chr5_3:56510238-56510257 | Msa0819760:intron | 40.0% | |
| ACCGCATATACTTGGAAGTA+GGG | - | chr5_3:56510246-56510265 | Msa0819760:intron | 40.0% | |
| GTAATGTGCATTAGTGTGCA+TGG | - | chr5_3:56510519-56510538 | Msa0819760:intron | 40.0% | |
| GAAAGAGATACAAAGACTGG+GGG | - | chr5_3:56510743-56510762 | Msa0819760:intron | 40.0% | |
| !!! | TTCCATTTTGGGTTGTACCT+GGG | + | chr5_3:56510783-56510802 | None:intergenic | 40.0% |
| !!! | ATTCCATTTTGGGTTGTACC+TGG | + | chr5_3:56510784-56510803 | None:intergenic | 40.0% |
| TAGAATTGGGTGGTTCCTAT+AGG | + | chr5_3:56510825-56510844 | None:intergenic | 40.0% | |
| !! | ACTTGGATTTGTTACCGTGT+TGG | + | chr5_3:56510984-56511003 | None:intergenic | 40.0% |
| ! | TATGCTTGCTGCTTGATTCA+GGG | + | chr5_3:56511017-56511036 | None:intergenic | 40.0% |
| ! | TTATGCTTGCTGCTTGATTC+AGG | + | chr5_3:56511018-56511037 | None:intergenic | 40.0% |
| GAATCAAGCAGCAAGCATAA+AGG | - | chr5_3:56511018-56511037 | Msa0819760:intron | 40.0% | |
| CATCTTGTATGCCTACACTA+CGG | + | chr5_3:56511063-56511082 | None:intergenic | 40.0% | |
| CCAAATCTGTTGAGATTTGC+AGG | + | chr5_3:56511094-56511113 | None:intergenic | 40.0% | |
| CCTGCAAATCTCAACAGATT+TGG | - | chr5_3:56511091-56511110 | Msa0819760:intron | 40.0% | |
| TTGAAACCTGTTGTGTTTGG+TGG | + | chr5_3:56511144-56511163 | None:intergenic | 40.0% | |
| GGTCTGACTACTAAACGTAT+TGG | + | chr5_3:56511201-56511220 | None:intergenic | 40.0% | |
| GTTTAGTAGTCAGACCCTTT+CGG | - | chr5_3:56511205-56511224 | Msa0819760:intron | 40.0% | |
| TTTAGTAGTCAGACCCTTTC+GGG | - | chr5_3:56511206-56511225 | Msa0819760:intron | 40.0% | |
| GGTTCTGTTAAAACCCGAAA+GGG | + | chr5_3:56511222-56511241 | None:intergenic | 40.0% | |
| ! | TGGTTCTGTTAAAACCCGAA+AGG | + | chr5_3:56511223-56511242 | None:intergenic | 40.0% |
| TAACAGAACCATACCCTTTC+GGG | - | chr5_3:56511232-56511251 | Msa0819760:intron | 40.0% | |
| CTATTAAACCCGAAAGGGTA+TGG | + | chr5_3:56511243-56511262 | None:intergenic | 40.0% | |
| !! | TTCCTTAACTTGTGCCCTTA+GGG | - | chr5_3:56511349-56511368 | Msa0819760:intron | 40.0% |
| !! | CATGTTAACTTGTGCCCTAA+GGG | + | chr5_3:56511366-56511385 | None:intergenic | 40.0% |
| !! | TCATGTTAACTTGTGCCCTA+AGG | + | chr5_3:56511367-56511386 | None:intergenic | 40.0% |
| CATGCATGGGAAGTTAATGT+AGG | + | chr5_3:56511643-56511662 | None:intergenic | 40.0% | |
| !!! | GGTTTTAGGGGATGCATTTT+GGG | + | chr5_3:56507191-56507210 | None:intergenic | 40.0% |
| !!! | TGGTTTTAGGGGATGCATTT+TGG | + | chr5_3:56507192-56507211 | None:intergenic | 40.0% |
| GCTCGATGTTTAAACCGTTT+AGG | + | chr5_3:56507292-56507311 | None:intergenic | 40.0% | |
| ! | AGCGATCTCATATGGCTTTA+TGG | - | chr5_3:56507497-56507516 | Msa0819760:CDS | 40.0% |
| ACATATGCCATTCCAGACAC+CGG | - | chr5_3:56507473-56507492 | Msa0819760:CDS | 45.0% | |
| AAGCCATATGAGATCGCTTC+CGG | + | chr5_3:56507495-56507514 | None:intergenic | 45.0% | |
| CCTAAGGAGAGTTTCGATTG+CGG | - | chr5_3:56509317-56509336 | Msa0819760:CDS | 45.0% | |
| !! | CCAACAACTCCTTGGCTTTT+TGG | + | chr5_3:56509587-56509606 | None:intergenic | 45.0% |
| CCAAAAAGCCAAGGAGTTGT+TGG | - | chr5_3:56509584-56509603 | Msa0819760:CDS | 45.0% | |
| ATCCAAGTCCAACAACTCCT+TGG | + | chr5_3:56509595-56509614 | None:intergenic | 45.0% | |
| GAGTTGTTGGACTTGGATCT+GGG | - | chr5_3:56509597-56509616 | Msa0819760:CDS | 45.0% | |
| TGACACTCGTCAAGCTCATA+AGG | - | chr5_3:56509874-56509893 | Msa0819760:CDS | 45.0% | |
| GGGAAAGAGGGAGAAAAGAA+AGG | - | chr5_3:56509986-56510005 | Msa0819760:intron | 45.0% | |
| TAGCTATTGGAAGTCAGAGG+AGG | - | chr5_3:56510210-56510229 | Msa0819760:intron | 45.0% | |
| CACCGCATATACTTGGAAGT+AGG | - | chr5_3:56510245-56510264 | Msa0819760:intron | 45.0% | |
| GCCCTACTTCCAAGTATATG+CGG | + | chr5_3:56510250-56510269 | None:intergenic | 45.0% | |
| ! | TAGGGCACAGATGGATTTCT+TGG | - | chr5_3:56510264-56510283 | Msa0819760:intron | 45.0% |
| !! | TGGATTTGTTACCGTGTTGG+CGG | + | chr5_3:56510981-56511000 | None:intergenic | 45.0% |
| !! | AGCACAAAGTACCGTAGTGT+AGG | - | chr5_3:56511049-56511068 | Msa0819760:intron | 45.0% |
| ACGCGTAAGAACTTAGATCG+AGG | - | chr5_3:56511168-56511187 | Msa0819760:intron | 45.0% | |
| CGCGTAAGAACTTAGATCGA+GGG | - | chr5_3:56511169-56511188 | Msa0819760:intron | 45.0% | |
| !! | GTTCCTTAACTTGTGCCCTT+AGG | - | chr5_3:56511348-56511367 | Msa0819760:intron | 45.0% |
| ACATATGCCATTCCAGACAC+CGG | - | chr5_3:56507473-56507492 | Msa0819760:CDS | 45.0% | |
| AAGCCATATGAGATCGCTTC+CGG | + | chr5_3:56507495-56507514 | None:intergenic | 45.0% | |
| !! | TTGAAAATTATTATAAATAA+GGG | + | chr5_3:56508592-56508611 | None:intergenic | 5.0% |
| !! | ATTGAAAATTATTATAAATA+AGG | + | chr5_3:56508593-56508612 | None:intergenic | 5.0% |
| !!! | TATATTTTTTAAATAAATAG+GGG | + | chr5_3:56508858-56508877 | None:intergenic | 5.0% |
| !! | ACTAGCATCGGCAAGTGGTT+GGG | + | chr5_3:56507261-56507280 | None:intergenic | 50.0% |
| !! | TACTAGCATCGGCAAGTGGT+TGG | + | chr5_3:56507262-56507281 | None:intergenic | 50.0% |
| !! | TGAGTACTAGCATCGGCAAG+TGG | + | chr5_3:56507266-56507285 | None:intergenic | 50.0% |
| ACACCGGAAGCGATCTCATA+TGG | - | chr5_3:56507489-56507508 | Msa0819760:CDS | 50.0% | |
| CCGCAATCGAAACTCTCCTT+AGG | + | chr5_3:56509320-56509339 | None:intergenic | 50.0% | |
| AGCCAAGGAGTTGTTGGACT+TGG | - | chr5_3:56509590-56509609 | Msa0819760:CDS | 50.0% | |
| GGAGTTGTTGGACTTGGATC+TGG | - | chr5_3:56509596-56509615 | Msa0819760:CDS | 50.0% | |
| !! | AGCAAGTTCACTTTTGGGCG+CGG | - | chr5_3:56509719-56509738 | Msa0819760:CDS | 50.0% |
| GCGTAGCTATTGGAAGTCAG+AGG | - | chr5_3:56510207-56510226 | Msa0819760:intron | 50.0% | |
| ACTTGGAAGTAGGGCACAGA+TGG | - | chr5_3:56510255-56510274 | Msa0819760:intron | 50.0% | |
| ! | GGCACAGATGGATTTCTTGG+TGG | - | chr5_3:56510267-56510286 | Msa0819760:intron | 50.0% |
| !!! | TTTTGGGTTGTACCTGGGTC+AGG | + | chr5_3:56510778-56510797 | None:intergenic | 50.0% |
| GACCCAGGTACAACCCAAAA+TGG | - | chr5_3:56510778-56510797 | Msa0819760:intron | 50.0% | |
| TGCTTGATTCAGGGAGCTGT+CGG | + | chr5_3:56511008-56511027 | None:intergenic | 50.0% | |
| GTCAAGCCACCAAACACAAC+AGG | - | chr5_3:56511135-56511154 | Msa0819760:intron | 50.0% | |
| ! | TGCCCTAAGGGCACAAGTTA+AGG | + | chr5_3:56511354-56511373 | None:intergenic | 50.0% |
| !! | ACTAGCATCGGCAAGTGGTT+GGG | + | chr5_3:56507261-56507280 | None:intergenic | 50.0% |
| !! | TACTAGCATCGGCAAGTGGT+TGG | + | chr5_3:56507262-56507281 | None:intergenic | 50.0% |
| !! | TGAGTACTAGCATCGGCAAG+TGG | + | chr5_3:56507266-56507285 | None:intergenic | 50.0% |
| ACACCGGAAGCGATCTCATA+TGG | - | chr5_3:56507489-56507508 | Msa0819760:CDS | 50.0% | |
| ATCGCTTCCGGTGTCTGGAA+TGG | + | chr5_3:56507483-56507502 | None:intergenic | 55.0% | |
| ATGAGATCGCTTCCGGTGTC+TGG | + | chr5_3:56507488-56507507 | None:intergenic | 55.0% | |
| GGGTACATTAGACCTGACCC+AGG | - | chr5_3:56510763-56510782 | Msa0819760:intron | 55.0% | |
| GAATGGATCGACCGCCAACA+CGG | - | chr5_3:56510967-56510986 | Msa0819760:intron | 55.0% | |
| ATCGCTTCCGGTGTCTGGAA+TGG | + | chr5_3:56507483-56507502 | None:intergenic | 55.0% | |
| ATGAGATCGCTTCCGGTGTC+TGG | + | chr5_3:56507488-56507507 | None:intergenic | 55.0% | |
| !! | GTTCACTTTTGGGCGCGGTG+TGG | - | chr5_3:56509724-56509743 | Msa0819760:CDS | 60.0% |
| TTCAGGGAGCTGTCGGCACT+TGG | + | chr5_3:56511001-56511020 | None:intergenic | 60.0% | |
| CAACCGAGCGAACCCGCGTA+CGG | - | chr5_3:56510874-56510893 | Msa0819760:intron | 65.0% | |
| AACCGAGCGAACCCGCGTAC+GGG | - | chr5_3:56510875-56510894 | Msa0819760:intron | 65.0% | |
| TTGGTTTCGCGCCCGTACGC+GGG | + | chr5_3:56510889-56510908 | None:intergenic | 65.0% | |
| CTTGGTTTCGCGCCCGTACG+CGG | + | chr5_3:56510890-56510909 | None:intergenic | 65.0% | |
| CGCCCGTACGCGGGTTCGCT+CGG | + | chr5_3:56510880-56510899 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 56507132 | 56512090 | 56507132 | ID=Msa0819760;Name=Msa0819760 |
| chr5_3 | mRNA | 56507132 | 56512090 | 56507132 | ID=Msa0819760-mRNA-1;Parent=Msa0819760;Name=Msa0819760-mRNA-1;_AED=0.26;_eAED=0.26;_QI=62|0.33|0.25|0.5|1|1|4|0|652 |
| chr5_3 | exon | 56507132 | 56507551 | 56507132 | ID=Msa0819760-mRNA-1:exon:17089;Parent=Msa0819760-mRNA-1 |
| chr5_3 | exon | 56508066 | 56508269 | 56508066 | ID=Msa0819760-mRNA-1:exon:17088;Parent=Msa0819760-mRNA-1 |
| chr5_3 | exon | 56508991 | 56509976 | 56508991 | ID=Msa0819760-mRNA-1:exon:17087;Parent=Msa0819760-mRNA-1 |
| chr5_3 | exon | 56511680 | 56512090 | 56511680 | ID=Msa0819760-mRNA-1:exon:17086;Parent=Msa0819760-mRNA-1 |
| chr5_3 | five_prime_UTR | 56512029 | 56512090 | 56512029 | ID=Msa0819760-mRNA-1:five_prime_utr;Parent=Msa0819760-mRNA-1 |
| chr5_3 | CDS | 56511680 | 56512028 | 56511680 | ID=Msa0819760-mRNA-1:cds;Parent=Msa0819760-mRNA-1 |
| chr5_3 | CDS | 56508991 | 56509976 | 56508991 | ID=Msa0819760-mRNA-1:cds;Parent=Msa0819760-mRNA-1 |
| chr5_3 | CDS | 56508066 | 56508269 | 56508066 | ID=Msa0819760-mRNA-1:cds;Parent=Msa0819760-mRNA-1 |
| chr5_3 | CDS | 56507132 | 56507551 | 56507132 | ID=Msa0819760-mRNA-1:cds;Parent=Msa0819760-mRNA-1 |
| Gene Sequence |
| Protein sequence |
