Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0819830 | XP_039685079.1 | 78.892 | 668 | 107 | 1 | 1 | 668 | 1 | 634 | 0.0 | 1068 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0819830 | A0A072TKR8 | 63.250 | 400 | 45 | 4 | 1 | 399 | 1 | 299 | 5.51e-157 | 464 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0027680 | Msa0819830 | 0.803055 | 4.184957e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0819830 | MtrunA17_Chr6g0474521 | 69.470 | 321 | 57 | 1 | 42 | 362 | 1 | 280 | 1.23e-152 | 442 |
| Msa0819830 | MtrunA17_Chr1g0162981 | 62.162 | 148 | 52 | 1 | 256 | 399 | 1 | 148 | 3.17e-54 | 183 |
| Msa0819830 | MtrunA17_Chr4g0074621 | 94.505 | 91 | 5 | 0 | 1 | 91 | 1 | 91 | 1.63e-53 | 178 |
| Msa0819830 | MtrunA17_Chr1g0175971 | 94.505 | 91 | 5 | 0 | 1 | 91 | 1 | 91 | 1.63e-53 | 178 |
| Msa0819830 | MtrunA17_Chr8g0337461 | 86.765 | 68 | 9 | 0 | 1 | 68 | 1 | 68 | 9.83e-34 | 123 |
| Msa0819830 | MtrunA17_Chr7g0265121 | 34.426 | 183 | 113 | 2 | 22 | 198 | 9 | 190 | 8.19e-33 | 125 |
| Msa0819830 | MtrunA17_Chr4g0074611 | 34.426 | 183 | 113 | 2 | 22 | 198 | 9 | 190 | 8.19e-33 | 125 |
| Msa0819830 | MtrunA17_Chr4g0012881 | 26.339 | 224 | 147 | 7 | 31 | 246 | 38 | 251 | 6.34e-21 | 97.1 |
| Msa0819830 | MtrunA17_Chr6g0470871 | 53.448 | 58 | 27 | 0 | 23 | 80 | 16 | 73 | 6.01e-14 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0819830 | AT4G15880.1 | 26.423 | 246 | 148 | 8 | 419 | 663 | 246 | 459 | 1.42e-12 | 70.9 |
Find 180 sgRNAs with CRISPR-Local
Find 418 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACGCTCTTAGTACCTATAAT+TGG | 0.159588 | 5_3:-56659663 | Msa0819830:CDS |
| GTTAATATCTACCAACTTAT+TGG | 0.179369 | 5_3:+56660128 | None:intergenic |
| GATACAGTTATACACATTTC+TGG | 0.200591 | 5_3:-56659568 | Msa0819830:CDS |
| CTAGACCTTTGTTTGGCTTT+AGG | 0.220943 | 5_3:-56659931 | Msa0819830:CDS |
| ATGCGTGGAAAACGCTTAAT+TGG | 0.267383 | 5_3:+56659399 | None:intergenic |
| TGAGGTAGTTGATGATTTAA+AGG | 0.268632 | 5_3:-56658143 | Msa0819830:CDS |
| AGATATGTTGGAATCTTCTT+TGG | 0.268674 | 5_3:-56657174 | Msa0819830:CDS |
| TGAGGGAAAACAAACGAAAA+AGG | 0.283246 | 5_3:-56660284 | Msa0819830:CDS |
| ACAAAGGTCTAGATGTTTAA+AGG | 0.286497 | 5_3:+56659942 | None:intergenic |
| TATATAGATAAAGGGGTATT+AGG | 0.287945 | 5_3:+56655200 | None:intergenic |
| AGAAATACATATATAGATAA+AGG | 0.290515 | 5_3:+56655191 | None:intergenic |
| TTAATATAACTGTGTGATTT+CGG | 0.290724 | 5_3:+56659718 | None:intergenic |
| GAGGATATTAAAAGCAAATA+AGG | 0.296971 | 5_3:-56659017 | Msa0819830:CDS |
| CGCTCTTAGTACCTATAATT+GGG | 0.312086 | 5_3:-56659662 | Msa0819830:CDS |
| ATTTACCAAAGCAACAAAAT+TGG | 0.312599 | 5_3:-56657136 | Msa0819830:intron |
| TTATCGAAGGTCATATATAA+AGG | 0.331004 | 5_3:-56655132 | Msa0819830:three_prime_UTR |
| GCTTTAGGTTTGCCTATTGT+AGG | 0.336005 | 5_3:-56659916 | Msa0819830:CDS |
| GCTTAATTGGACCACTGGTT+AGG | 0.336914 | 5_3:+56659412 | None:intergenic |
| CATTGGAGTTTACGTCCTTC+AGG | 0.346042 | 5_3:+56658115 | None:intergenic |
| CCTTAGGTTATTAATATTGC+TGG | 0.350091 | 5_3:-56658330 | Msa0819830:intron |
| GTATTTCTTTGAGGTACATT+TGG | 0.350276 | 5_3:-56655176 | Msa0819830:three_prime_UTR |
| AACAGCAACACCCCAATTAT+AGG | 0.367016 | 5_3:+56659651 | None:intergenic |
| TCTATATATGTATTTCTTTG+AGG | 0.369379 | 5_3:-56655185 | Msa0819830:three_prime_UTR |
| ATGTCCAGTGGTCTTCGAAC+TGG | 0.369613 | 5_3:+56657436 | None:intergenic |
| AACCATTCTCAAGTTGGTAT+TGG | 0.370824 | 5_3:-56659151 | Msa0819830:CDS |
| ATAAAGGGGTATTAGGATAA+AGG | 0.373190 | 5_3:+56655207 | None:intergenic |
| AATAAAGGAGCGAACAATAA+AGG | 0.374187 | 5_3:-56657197 | Msa0819830:CDS |
| AACACAAAGATTTGCTTTCC+CGG | 0.375365 | 5_3:-56659063 | Msa0819830:CDS |
| GAAATACATATATAGATAAA+GGG | 0.379203 | 5_3:+56655192 | None:intergenic |
| GTAGATGAGTTGCGTGTTGC+CGG | 0.380253 | 5_3:-56658486 | Msa0819830:CDS |
| TGGTTGCCCAGCCGTATTGC+AGG | 0.381669 | 5_3:-56659548 | Msa0819830:intron |
| GTTTACCGGAAACTAGTGAT+AGG | 0.386283 | 5_3:-56659888 | Msa0819830:CDS |
| CTACGTTGTCCCCTTCTTGA+AGG | 0.389579 | 5_3:+56659791 | None:intergenic |
| TGCAGTATCTAATACAAATC+TGG | 0.391438 | 5_3:+56655354 | None:intergenic |
| CTTCCTACTTCCATGCTACT+TGG | 0.397148 | 5_3:+56658968 | None:intergenic |
| TGATTAGTTGGTTGAGGACT+TGG | 0.400972 | 5_3:-56659221 | Msa0819830:intron |
| GTGGATATGAAGACCTATAT+AGG | 0.406234 | 5_3:-56660048 | Msa0819830:CDS |
| AAATGCCTCAAGGCAGCGTT+TGG | 0.407622 | 5_3:-56657352 | Msa0819830:CDS |
| GTAGTGGAATTGATGAATAA+AGG | 0.409455 | 5_3:-56657212 | Msa0819830:CDS |
| CTAACCCTATCACTAGTTTC+CGG | 0.415358 | 5_3:+56659883 | None:intergenic |
| CAGTGAAATTGTTTGTCGTC+TGG | 0.416799 | 5_3:-56655401 | Msa0819830:three_prime_UTR |
| AGTACCATTCATTCCTATAT+AGG | 0.420459 | 5_3:+56660035 | None:intergenic |
| TAAACATCTAGACCTTTGTT+TGG | 0.421249 | 5_3:-56659938 | Msa0819830:CDS |
| ACTTCCTCGCCTTCATGCAT+TGG | 0.432506 | 5_3:+56658454 | None:intergenic |
| GGAGTTGGATGATGATGATA+TGG | 0.432653 | 5_3:-56658717 | Msa0819830:CDS |
| TGATGATGATATGGCTGAAA+AGG | 0.433309 | 5_3:-56658708 | Msa0819830:CDS |
| CTTAATTGGACCACTGGTTA+GGG | 0.433873 | 5_3:+56659413 | None:intergenic |
| TTTATTCTGCACACATGAAA+AGG | 0.435390 | 5_3:-56658639 | Msa0819830:CDS |
| TAGGATTTAGAGTAGGCGTT+AGG | 0.437463 | 5_3:-56659972 | Msa0819830:CDS |
| AATGAATGGTACTTTATTGA+AGG | 0.438781 | 5_3:-56660025 | Msa0819830:CDS |
| ATCTACCAACTTATTGGTAC+GGG | 0.443644 | 5_3:+56660134 | None:intergenic |
| GGTATATGTTCTTAAGTACT+TGG | 0.444660 | 5_3:-56657010 | Msa0819830:CDS |
| TATGTTGGAATCTTCTTTGG+AGG | 0.445095 | 5_3:-56657171 | Msa0819830:CDS |
| TTCAATACCTGCAATACGGC+TGG | 0.445664 | 5_3:+56659541 | None:intergenic |
| TCTTCATATCCACAAGATAT+CGG | 0.446334 | 5_3:+56660058 | None:intergenic |
| AGCAAATAAGGTTGACGGTA+GGG | 0.449525 | 5_3:-56659005 | Msa0819830:CDS |
| TTGGAAGAAGAAAATGATGA+TGG | 0.450909 | 5_3:-56658809 | Msa0819830:CDS |
| TTCTTTGGAGGTTGTAGTGG+TGG | 0.452564 | 5_3:-56657159 | Msa0819830:CDS |
| TTTGCGCATCAGACAATGTT+CGG | 0.454164 | 5_3:+56660106 | None:intergenic |
| GGTAAACACTCTCCTACAAT+AGG | 0.455224 | 5_3:+56659904 | None:intergenic |
| TGAATTTCCGCTCAGTCCAT+TGG | 0.455335 | 5_3:+56658098 | None:intergenic |
| TTCTTAAGTACTTGGAGTTG+TGG | 0.459941 | 5_3:-56657002 | Msa0819830:CDS |
| AAGATTGATGCGGATAATGA+TGG | 0.460099 | 5_3:-56658914 | Msa0819830:CDS |
| TAGATGAGTTGCGTGTTGCC+GGG | 0.464352 | 5_3:-56658485 | Msa0819830:CDS |
| TTAATGTGATTAGTTGGTTG+AGG | 0.466558 | 5_3:-56659227 | Msa0819830:intron |
| AGGTGGGATGCAAGTAGCTT+AGG | 0.478297 | 5_3:-56659991 | Msa0819830:CDS |
| TCTTAAGTACTTGGAGTTGT+GGG | 0.482984 | 5_3:-56657001 | Msa0819830:CDS |
| TAATATTCGTTGGTGTATCA+TGG | 0.485490 | 5_3:-56655240 | Msa0819830:three_prime_UTR |
| CATGTTACGTGTTGGACCAT+AGG | 0.488808 | 5_3:-56657416 | Msa0819830:CDS |
| AATATTCAATACCTGCAATA+CGG | 0.491166 | 5_3:+56659537 | None:intergenic |
| TATTGTAGGAGAGTGTTTAC+CGG | 0.495009 | 5_3:-56659902 | Msa0819830:CDS |
| ATTCCACTACCCCTTTAAAA+CGG | 0.496889 | 5_3:+56657225 | None:intergenic |
| AGAAAATGATGGGATGAAGT+TGG | 0.497063 | 5_3:-56658864 | Msa0819830:CDS |
| TATCTACCAACTTATTGGTA+CGG | 0.500669 | 5_3:+56660133 | None:intergenic |
| TGAAGGAATTATTGCATAGG+TGG | 0.500937 | 5_3:-56660008 | Msa0819830:CDS |
| ACCAACTTGAGAATGGTTAA+CGG | 0.500987 | 5_3:+56659156 | None:intergenic |
| AACATGACCTCCATCCACTT+TGG | 0.501951 | 5_3:+56659365 | None:intergenic |
| AAGCTGAAGGTCCTTCAAGA+AGG | 0.502318 | 5_3:-56659802 | Msa0819830:CDS |
| ATCCTCAAGGATTGAAACCC+GGG | 0.502408 | 5_3:+56659045 | None:intergenic |
| TAAAGACAATGGGATGGAGT+TGG | 0.505100 | 5_3:-56658732 | Msa0819830:CDS |
| CTCCAATACCAACTTGAGAA+TGG | 0.505693 | 5_3:+56659149 | None:intergenic |
| CATACATTGTCCTCTTCCTA+TGG | 0.507544 | 5_3:+56657400 | None:intergenic |
| AGCATTACCAATGAATAGTC+GGG | 0.509033 | 5_3:+56656946 | None:intergenic |
| ATGGAAGAAGATAAAGACAA+TGG | 0.509362 | 5_3:-56658743 | Msa0819830:CDS |
| AAGCATTACCAATGAATAGT+CGG | 0.511109 | 5_3:+56656945 | None:intergenic |
| AAGACCTATATAGGAATGAA+TGG | 0.515117 | 5_3:-56660039 | Msa0819830:CDS |
| ATCTTCTTTGGAGGTTGTAG+TGG | 0.519883 | 5_3:-56657162 | Msa0819830:CDS |
| TGGAAGAAGATAAAGACAAT+GGG | 0.520727 | 5_3:-56658742 | Msa0819830:CDS |
| GCCGTTAACCATTCTCAAGT+TGG | 0.520859 | 5_3:-56659157 | Msa0819830:CDS |
| GAAGAGGACAATGTATGTGC+TGG | 0.521423 | 5_3:-56657394 | Msa0819830:CDS |
| AGGTTATTAATATTGCTGGC+AGG | 0.523648 | 5_3:-56658326 | Msa0819830:CDS |
| ACTTACAGGAGGATATCCTT+CGG | 0.524242 | 5_3:-56655429 | Msa0819830:intron |
| TTAAAAGCAAATAAGGTTGA+CGG | 0.525394 | 5_3:-56659010 | Msa0819830:CDS |
| AACTCCGTTCCGATATCTTG+TGG | 0.528157 | 5_3:-56660067 | Msa0819830:CDS |
| GGAAAAGCAGAAGAAAATGA+TGG | 0.528960 | 5_3:-56658875 | Msa0819830:CDS |
| GATGGGTTGAAAAGTGAGGC+GGG | 0.530008 | 5_3:-56658896 | Msa0819830:CDS |
| AATGCATGAAGGCGAGGAAG+TGG | 0.532769 | 5_3:-56658452 | Msa0819830:CDS |
| ATACCCGCGGATTTATTGAT+CGG | 0.534688 | 5_3:-56655328 | Msa0819830:three_prime_UTR |
| AAAACGCTTAATTGGACCAC+TGG | 0.534869 | 5_3:+56659407 | None:intergenic |
| GAGTATGCCCGACTATTCAT+TGG | 0.535075 | 5_3:-56656953 | Msa0819830:intron |
| CCACAACGCCTCAAGTGTCT+TGG | 0.536836 | 5_3:+56658054 | None:intergenic |
| AGCTGAAGGTCCTTCAAGAA+GGG | 0.538805 | 5_3:-56659801 | Msa0819830:CDS |
| GAACAATAAAGGAGATATGT+TGG | 0.549679 | 5_3:-56657186 | Msa0819830:CDS |
| CAATCCTTGAGGATGATATG+AGG | 0.550170 | 5_3:-56659036 | Msa0819830:CDS |
| TGTCCAGTGGTCTTCGAACT+GGG | 0.551007 | 5_3:+56657437 | None:intergenic |
| GGCATTTGAGTCTTTATCTG+TGG | 0.552622 | 5_3:+56660156 | None:intergenic |
| AGTAGCATGGAAGTAGGAAG+TGG | 0.553313 | 5_3:-56658965 | Msa0819830:CDS |
| ACACAAAGATTTGCTTTCCC+GGG | 0.556553 | 5_3:-56659062 | Msa0819830:CDS |
| CTTATATGGCTGAACATCAA+AGG | 0.559974 | 5_3:-56659096 | Msa0819830:CDS |
| TTTACCGGAAACTAGTGATA+GGG | 0.559975 | 5_3:-56659887 | Msa0819830:CDS |
| GAAGGAATTATTGCATAGGT+GGG | 0.560436 | 5_3:-56660007 | Msa0819830:CDS |
| TCAAGATATATATGCCTCGT+TGG | 0.560933 | 5_3:-56658078 | Msa0819830:CDS |
| TATTCCGATGCCAAGTAGCA+TGG | 0.561626 | 5_3:-56658978 | Msa0819830:CDS |
| TTCCCGGGTTTCAATCCTTG+AGG | 0.561883 | 5_3:-56659047 | Msa0819830:CDS |
| CATCCTCAAGGATTGAAACC+CGG | 0.563868 | 5_3:+56659044 | None:intergenic |
| AAGCAAATAAGGTTGACGGT+AGG | 0.567979 | 5_3:-56659006 | Msa0819830:CDS |
| AGAAAATGATGATGGGATGA+AGG | 0.570797 | 5_3:-56658801 | Msa0819830:CDS |
| AATGCCCCGTACCAATAAGT+TGG | 0.573173 | 5_3:-56660139 | Msa0819830:CDS |
| CAACCCAGTTCGAAGACCAC+TGG | 0.574509 | 5_3:-56657440 | Msa0819830:CDS |
| CATGATGAAGTTCGAAAACA+TGG | 0.575114 | 5_3:-56658294 | Msa0819830:CDS |
| AAATACATATATAGATAAAG+GGG | 0.575274 | 5_3:+56655193 | None:intergenic |
| ATATCCTCATATCATCCTCA+AGG | 0.575345 | 5_3:+56659032 | None:intergenic |
| TATGGCTGAACATCAAAGGT+TGG | 0.580692 | 5_3:-56659092 | Msa0819830:CDS |
| AGATGAGTTGCGTGTTGCCG+GGG | 0.584197 | 5_3:-56658484 | Msa0819830:CDS |
| TTGGTCCAATTGTTAATGCG+TGG | 0.585880 | 5_3:+56659384 | None:intergenic |
| ACTTCCATGCTACTTGGCAT+CGG | 0.586687 | 5_3:+56658974 | None:intergenic |
| AGAAGATAAAGACAATGGGA+TGG | 0.587623 | 5_3:-56658738 | Msa0819830:CDS |
| TATTGAAGGAATTATTGCAT+AGG | 0.587809 | 5_3:-56660011 | Msa0819830:CDS |
| CTGAAGGACGTAAACTCCAA+TGG | 0.587862 | 5_3:-56658114 | Msa0819830:CDS |
| AATTGAAAATCTTAGTAGTG+CGG | 0.588744 | 5_3:-56659617 | Msa0819830:CDS |
| GAAGGTTGATGATGAAGATG+TGG | 0.591676 | 5_3:-56658783 | Msa0819830:CDS |
| TAGTGTACATTCTAAGCTGA+AGG | 0.592478 | 5_3:-56659815 | Msa0819830:CDS |
| AACAATTGGACCAAAGTGGA+TGG | 0.592872 | 5_3:-56659375 | Msa0819830:CDS |
| GAAAAGCAGAAGAAAATGAT+GGG | 0.594943 | 5_3:-56658874 | Msa0819830:CDS |
| CCAAGACACTTGAGGCGTTG+TGG | 0.595183 | 5_3:-56658054 | Msa0819830:CDS |
| CAGTGGTCTTCGAACTGGGT+TGG | 0.595890 | 5_3:+56657441 | None:intergenic |
| ATGCATGAAGGCGAGGAAGT+GGG | 0.596800 | 5_3:-56658451 | Msa0819830:CDS |
| TAACCGATCAATAAATCCGC+GGG | 0.596912 | 5_3:+56655325 | None:intergenic |
| GATTTAAAGGCACATCCTGA+AGG | 0.597377 | 5_3:-56658130 | Msa0819830:CDS |
| AGTAGCTTAGGATTTAGAGT+AGG | 0.598830 | 5_3:-56659979 | Msa0819830:CDS |
| CATTAACAATTGGACCAAAG+TGG | 0.599981 | 5_3:-56659379 | Msa0819830:CDS |
| TCAATACCTGCAATACGGCT+GGG | 0.600754 | 5_3:+56659542 | None:intergenic |
| TGATGAAGATGTTGGTGAAG+AGG | 0.600999 | 5_3:-56658840 | Msa0819830:CDS |
| CCACTGGACATGTTACGTGT+TGG | 0.601741 | 5_3:-56657424 | Msa0819830:CDS |
| ACGTGTTGGACCATAGGAAG+AGG | 0.602868 | 5_3:-56657410 | Msa0819830:CDS |
| TAGAGTAGGCGTTAGGACTG+TGG | 0.605350 | 5_3:-56659965 | Msa0819830:CDS |
| ATGCCAAGTAGCATGGAAGT+AGG | 0.607349 | 5_3:-56658971 | Msa0819830:CDS |
| GGAAGTGGGTCAAAACATGT+AGG | 0.610645 | 5_3:-56658950 | Msa0819830:CDS |
| TGGGATGGTGAAGCAAAATG+AGG | 0.613129 | 5_3:-56656982 | Msa0819830:exon |
| TGGAAGAAGAAAATGATGAT+GGG | 0.616216 | 5_3:-56658808 | Msa0819830:CDS |
| GGTTCCAACACAACAAGACA+TGG | 0.619501 | 5_3:-56659200 | Msa0819830:CDS |
| TGATGGGTTGAAAAGTGAGG+CGG | 0.624829 | 5_3:-56658897 | Msa0819830:CDS |
| GCAGCGTTTGGATAATGCAA+TGG | 0.628794 | 5_3:-56657340 | Msa0819830:intron |
| GTCATTTGATTAGATATGGG+CGG | 0.632926 | 5_3:-56659448 | Msa0819830:intron |
| CAATTTCACTGCGAATCCGA+AGG | 0.633824 | 5_3:+56655413 | None:intergenic |
| GAACATTGTCTGATGCGCAA+AGG | 0.634154 | 5_3:-56660104 | Msa0819830:CDS |
| GCTGAAGGTCCTTCAAGAAG+GGG | 0.635073 | 5_3:-56659800 | Msa0819830:CDS |
| AAGTACTTGGAGTTGTGGGA+TGG | 0.635913 | 5_3:-56656997 | Msa0819830:CDS |
| AAGGTTGATGATGAAGATGT+GGG | 0.641554 | 5_3:-56658782 | Msa0819830:CDS |
| AAGTTGGATGATGAAGATGT+TGG | 0.645218 | 5_3:-56658848 | Msa0819830:CDS |
| ATTATCCAAACGCTGCCTTG+AGG | 0.647660 | 5_3:+56657347 | None:intergenic |
| ACAATGAAAGAAATGCCTCA+AGG | 0.654877 | 5_3:-56657362 | Msa0819830:CDS |
| CGGAAAATATAACACACACA+AGG | 0.655010 | 5_3:+56659738 | None:intergenic |
| AGATTGATGCGGATAATGAT+GGG | 0.662184 | 5_3:-56658913 | Msa0819830:CDS |
| TAATGATGGGTTGAAAAGTG+AGG | 0.663934 | 5_3:-56658900 | Msa0819830:CDS |
| AATTGGACCAAAGTGGATGG+AGG | 0.668982 | 5_3:-56659372 | Msa0819830:CDS |
| GCAAACCTAAAGCCAAACAA+AGG | 0.673782 | 5_3:+56659926 | None:intergenic |
| GTAGCATGGAAGTAGGAAGT+GGG | 0.674257 | 5_3:-56658964 | Msa0819830:CDS |
| TCGTTGGACCAAGACACTTG+AGG | 0.677045 | 5_3:-56658062 | Msa0819830:CDS |
| GAACATTTATCCCTAACCAG+TGG | 0.678694 | 5_3:-56659423 | Msa0819830:CDS |
| GCTCTTAGTACCTATAATTG+GGG | 0.679670 | 5_3:-56659661 | Msa0819830:CDS |
| TTAACCGATCAATAAATCCG+CGG | 0.698985 | 5_3:+56655324 | None:intergenic |
| ATATCCACAAGATATCGGAA+CGG | 0.702922 | 5_3:+56660063 | None:intergenic |
| GGGATGGTGAAGCAAAATGA+GGG | 0.703786 | 5_3:-56656981 | Msa0819830:exon |
| CCAACACGTAACATGTCCAG+TGG | 0.705795 | 5_3:+56657424 | None:intergenic |
| GTAAACTCCAATGGACTGAG+CGG | 0.711805 | 5_3:-56658105 | Msa0819830:CDS |
| TCAAGTGTCTTGGTCCAACG+AGG | 0.711931 | 5_3:+56658064 | None:intergenic |
| AGATACTGCAAAGATACCCG+CGG | 0.714457 | 5_3:-56655341 | Msa0819830:three_prime_UTR |
| TCTACCAACTTATTGGTACG+GGG | 0.719408 | 5_3:+56660135 | None:intergenic |
| TAAGTGTAGTAAGATTGATG+CGG | 0.726301 | 5_3:-56658924 | Msa0819830:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATCTAAATTAAAACAAAAA+AGG | + | chr5_3:56656971-56656990 | None:intergenic | 10.0% |
| !! | TATTTAATCGTAAAATAAAT+TGG | + | chr5_3:56658681-56658700 | None:intergenic | 10.0% |
| !!! | TTTTCATTTAAAAAAAATTG+AGG | + | chr5_3:56659178-56659197 | None:intergenic | 10.0% |
| !!! | TTTTATTTTTTTAAAGTGTT+TGG | - | chr5_3:56659661-56659680 | Msa0819830:CDS | 10.0% |
| !! | TACTAAATACTAATATATTA+TGG | - | chr5_3:56659877-56659896 | Msa0819830:CDS | 10.0% |
| !! | ACTAAATACTAATATATTAT+GGG | - | chr5_3:56659878-56659897 | Msa0819830:CDS | 10.0% |
| !! | ATTAAAACAAAAAAGGTTAA+CGG | + | chr5_3:56656964-56656983 | None:intergenic | 15.0% |
| !!! | AATTTTGTCAGATTATTTTT+CGG | - | chr5_3:56657111-56657130 | Msa0819830:intron | 15.0% |
| !!! | AACTCTTAAATAAATTGTTT+TGG | - | chr5_3:56658057-56658076 | Msa0819830:CDS | 15.0% |
| !! | CTAAATACTAATATATTATG+GGG | - | chr5_3:56659879-56659898 | Msa0819830:CDS | 15.0% |
| !! | AAATACATATATAGATAAAG+GGG | + | chr5_3:56660177-56660196 | None:intergenic | 15.0% |
| !! | GAAATACATATATAGATAAA+GGG | + | chr5_3:56660178-56660197 | None:intergenic | 15.0% |
| !! | AGAAATACATATATAGATAA+AGG | + | chr5_3:56660179-56660198 | None:intergenic | 15.0% |
| !! | TTAATATAACTGTGTGATTT+CGG | + | chr5_3:56655652-56655671 | None:intergenic | 20.0% |
| !!! | ATTTGTCATTTGATTAGATA+TGG | - | chr5_3:56655915-56655934 | Msa0819830:intron | 20.0% |
| !!! | TTTGTCATTTGATTAGATAT+GGG | - | chr5_3:56655916-56655935 | Msa0819830:intron | 20.0% |
| !! | GCATAAATAAAAGTAAGTAA+TGG | + | chr5_3:56657013-56657032 | None:intergenic | 20.0% |
| !! | TTATAATTAATGTTAGGCAT+GGG | + | chr5_3:56657196-56657215 | None:intergenic | 20.0% |
| !! | ATTATAATTAATGTTAGGCA+TGG | + | chr5_3:56657197-56657216 | None:intergenic | 20.0% |
| !! | CTGCAATTATAATTAATGTT+AGG | + | chr5_3:56657202-56657221 | None:intergenic | 20.0% |
| !! | TTAATTATAATTGCAGTTTG+AGG | - | chr5_3:56657206-56657225 | Msa0819830:CDS | 20.0% |
| !! | TCAAATATAGAGAATAATGT+TGG | - | chr5_3:56657613-56657632 | Msa0819830:intron | 20.0% |
| !! | TCATTGACATCAAATTTATT+AGG | + | chr5_3:56657825-56657844 | None:intergenic | 20.0% |
| !! | TTGATATATTACTTGTGTAT+AGG | - | chr5_3:56658285-56658304 | Msa0819830:CDS | 20.0% |
| !! | TGATATATTACTTGTGTATA+GGG | - | chr5_3:56658286-56658305 | Msa0819830:CDS | 20.0% |
| !! | AATAACTCACTAGAATATAT+GGG | - | chr5_3:56658821-56658840 | Msa0819830:CDS | 20.0% |
| !! | TTGTTTGAGGAAAATAAAAA+TGG | - | chr5_3:56658849-56658868 | Msa0819830:CDS | 20.0% |
| !! | TATTTGACAGGAATAAAAAT+GGG | + | chr5_3:56659007-56659026 | None:intergenic | 20.0% |
| !! | TTCAACAATCAATTTCATAT+AGG | + | chr5_3:56659103-56659122 | None:intergenic | 20.0% |
| !!! | CAAGAATTATTTTCTTTTGT+CGG | - | chr5_3:56659218-56659237 | Msa0819830:intron | 20.0% |
| !!! | TAATTCCTAGGAATTTTTTA+TGG | + | chr5_3:56659494-56659513 | None:intergenic | 20.0% |
| !!! | ATGATTTTATTTTCAAACGA+GGG | + | chr5_3:56659787-56659806 | None:intergenic | 20.0% |
| !! | TCGTTTGAAAATAAAATCAT+GGG | - | chr5_3:56659787-56659806 | Msa0819830:CDS | 20.0% |
| !! | TCTATATATGTATTTCTTTG+AGG | - | chr5_3:56660182-56660201 | Msa0819830:intron | 20.0% |
| !! | TTCGATAACAAAACAAAAAA+AGG | + | chr5_3:56660223-56660242 | None:intergenic | 20.0% |
| !!! | TTTTTTTGTTTTGTTATCGA+AGG | - | chr5_3:56660222-56660241 | Msa0819830:intron | 20.0% |
| ! | GTTAATATCTACCAACTTAT+TGG | + | chr5_3:56655242-56655261 | None:intergenic | 25.0% |
| ! | AATGAATGGTACTTTATTGA+AGG | - | chr5_3:56655342-56655361 | Msa0819830:three_prime_UTR | 25.0% |
| ! | TATTGAAGGAATTATTGCAT+AGG | - | chr5_3:56655356-56655375 | Msa0819830:three_prime_UTR | 25.0% |
| ! | AATTGAAAATCTTAGTAGTG+CGG | - | chr5_3:56655750-56655769 | Msa0819830:intron | 25.0% |
| ! | AATATTCAATACCTGCAATA+CGG | + | chr5_3:56655833-56655852 | None:intergenic | 25.0% |
| !!! | TGCAGGTATTGAATATTAAA+TGG | - | chr5_3:56655836-56655855 | Msa0819830:intron | 25.0% |
| !!! | GCAGGTATTGAATATTAAAT+GGG | - | chr5_3:56655837-56655856 | Msa0819830:intron | 25.0% |
| ! | TAGTATATTAACTCGGTAAA+TGG | - | chr5_3:56656070-56656089 | Msa0819830:intron | 25.0% |
| ! | AGTATATTAACTCGGTAAAT+GGG | - | chr5_3:56656071-56656090 | Msa0819830:intron | 25.0% |
| ! | ACCTATTTAATGTGATTAGT+TGG | - | chr5_3:56656134-56656153 | Msa0819830:intron | 25.0% |
| ! | ACCAACTAATCACATTAAAT+AGG | + | chr5_3:56656138-56656157 | None:intergenic | 25.0% |
| ! | GAGGATATTAAAAGCAAATA+AGG | - | chr5_3:56656350-56656369 | Msa0819830:intron | 25.0% |
| ! | TTAAAAGCAAATAAGGTTGA+CGG | - | chr5_3:56656357-56656376 | Msa0819830:intron | 25.0% |
| !!! | TTTTTTTAGTGTGTTATGTG+AGG | - | chr5_3:56656859-56656878 | Msa0819830:intron | 25.0% |
| !!! | TTTTATTTATGCATTGCCTT+AGG | - | chr5_3:56657021-56657040 | Msa0819830:CDS | 25.0% |
| ! | ATACTCTAATGAAAGAAAAC+AGG | + | chr5_3:56657494-56657513 | None:intergenic | 25.0% |
| ! | ATATTTGAATTGACAGAACA+AGG | - | chr5_3:56657538-56657557 | Msa0819830:intron | 25.0% |
| ! | AAACAAAACTCGCAAAATTA+GGG | + | chr5_3:56657783-56657802 | None:intergenic | 25.0% |
| ! | AAAACAAAACTCGCAAAATT+AGG | + | chr5_3:56657784-56657803 | None:intergenic | 25.0% |
| ! | ATTTACCAAAGCAACAAAAT+TGG | - | chr5_3:56658231-56658250 | Msa0819830:intron | 25.0% |
| !! | GCTTTCAGTTTTCAATATAT+TGG | + | chr5_3:56658612-56658631 | None:intergenic | 25.0% |
| ! | AATTAGAATTGTTAAGACTC+AGG | - | chr5_3:56658632-56658651 | Msa0819830:CDS | 25.0% |
| ! | TGAATGTTGTATCTATTGTT+TGG | - | chr5_3:56658719-56658738 | Msa0819830:CDS | 25.0% |
| ! | GAATGTTGTATCTATTGTTT+GGG | - | chr5_3:56658720-56658739 | Msa0819830:CDS | 25.0% |
| ! | CCCTTATAATTCCAAAAATA+CGG | + | chr5_3:56658766-56658785 | None:intergenic | 25.0% |
| !!! | CCGTATTTTTGGAATTATAA+GGG | - | chr5_3:56658763-56658782 | Msa0819830:CDS | 25.0% |
| !!! | CGTATTTTTGGAATTATAAG+GGG | - | chr5_3:56658764-56658783 | Msa0819830:CDS | 25.0% |
| !!! | ATGTTATGTTAATTTGTTCC+CGG | - | chr5_3:56658797-56658816 | Msa0819830:CDS | 25.0% |
| ! | GAATAACTCACTAGAATATA+TGG | - | chr5_3:56658820-56658839 | Msa0819830:CDS | 25.0% |
| ! | ATAACTCACTAGAATATATG+GGG | - | chr5_3:56658822-56658841 | Msa0819830:CDS | 25.0% |
| !!! | ACTGTCATTATTTTTTTCCT+GGG | + | chr5_3:56658958-56658977 | None:intergenic | 25.0% |
| !!! | AACTGTCATTATTTTTTTCC+TGG | + | chr5_3:56658959-56658978 | None:intergenic | 25.0% |
| ! | CTATTTGACAGGAATAAAAA+TGG | + | chr5_3:56659008-56659027 | None:intergenic | 25.0% |
| !! | CATTTTTATTCCTGTCAAAT+AGG | - | chr5_3:56659006-56659025 | Msa0819830:CDS | 25.0% |
| !! | ATTTTCACAGAAATTTACCT+GGG | + | chr5_3:56659048-56659067 | None:intergenic | 25.0% |
| ! | AACAATCAATTTCATATAGG+AGG | + | chr5_3:56659100-56659119 | None:intergenic | 25.0% |
| ! | CATGTGATATCAATATTTCT+TGG | - | chr5_3:56659128-56659147 | Msa0819830:CDS | 25.0% |
| !! | GATAATTTTCTTTGTTCCAT+TGG | - | chr5_3:56659242-56659261 | Msa0819830:intron | 25.0% |
| ! | TGTTCAATAGTATAATTCCT+AGG | + | chr5_3:56659506-56659525 | None:intergenic | 25.0% |
| !!! | ACTTTTTTCTACAATTTCCT+GGG | - | chr5_3:56659529-56659548 | Msa0819830:intron | 25.0% |
| ! | ATTCCAACATTTATATTCCT+GGG | - | chr5_3:56659558-56659577 | Msa0819830:CDS | 25.0% |
| ! | TAAAATTGAAACCCAAGAAT+AGG | + | chr5_3:56659646-56659665 | None:intergenic | 25.0% |
| !!! | CATGATTTTATTTTCAAACG+AGG | + | chr5_3:56659788-56659807 | None:intergenic | 25.0% |
| ! | CTCGTTTGAAAATAAAATCA+TGG | - | chr5_3:56659786-56659805 | Msa0819830:CDS | 25.0% |
| !!! | TATATAGATAAAGGGGTATT+AGG | + | chr5_3:56660170-56660189 | None:intergenic | 25.0% |
| ! | TTATCGAAGGTCATATATAA+AGG | - | chr5_3:56660235-56660254 | Msa0819830:intron | 25.0% |
| TATCTACCAACTTATTGGTA+CGG | + | chr5_3:56655237-56655256 | None:intergenic | 30.0% | |
| TCTTCATATCCACAAGATAT+CGG | + | chr5_3:56655312-56655331 | None:intergenic | 30.0% | |
| AAGACCTATATAGGAATGAA+TGG | - | chr5_3:56655328-56655347 | Msa0819830:three_prime_UTR | 30.0% | |
| AGTACCATTCATTCCTATAT+AGG | + | chr5_3:56655335-56655354 | None:intergenic | 30.0% | |
| ACAAAGGTCTAGATGTTTAA+AGG | + | chr5_3:56655428-56655447 | None:intergenic | 30.0% | |
| TAAACATCTAGACCTTTGTT+TGG | - | chr5_3:56655429-56655448 | Msa0819830:intron | 30.0% | |
| ! | CTGTATCATTCTTTTGTTGA+TGG | + | chr5_3:56655786-56655805 | None:intergenic | 30.0% |
| GATACAGTTATACACATTTC+TGG | - | chr5_3:56655799-56655818 | Msa0819830:intron | 30.0% | |
| !!! | AAACCTTTTTTCAAATGCGA+AGG | - | chr5_3:56656033-56656052 | Msa0819830:intron | 30.0% |
| TAACCTTCGCATTTGAAAAA+AGG | + | chr5_3:56656039-56656058 | None:intergenic | 30.0% | |
| TTGCCTGTAGTATATTAACT+CGG | - | chr5_3:56656063-56656082 | Msa0819830:intron | 30.0% | |
| TTACCGAGTTAATATACTAC+AGG | + | chr5_3:56656069-56656088 | None:intergenic | 30.0% | |
| ! | TTAATGTGATTAGTTGGTTG+AGG | - | chr5_3:56656140-56656159 | Msa0819830:intron | 30.0% |
| TAAGTGTAGTAAGATTGATG+CGG | - | chr5_3:56656443-56656462 | Msa0819830:intron | 30.0% | |
| GAAAAGCAGAAGAAAATGAT+GGG | - | chr5_3:56656493-56656512 | Msa0819830:intron | 30.0% | |
| TGGTGAAGAGGAAAAAAAAT+TGG | - | chr5_3:56656539-56656558 | Msa0819830:intron | 30.0% | |
| TTGGAAGAAGAAAATGATGA+TGG | - | chr5_3:56656558-56656577 | Msa0819830:intron | 30.0% | |
| TGGAAGAAGAAAATGATGAT+GGG | - | chr5_3:56656559-56656578 | Msa0819830:intron | 30.0% | |
| GGGTGAAGAAGAAAAAAAAA+TGG | - | chr5_3:56656605-56656624 | Msa0819830:intron | 30.0% | |
| ATGGAAGAAGATAAAGACAA+TGG | - | chr5_3:56656624-56656643 | Msa0819830:intron | 30.0% | |
| TGGAAGAAGATAAAGACAAT+GGG | - | chr5_3:56656625-56656644 | Msa0819830:intron | 30.0% | |
| TGGCTGAAAAGGAAAAAAAA+AGG | - | chr5_3:56656670-56656689 | Msa0819830:intron | 30.0% | |
| TTTATTCTGCACACATGAAA+AGG | - | chr5_3:56656728-56656747 | Msa0819830:intron | 30.0% | |
| !!! | AACTACATTTTTTCATGTCG+CGG | - | chr5_3:56656790-56656809 | Msa0819830:intron | 30.0% |
| CCAGCAATATTAATAACCTA+AGG | + | chr5_3:56657040-56657059 | None:intergenic | 30.0% | |
| CCTTAGGTTATTAATATTGC+TGG | - | chr5_3:56657037-56657056 | Msa0819830:intron | 30.0% | |
| !! | TGTCAGATTATTTTTCGGTA+CGG | - | chr5_3:56657116-56657135 | Msa0819830:intron | 30.0% |
| TAAAGGTTGAATACACATCA+CGG | + | chr5_3:56657169-56657188 | None:intergenic | 30.0% | |
| !! | TGAGGTAGTTGATGATTTAA+AGG | - | chr5_3:56657224-56657243 | Msa0819830:CDS | 30.0% |
| AGTCATCATTATGATGTTGT+AGG | - | chr5_3:56657370-56657389 | Msa0819830:CDS | 30.0% | |
| !!! | AGGAGTTTGCTGATTTATTT+TGG | - | chr5_3:56657558-56657577 | Msa0819830:intron | 30.0% |
| !!! | CATTGTGGTTTTGTCTATAT+GGG | - | chr5_3:56657672-56657691 | Msa0819830:intron | 30.0% |
| AACAAAACTCGCAAAATTAG+GGG | + | chr5_3:56657782-56657801 | None:intergenic | 30.0% | |
| ! | TTACAGAAAGTCCGTTTTAA+AGG | - | chr5_3:56658131-56658150 | Msa0819830:CDS | 30.0% |
| !! | TACAGAAAGTCCGTTTTAAA+GGG | - | chr5_3:56658132-56658151 | Msa0819830:CDS | 30.0% |
| ! | GTAGTGGAATTGATGAATAA+AGG | - | chr5_3:56658155-56658174 | Msa0819830:intron | 30.0% |
| AATAAAGGAGCGAACAATAA+AGG | - | chr5_3:56658170-56658189 | Msa0819830:intron | 30.0% | |
| GAACAATAAAGGAGATATGT+TGG | - | chr5_3:56658181-56658200 | Msa0819830:intron | 30.0% | |
| AGATATGTTGGAATCTTCTT+TGG | - | chr5_3:56658193-56658212 | Msa0819830:intron | 30.0% | |
| !! | ACTAACCAATTTTGTTGCTT+TGG | + | chr5_3:56658239-56658258 | None:intergenic | 30.0% |
| AAAGCAACAAAATTGGTTAG+TGG | - | chr5_3:56658238-56658257 | Msa0819830:intron | 30.0% | |
| ! | AAATTTTGCAGTCATGATTG+TGG | - | chr5_3:56658334-56658353 | Msa0819830:intron | 30.0% |
| ! | AATTTTGCAGTCATGATTGT+GGG | - | chr5_3:56658335-56658354 | Msa0819830:intron | 30.0% |
| GGTATATGTTCTTAAGTACT+TGG | - | chr5_3:56658357-56658376 | Msa0819830:intron | 30.0% | |
| AAGCATTACCAATGAATAGT+CGG | + | chr5_3:56658425-56658444 | None:intergenic | 30.0% | |
| CAATTAATCATCATTGACAG+CGG | - | chr5_3:56658526-56658545 | Msa0819830:intron | 30.0% | |
| GCAATTAGGCTGTATATTTA+GGG | + | chr5_3:56658580-56658599 | None:intergenic | 30.0% | |
| TGCAATTAGGCTGTATATTT+AGG | + | chr5_3:56658581-56658600 | None:intergenic | 30.0% | |
| !! | CTATTGTTTGGGTTTTTAAC+TGG | - | chr5_3:56658731-56658750 | Msa0819830:CDS | 30.0% |
| !!! | GCCGTATTTTTGGAATTATA+AGG | - | chr5_3:56658762-56658781 | Msa0819830:CDS | 30.0% |
| !! | TGTTATGTTAATTTGTTCCC+GGG | - | chr5_3:56658798-56658817 | Msa0819830:CDS | 30.0% |
| ATATTCTAGTGAGTTATTCC+CGG | + | chr5_3:56658819-56658838 | None:intergenic | 30.0% | |
| TAACTCACTAGAATATATGG+GGG | - | chr5_3:56658823-56658842 | Msa0819830:CDS | 30.0% | |
| GAATTACATATGCCATTGTT+TGG | - | chr5_3:56658892-56658911 | Msa0819830:CDS | 30.0% | |
| GGAACAAAAAAAATATGCCT+AGG | - | chr5_3:56658921-56658940 | Msa0819830:CDS | 30.0% | |
| AATAAAAATGGGCAAAACGT+GGG | + | chr5_3:56658996-56659015 | None:intergenic | 30.0% | |
| TTTATTCCTGTCAAATAGGA+TGG | - | chr5_3:56659010-56659029 | Msa0819830:CDS | 30.0% | |
| TTATTCCTGTCAAATAGGAT+GGG | - | chr5_3:56659011-56659030 | Msa0819830:CDS | 30.0% | |
| ! | GATTTTCACAGAAATTTACC+TGG | + | chr5_3:56659049-56659068 | None:intergenic | 30.0% |
| ATAGAAGTCCAAACTCAATT+GGG | + | chr5_3:56659275-56659294 | None:intergenic | 30.0% | |
| !!! | GACTTCTATGCATTGATTTT+GGG | - | chr5_3:56659286-56659305 | Msa0819830:intron | 30.0% |
| TCATGCCATAAAAAATTCCT+AGG | - | chr5_3:56659486-56659505 | Msa0819830:intron | 30.0% | |
| !!! | CACTTTTTTCTACAATTTCC+TGG | - | chr5_3:56659528-56659547 | Msa0819830:intron | 30.0% |
| GATTCCAACATTTATATTCC+TGG | - | chr5_3:56659557-56659576 | Msa0819830:CDS | 30.0% | |
| TTTCCCAGGAATATAAATGT+TGG | + | chr5_3:56659564-56659583 | None:intergenic | 30.0% | |
| GGGTTACAAAATTAATACCT+GGG | + | chr5_3:56659593-56659612 | None:intergenic | 30.0% | |
| AGGGTTACAAAATTAATACC+TGG | + | chr5_3:56659594-56659613 | None:intergenic | 30.0% | |
| AATAGGATTCCCAACATTTA+GGG | + | chr5_3:56659629-56659648 | None:intergenic | 30.0% | |
| TATATTTCATTCCGATCTCA+CGG | - | chr5_3:56659746-56659765 | Msa0819830:CDS | 30.0% | |
| !! | TTTATTTTCAAACGAGGGTT+GGG | + | chr5_3:56659782-56659801 | None:intergenic | 30.0% |
| !!! | TTTTATTTTCAAACGAGGGT+TGG | + | chr5_3:56659783-56659802 | None:intergenic | 30.0% |
| TGTGTAAGTTATTTGTTTCC+AGG | - | chr5_3:56659811-56659830 | Msa0819830:CDS | 30.0% | |
| TTATACACAGTAACACACAT+TGG | - | chr5_3:56659841-56659860 | Msa0819830:CDS | 30.0% | |
| TGTAAGTAAATGCAGTTAGT+TGG | + | chr5_3:56659925-56659944 | None:intergenic | 30.0% | |
| AACTAACTGCATTTACTTAC+AGG | - | chr5_3:56659924-56659943 | Msa0819830:CDS | 30.0% | |
| TGCAGTATCTAATACAAATC+TGG | + | chr5_3:56660016-56660035 | None:intergenic | 30.0% | |
| ! | GCGTTTTGTATAATATTCGT+TGG | - | chr5_3:56660117-56660136 | Msa0819830:CDS | 30.0% |
| TAATATTCGTTGGTGTATCA+TGG | - | chr5_3:56660127-56660146 | Msa0819830:CDS | 30.0% | |
| !! | ATAAAGGGGTATTAGGATAA+AGG | + | chr5_3:56660163-56660182 | None:intergenic | 30.0% |
| !! | GTATTTCTTTGAGGTACATT+TGG | - | chr5_3:56660191-56660210 | Msa0819830:intron | 30.0% |
| TGAGGGAAAACAAACGAAAA+AGG | - | chr5_3:56655083-56655102 | Msa0819830:three_prime_UTR | 35.0% | |
| GAGGGAAAACAAACGAAAAA+GGG | - | chr5_3:56655084-56655103 | Msa0819830:three_prime_UTR | 35.0% | |
| ATCTACCAACTTATTGGTAC+GGG | + | chr5_3:56655236-56655255 | None:intergenic | 35.0% | |
| ATATCCACAAGATATCGGAA+CGG | + | chr5_3:56655307-56655326 | None:intergenic | 35.0% | |
| GTGGATATGAAGACCTATAT+AGG | - | chr5_3:56655319-56655338 | Msa0819830:three_prime_UTR | 35.0% | |
| TGAAGGAATTATTGCATAGG+TGG | - | chr5_3:56655359-56655378 | Msa0819830:three_prime_UTR | 35.0% | |
| GAAGGAATTATTGCATAGGT+GGG | - | chr5_3:56655360-56655379 | Msa0819830:three_prime_UTR | 35.0% | |
| ! | AGTAGCTTAGGATTTAGAGT+AGG | - | chr5_3:56655388-56655407 | Msa0819830:three_prime_UTR | 35.0% |
| !! | TATTGTAGGAGAGTGTTTAC+CGG | - | chr5_3:56655465-56655484 | Msa0819830:intron | 35.0% |
| TTTACCGGAAACTAGTGATA+GGG | - | chr5_3:56655480-56655499 | Msa0819830:intron | 35.0% | |
| TAGTGTACATTCTAAGCTGA+AGG | - | chr5_3:56655552-56655571 | Msa0819830:intron | 35.0% | |
| CGGAAAATATAACACACACA+AGG | + | chr5_3:56655632-56655651 | None:intergenic | 35.0% | |
| ACGCTCTTAGTACCTATAAT+TGG | - | chr5_3:56655704-56655723 | Msa0819830:intron | 35.0% | |
| CGCTCTTAGTACCTATAATT+GGG | - | chr5_3:56655705-56655724 | Msa0819830:intron | 35.0% | |
| GCTCTTAGTACCTATAATTG+GGG | - | chr5_3:56655706-56655725 | Msa0819830:intron | 35.0% | |
| GTCATTTGATTAGATATGGG+CGG | - | chr5_3:56655919-56655938 | Msa0819830:intron | 35.0% | |
| ! | GTTTTCCACGCATTAACAAT+TGG | - | chr5_3:56655978-56655997 | Msa0819830:intron | 35.0% |
| CATTAACAATTGGACCAAAG+TGG | - | chr5_3:56655988-56656007 | Msa0819830:intron | 35.0% | |
| !! | TTTTCCATGTCTTGTTGTGT+TGG | + | chr5_3:56656174-56656193 | None:intergenic | 35.0% |
| ACCAACTTGAGAATGGTTAA+CGG | + | chr5_3:56656214-56656233 | None:intergenic | 35.0% | |
| !! | AACCATTCTCAAGTTGGTAT+TGG | - | chr5_3:56656216-56656235 | Msa0819830:intron | 35.0% |
| AAGCTCGCACATCAAAAAAA+GGG | + | chr5_3:56656254-56656273 | None:intergenic | 35.0% | |
| TAAGCTCGCACATCAAAAAA+AGG | + | chr5_3:56656255-56656274 | None:intergenic | 35.0% | |
| ! | TTTTGATGTGCGAGCTTATA+TGG | - | chr5_3:56656257-56656276 | Msa0819830:intron | 35.0% |
| CTTATATGGCTGAACATCAA+AGG | - | chr5_3:56656271-56656290 | Msa0819830:intron | 35.0% | |
| ! | AACACAAAGATTTGCTTTCC+CGG | - | chr5_3:56656304-56656323 | Msa0819830:intron | 35.0% |
| ATATCCTCATATCATCCTCA+AGG | + | chr5_3:56656338-56656357 | None:intergenic | 35.0% | |
| AAGATTGATGCGGATAATGA+TGG | - | chr5_3:56656453-56656472 | Msa0819830:intron | 35.0% | |
| AGATTGATGCGGATAATGAT+GGG | - | chr5_3:56656454-56656473 | Msa0819830:intron | 35.0% | |
| !! | TAATGATGGGTTGAAAAGTG+AGG | - | chr5_3:56656467-56656486 | Msa0819830:intron | 35.0% |
| GGAAAAGCAGAAGAAAATGA+TGG | - | chr5_3:56656492-56656511 | Msa0819830:intron | 35.0% | |
| ! | AGAAAATGATGGGATGAAGT+TGG | - | chr5_3:56656503-56656522 | Msa0819830:intron | 35.0% |
| AAGTTGGATGATGAAGATGT+TGG | - | chr5_3:56656519-56656538 | Msa0819830:intron | 35.0% | |
| !! | AGAAAATGATGATGGGATGA+AGG | - | chr5_3:56656566-56656585 | Msa0819830:intron | 35.0% |
| !! | AAGGTTGATGATGAAGATGT+GGG | - | chr5_3:56656585-56656604 | Msa0819830:intron | 35.0% |
| AGAAGATAAAGACAATGGGA+TGG | - | chr5_3:56656629-56656648 | Msa0819830:intron | 35.0% | |
| ! | TGATGATGATATGGCTGAAA+AGG | - | chr5_3:56656659-56656678 | Msa0819830:intron | 35.0% |
| !!! | ACTACATTTTTTCATGTCGC+GGG | - | chr5_3:56656791-56656810 | Msa0819830:intron | 35.0% |
| AGGTTATTAATATTGCTGGC+AGG | - | chr5_3:56657041-56657060 | Msa0819830:intron | 35.0% | |
| CATGATGAAGTTCGAAAACA+TGG | - | chr5_3:56657073-56657092 | Msa0819830:intron | 35.0% | |
| TGTTAGGCATGGGATAATAA+AGG | + | chr5_3:56657186-56657205 | None:intergenic | 35.0% | |
| TCAAGATATATATGCCTCGT+TGG | - | chr5_3:56657289-56657308 | Msa0819830:intron | 35.0% | |
| AGGTGTAGATGATTTCTGAT+TGG | - | chr5_3:56657390-56657409 | Msa0819830:CDS | 35.0% | |
| ! | TTGTCTAGAATGTTGATGAG+TGG | - | chr5_3:56657419-56657438 | Msa0819830:CDS | 35.0% |
| ! | TGTCTAGAATGTTGATGAGT+GGG | - | chr5_3:56657420-56657439 | Msa0819830:CDS | 35.0% |
| CTCTACCTAAAATTCCCTTT+AGG | - | chr5_3:56657637-56657656 | Msa0819830:intron | 35.0% | |
| !!! | GCATTGTGGTTTTGTCTATA+TGG | - | chr5_3:56657671-56657690 | Msa0819830:intron | 35.0% |
| GGGTTTGTGTTGTATTAGTT+CGG | - | chr5_3:56657692-56657711 | Msa0819830:intron | 35.0% | |
| TTTGTGTTGTATTAGTTCGG+TGG | - | chr5_3:56657695-56657714 | Msa0819830:intron | 35.0% | |
| TTGTGTTGTATTAGTTCGGT+GGG | - | chr5_3:56657696-56657715 | Msa0819830:intron | 35.0% | |
| ! | GTTTTGTGTGGTTTTTTGTG+CGG | - | chr5_3:56657725-56657744 | Msa0819830:intron | 35.0% |
| ! | TTTTGTGTGGTTTTTTGTGC+GGG | - | chr5_3:56657726-56657745 | Msa0819830:intron | 35.0% |
| GCAAAATTAGGGGTTACAAT+AGG | + | chr5_3:56657772-56657791 | None:intergenic | 35.0% | |
| !!! | CGAATTTGTTTTATGCAACG+TGG | - | chr5_3:56657867-56657886 | Msa0819830:intron | 35.0% |
| ACAATGAAAGAAATGCCTCA+AGG | - | chr5_3:56658005-56658024 | Msa0819830:intron | 35.0% | |
| !!! | ACAGAAAGTCCGTTTTAAAG+GGG | - | chr5_3:56658133-56658152 | Msa0819830:CDS | 35.0% |
| ! | ATTCCACTACCCCTTTAAAA+CGG | + | chr5_3:56658145-56658164 | None:intergenic | 35.0% |
| TATGTTGGAATCTTCTTTGG+AGG | - | chr5_3:56658196-56658215 | Msa0819830:intron | 35.0% | |
| ! | ATTTTGCAGTCATGATTGTG+GGG | - | chr5_3:56658336-56658355 | Msa0819830:intron | 35.0% |
| TTCTTAAGTACTTGGAGTTG+TGG | - | chr5_3:56658365-56658384 | Msa0819830:intron | 35.0% | |
| TCTTAAGTACTTGGAGTTGT+GGG | - | chr5_3:56658366-56658385 | Msa0819830:intron | 35.0% | |
| AGCATTACCAATGAATAGTC+GGG | + | chr5_3:56658424-56658443 | None:intergenic | 35.0% | |
| ATTGGATGTCTACTGCAATT+AGG | + | chr5_3:56658594-56658613 | None:intergenic | 35.0% | |
| TAGAATTGTTAAGACTCAGG+TGG | - | chr5_3:56658635-56658654 | Msa0819830:CDS | 35.0% | |
| !! | TTGTTTGGGTTTTTAACTGG+AGG | - | chr5_3:56658734-56658753 | Msa0819830:CDS | 35.0% |
| TATTCTAGTGAGTTATTCCC+GGG | + | chr5_3:56658818-56658837 | None:intergenic | 35.0% | |
| GGAAAATAAAAATGGTTCCC+AGG | - | chr5_3:56658857-56658876 | Msa0819830:CDS | 35.0% | |
| AATTCCAACCTTAGATTCCT+GGG | + | chr5_3:56658877-56658896 | None:intergenic | 35.0% | |
| TAATTCCAACCTTAGATTCC+TGG | + | chr5_3:56658878-56658897 | None:intergenic | 35.0% | |
| ATATGCCATTGTTTGGTAGA+TGG | - | chr5_3:56658899-56658918 | Msa0819830:CDS | 35.0% | |
| TATGCCATTGTTTGGTAGAT+GGG | - | chr5_3:56658900-56658919 | Msa0819830:CDS | 35.0% | |
| CCTGGGTATAATTTATTCCT+AGG | + | chr5_3:56658941-56658960 | None:intergenic | 35.0% | |
| CCTAGGAATAAATTATACCC+AGG | - | chr5_3:56658938-56658957 | Msa0819830:CDS | 35.0% | |
| GAATAAAAATGGGCAAAACG+TGG | + | chr5_3:56658997-56659016 | None:intergenic | 35.0% | |
| !! | AGGTGATAAGCATTGGTTAA+GGG | + | chr5_3:56659080-56659099 | None:intergenic | 35.0% |
| ATATAGGAGGTGATAAGCAT+TGG | + | chr5_3:56659087-56659106 | None:intergenic | 35.0% | |
| TCAATTGGGGAAAATTCCAA+TGG | + | chr5_3:56659261-56659280 | None:intergenic | 35.0% | |
| ! | GAATTTTCCCCAATTGAGTT+TGG | - | chr5_3:56659264-56659283 | Msa0819830:intron | 35.0% |
| TAGAAGTCCAAACTCAATTG+GGG | + | chr5_3:56659274-56659293 | None:intergenic | 35.0% | |
| CATAGAAGTCCAAACTCAAT+TGG | + | chr5_3:56659276-56659295 | None:intergenic | 35.0% | |
| !!! | GGACTTCTATGCATTGATTT+TGG | - | chr5_3:56659285-56659304 | Msa0819830:intron | 35.0% |
| !!! | ATGCATTGATTTTGGGATGA+TGG | - | chr5_3:56659293-56659312 | Msa0819830:intron | 35.0% |
| TTACACATCCCTTTCCATAT+TGG | + | chr5_3:56659319-56659338 | None:intergenic | 35.0% | |
| GTAATACAAGAAAGAGAACC+TGG | - | chr5_3:56659335-56659354 | Msa0819830:CDS | 35.0% | |
| ACAGGATTTAGAAATGTCGA+TGG | - | chr5_3:56659431-56659450 | Msa0819830:CDS | 35.0% | |
| !! | AAATGTCGATGGTATTGACA+GGG | - | chr5_3:56659442-56659461 | Msa0819830:intron | 35.0% |
| AATGTTGGAATCTTATTCCC+AGG | + | chr5_3:56659549-56659568 | None:intergenic | 35.0% | |
| GAATAGGATTCCCAACATTT+AGG | + | chr5_3:56659630-56659649 | None:intergenic | 35.0% | |
| AATGTTGGGAATCCTATTCT+TGG | - | chr5_3:56659631-56659650 | Msa0819830:CDS | 35.0% | |
| ATGTTGGGAATCCTATTCTT+GGG | - | chr5_3:56659632-56659651 | Msa0819830:CDS | 35.0% | |
| GTTAACATGTGTAACATTCC+CGG | - | chr5_3:56659683-56659702 | Msa0819830:CDS | 35.0% | |
| TTAACATGTGTAACATTCCC+GGG | - | chr5_3:56659684-56659703 | Msa0819830:CDS | 35.0% | |
| ATATTTCATTCCGATCTCAC+GGG | - | chr5_3:56659747-56659766 | Msa0819830:CDS | 35.0% | |
| ! | TTATTTTCAAACGAGGGTTG+GGG | + | chr5_3:56659781-56659800 | None:intergenic | 35.0% |
| ACTGTGTATAAAACACTTCC+TGG | + | chr5_3:56659832-56659851 | None:intergenic | 35.0% | |
| TAACTGCATTTACTTACAGG+AGG | - | chr5_3:56659927-56659946 | Msa0819830:CDS | 35.0% | |
| TTAACCGATCAATAAATCCG+CGG | + | chr5_3:56660046-56660065 | None:intergenic | 35.0% | |
| CGAAAAAGGGATTGTGTTGT+TGG | - | chr5_3:56655097-56655116 | Msa0819830:three_prime_UTR | 40.0% | |
| ATCTGTGGCTGCAAATTCAA+CGG | + | chr5_3:56655199-56655218 | None:intergenic | 40.0% | |
| GGCATTTGAGTCTTTATCTG+TGG | + | chr5_3:56655214-56655233 | None:intergenic | 40.0% | |
| TCTACCAACTTATTGGTACG+GGG | + | chr5_3:56655235-56655254 | None:intergenic | 40.0% | |
| TTTGCGCATCAGACAATGTT+CGG | + | chr5_3:56655264-56655283 | None:intergenic | 40.0% | |
| ! | TAGGATTTAGAGTAGGCGTT+AGG | - | chr5_3:56655395-56655414 | Msa0819830:three_prime_UTR | 40.0% |
| !! | CTAGACCTTTGTTTGGCTTT+AGG | - | chr5_3:56655436-56655455 | Msa0819830:intron | 40.0% |
| GCAAACCTAAAGCCAAACAA+AGG | + | chr5_3:56655444-56655463 | None:intergenic | 40.0% | |
| ! | GCTTTAGGTTTGCCTATTGT+AGG | - | chr5_3:56655451-56655470 | Msa0819830:intron | 40.0% |
| GGTAAACACTCTCCTACAAT+AGG | + | chr5_3:56655466-56655485 | None:intergenic | 40.0% | |
| GTTTACCGGAAACTAGTGAT+AGG | - | chr5_3:56655479-56655498 | Msa0819830:intron | 40.0% | |
| ! | CTAACCCTATCACTAGTTTC+CGG | + | chr5_3:56655487-56655506 | None:intergenic | 40.0% |
| AACAGCAACACCCCAATTAT+AGG | + | chr5_3:56655719-56655738 | None:intergenic | 40.0% | |
| GAACATTTATCCCTAACCAG+TGG | - | chr5_3:56655944-56655963 | Msa0819830:intron | 40.0% | |
| ! | CTTAATTGGACCACTGGTTA+GGG | + | chr5_3:56655957-56655976 | None:intergenic | 40.0% |
| AAAACGCTTAATTGGACCAC+TGG | + | chr5_3:56655963-56655982 | None:intergenic | 40.0% | |
| ATGCGTGGAAAACGCTTAAT+TGG | + | chr5_3:56655971-56655990 | None:intergenic | 40.0% | |
| TTGGTCCAATTGTTAATGCG+TGG | + | chr5_3:56655986-56656005 | None:intergenic | 40.0% | |
| AACAATTGGACCAAAGTGGA+TGG | - | chr5_3:56655992-56656011 | Msa0819830:intron | 40.0% | |
| ! | TGATTAGTTGGTTGAGGACT+TGG | - | chr5_3:56656146-56656165 | Msa0819830:intron | 40.0% |
| CTCCAATACCAACTTGAGAA+TGG | + | chr5_3:56656221-56656240 | None:intergenic | 40.0% | |
| TATGGCTGAACATCAAAGGT+TGG | - | chr5_3:56656275-56656294 | Msa0819830:intron | 40.0% | |
| ! | ACACAAAGATTTGCTTTCCC+GGG | - | chr5_3:56656305-56656324 | Msa0819830:intron | 40.0% |
| CAATCCTTGAGGATGATATG+AGG | - | chr5_3:56656331-56656350 | Msa0819830:intron | 40.0% | |
| AAGCAAATAAGGTTGACGGT+AGG | - | chr5_3:56656361-56656380 | Msa0819830:intron | 40.0% | |
| AGCAAATAAGGTTGACGGTA+GGG | - | chr5_3:56656362-56656381 | Msa0819830:intron | 40.0% | |
| ! | TGATGAAGATGTTGGTGAAG+AGG | - | chr5_3:56656527-56656546 | Msa0819830:intron | 40.0% |
| !! | GAAGGTTGATGATGAAGATG+TGG | - | chr5_3:56656584-56656603 | Msa0819830:intron | 40.0% |
| TAAAGACAATGGGATGGAGT+TGG | - | chr5_3:56656635-56656654 | Msa0819830:intron | 40.0% | |
| ! | GGAGTTGGATGATGATGATA+TGG | - | chr5_3:56656650-56656669 | Msa0819830:intron | 40.0% |
| ! | GGAGTTTTTCCAATGCATGA+AGG | - | chr5_3:56656904-56656923 | Msa0819830:intron | 40.0% |
| ! | GATTTAAAGGCACATCCTGA+AGG | - | chr5_3:56657237-56657256 | Msa0819830:intron | 40.0% |
| AAGAAAACAGGCAGTGATGA+AGG | + | chr5_3:56657482-56657501 | None:intergenic | 40.0% | |
| ! | CACTGCCTAAAGGGAATTTT+AGG | + | chr5_3:56657645-56657664 | None:intergenic | 40.0% |
| CTAAAATTCCCTTTAGGCAG+TGG | - | chr5_3:56657643-56657662 | Msa0819830:intron | 40.0% | |
| ! | TGTGTTGTATTAGTTCGGTG+GGG | - | chr5_3:56657697-56657716 | Msa0819830:intron | 40.0% |
| !!! | TTTGTGTGGTTTTTTGTGCG+GGG | - | chr5_3:56657727-56657746 | Msa0819830:intron | 40.0% |
| CATACATTGTCCTCTTCCTA+TGG | + | chr5_3:56657970-56657989 | None:intergenic | 40.0% | |
| ! | ATCTTCTTTGGAGGTTGTAG+TGG | - | chr5_3:56658205-56658224 | Msa0819830:intron | 40.0% |
| GCTGTATATTTAGGGAATGC+GGG | + | chr5_3:56658572-56658591 | None:intergenic | 40.0% | |
| GGCTGTATATTTAGGGAATG+CGG | + | chr5_3:56658573-56658592 | None:intergenic | 40.0% | |
| AAATGGTTCCCAGGAATCTA+AGG | - | chr5_3:56658866-56658885 | Msa0819830:CDS | 40.0% | |
| TGTTCCCATCTACCAAACAA+TGG | + | chr5_3:56658907-56658926 | None:intergenic | 40.0% | |
| ACTTTCCCATCCTATTTGAC+AGG | + | chr5_3:56659019-56659038 | None:intergenic | 40.0% | |
| !!! | GATGGGAAAGTTTTATTCCC+AGG | - | chr5_3:56659028-56659047 | Msa0819830:CDS | 40.0% |
| !! | GAGGTGATAAGCATTGGTTA+AGG | + | chr5_3:56659081-56659100 | None:intergenic | 40.0% |
| !!! | TTTTGGGATGATGGCCAATA+TGG | - | chr5_3:56659302-56659321 | Msa0819830:intron | 40.0% |
| ! | GATGATGGCCAATATGGAAA+GGG | - | chr5_3:56659308-56659327 | Msa0819830:intron | 40.0% |
| ! | AATCCTTCCTGAGTTCTAGT+CGG | + | chr5_3:56659391-56659410 | None:intergenic | 40.0% |
| CTCAGGAAGGATTAGAGTTT+AGG | - | chr5_3:56659398-56659417 | Msa0819830:CDS | 40.0% | |
| AGTTTAGGCTCTTCATCAAC+AGG | - | chr5_3:56659413-56659432 | Msa0819830:CDS | 40.0% | |
| !! | GAAATGTCGATGGTATTGAC+AGG | - | chr5_3:56659441-56659460 | Msa0819830:intron | 40.0% |
| !! | AATGTCGATGGTATTGACAG+GGG | - | chr5_3:56659443-56659462 | Msa0819830:intron | 40.0% |
| ! | TTTAGGGTGCGTTTGTTTGA+GGG | + | chr5_3:56659613-56659632 | None:intergenic | 40.0% |
| ! | ATTTAGGGTGCGTTTGTTTG+AGG | + | chr5_3:56659614-56659633 | None:intergenic | 40.0% |
| AACAAACGCACCCTAAATGT+TGG | - | chr5_3:56659616-56659635 | Msa0819830:CDS | 40.0% | |
| ACAAACGCACCCTAAATGTT+GGG | - | chr5_3:56659617-56659636 | Msa0819830:CDS | 40.0% | |
| GGAAAAAATTCCCGTGAGAT+CGG | + | chr5_3:56659760-56659779 | None:intergenic | 40.0% | |
| ACTTACAGGAGGATATCCTT+CGG | - | chr5_3:56659938-56659957 | Msa0819830:CDS | 40.0% | |
| CAGTGAAATTGTTTGTCGTC+TGG | - | chr5_3:56659966-56659985 | Msa0819830:CDS | 40.0% | |
| ATACCCGCGGATTTATTGAT+CGG | - | chr5_3:56660039-56660058 | Msa0819830:CDS | 40.0% | |
| TAACCGATCAATAAATCCGC+GGG | + | chr5_3:56660045-56660064 | None:intergenic | 40.0% | |
| AATGCCCCGTACCAATAAGT+TGG | - | chr5_3:56655228-56655247 | Msa0819830:three_prime_UTR | 45.0% | |
| GAACATTGTCTGATGCGCAA+AGG | - | chr5_3:56655263-56655282 | Msa0819830:three_prime_UTR | 45.0% | |
| AACTCCGTTCCGATATCTTG+TGG | - | chr5_3:56655300-56655319 | Msa0819830:three_prime_UTR | 45.0% | |
| AAGCTGAAGGTCCTTCAAGA+AGG | - | chr5_3:56655565-56655584 | Msa0819830:intron | 45.0% | |
| AGCTGAAGGTCCTTCAAGAA+GGG | - | chr5_3:56655566-56655585 | Msa0819830:intron | 45.0% | |
| TCAATACCTGCAATACGGCT+GGG | + | chr5_3:56655828-56655847 | None:intergenic | 45.0% | |
| TTCAATACCTGCAATACGGC+TGG | + | chr5_3:56655829-56655848 | None:intergenic | 45.0% | |
| ! | GCTTAATTGGACCACTGGTT+AGG | + | chr5_3:56655958-56655977 | None:intergenic | 45.0% |
| AATTGGACCAAAGTGGATGG+AGG | - | chr5_3:56655995-56656014 | Msa0819830:intron | 45.0% | |
| AACATGACCTCCATCCACTT+TGG | + | chr5_3:56656005-56656024 | None:intergenic | 45.0% | |
| GGTTCCAACACAACAAGACA+TGG | - | chr5_3:56656167-56656186 | Msa0819830:intron | 45.0% | |
| GCCGTTAACCATTCTCAAGT+TGG | - | chr5_3:56656210-56656229 | Msa0819830:intron | 45.0% | |
| ATCCTCAAGGATTGAAACCC+GGG | + | chr5_3:56656325-56656344 | None:intergenic | 45.0% | |
| CATCCTCAAGGATTGAAACC+CGG | + | chr5_3:56656326-56656345 | None:intergenic | 45.0% | |
| TATTCCGATGCCAAGTAGCA+TGG | - | chr5_3:56656389-56656408 | Msa0819830:intron | 45.0% | |
| ! | ACTTCCATGCTACTTGGCAT+CGG | + | chr5_3:56656396-56656415 | None:intergenic | 45.0% |
| ATGCCAAGTAGCATGGAAGT+AGG | - | chr5_3:56656396-56656415 | Msa0819830:intron | 45.0% | |
| CTTCCTACTTCCATGCTACT+TGG | + | chr5_3:56656402-56656421 | None:intergenic | 45.0% | |
| AGTAGCATGGAAGTAGGAAG+TGG | - | chr5_3:56656402-56656421 | Msa0819830:intron | 45.0% | |
| GTAGCATGGAAGTAGGAAGT+GGG | - | chr5_3:56656403-56656422 | Msa0819830:intron | 45.0% | |
| GGAAGTGGGTCAAAACATGT+AGG | - | chr5_3:56656417-56656436 | Msa0819830:intron | 45.0% | |
| !! | TGATGGGTTGAAAAGTGAGG+CGG | - | chr5_3:56656470-56656489 | Msa0819830:intron | 45.0% |
| CATGCATTGGAAAAACTCCC+CGG | + | chr5_3:56656903-56656922 | None:intergenic | 45.0% | |
| ! | TTTTCCAATGCATGAAGGCG+AGG | - | chr5_3:56656909-56656928 | Msa0819830:intron | 45.0% |
| CATTGGAGTTTACGTCCTTC+AGG | + | chr5_3:56657255-56657274 | None:intergenic | 45.0% | |
| CTGAAGGACGTAAACTCCAA+TGG | - | chr5_3:56657253-56657272 | Msa0819830:intron | 45.0% | |
| !! | GTAAACTCCAATGGACTGAG+CGG | - | chr5_3:56657262-56657281 | Msa0819830:intron | 45.0% |
| TGAATTTCCGCTCAGTCCAT+TGG | + | chr5_3:56657272-56657291 | None:intergenic | 45.0% | |
| ! | TTCCCTTTAGGCAGTGGATT+TGG | - | chr5_3:56657649-56657668 | Msa0819830:intron | 45.0% |
| TGCCAAATCCACTGCCTAAA+GGG | + | chr5_3:56657654-56657673 | None:intergenic | 45.0% | |
| ATGCCAAATCCACTGCCTAA+AGG | + | chr5_3:56657655-56657674 | None:intergenic | 45.0% | |
| ! | GTGTTGTATTAGTTCGGTGG+GGG | - | chr5_3:56657698-56657717 | Msa0819830:intron | 45.0% |
| ! | TGTTGTATTAGTTCGGTGGG+GGG | - | chr5_3:56657699-56657718 | Msa0819830:intron | 45.0% |
| GCGGGGTTTACGCTTATATT+TGG | - | chr5_3:56657744-56657763 | Msa0819830:intron | 45.0% | |
| CATGTTACGTGTTGGACCAT+AGG | - | chr5_3:56657951-56657970 | Msa0819830:intron | 45.0% | |
| GAAGAGGACAATGTATGTGC+TGG | - | chr5_3:56657973-56657992 | Msa0819830:intron | 45.0% | |
| ATTATCCAAACGCTGCCTTG+AGG | + | chr5_3:56658023-56658042 | None:intergenic | 45.0% | |
| GCAGCGTTTGGATAATGCAA+TGG | - | chr5_3:56658027-56658046 | Msa0819830:intron | 45.0% | |
| !!! | AGTCCGTTTTAAAGGGGTAG+TGG | - | chr5_3:56658139-56658158 | Msa0819830:CDS | 45.0% |
| ! | TTCTTTGGAGGTTGTAGTGG+TGG | - | chr5_3:56658208-56658227 | Msa0819830:intron | 45.0% |
| AAGTACTTGGAGTTGTGGGA+TGG | - | chr5_3:56658370-56658389 | Msa0819830:intron | 45.0% | |
| TGGGATGGTGAAGCAAAATG+AGG | - | chr5_3:56658385-56658404 | Msa0819830:intron | 45.0% | |
| GGGATGGTGAAGCAAAATGA+GGG | - | chr5_3:56658386-56658405 | Msa0819830:intron | 45.0% | |
| GAGTATGCCCGACTATTCAT+TGG | - | chr5_3:56658414-56658433 | Msa0819830:intron | 45.0% | |
| GTATATTTAGGGAATGCGGG+AGG | + | chr5_3:56658569-56658588 | None:intergenic | 45.0% | |
| !! | TATATGGGGGCGTTTGTTTG+AGG | - | chr5_3:56658836-56658855 | Msa0819830:CDS | 45.0% |
| !! | GCATTGGTTAAGGGCAGAAT+TGG | + | chr5_3:56659071-56659090 | None:intergenic | 45.0% |
| ! | GGATGATGGCCAATATGGAA+AGG | - | chr5_3:56659307-56659326 | Msa0819830:intron | 45.0% |
| ! | AGAACCTGGTTTGTCTAGCA+GGG | - | chr5_3:56659349-56659368 | Msa0819830:CDS | 45.0% |
| TAATCCCTGCTAGACAAACC+AGG | + | chr5_3:56659356-56659375 | None:intergenic | 45.0% | |
| ACACTCCTACAACTAAGTCC+CGG | + | chr5_3:56659705-56659724 | None:intergenic | 45.0% | |
| CAATTTCACTGCGAATCCGA+AGG | + | chr5_3:56659957-56659976 | None:intergenic | 45.0% | |
| AGATACTGCAAAGATACCCG+CGG | - | chr5_3:56660026-56660045 | Msa0819830:CDS | 45.0% | |
| !!! | TAAATTTTATCATTAAAATT+AGG | - | chr5_3:56657895-56657914 | Msa0819830:intron | 5.0% |
| !! | AAATTTAAAAATTTCAAATT+AGG | + | chr5_3:56658320-56658339 | None:intergenic | 5.0% |
| AGGTGGGATGCAAGTAGCTT+AGG | - | chr5_3:56655376-56655395 | Msa0819830:three_prime_UTR | 50.0% | |
| TAGAGTAGGCGTTAGGACTG+TGG | - | chr5_3:56655402-56655421 | Msa0819830:three_prime_UTR | 50.0% | |
| GCTGAAGGTCCTTCAAGAAG+GGG | - | chr5_3:56655567-56655586 | Msa0819830:intron | 50.0% | |
| CTACGTTGTCCCCTTCTTGA+AGG | + | chr5_3:56655579-56655598 | None:intergenic | 50.0% | |
| TTCCCGGGTTTCAATCCTTG+AGG | - | chr5_3:56656320-56656339 | Msa0819830:intron | 50.0% | |
| !! | GATGGGTTGAAAAGTGAGGC+GGG | - | chr5_3:56656471-56656490 | Msa0819830:intron | 50.0% |
| GTAGATGAGTTGCGTGTTGC+CGG | - | chr5_3:56656881-56656900 | Msa0819830:intron | 50.0% | |
| TAGATGAGTTGCGTGTTGCC+GGG | - | chr5_3:56656882-56656901 | Msa0819830:intron | 50.0% | |
| ACTTCCTCGCCTTCATGCAT+TGG | + | chr5_3:56656916-56656935 | None:intergenic | 50.0% | |
| AATGCATGAAGGCGAGGAAG+TGG | - | chr5_3:56656915-56656934 | Msa0819830:intron | 50.0% | |
| ATGCATGAAGGCGAGGAAGT+GGG | - | chr5_3:56656916-56656935 | Msa0819830:intron | 50.0% | |
| TCAAGTGTCTTGGTCCAACG+AGG | + | chr5_3:56657306-56657325 | None:intergenic | 50.0% | |
| TCGTTGGACCAAGACACTTG+AGG | - | chr5_3:56657305-56657324 | Msa0819830:intron | 50.0% | |
| ! | AGGCAGTGGATTTGGCATTG+TGG | - | chr5_3:56657657-56657676 | Msa0819830:intron | 50.0% |
| TATTAGGCAGAGTCGTCGCA+AGG | + | chr5_3:56657809-56657828 | None:intergenic | 50.0% | |
| TGTCCAGTGGTCTTCGAACT+GGG | + | chr5_3:56657933-56657952 | None:intergenic | 50.0% | |
| ATGTCCAGTGGTCTTCGAAC+TGG | + | chr5_3:56657934-56657953 | None:intergenic | 50.0% | |
| CCAACACGTAACATGTCCAG+TGG | + | chr5_3:56657946-56657965 | None:intergenic | 50.0% | |
| CCACTGGACATGTTACGTGT+TGG | - | chr5_3:56657943-56657962 | Msa0819830:intron | 50.0% | |
| ACGTGTTGGACCATAGGAAG+AGG | - | chr5_3:56657957-56657976 | Msa0819830:intron | 50.0% | |
| AAATGCCTCAAGGCAGCGTT+TGG | - | chr5_3:56658015-56658034 | Msa0819830:intron | 50.0% | |
| !! | GGAGGAGTGTGCCGTATTTT+TGG | - | chr5_3:56658752-56658771 | Msa0819830:CDS | 50.0% |
| ! | GGTTCCCAGGAATCTAAGGT+TGG | - | chr5_3:56658870-56658889 | Msa0819830:CDS | 50.0% |
| GCAAAACGTGGGTCAAACGT+GGG | + | chr5_3:56658985-56659004 | None:intergenic | 50.0% | |
| ! | GAGAACCTGGTTTGTCTAGC+AGG | - | chr5_3:56659348-56659367 | Msa0819830:CDS | 50.0% |
| ! | ATCCACACCGACTAGAACTC+AGG | - | chr5_3:56659381-56659400 | Msa0819830:CDS | 50.0% |
| ! | TTCCTGAGTTCTAGTCGGTG+TGG | + | chr5_3:56659386-56659405 | None:intergenic | 50.0% |
| ! | ACACCGACTAGAACTCAGGA+AGG | - | chr5_3:56659385-56659404 | Msa0819830:CDS | 50.0% |
| TTCCTGGGAAAGCTAATCCC+AGG | - | chr5_3:56659573-56659592 | Msa0819830:CDS | 50.0% | |
| !! | TACCTGGGATTAGCTTTCCC+AGG | + | chr5_3:56659578-56659597 | None:intergenic | 50.0% |
| CATTCCCGGGACTTAGTTGT+AGG | - | chr5_3:56659697-56659716 | Msa0819830:CDS | 50.0% | |
| CACTCCTACAACTAAGTCCC+GGG | + | chr5_3:56659704-56659723 | None:intergenic | 50.0% | |
| GGGACTTAGTTGTAGGAGTG+TGG | - | chr5_3:56659704-56659723 | Msa0819830:CDS | 50.0% | |
| AGATGAGTTGCGTGTTGCCG+GGG | - | chr5_3:56656883-56656902 | Msa0819830:intron | 55.0% | |
| CCACAACGCCTCAAGTGTCT+TGG | + | chr5_3:56657316-56657335 | None:intergenic | 55.0% | |
| !! | CCAAGACACTTGAGGCGTTG+TGG | - | chr5_3:56657313-56657332 | Msa0819830:intron | 55.0% |
| ! | GTATTAGTTCGGTGGGGGGT+TGG | - | chr5_3:56657703-56657722 | Msa0819830:intron | 55.0% |
| CAGTGGTCTTCGAACTGGGT+TGG | + | chr5_3:56657929-56657948 | None:intergenic | 55.0% | |
| CAACCCAGTTCGAAGACCAC+TGG | - | chr5_3:56657927-56657946 | Msa0819830:intron | 55.0% | |
| GGCAAAACGTGGGTCAAACG+TGG | + | chr5_3:56658986-56659005 | None:intergenic | 55.0% | |
| TGGTTGCCCAGCCGTATTGC+AGG | - | chr5_3:56655819-56655838 | Msa0819830:intron | 60.0% | |
| !!! | GGTGGGGGGTTGGTTTTGTG+TGG | - | chr5_3:56657713-56657732 | Msa0819830:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 56655082 | 56660307 | 56655082 | ID=Msa0819830;Name=Msa0819830 |
| chr5_3 | mRNA | 56655082 | 56660307 | 56655082 | ID=Msa0819830-mRNA-1;Parent=Msa0819830;Name=Msa0819830-mRNA-1;_AED=0.25;_eAED=0.25;_QI=0|0.8|0.63|1|0.9|0.81|11|392|668 |
| chr5_3 | exon | 56655082 | 56655443 | 56655082 | ID=Msa0819830-mRNA-1:exon:17143;Parent=Msa0819830-mRNA-1 |
| chr5_3 | exon | 56656954 | 56657044 | 56656954 | ID=Msa0819830-mRNA-1:exon:17142;Parent=Msa0819830-mRNA-1 |
| chr5_3 | exon | 56657137 | 56657252 | 56657137 | ID=Msa0819830-mRNA-1:exon:17141;Parent=Msa0819830-mRNA-1 |
| chr5_3 | exon | 56657341 | 56657472 | 56657341 | ID=Msa0819830-mRNA-1:exon:17140;Parent=Msa0819830-mRNA-1 |
| chr5_3 | exon | 56658042 | 56658167 | 56658042 | ID=Msa0819830-mRNA-1:exon:17139;Parent=Msa0819830-mRNA-1 |
| chr5_3 | exon | 56658257 | 56658346 | 56658257 | ID=Msa0819830-mRNA-1:exon:17138;Parent=Msa0819830-mRNA-1 |
| chr5_3 | exon | 56658440 | 56658521 | 56658440 | ID=Msa0819830-mRNA-1:exon:17137;Parent=Msa0819830-mRNA-1 |
| chr5_3 | exon | 56658629 | 56659236 | 56658629 | ID=Msa0819830-mRNA-1:exon:17136;Parent=Msa0819830-mRNA-1 |
| chr5_3 | exon | 56659335 | 56659457 | 56659335 | ID=Msa0819830-mRNA-1:exon:17135;Parent=Msa0819830-mRNA-1 |
| chr5_3 | exon | 56659549 | 56660178 | 56659549 | ID=Msa0819830-mRNA-1:exon:17134;Parent=Msa0819830-mRNA-1 |
| chr5_3 | exon | 56660269 | 56660307 | 56660269 | ID=Msa0819830-mRNA-1:exon:17133;Parent=Msa0819830-mRNA-1 |
| chr5_3 | CDS | 56660269 | 56660307 | 56660269 | ID=Msa0819830-mRNA-1:cds;Parent=Msa0819830-mRNA-1 |
| chr5_3 | CDS | 56659549 | 56660178 | 56659549 | ID=Msa0819830-mRNA-1:cds;Parent=Msa0819830-mRNA-1 |
| chr5_3 | CDS | 56659335 | 56659457 | 56659335 | ID=Msa0819830-mRNA-1:cds;Parent=Msa0819830-mRNA-1 |
| chr5_3 | CDS | 56658629 | 56659236 | 56658629 | ID=Msa0819830-mRNA-1:cds;Parent=Msa0819830-mRNA-1 |
| chr5_3 | CDS | 56658440 | 56658521 | 56658440 | ID=Msa0819830-mRNA-1:cds;Parent=Msa0819830-mRNA-1 |
| chr5_3 | CDS | 56658257 | 56658346 | 56658257 | ID=Msa0819830-mRNA-1:cds;Parent=Msa0819830-mRNA-1 |
| chr5_3 | CDS | 56658042 | 56658167 | 56658042 | ID=Msa0819830-mRNA-1:cds;Parent=Msa0819830-mRNA-1 |
| chr5_3 | CDS | 56657341 | 56657472 | 56657341 | ID=Msa0819830-mRNA-1:cds;Parent=Msa0819830-mRNA-1 |
| chr5_3 | CDS | 56657137 | 56657252 | 56657137 | ID=Msa0819830-mRNA-1:cds;Parent=Msa0819830-mRNA-1 |
| chr5_3 | CDS | 56656984 | 56657044 | 56656984 | ID=Msa0819830-mRNA-1:cds;Parent=Msa0819830-mRNA-1 |
| chr5_3 | three_prime_UTR | 56656954 | 56656983 | 56656954 | ID=Msa0819830-mRNA-1:three_prime_utr;Parent=Msa0819830-mRNA-1 |
| chr5_3 | three_prime_UTR | 56655082 | 56655443 | 56655082 | ID=Msa0819830-mRNA-1:three_prime_utr;Parent=Msa0819830-mRNA-1 |
| Gene Sequence |
| Protein sequence |
