Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0782340 | TKY56988.1 | 31.317 | 463 | 237 | 20 | 29 | 480 | 23 | 415 | 9.10e-40 | 159 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0782340 | A0A392MSZ3 | 60.331 | 121 | 40 | 4 | 1 | 116 | 1 | 118 | 3.10e-25 | 110 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0082550 | Msa0782340 | 0.811720 | 6.078878e-51 | -8.615850e-47 |
| Msa0739410 | Msa0782340 | 0.869673 | 2.595259e-66 | -8.615850e-47 |
| Msa0782340 | Msa0790230 | 0.804100 | 2.539618e-49 | -8.615850e-47 |
| Msa0782340 | Msa0819760 | 0.824894 | 6.303680e-54 | -8.615850e-47 |
| Msa0782340 | Msa0891010 | 0.807499 | 4.905220e-50 | -8.615850e-47 |
| Msa0782340 | Msa1009000 | 0.814807 | 1.276166e-51 | -8.615850e-47 |
| Msa0782340 | Msa1204910 | 0.800840 | 1.193493e-48 | -8.615850e-47 |
| Msa0782340 | Msa1295010 | 0.806730 | 7.137131e-50 | -8.615850e-47 |
| Msa0782340 | Msa1329990 | 0.804902 | 1.728165e-49 | -8.615850e-47 |
| Msa0782340 | Msa1343340 | 0.801473 | 8.858571e-49 | -8.615850e-47 |
| Msa0782340 | Msa1400470 | 0.816777 | 4.641659e-52 | -8.615850e-47 |
| Msa0138240 | Msa0782340 | 0.816714 | 4.795883e-52 | -8.615850e-47 |
| Msa0371540 | Msa0782340 | 0.803886 | 2.813763e-49 | -8.615850e-47 |
| Msa0457370 | Msa0782340 | 0.802853 | 4.605453e-49 | -8.615850e-47 |
| Msa0304990 | Msa0782340 | 0.832380 | 9.771820e-56 | -8.615850e-47 |
| Msa0517340 | Msa0782340 | 0.803447 | 3.470752e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0782340 | MtrunA17_Chr5g0435871 | 25.977 | 435 | 230 | 21 | 59 | 478 | 73 | 430 | 7.49e-18 | 85.9 |
| Msa0782340 | MtrunA17_Chr8g0352661 | 26.066 | 422 | 229 | 20 | 64 | 471 | 75 | 427 | 1.93e-17 | 84.7 |
| Msa0782340 | MtrunA17_Chr5g0435971 | 26.207 | 435 | 229 | 20 | 59 | 478 | 70 | 427 | 2.55e-17 | 84.3 |
| Msa0782340 | MtrunA17_Chr8g0386441 | 25.634 | 355 | 210 | 14 | 54 | 400 | 68 | 376 | 3.86e-17 | 83.6 |
| Msa0782340 | MtrunA17_Chr6g0486981 | 25.355 | 422 | 236 | 21 | 67 | 478 | 80 | 432 | 1.44e-16 | 82.0 |
| Msa0782340 | MtrunA17_Chr2g0333991 | 25.617 | 324 | 199 | 13 | 91 | 406 | 99 | 388 | 2.05e-15 | 78.2 |
| Msa0782340 | MtrunA17_Chr2g0308001 | 25.212 | 353 | 216 | 13 | 63 | 406 | 46 | 359 | 2.62e-15 | 78.2 |
| Msa0782340 | MtrunA17_Chr8g0352671 | 27.350 | 351 | 192 | 17 | 66 | 400 | 80 | 383 | 4.90e-14 | 73.9 |
| Msa0782340 | MtrunA17_Chr2g0310831 | 25.829 | 422 | 216 | 20 | 66 | 468 | 85 | 428 | 6.21e-14 | 73.9 |
| Msa0782340 | MtrunA17_Chr2g0311451 | 24.768 | 323 | 203 | 13 | 91 | 406 | 99 | 388 | 6.26e-14 | 73.9 |
| Msa0782340 | MtrunA17_Chr5g0419291 | 23.310 | 429 | 246 | 19 | 59 | 478 | 70 | 424 | 6.59e-13 | 70.5 |
| Msa0782340 | MtrunA17_Chr1g0179091 | 28.346 | 254 | 139 | 13 | 227 | 478 | 150 | 362 | 4.84e-12 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0782340 | AT2G03200.1 | 25.208 | 361 | 183 | 16 | 76 | 406 | 107 | 410 | 1.76e-13 | 72.8 |
Find 81 sgRNAs with CRISPR-Local
Find 174 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTAAATCAGAAGGAATTTA+TGG | 0.217782 | 5_2:-65280590 | Msa0782340:CDS |
| AATCACAACAACATCTCTTT+TGG | 0.240744 | 5_2:-65282712 | Msa0782340:CDS |
| GCTATGAGCAAGTTCACTTT+TGG | 0.280909 | 5_2:-65280323 | Msa0782340:CDS |
| AGCGATCTCATATGGCTTTA+TGG | 0.283710 | 5_2:-65282538 | Msa0782340:CDS |
| ATGCTATGCCATTTGGTATA+AGG | 0.303076 | 5_2:-65279644 | Msa0782340:three_prime_UTR |
| AAGGTAATGATTATTGATTC+AGG | 0.310716 | 5_2:-65280143 | Msa0782340:CDS |
| TTATCTTTAAGTGGACATTC+TGG | 0.313645 | 5_2:+65280656 | None:intergenic |
| GAATGGTCTTGATCTGTTAA+AGG | 0.324061 | 5_2:+65280266 | None:intergenic |
| TAGGGCACAGATGGATTTCT+TGG | 0.326909 | 5_2:-65279772 | Msa0782340:CDS |
| TGGAATGGCATATGTATCTT+TGG | 0.327787 | 5_2:+65282570 | None:intergenic |
| AAAATGAAGGGTATCATAAA+AGG | 0.339578 | 5_2:-65279854 | Msa0782340:CDS |
| TTTATGGTCCAGCTAATCTT+TGG | 0.343745 | 5_2:-65280574 | Msa0782340:CDS |
| GGAGTTGTTGGACTTGGATC+TGG | 0.346598 | 5_2:-65280440 | Msa0782340:CDS |
| ATGAGATCGCTTCCGGTGTC+TGG | 0.356075 | 5_2:+65282550 | None:intergenic |
| TGTGATAAATGTGTGGTTAT+TGG | 0.366146 | 5_2:-65279600 | Msa0782340:three_prime_UTR |
| GCTCGATGTTTAAACCGTTT+AGG | 0.380430 | 5_2:+65282746 | None:intergenic |
| AGCAATTATTTCAGATTCAA+TGG | 0.381469 | 5_2:+65282651 | None:intergenic |
| AAGAAGGAACATTGAACATT+GGG | 0.393773 | 5_2:-65280517 | Msa0782340:CDS |
| AAATAATTGCTCAACAGTTC+AGG | 0.397781 | 5_2:-65282639 | Msa0782340:CDS |
| TCTTTATCTTTATCTTTAAG+TGG | 0.398904 | 5_2:+65280647 | None:intergenic |
| TAAGCATAGTGAAGAATTAT+CGG | 0.403413 | 5_2:-65279697 | Msa0782340:CDS |
| ATAAAAGGCTGCGTAGCTAT+TGG | 0.410038 | 5_2:-65279839 | Msa0782340:CDS |
| AGCCAAGGAGTTGTTGGACT+TGG | 0.412091 | 5_2:-65280446 | Msa0782340:CDS |
| TGACGAGTGTCATCACTTAT+CGG | 0.419794 | 5_2:+65280173 | None:intergenic |
| AAGCCATATGAGATCGCTTC+CGG | 0.423924 | 5_2:+65282543 | None:intergenic |
| TTTGTAAACCAAAGATTAGC+TGG | 0.424694 | 5_2:+65280566 | None:intergenic |
| ACACTTACACCGCATATACT+TGG | 0.430867 | 5_2:-65279798 | Msa0782340:CDS |
| TCCAAGATGTGATGATTTGA+AGG | 0.431291 | 5_2:-65280693 | Msa0782340:CDS |
| TCCTTCAAATCATCACATCT+TGG | 0.433083 | 5_2:+65280692 | None:intergenic |
| AAAAGAATTAGATGGGAAAG+AGG | 0.438382 | 5_2:-65280063 | Msa0782340:CDS |
| TTCAGGTATCTCATGAAATT+CGG | 0.440637 | 5_2:-65282622 | Msa0782340:CDS |
| GGAATGGCATATGTATCTTT+GGG | 0.443169 | 5_2:+65282571 | None:intergenic |
| TGTGATGATTTGAAGGATAT+CGG | 0.443834 | 5_2:-65280686 | Msa0782340:CDS |
| TTATAATAACAATGCTATGA+TGG | 0.445293 | 5_2:-65279480 | Msa0782340:three_prime_UTR |
| TGGTTAAAGAAGATGCATCT+AGG | 0.449166 | 5_2:+65282671 | None:intergenic |
| ACACCGGAAGCGATCTCATA+TGG | 0.453558 | 5_2:-65282546 | Msa0782340:CDS |
| GGCACAGATGGATTTCTTGG+TGG | 0.464524 | 5_2:-65279769 | Msa0782340:CDS |
| TGTATATATGCTATGCCATT+TGG | 0.470806 | 5_2:-65279651 | Msa0782340:three_prime_UTR |
| ACTAGCATCGGCAAGTGGTT+GGG | 0.472163 | 5_2:+65282777 | None:intergenic |
| TACTAGCATCGGCAAGTGGT+TGG | 0.475730 | 5_2:+65282776 | None:intergenic |
| TGACACTCGTCAAGCTCATA+AGG | 0.481324 | 5_2:-65280162 | Msa0782340:CDS |
| GCTAGTACTCAAAACCTAAA+CGG | 0.482408 | 5_2:-65282760 | Msa0782340:CDS |
| ATCCAAGTCCAACAACTCCT+TGG | 0.492625 | 5_2:+65280444 | None:intergenic |
| AAAGAATTAGATGGGAAAGA+GGG | 0.492739 | 5_2:-65280062 | Msa0782340:CDS |
| CACAAGTGTTACGAGAAAGA+TGG | 0.496565 | 5_2:-65280020 | Msa0782340:CDS |
| AAAGAAGGAACATTGAACAT+TGG | 0.499741 | 5_2:-65280518 | Msa0782340:CDS |
| TAAGTACTACAATGCATGCA+TGG | 0.509293 | 5_2:+65282903 | None:intergenic |
| TATACTTATACAGATAAAGA+AGG | 0.512321 | 5_2:-65279915 | Msa0782340:CDS |
| CATCTTAAAAGTATTTATGT+AGG | 0.512889 | 5_2:-65280218 | Msa0782340:CDS |
| GGGAAAGAGGGAGAAAAGAA+AGG | 0.514345 | 5_2:-65280050 | Msa0782340:CDS |
| TGTTCCTTCTTTATCGCATG+TGG | 0.517983 | 5_2:+65280529 | None:intergenic |
| CCGCAATCGAAACTCTCCTT+AGG | 0.520181 | 5_2:+65280719 | None:intergenic |
| TATAGCAGCCTTATACCAAA+TGG | 0.522877 | 5_2:+65279636 | None:intergenic |
| ACTTGGAAGTAGGGCACAGA+TGG | 0.526284 | 5_2:-65279781 | Msa0782340:CDS |
| GAGTTGTTGGACTTGGATCT+GGG | 0.528801 | 5_2:-65280439 | Msa0782340:CDS |
| ATCGCTTCCGGTGTCTGGAA+TGG | 0.534464 | 5_2:+65282555 | None:intergenic |
| GGTTAAAGAAGATGCATCTA+GGG | 0.537784 | 5_2:+65282672 | None:intergenic |
| ACAAGTGTTACGAGAAAGAT+GGG | 0.545256 | 5_2:-65280019 | Msa0782340:CDS |
| AAAGACCTTGCTAAATCAGA+AGG | 0.552586 | 5_2:-65280599 | Msa0782340:CDS |
| ACCGCATATACTTGGAAGTA+GGG | 0.554688 | 5_2:-65279790 | Msa0782340:CDS |
| TATATATGCTTAACAGTGCA+AGG | 0.561224 | 5_2:-65279879 | Msa0782340:CDS |
| CACCGCATATACTTGGAAGT+AGG | 0.563765 | 5_2:-65279791 | Msa0782340:CDS |
| ACACATATTCTTATTCTGAA+AGG | 0.569596 | 5_2:+65279673 | None:intergenic |
| AAATTCCTTCTGATTTAGCA+AGG | 0.571254 | 5_2:+65280594 | None:intergenic |
| GAAACCACATGCGATAAAGA+AGG | 0.587474 | 5_2:-65280533 | Msa0782340:CDS |
| TCGTTTCTGCGACAAAATTG+TGG | 0.590151 | 5_2:+65280359 | None:intergenic |
| AAGTACTACAATGCATGCAT+GGG | 0.594341 | 5_2:+65282904 | None:intergenic |
| GTAATGTGCATTAGTGTGCA+TGG | 0.594476 | 5_2:-65279517 | Msa0782340:three_prime_UTR |
| ACAGTGCAAGGAGAAAATGA+AGG | 0.599457 | 5_2:-65279867 | Msa0782340:CDS |
| AGCATGTATCAAGAAGCCTA+AGG | 0.607940 | 5_2:-65280735 | Msa0782340:CDS |
| CAGTGCAAGGAGAAAATGAA+GGG | 0.614413 | 5_2:-65279866 | Msa0782340:CDS |
| TGAGTACTAGCATCGGCAAG+TGG | 0.618274 | 5_2:+65282772 | None:intergenic |
| ATACTTATACAGATAAAGAA+GGG | 0.623826 | 5_2:-65279914 | Msa0782340:CDS |
| CCTAAGGAGAGTTTCGATTG+CGG | 0.639178 | 5_2:-65280719 | Msa0782340:CDS |
| CACATTTATCACATGACTAG+AGG | 0.641502 | 5_2:+65279610 | None:intergenic |
| GCCCTACTTCCAAGTATATG+CGG | 0.644753 | 5_2:+65279789 | None:intergenic |
| GCGTAGCTATTGGAAGTCAG+AGG | 0.654070 | 5_2:-65279829 | Msa0782340:CDS |
| ACATATGCCATTCCAGACAC+CGG | 0.654784 | 5_2:-65282562 | Msa0782340:CDS |
| TAGCTATTGGAAGTCAGAGG+AGG | 0.673118 | 5_2:-65279826 | Msa0782340:CDS |
| AAGACTTGTGAATCTAACCA+AGG | 0.681574 | 5_2:-65282514 | Msa0782340:intron |
| CTAGTCATGTGATAAATGTG+TGG | 0.693056 | 5_2:-65279607 | Msa0782340:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATATTTTTTAAATAAATA+GGG | + | chr5_2:65281194-65281213 | None:intergenic | 0.0% |
| !!! | AATATATTTTTTAAATAAAT+AGG | + | chr5_2:65281195-65281214 | None:intergenic | 0.0% |
| !! | TGAAAAAAAATAAAGTAAAT+TGG | + | chr5_2:65279888-65279907 | None:intergenic | 10.0% |
| !! | TTTGGATAAAATAAAAAAAA+CGG | - | chr5_2:65280963-65280982 | Msa0782340:intron | 10.0% |
| !!! | TTCTAAAAAATCTTATAAAT+AGG | + | chr5_2:65281101-65281120 | None:intergenic | 10.0% |
| !!! | CAAAAATTGTTTTATAAAAA+GGG | + | chr5_2:65281134-65281153 | None:intergenic | 10.0% |
| !!! | ACAAAAATTGTTTTATAAAA+AGG | + | chr5_2:65281135-65281154 | None:intergenic | 10.0% |
| !!! | ATTTGTTTTTCTTATATTAA+AGG | - | chr5_2:65281559-65281578 | Msa0782340:intron | 10.0% |
| !! | AATCCAACATTAATTAAATT+TGG | - | chr5_2:65279946-65279965 | Msa0782340:CDS | 15.0% |
| !!! | GGTAATTTTTTATTTACTTT+TGG | - | chr5_2:65280082-65280101 | Msa0782340:CDS | 15.0% |
| !!! | AATTAATTTCTATGTTTTGA+CGG | - | chr5_2:65280414-65280433 | Msa0782340:CDS | 15.0% |
| !! | TTATTTAAATTCACATGTAT+GGG | + | chr5_2:65280448-65280467 | None:intergenic | 15.0% |
| !! | TTTATTTAAATTCACATGTA+TGG | + | chr5_2:65280449-65280468 | None:intergenic | 15.0% |
| !! | GTAATATAAATTAGATTAGA+TGG | - | chr5_2:65280637-65280656 | Msa0782340:CDS | 15.0% |
| !!! | TCTCTAAAAAAAAAAAATCA+AGG | + | chr5_2:65280689-65280708 | None:intergenic | 15.0% |
| !!! | AAAGACAATTTTATTAACAA+AGG | - | chr5_2:65280737-65280756 | Msa0782340:CDS | 15.0% |
| !! | GATTGAAATATTCATTTATT+TGG | - | chr5_2:65281002-65281021 | Msa0782340:intron | 15.0% |
| !! | AAAAATCTTATAAATAGGAA+CGG | + | chr5_2:65281096-65281115 | None:intergenic | 15.0% |
| !! | TAAACAATAATTAATGTAGT+TGG | + | chr5_2:65281162-65281181 | None:intergenic | 15.0% |
| !!! | GATAATATGAGAATTTTTTT+TGG | + | chr5_2:65281990-65282009 | None:intergenic | 15.0% |
| !!! | TATTTTCAAAAATATCTACG+CGG | - | chr5_2:65280508-65280527 | Msa0782340:CDS | 20.0% |
| !! | TTCAAATTGAAATTTATTGC+AGG | - | chr5_2:65280615-65280634 | Msa0782340:CDS | 20.0% |
| !! | AATTCCTCAATTAAAACATT+TGG | - | chr5_2:65280945-65280964 | Msa0782340:intron | 20.0% |
| !!! | TTATCCAAATGTTTTAATTG+AGG | + | chr5_2:65280952-65280971 | None:intergenic | 20.0% |
| !! | ATAGAAAAATATCTGTCATT+AGG | - | chr5_2:65281037-65281056 | Msa0782340:intron | 20.0% |
| !! | TAGAAAAATATCTGTCATTA+GGG | - | chr5_2:65281038-65281057 | Msa0782340:intron | 20.0% |
| !!! | ATTTTACCAAAATGATCATA+TGG | - | chr5_2:65281339-65281358 | Msa0782340:intron | 20.0% |
| !!! | TGTTTTTCTTATATTAAAGG+TGG | - | chr5_2:65281562-65281581 | Msa0782340:intron | 20.0% |
| !! | TCTTTATCTTTATCTTTAAG+TGG | + | chr5_2:65281727-65281746 | None:intergenic | 20.0% |
| !!! | CTACATAAATACTTTTAAGA+TGG | + | chr5_2:65282155-65282174 | None:intergenic | 20.0% |
| !!! | CATCTTAAAAGTATTTATGT+AGG | - | chr5_2:65282153-65282172 | Msa0782340:intron | 20.0% |
| !! | AAAGTAGAAAAAGAATTAGA+TGG | - | chr5_2:65282300-65282319 | Msa0782340:intron | 20.0% |
| !! | AAGTAGAAAAAGAATTAGAT+GGG | - | chr5_2:65282301-65282320 | Msa0782340:intron | 20.0% |
| !!! | TGATATTTTCTTCAATTTCT+CGG | + | chr5_2:65282382-65282401 | None:intergenic | 20.0% |
| !! | TATACTTATACAGATAAAGA+AGG | - | chr5_2:65282456-65282475 | Msa0782340:intron | 20.0% |
| !! | ATACTTATACAGATAAAGAA+GGG | - | chr5_2:65282457-65282476 | Msa0782340:intron | 20.0% |
| !! | TTATAATAACAATGCTATGA+TGG | - | chr5_2:65282891-65282910 | Msa0782340:five_prime_UTR | 20.0% |
| !!! | TGTGAAAAAGAATGGTTTTA+GGG | + | chr5_2:65279540-65279559 | None:intergenic | 25.0% |
| !!! | AGTTTTAGTGTGAAAAAGAA+TGG | + | chr5_2:65279548-65279567 | None:intergenic | 25.0% |
| ! | AGCAATTATTTCAGATTCAA+TGG | + | chr5_2:65279723-65279742 | None:intergenic | 25.0% |
| ! | AAAGTAAATTGGATTTACCT+TGG | + | chr5_2:65279877-65279896 | None:intergenic | 25.0% |
| ! | CGACCAAATTTAATTAATGT+TGG | + | chr5_2:65279952-65279971 | None:intergenic | 25.0% |
| ! | AATCAAACCAATAACTAAGA+AGG | - | chr5_2:65280052-65280071 | Msa0782340:CDS | 25.0% |
| !! | GACAATTTTTGTGAAATGTA+TGG | - | chr5_2:65280156-65280175 | Msa0782340:CDS | 25.0% |
| !! | TTTTAGATGAAACTATTCCA+CGG | + | chr5_2:65280198-65280217 | None:intergenic | 25.0% |
| ! | AAATTAGATTAGATGGTACA+AGG | - | chr5_2:65280644-65280663 | Msa0782340:CDS | 25.0% |
| ! | AAAAATCAAGGTCATATAAC+TGG | + | chr5_2:65280677-65280696 | None:intergenic | 25.0% |
| ! | TAACGTCAAAAAAAAAGTCA+AGG | + | chr5_2:65280718-65280737 | None:intergenic | 25.0% |
| !! | CAATTTTATTAACAAAGGTC+TGG | - | chr5_2:65280742-65280761 | Msa0782340:CDS | 25.0% |
| ! | CAAATTGATGTTATAAGTCA+AGG | + | chr5_2:65280827-65280846 | None:intergenic | 25.0% |
| ! | CTTGACTTATAACATCAATT+TGG | - | chr5_2:65280825-65280844 | Msa0782340:intron | 25.0% |
| !!! | ATAAGGGTTTTTTTTTTGAG+AGG | + | chr5_2:65280911-65280930 | None:intergenic | 25.0% |
| !! | TTAAATAAATAGGGGTATGT+TGG | + | chr5_2:65281185-65281204 | None:intergenic | 25.0% |
| !!! | GATCATTTTGGTAAAATCAT+GGG | + | chr5_2:65281336-65281355 | None:intergenic | 25.0% |
| !!! | TGATCATTTTGGTAAAATCA+TGG | + | chr5_2:65281337-65281356 | None:intergenic | 25.0% |
| ! | ACAAACTTTCTTAATTCATG+TGG | - | chr5_2:65281376-65281395 | Msa0782340:intron | 25.0% |
| !! | AAGATACAATTTTCTCACTA+TGG | - | chr5_2:65281498-65281517 | Msa0782340:intron | 25.0% |
| !! | AACGAATTTTACACAAAGAA+TGG | + | chr5_2:65282125-65282144 | None:intergenic | 25.0% |
| !!! | AAGGTAATGATTATTGATTC+AGG | - | chr5_2:65282228-65282247 | Msa0782340:intron | 25.0% |
| !!! | AAAATGAAGGGTATCATAAA+AGG | - | chr5_2:65282517-65282536 | Msa0782340:CDS | 25.0% |
| !!! | AAATAATAGAGTGTCTTTTG+AGG | - | chr5_2:65282644-65282663 | Msa0782340:CDS | 25.0% |
| ! | TAAGCATAGTGAAGAATTAT+CGG | - | chr5_2:65282674-65282693 | Msa0782340:CDS | 25.0% |
| ! | ACACATATTCTTATTCTGAA+AGG | + | chr5_2:65282701-65282720 | None:intergenic | 25.0% |
| !! | GTATGTAGTTTTCAATAAGT+TGG | - | chr5_2:65282793-65282812 | Msa0782340:CDS | 25.0% |
| !!! | GTGAAAAAGAATGGTTTTAG+GGG | + | chr5_2:65279539-65279558 | None:intergenic | 30.0% |
| ! | GTGTGAAAAAGAATGGTTTT+AGG | + | chr5_2:65279541-65279560 | None:intergenic | 30.0% |
| ! | AATCACAACAACATCTCTTT+TGG | - | chr5_2:65279659-65279678 | Msa0782340:three_prime_UTR | 30.0% |
| AAATAATTGCTCAACAGTTC+AGG | - | chr5_2:65279732-65279751 | Msa0782340:CDS | 30.0% | |
| TTCAGGTATCTCATGAAATT+CGG | - | chr5_2:65279749-65279768 | Msa0782340:CDS | 30.0% | |
| !! | TTCGGTGTTAAAAATTACGA+TGG | - | chr5_2:65279767-65279786 | Msa0782340:CDS | 30.0% |
| AAGTCAACCTTCTTAGTTAT+TGG | + | chr5_2:65280062-65280081 | None:intergenic | 30.0% | |
| AATAACTAAGAAGGTTGACT+TGG | - | chr5_2:65280061-65280080 | Msa0782340:CDS | 30.0% | |
| TTTAGATGAAACTATTCCAC+GGG | + | chr5_2:65280197-65280216 | None:intergenic | 30.0% | |
| ! | AAACAACTGATTCATCCTAT+TGG | - | chr5_2:65280237-65280256 | Msa0782340:CDS | 30.0% |
| AGTGATTAATAAGCTCCAAT+AGG | + | chr5_2:65280255-65280274 | None:intergenic | 30.0% | |
| !!! | CGCTATAATGTCACTTTTAT+AGG | - | chr5_2:65280472-65280491 | Msa0782340:CDS | 30.0% |
| TGTTATAAGTCAAGGTCATA+TGG | + | chr5_2:65280819-65280838 | None:intergenic | 30.0% | |
| ! | CTTTAAGAGAGAGTTAGTTT+AGG | + | chr5_2:65281249-65281268 | None:intergenic | 30.0% |
| TACCAAAATGATCATATGGA+AGG | - | chr5_2:65281343-65281362 | Msa0782340:intron | 30.0% | |
| ! | ATCCTTCCATATGATCATTT+TGG | + | chr5_2:65281348-65281367 | None:intergenic | 30.0% |
| ACCGAAAGAACCATATATTT+AGG | - | chr5_2:65281403-65281422 | Msa0782340:intron | 30.0% | |
| CCCTAAATATATGGTTCTTT+CGG | + | chr5_2:65281407-65281426 | None:intergenic | 30.0% | |
| CCGAAAGAACCATATATTTA+GGG | - | chr5_2:65281404-65281423 | Msa0782340:intron | 30.0% | |
| AAGAACCATATATTTAGGGA+TGG | - | chr5_2:65281408-65281427 | Msa0782340:intron | 30.0% | |
| TGTGATGATTTGAAGGATAT+CGG | - | chr5_2:65281685-65281704 | Msa0782340:intron | 30.0% | |
| TTATCTTTAAGTGGACATTC+TGG | + | chr5_2:65281718-65281737 | None:intergenic | 30.0% | |
| AAATTCCTTCTGATTTAGCA+AGG | + | chr5_2:65281780-65281799 | None:intergenic | 30.0% | |
| GCTAAATCAGAAGGAATTTA+TGG | - | chr5_2:65281781-65281800 | Msa0782340:intron | 30.0% | |
| TTTGTAAACCAAAGATTAGC+TGG | + | chr5_2:65281808-65281827 | None:intergenic | 30.0% | |
| AAAGAAGGAACATTGAACAT+TGG | - | chr5_2:65281853-65281872 | Msa0782340:intron | 30.0% | |
| AAGAAGGAACATTGAACATT+GGG | - | chr5_2:65281854-65281873 | Msa0782340:intron | 30.0% | |
| AAAAGAATTAGATGGGAAAG+AGG | - | chr5_2:65282308-65282327 | Msa0782340:intron | 30.0% | |
| AAAGAATTAGATGGGAAAGA+GGG | - | chr5_2:65282309-65282328 | Msa0782340:intron | 30.0% | |
| !! | AGACAAAAATTGAGTTGAAG+AGG | - | chr5_2:65282415-65282434 | Msa0782340:intron | 30.0% |
| !! | GACAAAAATTGAGTTGAAGA+GGG | - | chr5_2:65282416-65282435 | Msa0782340:intron | 30.0% |
| TATATATGCTTAACAGTGCA+AGG | - | chr5_2:65282492-65282511 | Msa0782340:intron | 30.0% | |
| TGTATATATGCTATGCCATT+TGG | - | chr5_2:65282720-65282739 | Msa0782340:CDS | 30.0% | |
| TGTGATAAATGTGTGGTTAT+TGG | - | chr5_2:65282771-65282790 | Msa0782340:CDS | 30.0% | |
| TAAGTACTACAATGCATGCA+TGG | + | chr5_2:65279471-65279490 | None:intergenic | 35.0% | |
| !!! | TAGGTTTTGAGTACTAGCAT+CGG | + | chr5_2:65279609-65279628 | None:intergenic | 35.0% |
| GCTAGTACTCAAAACCTAAA+CGG | - | chr5_2:65279611-65279630 | Msa0782340:three_prime_UTR | 35.0% | |
| GGTTAAAGAAGATGCATCTA+GGG | + | chr5_2:65279702-65279721 | None:intergenic | 35.0% | |
| TGGTTAAAGAAGATGCATCT+AGG | + | chr5_2:65279703-65279722 | None:intergenic | 35.0% | |
| GGAATGGCATATGTATCTTT+GGG | + | chr5_2:65279803-65279822 | None:intergenic | 35.0% | |
| TGGAATGGCATATGTATCTT+TGG | + | chr5_2:65279804-65279823 | None:intergenic | 35.0% | |
| AAGACTTGTGAATCTAACCA+AGG | - | chr5_2:65279857-65279876 | Msa0782340:CDS | 35.0% | |
| AAGACTGCAGAAATACAAAG+CGG | - | chr5_2:65280781-65280800 | Msa0782340:CDS | 35.0% | |
| AACCATATATTTAGGGATGG+AGG | - | chr5_2:65281411-65281430 | Msa0782340:intron | 35.0% | |
| TACCTCCATCCCTAAATATA+TGG | + | chr5_2:65281416-65281435 | None:intergenic | 35.0% | |
| TCCAAGATGTGATGATTTGA+AGG | - | chr5_2:65281678-65281697 | Msa0782340:intron | 35.0% | |
| TCCTTCAAATCATCACATCT+TGG | + | chr5_2:65281682-65281701 | None:intergenic | 35.0% | |
| AAAGACCTTGCTAAATCAGA+AGG | - | chr5_2:65281772-65281791 | Msa0782340:intron | 35.0% | |
| TTTATGGTCCAGCTAATCTT+TGG | - | chr5_2:65281797-65281816 | Msa0782340:intron | 35.0% | |
| ! | ATCATCTTTCTCTTTTGTGC+TGG | + | chr5_2:65281893-65281912 | None:intergenic | 35.0% |
| !! | CTATGAGCAAGTTCACTTTT+GGG | - | chr5_2:65282049-65282068 | Msa0782340:intron | 35.0% |
| ! | GAATGGTCTTGATCTGTTAA+AGG | + | chr5_2:65282108-65282127 | None:intergenic | 35.0% |
| ACAAGTGTTACGAGAAAGAT+GGG | - | chr5_2:65282352-65282371 | Msa0782340:intron | 35.0% | |
| ! | ATGCTATGCCATTTGGTATA+AGG | - | chr5_2:65282727-65282746 | Msa0782340:CDS | 35.0% |
| ! | TATAGCAGCCTTATACCAAA+TGG | + | chr5_2:65282738-65282757 | None:intergenic | 35.0% |
| CACATTTATCACATGACTAG+AGG | + | chr5_2:65282764-65282783 | None:intergenic | 35.0% | |
| CTAGTCATGTGATAAATGTG+TGG | - | chr5_2:65282764-65282783 | Msa0782340:CDS | 35.0% | |
| !!! | GGTTTTAGGGGATGCATTTT+GGG | + | chr5_2:65279527-65279546 | None:intergenic | 40.0% |
| !!! | TGGTTTTAGGGGATGCATTT+TGG | + | chr5_2:65279528-65279547 | None:intergenic | 40.0% |
| GCTCGATGTTTAAACCGTTT+AGG | + | chr5_2:65279628-65279647 | None:intergenic | 40.0% | |
| ! | AGCGATCTCATATGGCTTTA+TGG | - | chr5_2:65279833-65279852 | Msa0782340:CDS | 40.0% |
| GAGTATAATAAGTACTCCCG+TGG | - | chr5_2:65280178-65280197 | Msa0782340:CDS | 40.0% | |
| TCTACGCGGCATGATTTAAT+CGG | - | chr5_2:65280522-65280541 | Msa0782340:CDS | 40.0% | |
| ! | GCTTTGTATTTCTGCAGTCT+TGG | + | chr5_2:65280782-65280801 | None:intergenic | 40.0% |
| TGTCTTAATCGTAAGTGCAC+AGG | + | chr5_2:65281458-65281477 | None:intergenic | 40.0% | |
| AGCATGTATCAAGAAGCCTA+AGG | - | chr5_2:65281636-65281655 | Msa0782340:intron | 40.0% | |
| GAAACCACATGCGATAAAGA+AGG | - | chr5_2:65281838-65281857 | Msa0782340:intron | 40.0% | |
| TGTTCCTTCTTTATCGCATG+TGG | + | chr5_2:65281845-65281864 | None:intergenic | 40.0% | |
| !! | TCTTTCTCTTTTGTGCTGGT+TGG | + | chr5_2:65281889-65281908 | None:intergenic | 40.0% |
| GATGAAGAACCAAAAAGCCA+AGG | - | chr5_2:65281910-65281929 | Msa0782340:intron | 40.0% | |
| TCGTTTCTGCGACAAAATTG+TGG | + | chr5_2:65282015-65282034 | None:intergenic | 40.0% | |
| ! | GCTATGAGCAAGTTCACTTT+TGG | - | chr5_2:65282048-65282067 | Msa0782340:intron | 40.0% |
| TGACGAGTGTCATCACTTAT+CGG | + | chr5_2:65282201-65282220 | None:intergenic | 40.0% | |
| CACAAGTGTTACGAGAAAGA+TGG | - | chr5_2:65282351-65282370 | Msa0782340:intron | 40.0% | |
| ACAGTGCAAGGAGAAAATGA+AGG | - | chr5_2:65282504-65282523 | Msa0782340:intron | 40.0% | |
| CAGTGCAAGGAGAAAATGAA+GGG | - | chr5_2:65282505-65282524 | Msa0782340:intron | 40.0% | |
| ATAAAAGGCTGCGTAGCTAT+TGG | - | chr5_2:65282532-65282551 | Msa0782340:CDS | 40.0% | |
| ACACTTACACCGCATATACT+TGG | - | chr5_2:65282573-65282592 | Msa0782340:CDS | 40.0% | |
| ACCGCATATACTTGGAAGTA+GGG | - | chr5_2:65282581-65282600 | Msa0782340:CDS | 40.0% | |
| GTAATGTGCATTAGTGTGCA+TGG | - | chr5_2:65282854-65282873 | Msa0782340:exon | 40.0% | |
| ACATATGCCATTCCAGACAC+CGG | - | chr5_2:65279809-65279828 | Msa0782340:CDS | 45.0% | |
| AAGCCATATGAGATCGCTTC+CGG | + | chr5_2:65279831-65279850 | None:intergenic | 45.0% | |
| CCTAAGGAGAGTTTCGATTG+CGG | - | chr5_2:65281652-65281671 | Msa0782340:intron | 45.0% | |
| !! | CCAACAACTCCTTGGCTTTT+TGG | + | chr5_2:65281922-65281941 | None:intergenic | 45.0% |
| CCAAAAAGCCAAGGAGTTGT+TGG | - | chr5_2:65281919-65281938 | Msa0782340:intron | 45.0% | |
| ATCCAAGTCCAACAACTCCT+TGG | + | chr5_2:65281930-65281949 | None:intergenic | 45.0% | |
| GAGTTGTTGGACTTGGATCT+GGG | - | chr5_2:65281932-65281951 | Msa0782340:intron | 45.0% | |
| TGACACTCGTCAAGCTCATA+AGG | - | chr5_2:65282209-65282228 | Msa0782340:intron | 45.0% | |
| GGGAAAGAGGGAGAAAAGAA+AGG | - | chr5_2:65282321-65282340 | Msa0782340:intron | 45.0% | |
| TAGCTATTGGAAGTCAGAGG+AGG | - | chr5_2:65282545-65282564 | Msa0782340:CDS | 45.0% | |
| CACCGCATATACTTGGAAGT+AGG | - | chr5_2:65282580-65282599 | Msa0782340:CDS | 45.0% | |
| GCCCTACTTCCAAGTATATG+CGG | + | chr5_2:65282585-65282604 | None:intergenic | 45.0% | |
| ! | TAGGGCACAGATGGATTTCT+TGG | - | chr5_2:65282599-65282618 | Msa0782340:CDS | 45.0% |
| !! | TTGAAAATTATTATAAATAA+GGG | + | chr5_2:65280927-65280946 | None:intergenic | 5.0% |
| !! | ATTGAAAATTATTATAAATA+AGG | + | chr5_2:65280928-65280947 | None:intergenic | 5.0% |
| !!! | TATATTTTTTAAATAAATAG+GGG | + | chr5_2:65281193-65281212 | None:intergenic | 5.0% |
| !! | ACTAGCATCGGCAAGTGGTT+GGG | + | chr5_2:65279597-65279616 | None:intergenic | 50.0% |
| !! | TACTAGCATCGGCAAGTGGT+TGG | + | chr5_2:65279598-65279617 | None:intergenic | 50.0% |
| !! | TGAGTACTAGCATCGGCAAG+TGG | + | chr5_2:65279602-65279621 | None:intergenic | 50.0% |
| ACACCGGAAGCGATCTCATA+TGG | - | chr5_2:65279825-65279844 | Msa0782340:CDS | 50.0% | |
| CCGCAATCGAAACTCTCCTT+AGG | + | chr5_2:65281655-65281674 | None:intergenic | 50.0% | |
| AGCCAAGGAGTTGTTGGACT+TGG | - | chr5_2:65281925-65281944 | Msa0782340:intron | 50.0% | |
| GGAGTTGTTGGACTTGGATC+TGG | - | chr5_2:65281931-65281950 | Msa0782340:intron | 50.0% | |
| !! | AGCAAGTTCACTTTTGGGCG+CGG | - | chr5_2:65282054-65282073 | Msa0782340:intron | 50.0% |
| GCGTAGCTATTGGAAGTCAG+AGG | - | chr5_2:65282542-65282561 | Msa0782340:CDS | 50.0% | |
| ACTTGGAAGTAGGGCACAGA+TGG | - | chr5_2:65282590-65282609 | Msa0782340:CDS | 50.0% | |
| ! | GGCACAGATGGATTTCTTGG+TGG | - | chr5_2:65282602-65282621 | Msa0782340:CDS | 50.0% |
| ATCGCTTCCGGTGTCTGGAA+TGG | + | chr5_2:65279819-65279838 | None:intergenic | 55.0% | |
| ATGAGATCGCTTCCGGTGTC+TGG | + | chr5_2:65279824-65279843 | None:intergenic | 55.0% | |
| !! | GTTCACTTTTGGGCGCGGTG+TGG | - | chr5_2:65282059-65282078 | Msa0782340:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 65279468 | 65282925 | 65279468 | ID=Msa0782340;Name=Msa0782340 |
| chr5_2 | mRNA | 65279468 | 65282925 | 65279468 | ID=Msa0782340-mRNA-1;Parent=Msa0782340;Name=Msa0782340-mRNA-1;_AED=0.00;_eAED=0.00;_QI=62|1|1|1|1|1|2|215|492 |
| chr5_2 | exon | 65279468 | 65280812 | 65279468 | ID=Msa0782340-mRNA-1:exon:19575;Parent=Msa0782340-mRNA-1 |
| chr5_2 | exon | 65282515 | 65282925 | 65282515 | ID=Msa0782340-mRNA-1:exon:19574;Parent=Msa0782340-mRNA-1 |
| chr5_2 | five_prime_UTR | 65282864 | 65282925 | 65282864 | ID=Msa0782340-mRNA-1:five_prime_utr;Parent=Msa0782340-mRNA-1 |
| chr5_2 | CDS | 65282515 | 65282863 | 65282515 | ID=Msa0782340-mRNA-1:cds;Parent=Msa0782340-mRNA-1 |
| chr5_2 | CDS | 65279683 | 65280812 | 65279683 | ID=Msa0782340-mRNA-1:cds;Parent=Msa0782340-mRNA-1 |
| chr5_2 | three_prime_UTR | 65279468 | 65279682 | 65279468 | ID=Msa0782340-mRNA-1:three_prime_utr;Parent=Msa0782340-mRNA-1 |
| Gene Sequence |
| Protein sequence |
