Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0027680 | Msa0210730 | 0.824992 | 5.974282e-54 | -8.615850e-47 |
| Msa0027680 | Msa0342760 | 0.831920 | 1.269495e-55 | -8.615850e-47 |
| Msa0027680 | Msa0352050 | 0.849965 | 2.304289e-60 | -8.615850e-47 |
| Msa0027680 | Msa0819830 | 0.803055 | 4.184957e-49 | -8.615850e-47 |
| Msa0027680 | Msa0900920 | 0.802105 | 6.569244e-49 | -8.615850e-47 |
| Msa0027680 | Msa1025910 | 0.848907 | 4.542269e-60 | -8.615850e-47 |
| Msa0027680 | Msa1152170 | 0.951799 | 9.508408e-110 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0027680 | MtrunA17_Chr6g0474521 | 69.782 | 321 | 56 | 1 | 23 | 343 | 1 | 280 | 8.60e-153 | 444 |
| Msa0027680 | MtrunA17_Chr1g0162981 | 62.838 | 148 | 51 | 1 | 237 | 380 | 1 | 148 | 9.60e-55 | 184 |
| Msa0027680 | MtrunA17_Chr4g0074621 | 97.222 | 72 | 2 | 0 | 1 | 72 | 20 | 91 | 2.86e-42 | 148 |
| Msa0027680 | MtrunA17_Chr1g0175971 | 97.222 | 72 | 2 | 0 | 1 | 72 | 20 | 91 | 2.86e-42 | 148 |
| Msa0027680 | MtrunA17_Chr7g0265121 | 34.426 | 183 | 113 | 2 | 3 | 179 | 9 | 190 | 6.88e-33 | 125 |
| Msa0027680 | MtrunA17_Chr4g0074611 | 34.426 | 183 | 113 | 2 | 3 | 179 | 9 | 190 | 6.88e-33 | 125 |
| Msa0027680 | MtrunA17_Chr8g0337461 | 91.837 | 49 | 4 | 0 | 1 | 49 | 20 | 68 | 4.37e-24 | 95.9 |
| Msa0027680 | MtrunA17_Chr4g0012881 | 26.339 | 224 | 147 | 7 | 12 | 227 | 38 | 251 | 7.82e-21 | 97.1 |
| Msa0027680 | MtrunA17_Chr6g0470871 | 53.448 | 58 | 27 | 0 | 4 | 61 | 16 | 73 | 7.04e-14 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0027680 | AT4G15880.1 | 26.087 | 276 | 162 | 12 | 400 | 665 | 246 | 489 | 1.79e-11 | 67.4 |
| Msa0027680 | AT4G00690.1 | 24.434 | 221 | 134 | 9 | 458 | 665 | 141 | 341 | 2.58e-11 | 66.2 |
Find 183 sgRNAs with CRISPR-Local
Find 416 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACGCTCTTAGTACCTATAAT+TGG | 0.159588 | 1_1:+52188994 | Msa0027680:CDS |
| GTTAATATCTACCAACTTAT+TGG | 0.179369 | 1_1:-52188529 | None:intergenic |
| GATACAGTTATACACATTTC+TGG | 0.200591 | 1_1:+52189089 | Msa0027680:CDS |
| CTAGACCTTTGTTTGGCTTT+AGG | 0.220943 | 1_1:+52188726 | Msa0027680:CDS |
| ATGCGTGGAAAACGCTTAAT+TGG | 0.267383 | 1_1:-52189258 | None:intergenic |
| TGAGGTAGTTGATGATTTAA+AGG | 0.268632 | 1_1:+52190514 | Msa0027680:CDS |
| AGATATGTTGGAATCTTCTT+TGG | 0.268674 | 1_1:+52191483 | Msa0027680:CDS |
| ACAAAGGTCTAGATGTTTAA+AGG | 0.286497 | 1_1:-52188715 | None:intergenic |
| TATATAGATAAAGGGGTATT+AGG | 0.287945 | 1_1:-52193456 | None:intergenic |
| AGAAATACATATATAGATAA+AGG | 0.290515 | 1_1:-52193465 | None:intergenic |
| TTAATATAACTGTGTGATTT+CGG | 0.290724 | 1_1:-52188939 | None:intergenic |
| GAGGATATTAAAAGCAAATA+AGG | 0.296971 | 1_1:+52189640 | Msa0027680:CDS |
| TGTGGGATGGTGAAGCAAAA+TGG | 0.309075 | 1_1:+52191673 | Msa0027680:CDS |
| CAACGGTATTCATTCAATAA+TGG | 0.310324 | 1_1:-52188469 | None:intergenic |
| CGCTCTTAGTACCTATAATT+GGG | 0.312086 | 1_1:+52188995 | Msa0027680:CDS |
| ATTTACCAAAGCAACAAAAT+TGG | 0.312599 | 1_1:+52191521 | Msa0027680:CDS |
| TTATCGAAGGTCATATATAA+AGG | 0.331004 | 1_1:+52193524 | Msa0027680:three_prime_UTR |
| GCTTTAGGTTTGCCTATTGT+AGG | 0.336005 | 1_1:+52188741 | Msa0027680:CDS |
| GCTTAATTGGACCACTGGTT+AGG | 0.336914 | 1_1:-52189245 | None:intergenic |
| CATTGGAGTTTACGTCCTTC+AGG | 0.346042 | 1_1:-52190542 | None:intergenic |
| CCTTAGGTTATTAATATTGC+TGG | 0.350091 | 1_1:+52190327 | Msa0027680:intron |
| AACAGCAACACCCCAATTAT+AGG | 0.367016 | 1_1:-52189006 | None:intergenic |
| TCTATATATGTATTTCTTTG+AGG | 0.369379 | 1_1:+52193471 | Msa0027680:three_prime_UTR |
| ATGTCCAGTGGTCTTCGAAC+TGG | 0.369613 | 1_1:-52191221 | None:intergenic |
| AACCATTCTCAAGTTGGTAT+TGG | 0.370824 | 1_1:+52189506 | Msa0027680:CDS |
| ATAAAGGGGTATTAGGATAA+AGG | 0.373190 | 1_1:-52193449 | None:intergenic |
| AATAAAGGAGCGAACAATAA+AGG | 0.374187 | 1_1:+52191460 | Msa0027680:CDS |
| AACACAAAGATTTGCTTTCC+CGG | 0.375365 | 1_1:+52189594 | Msa0027680:CDS |
| GAAATACATATATAGATAAA+GGG | 0.379203 | 1_1:-52193464 | None:intergenic |
| GTAGATGAGTTGCGTGTTGC+CGG | 0.380253 | 1_1:+52190171 | Msa0027680:CDS |
| TGGTTGCCCAGCCGTATTGC+AGG | 0.381669 | 1_1:+52189109 | Msa0027680:CDS |
| GTTTACCGGAAACTAGTGAT+AGG | 0.386283 | 1_1:+52188769 | Msa0027680:CDS |
| CTACGTTGTCCCCTTCTTGA+AGG | 0.389579 | 1_1:-52188866 | None:intergenic |
| TGCAGTATCTAATACAAATC+TGG | 0.391438 | 1_1:-52193303 | None:intergenic |
| CTTCCTACTTCCATGCTACT+TGG | 0.397148 | 1_1:-52189689 | None:intergenic |
| TGATTAGTTGGTTGAGGACT+TGG | 0.400972 | 1_1:+52189436 | Msa0027680:intron |
| GTGGGATGGTGAAGCAAAAT+GGG | 0.404332 | 1_1:+52191674 | Msa0027680:CDS |
| GTGGATATGAAGACCTATAT+AGG | 0.406234 | 1_1:+52188609 | Msa0027680:CDS |
| AAATGCCTCAAGGCAGCGTT+TGG | 0.407622 | 1_1:+52191305 | Msa0027680:CDS |
| GTAGTGGAATTGATGAATAA+AGG | 0.409455 | 1_1:+52191445 | Msa0027680:CDS |
| TTTGTCTAACTTGATTGTGC+TGG | 0.411331 | 1_1:+52193363 | Msa0027680:three_prime_UTR |
| CTAACCCTATCACTAGTTTC+CGG | 0.415358 | 1_1:-52188774 | None:intergenic |
| CAGTGAAATTGTTTGTCGTC+TGG | 0.416799 | 1_1:+52193256 | Msa0027680:CDS |
| AGTACCATTCATTCCTATAT+AGG | 0.420459 | 1_1:-52188622 | None:intergenic |
| TAAACATCTAGACCTTTGTT+TGG | 0.421249 | 1_1:+52188719 | Msa0027680:CDS |
| ACTTCCTCGCCTTCATGCAT+TGG | 0.432506 | 1_1:-52190203 | None:intergenic |
| GGAGTTGGATGATGATGATA+TGG | 0.432653 | 1_1:+52189940 | Msa0027680:CDS |
| TGATGATGATATGGCTGAAA+AGG | 0.433309 | 1_1:+52189949 | Msa0027680:CDS |
| TTTATTCTGCACACATGAAA+AGG | 0.433361 | 1_1:+52190018 | Msa0027680:CDS |
| CTTAATTGGACCACTGGTTA+GGG | 0.433873 | 1_1:-52189244 | None:intergenic |
| TAGGATTTAGAGTAGGCGTT+AGG | 0.437463 | 1_1:+52188685 | Msa0027680:CDS |
| AATGAATGGTACTTTATTGA+AGG | 0.438781 | 1_1:+52188632 | Msa0027680:CDS |
| ATCTACCAACTTATTGGTAC+GGG | 0.443644 | 1_1:-52188523 | None:intergenic |
| GGTATATGTTCTTAAGTACT+TGG | 0.444660 | 1_1:+52191647 | Msa0027680:CDS |
| TATGTTGGAATCTTCTTTGG+AGG | 0.445095 | 1_1:+52191486 | Msa0027680:CDS |
| TTCAATACCTGCAATACGGC+TGG | 0.445664 | 1_1:-52189116 | None:intergenic |
| TCTTCATATCCACAAGATAT+CGG | 0.446334 | 1_1:-52188599 | None:intergenic |
| AGCAAATAAGGTTGACGGTA+GGG | 0.449525 | 1_1:+52189652 | Msa0027680:CDS |
| TTGGAAGAAGAAAATGATGA+TGG | 0.450909 | 1_1:+52189848 | Msa0027680:CDS |
| TTCTTTGGAGGTTGTAGTGG+TGG | 0.452564 | 1_1:+52191498 | Msa0027680:CDS |
| TTTGCGCATCAGACAATGTT+CGG | 0.454164 | 1_1:-52188551 | None:intergenic |
| GGTAAACACTCTCCTACAAT+AGG | 0.455224 | 1_1:-52188753 | None:intergenic |
| TGAATTTCCGCTCAGTCCAT+TGG | 0.455335 | 1_1:-52190559 | None:intergenic |
| TTCTTAAGTACTTGGAGTTG+TGG | 0.459941 | 1_1:+52191655 | Msa0027680:CDS |
| AAGATTGATGCGGATAATGA+TGG | 0.460099 | 1_1:+52189743 | Msa0027680:CDS |
| TAGATGAGTTGCGTGTTGCC+GGG | 0.464352 | 1_1:+52190172 | Msa0027680:CDS |
| TTAATGTGATTAGTTGGTTG+AGG | 0.466558 | 1_1:+52189430 | Msa0027680:intron |
| AGGTGGGATGCAAGTAGCTT+AGG | 0.478297 | 1_1:+52188666 | Msa0027680:CDS |
| TCTTAAGTACTTGGAGTTGT+GGG | 0.482984 | 1_1:+52191656 | Msa0027680:CDS |
| TAATATTCGTTGGTGTATCA+TGG | 0.485490 | 1_1:+52193416 | Msa0027680:three_prime_UTR |
| CATGTTACGTGTTGGACCAT+AGG | 0.488808 | 1_1:+52191241 | Msa0027680:CDS |
| AATATTCAATACCTGCAATA+CGG | 0.491166 | 1_1:-52189120 | None:intergenic |
| TATTGTAGGAGAGTGTTTAC+CGG | 0.495009 | 1_1:+52188755 | Msa0027680:CDS |
| AGAAAATGATGGGATGAAGT+TGG | 0.497063 | 1_1:+52189793 | Msa0027680:CDS |
| TATCTACCAACTTATTGGTA+CGG | 0.500669 | 1_1:-52188524 | None:intergenic |
| TGAAGGAATTATTGCATAGG+TGG | 0.500937 | 1_1:+52188649 | Msa0027680:CDS |
| ACCAACTTGAGAATGGTTAA+CGG | 0.500987 | 1_1:-52189501 | None:intergenic |
| AACATGACCTCCATCCACTT+TGG | 0.501951 | 1_1:-52189292 | None:intergenic |
| AAGCTGAAGGTCCTTCAAGA+AGG | 0.502318 | 1_1:+52188855 | Msa0027680:CDS |
| ATCCTCAAGGATTGAAACCC+GGG | 0.502408 | 1_1:-52189612 | None:intergenic |
| TAAAGACAATGGGATGGAGT+TGG | 0.505100 | 1_1:+52189925 | Msa0027680:CDS |
| CTCCAATACCAACTTGAGAA+TGG | 0.505693 | 1_1:-52189508 | None:intergenic |
| CATACATTGTCCTCTTCCTA+TGG | 0.507544 | 1_1:-52191257 | None:intergenic |
| AGCATTACCAATGAATAGTC+GGG | 0.509033 | 1_1:-52191711 | None:intergenic |
| ATGGAAGAAGATAAAGACAA+TGG | 0.509362 | 1_1:+52189914 | Msa0027680:CDS |
| AAGCATTACCAATGAATAGT+CGG | 0.511109 | 1_1:-52191712 | None:intergenic |
| AAGACCTATATAGGAATGAA+TGG | 0.515117 | 1_1:+52188618 | Msa0027680:CDS |
| ATCTTCTTTGGAGGTTGTAG+TGG | 0.519883 | 1_1:+52191495 | Msa0027680:CDS |
| TGGAAGAAGATAAAGACAAT+GGG | 0.520727 | 1_1:+52189915 | Msa0027680:CDS |
| GCCGTTAACCATTCTCAAGT+TGG | 0.520859 | 1_1:+52189500 | Msa0027680:CDS |
| GAAGAGGACAATGTATGTGC+TGG | 0.521423 | 1_1:+52191263 | Msa0027680:CDS |
| AGGTTATTAATATTGCTGGC+AGG | 0.523648 | 1_1:+52190331 | Msa0027680:intron |
| ACTTACAGGAGGATATCCTT+CGG | 0.524242 | 1_1:+52193228 | Msa0027680:intron |
| TTAAAAGCAAATAAGGTTGA+CGG | 0.525394 | 1_1:+52189647 | Msa0027680:CDS |
| AACTCCGTTCCGATATCTTG+TGG | 0.528157 | 1_1:+52188590 | Msa0027680:CDS |
| GGAAAAGCAGAAGAAAATGA+TGG | 0.528960 | 1_1:+52189782 | Msa0027680:CDS |
| GATGGGTTGAAAAGTGAGGC+GGG | 0.530008 | 1_1:+52189761 | Msa0027680:CDS |
| CCGCAACGCCTCAAGTGTCT+TGG | 0.532629 | 1_1:-52190603 | None:intergenic |
| AATGCATGAAGGCGAGGAAG+TGG | 0.532769 | 1_1:+52190205 | Msa0027680:CDS |
| ATACCCGCGGATTTATTGAT+CGG | 0.534688 | 1_1:+52193329 | Msa0027680:CDS |
| AAAACGCTTAATTGGACCAC+TGG | 0.534869 | 1_1:-52189250 | None:intergenic |
| GAGTATGCCCGACTATTCAT+TGG | 0.535075 | 1_1:+52191704 | Msa0027680:CDS |
| AGCTGAAGGTCCTTCAAGAA+GGG | 0.538805 | 1_1:+52188856 | Msa0027680:CDS |
| ATCTGTGGCTGCAAATTCAA+CGG | 0.548663 | 1_1:-52188486 | None:intergenic |
| GAACAATAAAGGAGATATGT+TGG | 0.549679 | 1_1:+52191471 | Msa0027680:CDS |
| CAATCCTTGAGGATGATATG+AGG | 0.550170 | 1_1:+52189621 | Msa0027680:CDS |
| CTTATATGGCTGAACATCAA+AGG | 0.550916 | 1_1:+52189561 | Msa0027680:CDS |
| TGTCCAGTGGTCTTCGAACT+GGG | 0.551007 | 1_1:-52191220 | None:intergenic |
| GGCATTTGAGTCTTTATCTG+TGG | 0.552622 | 1_1:-52188501 | None:intergenic |
| AGTAGCATGGAAGTAGGAAG+TGG | 0.553313 | 1_1:+52189692 | Msa0027680:CDS |
| ACACAAAGATTTGCTTTCCC+GGG | 0.556553 | 1_1:+52189595 | Msa0027680:CDS |
| TTTACCGGAAACTAGTGATA+GGG | 0.559975 | 1_1:+52188770 | Msa0027680:CDS |
| GAAGGAATTATTGCATAGGT+GGG | 0.560436 | 1_1:+52188650 | Msa0027680:CDS |
| TCAAGATATATATGCCTCGT+TGG | 0.560933 | 1_1:+52190579 | Msa0027680:CDS |
| TATTCCGATGCCAAGTAGCA+TGG | 0.561626 | 1_1:+52189679 | Msa0027680:CDS |
| TTCCCGGGTTTCAATCCTTG+AGG | 0.561883 | 1_1:+52189610 | Msa0027680:CDS |
| CATCCTCAAGGATTGAAACC+CGG | 0.563868 | 1_1:-52189613 | None:intergenic |
| AAGCAAATAAGGTTGACGGT+AGG | 0.567979 | 1_1:+52189651 | Msa0027680:CDS |
| AGAAAATGATGATGGGATGA+AGG | 0.570797 | 1_1:+52189856 | Msa0027680:CDS |
| ATTCCACTACCCCTTCAAAA+CGG | 0.572945 | 1_1:-52191432 | None:intergenic |
| AATGCCCCGTACCAATAAGT+TGG | 0.573173 | 1_1:+52188518 | Msa0027680:exon |
| CAACCCAGTTCGAAGACCAC+TGG | 0.574509 | 1_1:+52191217 | Msa0027680:CDS |
| CATGATGAAGTTCGAAAACA+TGG | 0.575114 | 1_1:+52190363 | Msa0027680:CDS |
| AAATACATATATAGATAAAG+GGG | 0.575274 | 1_1:-52193463 | None:intergenic |
| ATATCCTCATATCATCCTCA+AGG | 0.575345 | 1_1:-52189625 | None:intergenic |
| TAACCGATCAATAAATCCGC+GGG | 0.579519 | 1_1:-52193332 | None:intergenic |
| TATGGCTGAACATCAAAGGT+TGG | 0.580692 | 1_1:+52189565 | Msa0027680:CDS |
| AGATGAGTTGCGTGTTGCCG+GGG | 0.584197 | 1_1:+52190173 | Msa0027680:CDS |
| TTGGTCCAATTGTTAATGCG+TGG | 0.585880 | 1_1:-52189273 | None:intergenic |
| ACTTCCATGCTACTTGGCAT+CGG | 0.586687 | 1_1:-52189683 | None:intergenic |
| AGAAGATAAAGACAATGGGA+TGG | 0.587623 | 1_1:+52189919 | Msa0027680:CDS |
| TATTGAAGGAATTATTGCAT+AGG | 0.587809 | 1_1:+52188646 | Msa0027680:CDS |
| CTGAAGGACGTAAACTCCAA+TGG | 0.587862 | 1_1:+52190543 | Msa0027680:CDS |
| AATTGAAAATCTTAGTAGTG+CGG | 0.588744 | 1_1:+52189040 | Msa0027680:CDS |
| GAAGGTTGATGATGAAGATG+TGG | 0.591676 | 1_1:+52189874 | Msa0027680:CDS |
| TAGTGTACATTCTAAGCTGA+AGG | 0.592478 | 1_1:+52188842 | Msa0027680:CDS |
| AACAATTGGACCAAAGTGGA+TGG | 0.592872 | 1_1:+52189282 | Msa0027680:CDS |
| GAAAAGCAGAAGAAAATGAT+GGG | 0.594943 | 1_1:+52189783 | Msa0027680:CDS |
| CAGTGGTCTTCGAACTGGGT+TGG | 0.595890 | 1_1:-52191216 | None:intergenic |
| ATGCATGAAGGCGAGGAAGT+GGG | 0.596800 | 1_1:+52190206 | Msa0027680:CDS |
| GATTTAAAGGCACATCCTGA+AGG | 0.597377 | 1_1:+52190527 | Msa0027680:CDS |
| AGTAGCTTAGGATTTAGAGT+AGG | 0.598830 | 1_1:+52188678 | Msa0027680:CDS |
| CATTAACAATTGGACCAAAG+TGG | 0.599981 | 1_1:+52189278 | Msa0027680:CDS |
| TCAATACCTGCAATACGGCT+GGG | 0.600754 | 1_1:-52189115 | None:intergenic |
| TGATGAAGATGTTGGTGAAG+AGG | 0.600999 | 1_1:+52189817 | Msa0027680:CDS |
| CCACTGGACATGTTACGTGT+TGG | 0.601741 | 1_1:+52191233 | Msa0027680:CDS |
| ACGTGTTGGACCATAGGAAG+AGG | 0.602868 | 1_1:+52191247 | Msa0027680:CDS |
| TAGAGTAGGCGTTAGGACTG+TGG | 0.605350 | 1_1:+52188692 | Msa0027680:CDS |
| ATGCCAAGTAGCATGGAAGT+AGG | 0.607349 | 1_1:+52189686 | Msa0027680:CDS |
| GGAAGTGGGTCAAAACATGT+AGG | 0.610645 | 1_1:+52189707 | Msa0027680:CDS |
| TGGAAGAAGAAAATGATGAT+GGG | 0.616216 | 1_1:+52189849 | Msa0027680:CDS |
| CCAAGACACTTGAGGCGTTG+CGG | 0.618422 | 1_1:+52190603 | Msa0027680:CDS |
| GGTTCCAACACAACAAGACA+TGG | 0.619501 | 1_1:+52189457 | Msa0027680:CDS |
| TGGGATGGTGAAGCAAAATG+GGG | 0.623459 | 1_1:+52191675 | Msa0027680:CDS |
| TGATGGGTTGAAAAGTGAGG+CGG | 0.624829 | 1_1:+52189760 | Msa0027680:CDS |
| GCAGCGTTTGGATAATGCAA+TGG | 0.628794 | 1_1:+52191317 | Msa0027680:CDS |
| GTCATTTGATTAGATATGGG+CGG | 0.632926 | 1_1:+52189209 | Msa0027680:intron |
| CAATTTCACTGCGAATCCGA+AGG | 0.633824 | 1_1:-52193244 | None:intergenic |
| GAACATTGTCTGATGCGCAA+AGG | 0.634154 | 1_1:+52188553 | Msa0027680:CDS |
| GCTGAAGGTCCTTCAAGAAG+GGG | 0.635073 | 1_1:+52188857 | Msa0027680:CDS |
| AAGTACTTGGAGTTGTGGGA+TGG | 0.635913 | 1_1:+52191660 | Msa0027680:CDS |
| AAGGTTGATGATGAAGATGT+GGG | 0.641554 | 1_1:+52189875 | Msa0027680:CDS |
| AAGTTGGATGATGAAGATGT+TGG | 0.645218 | 1_1:+52189809 | Msa0027680:CDS |
| ATTATCCAAACGCTGCCTTG+AGG | 0.647660 | 1_1:-52191310 | None:intergenic |
| CGGAAAATATAACACACACA+AGG | 0.655010 | 1_1:-52188919 | None:intergenic |
| ACAGTGAAAGAAATGCCTCA+AGG | 0.655287 | 1_1:+52191295 | Msa0027680:CDS |
| AGATTGATGCGGATAATGAT+GGG | 0.662184 | 1_1:+52189744 | Msa0027680:CDS |
| TAATGATGGGTTGAAAAGTG+AGG | 0.663934 | 1_1:+52189757 | Msa0027680:CDS |
| TTAACCGATCAATAAATCCG+CGG | 0.665579 | 1_1:-52193333 | None:intergenic |
| AATTGGACCAAAGTGGATGG+AGG | 0.668982 | 1_1:+52189285 | Msa0027680:CDS |
| GCAAACCTAAAGCCAAACAA+AGG | 0.673782 | 1_1:-52188731 | None:intergenic |
| GTAGCATGGAAGTAGGAAGT+GGG | 0.674257 | 1_1:+52189693 | Msa0027680:CDS |
| TCGTTGGACCAAGACACTTG+AGG | 0.677045 | 1_1:+52190595 | Msa0027680:CDS |
| GAACATTTATCCCTAACCAG+TGG | 0.678694 | 1_1:+52189234 | Msa0027680:CDS |
| GCTCTTAGTACCTATAATTG+GGG | 0.679670 | 1_1:+52188996 | Msa0027680:CDS |
| ATATCCACAAGATATCGGAA+CGG | 0.702922 | 1_1:-52188594 | None:intergenic |
| CCAACACGTAACATGTCCAG+TGG | 0.705795 | 1_1:-52191233 | None:intergenic |
| GTAAACTCCAATGGACTGAG+CGG | 0.711805 | 1_1:+52190552 | Msa0027680:CDS |
| TCAAGTGTCTTGGTCCAACG+AGG | 0.711931 | 1_1:-52190593 | None:intergenic |
| AGATACTGCAAAGATACCCG+CGG | 0.714457 | 1_1:+52193316 | Msa0027680:CDS |
| TCTACCAACTTATTGGTACG+GGG | 0.719408 | 1_1:-52188522 | None:intergenic |
| GGGATGGTGAAGCAAAATGG+GGG | 0.720669 | 1_1:+52191676 | Msa0027680:CDS |
| AAAGTGTAGTAAGATTGATG+CGG | 0.726301 | 1_1:+52189733 | Msa0027680:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAAAAAAAAAAAGGTTAA+CGG | - | chr1_1:52190254-52190273 | None:intergenic | 10.0% |
| !! | TATTTAATCGTAAAATAAAT+TGG | - | chr1_1:52191971-52191990 | None:intergenic | 10.0% |
| !!! | TTTTCATTTAAAAAAAATTG+AGG | - | chr1_1:52192468-52192487 | None:intergenic | 10.0% |
| !!! | TTTTATTTTTTTAAAGTGTT+TGG | + | chr1_1:52192951-52192970 | Msa0027680:intron | 10.0% |
| !! | TACTAAATACTAATATATTA+TGG | + | chr1_1:52193167-52193186 | Msa0027680:intron | 10.0% |
| !! | ACTAAATACTAATATATTAT+GGG | + | chr1_1:52193168-52193187 | Msa0027680:intron | 10.0% |
| !! | ACATAAATAAAAGTAAGTAA+TGG | - | chr1_1:52190303-52190322 | None:intergenic | 15.0% |
| !!! | AATTTTGTCAGATTATTTTT+CGG | + | chr1_1:52190401-52190420 | Msa0027680:CDS | 15.0% |
| !!! | AACTCTTAAATAAATTGTTT+TGG | + | chr1_1:52191347-52191366 | Msa0027680:intron | 15.0% |
| !! | CTAAATACTAATATATTATG+GGG | + | chr1_1:52193169-52193188 | Msa0027680:intron | 15.0% |
| !! | AAATACATATATAGATAAAG+GGG | - | chr1_1:52193466-52193485 | None:intergenic | 15.0% |
| !! | GAAATACATATATAGATAAA+GGG | - | chr1_1:52193467-52193486 | None:intergenic | 15.0% |
| !! | AGAAATACATATATAGATAA+AGG | - | chr1_1:52193468-52193487 | None:intergenic | 15.0% |
| !! | TTAATATAACTGTGTGATTT+CGG | - | chr1_1:52188942-52188961 | None:intergenic | 20.0% |
| !!! | ATTTGTCATTTGATTAGATA+TGG | + | chr1_1:52189205-52189224 | Msa0027680:intron | 20.0% |
| !!! | TTTGTCATTTGATTAGATAT+GGG | + | chr1_1:52189206-52189225 | Msa0027680:intron | 20.0% |
| !!! | TTTTATTTATGTATTGCCTT+AGG | + | chr1_1:52190311-52190330 | Msa0027680:intron | 20.0% |
| !! | TTATAATTAATGTTAGGCAT+GGG | - | chr1_1:52190486-52190505 | None:intergenic | 20.0% |
| !! | ATTATAATTAATGTTAGGCA+TGG | - | chr1_1:52190487-52190506 | None:intergenic | 20.0% |
| !! | CTGCAATTATAATTAATGTT+AGG | - | chr1_1:52190492-52190511 | None:intergenic | 20.0% |
| !! | TTAATTATAATTGCAGTTTG+AGG | + | chr1_1:52190496-52190515 | Msa0027680:intron | 20.0% |
| !! | TCATTGACATCAAATTTATT+AGG | - | chr1_1:52191115-52191134 | None:intergenic | 20.0% |
| !! | TTGATATATTACTTGTGTAT+AGG | + | chr1_1:52191575-52191594 | Msa0027680:intron | 20.0% |
| !! | TGATATATTACTTGTGTATA+GGG | + | chr1_1:52191576-52191595 | Msa0027680:intron | 20.0% |
| !! | AATAACTCACTAGAATATAT+GGG | + | chr1_1:52192111-52192130 | Msa0027680:intron | 20.0% |
| !! | TTGTTTGAGGAAAATAAAAA+TGG | + | chr1_1:52192139-52192158 | Msa0027680:intron | 20.0% |
| !! | TATTTGACAGGAATAAAAAT+GGG | - | chr1_1:52192297-52192316 | None:intergenic | 20.0% |
| !! | TTCAACAATCAATTTCATAT+AGG | - | chr1_1:52192393-52192412 | None:intergenic | 20.0% |
| !!! | CAAGAATTATTTTCTTTTGT+CGG | + | chr1_1:52192508-52192527 | Msa0027680:intron | 20.0% |
| !!! | ATGATTTTATTTTCAAACGA+GGG | - | chr1_1:52193077-52193096 | None:intergenic | 20.0% |
| !! | TCGTTTGAAAATAAAATCAT+GGG | + | chr1_1:52193077-52193096 | Msa0027680:intron | 20.0% |
| !! | TCTATATATGTATTTCTTTG+AGG | + | chr1_1:52193471-52193490 | Msa0027680:three_prime_UTR | 20.0% |
| !! | TTCGATAACAAAACAAAAAA+AGG | - | chr1_1:52193512-52193531 | None:intergenic | 20.0% |
| !!! | TTTTTTTGTTTTGTTATCGA+AGG | + | chr1_1:52193511-52193530 | Msa0027680:three_prime_UTR | 20.0% |
| ! | GTTAATATCTACCAACTTAT+TGG | - | chr1_1:52188532-52188551 | None:intergenic | 25.0% |
| ! | AATGAATGGTACTTTATTGA+AGG | + | chr1_1:52188632-52188651 | Msa0027680:CDS | 25.0% |
| ! | TATTGAAGGAATTATTGCAT+AGG | + | chr1_1:52188646-52188665 | Msa0027680:CDS | 25.0% |
| ! | AATTGAAAATCTTAGTAGTG+CGG | + | chr1_1:52189040-52189059 | Msa0027680:CDS | 25.0% |
| ! | AATATTCAATACCTGCAATA+CGG | - | chr1_1:52189123-52189142 | None:intergenic | 25.0% |
| !!! | TGCAGGTATTGAATATTAAA+TGG | + | chr1_1:52189126-52189145 | Msa0027680:intron | 25.0% |
| !!! | GCAGGTATTGAATATTAAAT+GGG | + | chr1_1:52189127-52189146 | Msa0027680:intron | 25.0% |
| ! | TTGCCTTTAGTATATTAACT+CGG | + | chr1_1:52189353-52189372 | Msa0027680:intron | 25.0% |
| ! | TTACCGAGTTAATATACTAA+AGG | - | chr1_1:52189359-52189378 | None:intergenic | 25.0% |
| ! | TAGTATATTAACTCGGTAAA+TGG | + | chr1_1:52189360-52189379 | Msa0027680:intron | 25.0% |
| ! | AGTATATTAACTCGGTAAAT+GGG | + | chr1_1:52189361-52189380 | Msa0027680:intron | 25.0% |
| ! | ACCTATTTAATGTGATTAGT+TGG | + | chr1_1:52189424-52189443 | Msa0027680:intron | 25.0% |
| ! | ACCAACTAATCACATTAAAT+AGG | - | chr1_1:52189428-52189447 | None:intergenic | 25.0% |
| ! | GAGGATATTAAAAGCAAATA+AGG | + | chr1_1:52189640-52189659 | Msa0027680:CDS | 25.0% |
| ! | TTAAAAGCAAATAAGGTTGA+CGG | + | chr1_1:52189647-52189666 | Msa0027680:CDS | 25.0% |
| !!! | TTTTTTTAGTGTGTTATGTG+AGG | + | chr1_1:52190149-52190168 | Msa0027680:intron | 25.0% |
| ! | ATACTCTAATGAAAGAAAAC+AGG | - | chr1_1:52190784-52190803 | None:intergenic | 25.0% |
| ! | ATATTTGAATTGACAGAACA+AGG | + | chr1_1:52190828-52190847 | Msa0027680:intron | 25.0% |
| ! | TCAAATATAGAGAATAATGC+TGG | + | chr1_1:52190903-52190922 | Msa0027680:intron | 25.0% |
| ! | AAACAAAACTCGCAAAATTA+GGG | - | chr1_1:52191073-52191092 | None:intergenic | 25.0% |
| ! | AAAACAAAACTCGCAAAATT+AGG | - | chr1_1:52191074-52191093 | None:intergenic | 25.0% |
| ! | ATTTACCAAAGCAACAAAAT+TGG | + | chr1_1:52191521-52191540 | Msa0027680:CDS | 25.0% |
| !! | GCTTTCAGTTTTCAATATAT+TGG | - | chr1_1:52191902-52191921 | None:intergenic | 25.0% |
| ! | AATTAGAATTGTTAAGACTC+AGG | + | chr1_1:52191922-52191941 | Msa0027680:intron | 25.0% |
| ! | TGAATGTTGTATCTATTGTT+TGG | + | chr1_1:52192009-52192028 | Msa0027680:intron | 25.0% |
| ! | GAATGTTGTATCTATTGTTT+GGG | + | chr1_1:52192010-52192029 | Msa0027680:intron | 25.0% |
| ! | CCCTTATAATTCCAAAAATA+CGG | - | chr1_1:52192056-52192075 | None:intergenic | 25.0% |
| !!! | CCGTATTTTTGGAATTATAA+GGG | + | chr1_1:52192053-52192072 | Msa0027680:intron | 25.0% |
| !!! | CGTATTTTTGGAATTATAAG+GGG | + | chr1_1:52192054-52192073 | Msa0027680:intron | 25.0% |
| !!! | ATGTTATGTTAATTTGTTCC+CGG | + | chr1_1:52192087-52192106 | Msa0027680:intron | 25.0% |
| ! | GAATAACTCACTAGAATATA+TGG | + | chr1_1:52192110-52192129 | Msa0027680:intron | 25.0% |
| !!! | ACTGTCATTATTTTTTTCCT+GGG | - | chr1_1:52192248-52192267 | None:intergenic | 25.0% |
| !!! | AACTGTCATTATTTTTTTCC+TGG | - | chr1_1:52192249-52192268 | None:intergenic | 25.0% |
| ! | CTATTTGACAGGAATAAAAA+TGG | - | chr1_1:52192298-52192317 | None:intergenic | 25.0% |
| !! | CATTTTTATTCCTGTCAAAT+AGG | + | chr1_1:52192296-52192315 | Msa0027680:intron | 25.0% |
| !! | ATTTTCACAGAAATTTACCT+GGG | - | chr1_1:52192338-52192357 | None:intergenic | 25.0% |
| ! | AACAATCAATTTCATATAGG+AGG | - | chr1_1:52192390-52192409 | None:intergenic | 25.0% |
| ! | CATGTGATATCAATATTTCT+TGG | + | chr1_1:52192418-52192437 | Msa0027680:intron | 25.0% |
| !! | GATAATTTTCTTTGTTCCAT+TGG | + | chr1_1:52192532-52192551 | Msa0027680:intron | 25.0% |
| !!! | TAATTCCTGGGAATTTTTTA+TGG | - | chr1_1:52192784-52192803 | None:intergenic | 25.0% |
| ! | TGTTCAATAGTATAATTCCT+GGG | - | chr1_1:52192796-52192815 | None:intergenic | 25.0% |
| ! | TTGTTCAATAGTATAATTCC+TGG | - | chr1_1:52192797-52192816 | None:intergenic | 25.0% |
| ! | ATTCCAACATTTATATTCCT+GGG | + | chr1_1:52192848-52192867 | Msa0027680:intron | 25.0% |
| ! | TAAAATTGAAACCCAAGAAT+AGG | - | chr1_1:52192936-52192955 | None:intergenic | 25.0% |
| !!! | CATGATTTTATTTTCAAACG+AGG | - | chr1_1:52193078-52193097 | None:intergenic | 25.0% |
| ! | CTCGTTTGAAAATAAAATCA+TGG | + | chr1_1:52193076-52193095 | Msa0027680:intron | 25.0% |
| !!! | TATATAGATAAAGGGGTATT+AGG | - | chr1_1:52193459-52193478 | None:intergenic | 25.0% |
| ! | TTATCGAAGGTCATATATAA+AGG | + | chr1_1:52193524-52193543 | Msa0027680:three_prime_UTR | 25.0% |
| CAACGGTATTCATTCAATAA+TGG | - | chr1_1:52188472-52188491 | None:intergenic | 30.0% | |
| TATCTACCAACTTATTGGTA+CGG | - | chr1_1:52188527-52188546 | None:intergenic | 30.0% | |
| TCTTCATATCCACAAGATAT+CGG | - | chr1_1:52188602-52188621 | None:intergenic | 30.0% | |
| AAGACCTATATAGGAATGAA+TGG | + | chr1_1:52188618-52188637 | Msa0027680:CDS | 30.0% | |
| AGTACCATTCATTCCTATAT+AGG | - | chr1_1:52188625-52188644 | None:intergenic | 30.0% | |
| ACAAAGGTCTAGATGTTTAA+AGG | - | chr1_1:52188718-52188737 | None:intergenic | 30.0% | |
| TAAACATCTAGACCTTTGTT+TGG | + | chr1_1:52188719-52188738 | Msa0027680:CDS | 30.0% | |
| ! | CTGTATCATTCTTTTGTTGA+TGG | - | chr1_1:52189076-52189095 | None:intergenic | 30.0% |
| GATACAGTTATACACATTTC+TGG | + | chr1_1:52189089-52189108 | Msa0027680:CDS | 30.0% | |
| !!! | AAACCTTTTTTCAAATGCGA+AGG | + | chr1_1:52189323-52189342 | Msa0027680:CDS | 30.0% |
| TAACCTTCGCATTTGAAAAA+AGG | - | chr1_1:52189329-52189348 | None:intergenic | 30.0% | |
| ! | TTAATGTGATTAGTTGGTTG+AGG | + | chr1_1:52189430-52189449 | Msa0027680:intron | 30.0% |
| AAGCTTGCACATCAAAAAAA+GGG | - | chr1_1:52189544-52189563 | None:intergenic | 30.0% | |
| TAAGCTTGCACATCAAAAAA+AGG | - | chr1_1:52189545-52189564 | None:intergenic | 30.0% | |
| ! | TTTTGATGTGCAAGCTTATA+TGG | + | chr1_1:52189547-52189566 | Msa0027680:CDS | 30.0% |
| AAAGTGTAGTAAGATTGATG+CGG | + | chr1_1:52189733-52189752 | Msa0027680:CDS | 30.0% | |
| GAAAAGCAGAAGAAAATGAT+GGG | + | chr1_1:52189783-52189802 | Msa0027680:CDS | 30.0% | |
| TGGTGAAGAGGAAAAAAAAT+TGG | + | chr1_1:52189829-52189848 | Msa0027680:CDS | 30.0% | |
| TTGGAAGAAGAAAATGATGA+TGG | + | chr1_1:52189848-52189867 | Msa0027680:CDS | 30.0% | |
| TGGAAGAAGAAAATGATGAT+GGG | + | chr1_1:52189849-52189868 | Msa0027680:CDS | 30.0% | |
| GGGTGAAGAAGAAAAAAAAA+TGG | + | chr1_1:52189895-52189914 | Msa0027680:CDS | 30.0% | |
| ATGGAAGAAGATAAAGACAA+TGG | + | chr1_1:52189914-52189933 | Msa0027680:CDS | 30.0% | |
| TGGAAGAAGATAAAGACAAT+GGG | + | chr1_1:52189915-52189934 | Msa0027680:CDS | 30.0% | |
| TGGCTGAAAAGGAAAAAAAA+AGG | + | chr1_1:52189960-52189979 | Msa0027680:CDS | 30.0% | |
| TTTATTCTGCACACATGAAA+AGG | + | chr1_1:52190018-52190037 | Msa0027680:CDS | 30.0% | |
| !!! | AACTACATTTTTTCATGTCG+CGG | + | chr1_1:52190080-52190099 | Msa0027680:intron | 30.0% |
| CCAGCAATATTAATAACCTA+AGG | - | chr1_1:52190330-52190349 | None:intergenic | 30.0% | |
| CCTTAGGTTATTAATATTGC+TGG | + | chr1_1:52190327-52190346 | Msa0027680:intron | 30.0% | |
| !! | TGTCAGATTATTTTTCGGTA+CGG | + | chr1_1:52190406-52190425 | Msa0027680:intron | 30.0% |
| !! | TGAGGTAGTTGATGATTTAA+AGG | + | chr1_1:52190514-52190533 | Msa0027680:CDS | 30.0% |
| AGTCATCATTATGATGTTGT+AGG | + | chr1_1:52190660-52190679 | Msa0027680:intron | 30.0% | |
| !!! | AGGAGTTTGCTGATTTATTT+TGG | + | chr1_1:52190848-52190867 | Msa0027680:intron | 30.0% |
| !!! | CATTGTGGTTTTGTCTATAT+GGG | + | chr1_1:52190962-52190981 | Msa0027680:intron | 30.0% |
| AACAAAACTCGCAAAATTAG+GGG | - | chr1_1:52191072-52191091 | None:intergenic | 30.0% | |
| ! | GTAGTGGAATTGATGAATAA+AGG | + | chr1_1:52191445-52191464 | Msa0027680:CDS | 30.0% |
| AATAAAGGAGCGAACAATAA+AGG | + | chr1_1:52191460-52191479 | Msa0027680:CDS | 30.0% | |
| GAACAATAAAGGAGATATGT+TGG | + | chr1_1:52191471-52191490 | Msa0027680:CDS | 30.0% | |
| AGATATGTTGGAATCTTCTT+TGG | + | chr1_1:52191483-52191502 | Msa0027680:CDS | 30.0% | |
| !! | ACTAACCAATTTTGTTGCTT+TGG | - | chr1_1:52191529-52191548 | None:intergenic | 30.0% |
| ! | AAATTTTGCAGTCATGATTG+TGG | + | chr1_1:52191624-52191643 | Msa0027680:intron | 30.0% |
| ! | AATTTTGCAGTCATGATTGT+GGG | + | chr1_1:52191625-52191644 | Msa0027680:intron | 30.0% |
| GGTATATGTTCTTAAGTACT+TGG | + | chr1_1:52191647-52191666 | Msa0027680:CDS | 30.0% | |
| AAGCATTACCAATGAATAGT+CGG | - | chr1_1:52191715-52191734 | None:intergenic | 30.0% | |
| CAATTAATCATCATTGACAG+CGG | + | chr1_1:52191816-52191835 | Msa0027680:intron | 30.0% | |
| GCAATTAGGCTGTATATTTA+GGG | - | chr1_1:52191870-52191889 | None:intergenic | 30.0% | |
| TGCAATTAGGCTGTATATTT+AGG | - | chr1_1:52191871-52191890 | None:intergenic | 30.0% | |
| !! | CTATTGTTTGGGTTTTTAAC+TGG | + | chr1_1:52192021-52192040 | Msa0027680:intron | 30.0% |
| !!! | GCCGTATTTTTGGAATTATA+AGG | + | chr1_1:52192052-52192071 | Msa0027680:intron | 30.0% |
| !! | TGTTATGTTAATTTGTTCCC+GGG | + | chr1_1:52192088-52192107 | Msa0027680:intron | 30.0% |
| ATATTCTAGTGAGTTATTCC+CGG | - | chr1_1:52192109-52192128 | None:intergenic | 30.0% | |
| GAATTACATATGCCATTGTT+TGG | + | chr1_1:52192182-52192201 | Msa0027680:intron | 30.0% | |
| GGAACAAAAAAAATATGCCT+AGG | + | chr1_1:52192211-52192230 | Msa0027680:intron | 30.0% | |
| AATAAAAATGGGCAAAACGT+GGG | - | chr1_1:52192286-52192305 | None:intergenic | 30.0% | |
| TTTATTCCTGTCAAATAGGA+TGG | + | chr1_1:52192300-52192319 | Msa0027680:intron | 30.0% | |
| TTATTCCTGTCAAATAGGAT+GGG | + | chr1_1:52192301-52192320 | Msa0027680:intron | 30.0% | |
| ! | GATTTTCACAGAAATTTACC+TGG | - | chr1_1:52192339-52192358 | None:intergenic | 30.0% |
| ATAGAAGTCCAAACTCAATT+GGG | - | chr1_1:52192565-52192584 | None:intergenic | 30.0% | |
| !!! | GACTTCTATGCATTGATTTT+GGG | + | chr1_1:52192576-52192595 | Msa0027680:intron | 30.0% |
| !!! | CACTTTTTTCTACAATTTCC+TGG | + | chr1_1:52192818-52192837 | Msa0027680:intron | 30.0% |
| ! | AATGTTGGAATCTTATTTCC+AGG | - | chr1_1:52192839-52192858 | None:intergenic | 30.0% |
| GATTCCAACATTTATATTCC+TGG | + | chr1_1:52192847-52192866 | Msa0027680:intron | 30.0% | |
| TTTCCCAGGAATATAAATGT+TGG | - | chr1_1:52192854-52192873 | None:intergenic | 30.0% | |
| GGGTTACAAAATTAATACCT+GGG | - | chr1_1:52192883-52192902 | None:intergenic | 30.0% | |
| AGGGTTACAAAATTAATACC+TGG | - | chr1_1:52192884-52192903 | None:intergenic | 30.0% | |
| AATAGGATTCCCAACATTTA+GGG | - | chr1_1:52192919-52192938 | None:intergenic | 30.0% | |
| TATATTTCATTCCGATCTCA+CGG | + | chr1_1:52193036-52193055 | Msa0027680:intron | 30.0% | |
| !! | TTTATTTTCAAACGAGGGTT+GGG | - | chr1_1:52193072-52193091 | None:intergenic | 30.0% |
| !!! | TTTTATTTTCAAACGAGGGT+TGG | - | chr1_1:52193073-52193092 | None:intergenic | 30.0% |
| TGTGTAAGTTATTTGTTTCC+AGG | + | chr1_1:52193101-52193120 | Msa0027680:intron | 30.0% | |
| ACTGTGTATAAAACATTTCC+TGG | - | chr1_1:52193122-52193141 | None:intergenic | 30.0% | |
| TTATACACAGTAACACACAT+TGG | + | chr1_1:52193131-52193150 | Msa0027680:intron | 30.0% | |
| TGTAAGTAAATGCAGTTAGT+TGG | - | chr1_1:52193215-52193234 | None:intergenic | 30.0% | |
| AACTAACTGCATTTACTTAC+AGG | + | chr1_1:52193214-52193233 | Msa0027680:intron | 30.0% | |
| TGCAGTATCTAATACAAATC+TGG | - | chr1_1:52193306-52193325 | None:intergenic | 30.0% | |
| ! | GCGTTTTGTATAATATTCGT+TGG | + | chr1_1:52193406-52193425 | Msa0027680:three_prime_UTR | 30.0% |
| TAATATTCGTTGGTGTATCA+TGG | + | chr1_1:52193416-52193435 | Msa0027680:three_prime_UTR | 30.0% | |
| !! | ATAAAGGGGTATTAGGATAA+AGG | - | chr1_1:52193452-52193471 | None:intergenic | 30.0% |
| ATCTACCAACTTATTGGTAC+GGG | - | chr1_1:52188526-52188545 | None:intergenic | 35.0% | |
| ATATCCACAAGATATCGGAA+CGG | - | chr1_1:52188597-52188616 | None:intergenic | 35.0% | |
| GTGGATATGAAGACCTATAT+AGG | + | chr1_1:52188609-52188628 | Msa0027680:CDS | 35.0% | |
| TGAAGGAATTATTGCATAGG+TGG | + | chr1_1:52188649-52188668 | Msa0027680:CDS | 35.0% | |
| GAAGGAATTATTGCATAGGT+GGG | + | chr1_1:52188650-52188669 | Msa0027680:CDS | 35.0% | |
| ! | AGTAGCTTAGGATTTAGAGT+AGG | + | chr1_1:52188678-52188697 | Msa0027680:CDS | 35.0% |
| !! | TATTGTAGGAGAGTGTTTAC+CGG | + | chr1_1:52188755-52188774 | Msa0027680:CDS | 35.0% |
| TTTACCGGAAACTAGTGATA+GGG | + | chr1_1:52188770-52188789 | Msa0027680:CDS | 35.0% | |
| TAGTGTACATTCTAAGCTGA+AGG | + | chr1_1:52188842-52188861 | Msa0027680:CDS | 35.0% | |
| CGGAAAATATAACACACACA+AGG | - | chr1_1:52188922-52188941 | None:intergenic | 35.0% | |
| ACGCTCTTAGTACCTATAAT+TGG | + | chr1_1:52188994-52189013 | Msa0027680:CDS | 35.0% | |
| CGCTCTTAGTACCTATAATT+GGG | + | chr1_1:52188995-52189014 | Msa0027680:CDS | 35.0% | |
| GCTCTTAGTACCTATAATTG+GGG | + | chr1_1:52188996-52189015 | Msa0027680:CDS | 35.0% | |
| GTCATTTGATTAGATATGGG+CGG | + | chr1_1:52189209-52189228 | Msa0027680:intron | 35.0% | |
| ! | GTTTTCCACGCATTAACAAT+TGG | + | chr1_1:52189268-52189287 | Msa0027680:CDS | 35.0% |
| CATTAACAATTGGACCAAAG+TGG | + | chr1_1:52189278-52189297 | Msa0027680:CDS | 35.0% | |
| !! | TTTTCCATGTCTTGTTGTGT+TGG | - | chr1_1:52189464-52189483 | None:intergenic | 35.0% |
| ACCAACTTGAGAATGGTTAA+CGG | - | chr1_1:52189504-52189523 | None:intergenic | 35.0% | |
| !! | AACCATTCTCAAGTTGGTAT+TGG | + | chr1_1:52189506-52189525 | Msa0027680:CDS | 35.0% |
| CTTATATGGCTGAACATCAA+AGG | + | chr1_1:52189561-52189580 | Msa0027680:CDS | 35.0% | |
| ! | AACACAAAGATTTGCTTTCC+CGG | + | chr1_1:52189594-52189613 | Msa0027680:CDS | 35.0% |
| ATATCCTCATATCATCCTCA+AGG | - | chr1_1:52189628-52189647 | None:intergenic | 35.0% | |
| AAGATTGATGCGGATAATGA+TGG | + | chr1_1:52189743-52189762 | Msa0027680:CDS | 35.0% | |
| AGATTGATGCGGATAATGAT+GGG | + | chr1_1:52189744-52189763 | Msa0027680:CDS | 35.0% | |
| !! | TAATGATGGGTTGAAAAGTG+AGG | + | chr1_1:52189757-52189776 | Msa0027680:CDS | 35.0% |
| GGAAAAGCAGAAGAAAATGA+TGG | + | chr1_1:52189782-52189801 | Msa0027680:CDS | 35.0% | |
| ! | AGAAAATGATGGGATGAAGT+TGG | + | chr1_1:52189793-52189812 | Msa0027680:CDS | 35.0% |
| AAGTTGGATGATGAAGATGT+TGG | + | chr1_1:52189809-52189828 | Msa0027680:CDS | 35.0% | |
| !! | AGAAAATGATGATGGGATGA+AGG | + | chr1_1:52189856-52189875 | Msa0027680:CDS | 35.0% |
| !! | AAGGTTGATGATGAAGATGT+GGG | + | chr1_1:52189875-52189894 | Msa0027680:CDS | 35.0% |
| AGAAGATAAAGACAATGGGA+TGG | + | chr1_1:52189919-52189938 | Msa0027680:CDS | 35.0% | |
| ! | TGATGATGATATGGCTGAAA+AGG | + | chr1_1:52189949-52189968 | Msa0027680:CDS | 35.0% |
| !!! | ACTACATTTTTTCATGTCGC+GGG | + | chr1_1:52190081-52190100 | Msa0027680:intron | 35.0% |
| AGGTTATTAATATTGCTGGC+AGG | + | chr1_1:52190331-52190350 | Msa0027680:intron | 35.0% | |
| CATGATGAAGTTCGAAAACA+TGG | + | chr1_1:52190363-52190382 | Msa0027680:CDS | 35.0% | |
| ATAAAGTCAAACAACCGTGA+TGG | + | chr1_1:52190442-52190461 | Msa0027680:intron | 35.0% | |
| TAAAGTCAAACAACCGTGAT+GGG | + | chr1_1:52190443-52190462 | Msa0027680:intron | 35.0% | |
| TAAAGGTTGAATACCCATCA+CGG | - | chr1_1:52190459-52190478 | None:intergenic | 35.0% | |
| TGTTAGGCATGGGATAATAA+AGG | - | chr1_1:52190476-52190495 | None:intergenic | 35.0% | |
| TCAAGATATATATGCCTCGT+TGG | + | chr1_1:52190579-52190598 | Msa0027680:CDS | 35.0% | |
| AGGTGTAGATGATTTCTGAT+TGG | + | chr1_1:52190680-52190699 | Msa0027680:intron | 35.0% | |
| ! | TTGTCTAGAATGTTGATGAG+TGG | + | chr1_1:52190709-52190728 | Msa0027680:intron | 35.0% |
| ! | TGTCTAGAATGTTGATGAGT+GGG | + | chr1_1:52190710-52190729 | Msa0027680:intron | 35.0% |
| CTCTACCTAAAATTCCCTTT+AGG | + | chr1_1:52190927-52190946 | Msa0027680:intron | 35.0% | |
| !!! | GCATTGTGGTTTTGTCTATA+TGG | + | chr1_1:52190961-52190980 | Msa0027680:intron | 35.0% |
| GGGTTTGTGTTGTATTAGTT+CGG | + | chr1_1:52190982-52191001 | Msa0027680:intron | 35.0% | |
| TTTGTGTTGTATTAGTTCGG+TGG | + | chr1_1:52190985-52191004 | Msa0027680:intron | 35.0% | |
| TTGTGTTGTATTAGTTCGGT+GGG | + | chr1_1:52190986-52191005 | Msa0027680:intron | 35.0% | |
| ! | GTTTTGTGTGGTTTTTTGTG+CGG | + | chr1_1:52191015-52191034 | Msa0027680:intron | 35.0% |
| ! | TTTTGTGTGGTTTTTTGTGC+GGG | + | chr1_1:52191016-52191035 | Msa0027680:intron | 35.0% |
| GCAAAATTAGGGGTTACAAT+AGG | - | chr1_1:52191062-52191081 | None:intergenic | 35.0% | |
| !!! | CGAATTTGTTTTATGCAACG+TGG | + | chr1_1:52191157-52191176 | Msa0027680:intron | 35.0% |
| ! | TTACAGAAAGTCCGTTTTGA+AGG | + | chr1_1:52191421-52191440 | Msa0027680:intron | 35.0% |
| !! | TACAGAAAGTCCGTTTTGAA+GGG | + | chr1_1:52191422-52191441 | Msa0027680:intron | 35.0% |
| TATGTTGGAATCTTCTTTGG+AGG | + | chr1_1:52191486-52191505 | Msa0027680:CDS | 35.0% | |
| ! | ATTTTGCAGTCATGATTGTG+GGG | + | chr1_1:52191626-52191645 | Msa0027680:intron | 35.0% |
| TTCTTAAGTACTTGGAGTTG+TGG | + | chr1_1:52191655-52191674 | Msa0027680:CDS | 35.0% | |
| TCTTAAGTACTTGGAGTTGT+GGG | + | chr1_1:52191656-52191675 | Msa0027680:CDS | 35.0% | |
| AGCATTACCAATGAATAGTC+GGG | - | chr1_1:52191714-52191733 | None:intergenic | 35.0% | |
| ATTGGATGTCTACTGCAATT+AGG | - | chr1_1:52191884-52191903 | None:intergenic | 35.0% | |
| TAGAATTGTTAAGACTCAGG+TGG | + | chr1_1:52191925-52191944 | Msa0027680:intron | 35.0% | |
| !! | TTGTTTGGGTTTTTAACTGG+AGG | + | chr1_1:52192024-52192043 | Msa0027680:intron | 35.0% |
| TATTCTAGTGAGTTATTCCC+GGG | - | chr1_1:52192108-52192127 | None:intergenic | 35.0% | |
| GGAAAATAAAAATGGTTCCC+AGG | + | chr1_1:52192147-52192166 | Msa0027680:intron | 35.0% | |
| AATTCCAACCTTAGATTCCT+GGG | - | chr1_1:52192167-52192186 | None:intergenic | 35.0% | |
| TAATTCCAACCTTAGATTCC+TGG | - | chr1_1:52192168-52192187 | None:intergenic | 35.0% | |
| ATATGCCATTGTTTGGTAGA+TGG | + | chr1_1:52192189-52192208 | Msa0027680:intron | 35.0% | |
| TATGCCATTGTTTGGTAGAT+GGG | + | chr1_1:52192190-52192209 | Msa0027680:intron | 35.0% | |
| CCTGGGTATAATTTATTCCT+AGG | - | chr1_1:52192231-52192250 | None:intergenic | 35.0% | |
| CCTAGGAATAAATTATACCC+AGG | + | chr1_1:52192228-52192247 | Msa0027680:intron | 35.0% | |
| GAATAAAAATGGGCAAAACG+TGG | - | chr1_1:52192287-52192306 | None:intergenic | 35.0% | |
| !! | AGGTGATAAGCATTGGTTAA+GGG | - | chr1_1:52192370-52192389 | None:intergenic | 35.0% |
| ATATAGGAGGTGATAAGCAT+TGG | - | chr1_1:52192377-52192396 | None:intergenic | 35.0% | |
| TCAATTGGGGAAAATTCCAA+TGG | - | chr1_1:52192551-52192570 | None:intergenic | 35.0% | |
| ! | GAATTTTCCCCAATTGAGTT+TGG | + | chr1_1:52192554-52192573 | Msa0027680:intron | 35.0% |
| TAGAAGTCCAAACTCAATTG+GGG | - | chr1_1:52192564-52192583 | None:intergenic | 35.0% | |
| CATAGAAGTCCAAACTCAAT+TGG | - | chr1_1:52192566-52192585 | None:intergenic | 35.0% | |
| !!! | GGACTTCTATGCATTGATTT+TGG | + | chr1_1:52192575-52192594 | Msa0027680:intron | 35.0% |
| !!! | ATGCATTGATTTTGGGATGA+TGG | + | chr1_1:52192583-52192602 | Msa0027680:intron | 35.0% |
| TTACACATCCCTTTCCATAT+TGG | - | chr1_1:52192609-52192628 | None:intergenic | 35.0% | |
| GTAATACAAGAAAGAGAACC+TGG | + | chr1_1:52192625-52192644 | Msa0027680:intron | 35.0% | |
| ACAGGATTTAGAAATGTCGA+TGG | + | chr1_1:52192721-52192740 | Msa0027680:intron | 35.0% | |
| !! | AAATGTCGATGGTATTGACA+GGG | + | chr1_1:52192732-52192751 | Msa0027680:intron | 35.0% |
| TCATGCCATAAAAAATTCCC+AGG | + | chr1_1:52192776-52192795 | Msa0027680:intron | 35.0% | |
| GAATAGGATTCCCAACATTT+AGG | - | chr1_1:52192920-52192939 | None:intergenic | 35.0% | |
| AATGTTGGGAATCCTATTCT+TGG | + | chr1_1:52192921-52192940 | Msa0027680:intron | 35.0% | |
| ATGTTGGGAATCCTATTCTT+GGG | + | chr1_1:52192922-52192941 | Msa0027680:intron | 35.0% | |
| GTTAACATGTGTAACATTCC+CGG | + | chr1_1:52192973-52192992 | Msa0027680:intron | 35.0% | |
| TTAACATGTGTAACATTCCC+GGG | + | chr1_1:52192974-52192993 | Msa0027680:intron | 35.0% | |
| ATATTTCATTCCGATCTCAC+GGG | + | chr1_1:52193037-52193056 | Msa0027680:intron | 35.0% | |
| ! | TTATTTTCAAACGAGGGTTG+GGG | - | chr1_1:52193071-52193090 | None:intergenic | 35.0% |
| TAACTGCATTTACTTACAGG+AGG | + | chr1_1:52193217-52193236 | Msa0027680:intron | 35.0% | |
| TTAACCGATCAATAAATCCG+CGG | - | chr1_1:52193336-52193355 | None:intergenic | 35.0% | |
| TTTGTCTAACTTGATTGTGC+TGG | + | chr1_1:52193363-52193382 | Msa0027680:three_prime_UTR | 35.0% | |
| ATCTGTGGCTGCAAATTCAA+CGG | - | chr1_1:52188489-52188508 | None:intergenic | 40.0% | |
| GGCATTTGAGTCTTTATCTG+TGG | - | chr1_1:52188504-52188523 | None:intergenic | 40.0% | |
| TCTACCAACTTATTGGTACG+GGG | - | chr1_1:52188525-52188544 | None:intergenic | 40.0% | |
| TTTGCGCATCAGACAATGTT+CGG | - | chr1_1:52188554-52188573 | None:intergenic | 40.0% | |
| ! | TAGGATTTAGAGTAGGCGTT+AGG | + | chr1_1:52188685-52188704 | Msa0027680:CDS | 40.0% |
| !! | CTAGACCTTTGTTTGGCTTT+AGG | + | chr1_1:52188726-52188745 | Msa0027680:CDS | 40.0% |
| GCAAACCTAAAGCCAAACAA+AGG | - | chr1_1:52188734-52188753 | None:intergenic | 40.0% | |
| ! | GCTTTAGGTTTGCCTATTGT+AGG | + | chr1_1:52188741-52188760 | Msa0027680:CDS | 40.0% |
| GGTAAACACTCTCCTACAAT+AGG | - | chr1_1:52188756-52188775 | None:intergenic | 40.0% | |
| GTTTACCGGAAACTAGTGAT+AGG | + | chr1_1:52188769-52188788 | Msa0027680:CDS | 40.0% | |
| ! | CTAACCCTATCACTAGTTTC+CGG | - | chr1_1:52188777-52188796 | None:intergenic | 40.0% |
| AACAGCAACACCCCAATTAT+AGG | - | chr1_1:52189009-52189028 | None:intergenic | 40.0% | |
| GAACATTTATCCCTAACCAG+TGG | + | chr1_1:52189234-52189253 | Msa0027680:CDS | 40.0% | |
| ! | CTTAATTGGACCACTGGTTA+GGG | - | chr1_1:52189247-52189266 | None:intergenic | 40.0% |
| AAAACGCTTAATTGGACCAC+TGG | - | chr1_1:52189253-52189272 | None:intergenic | 40.0% | |
| ATGCGTGGAAAACGCTTAAT+TGG | - | chr1_1:52189261-52189280 | None:intergenic | 40.0% | |
| TTGGTCCAATTGTTAATGCG+TGG | - | chr1_1:52189276-52189295 | None:intergenic | 40.0% | |
| AACAATTGGACCAAAGTGGA+TGG | + | chr1_1:52189282-52189301 | Msa0027680:CDS | 40.0% | |
| ! | TGATTAGTTGGTTGAGGACT+TGG | + | chr1_1:52189436-52189455 | Msa0027680:intron | 40.0% |
| CTCCAATACCAACTTGAGAA+TGG | - | chr1_1:52189511-52189530 | None:intergenic | 40.0% | |
| TATGGCTGAACATCAAAGGT+TGG | + | chr1_1:52189565-52189584 | Msa0027680:CDS | 40.0% | |
| ! | ACACAAAGATTTGCTTTCCC+GGG | + | chr1_1:52189595-52189614 | Msa0027680:CDS | 40.0% |
| CAATCCTTGAGGATGATATG+AGG | + | chr1_1:52189621-52189640 | Msa0027680:CDS | 40.0% | |
| AAGCAAATAAGGTTGACGGT+AGG | + | chr1_1:52189651-52189670 | Msa0027680:CDS | 40.0% | |
| AGCAAATAAGGTTGACGGTA+GGG | + | chr1_1:52189652-52189671 | Msa0027680:CDS | 40.0% | |
| ! | TGATGAAGATGTTGGTGAAG+AGG | + | chr1_1:52189817-52189836 | Msa0027680:CDS | 40.0% |
| !! | GAAGGTTGATGATGAAGATG+TGG | + | chr1_1:52189874-52189893 | Msa0027680:CDS | 40.0% |
| TAAAGACAATGGGATGGAGT+TGG | + | chr1_1:52189925-52189944 | Msa0027680:CDS | 40.0% | |
| ! | GGAGTTGGATGATGATGATA+TGG | + | chr1_1:52189940-52189959 | Msa0027680:CDS | 40.0% |
| ! | GGAGTTTTTCCAATGCATGA+AGG | + | chr1_1:52190194-52190213 | Msa0027680:CDS | 40.0% |
| ! | GATTTAAAGGCACATCCTGA+AGG | + | chr1_1:52190527-52190546 | Msa0027680:CDS | 40.0% |
| AAGAAAACAGGCAGTGATGA+AGG | - | chr1_1:52190772-52190791 | None:intergenic | 40.0% | |
| ! | CACTGCCTAAAGGGAATTTT+AGG | - | chr1_1:52190935-52190954 | None:intergenic | 40.0% |
| CTAAAATTCCCTTTAGGCAG+TGG | + | chr1_1:52190933-52190952 | Msa0027680:intron | 40.0% | |
| ! | TGTGTTGTATTAGTTCGGTG+GGG | + | chr1_1:52190987-52191006 | Msa0027680:intron | 40.0% |
| !!! | TTTGTGTGGTTTTTTGTGCG+GGG | + | chr1_1:52191017-52191036 | Msa0027680:intron | 40.0% |
| CATACATTGTCCTCTTCCTA+TGG | - | chr1_1:52191260-52191279 | None:intergenic | 40.0% | |
| ACAGTGAAAGAAATGCCTCA+AGG | + | chr1_1:52191295-52191314 | Msa0027680:CDS | 40.0% | |
| !!! | ACAGAAAGTCCGTTTTGAAG+GGG | + | chr1_1:52191423-52191442 | Msa0027680:intron | 40.0% |
| ATTCCACTACCCCTTCAAAA+CGG | - | chr1_1:52191435-52191454 | None:intergenic | 40.0% | |
| ! | ATCTTCTTTGGAGGTTGTAG+TGG | + | chr1_1:52191495-52191514 | Msa0027680:CDS | 40.0% |
| GCTGTATATTTAGGGAATGC+GGG | - | chr1_1:52191862-52191881 | None:intergenic | 40.0% | |
| GGCTGTATATTTAGGGAATG+CGG | - | chr1_1:52191863-52191882 | None:intergenic | 40.0% | |
| TATATGGGTGCGTTTGTTTG+AGG | + | chr1_1:52192126-52192145 | Msa0027680:intron | 40.0% | |
| AAATGGTTCCCAGGAATCTA+AGG | + | chr1_1:52192156-52192175 | Msa0027680:intron | 40.0% | |
| TGTTCCCATCTACCAAACAA+TGG | - | chr1_1:52192197-52192216 | None:intergenic | 40.0% | |
| ACTTTCCCATCCTATTTGAC+AGG | - | chr1_1:52192309-52192328 | None:intergenic | 40.0% | |
| !! | GAGGTGATAAGCATTGGTTA+AGG | - | chr1_1:52192371-52192390 | None:intergenic | 40.0% |
| !!! | TTTTGGGATGATGGCCAATA+TGG | + | chr1_1:52192592-52192611 | Msa0027680:intron | 40.0% |
| ! | GATGATGGCCAATATGGAAA+GGG | + | chr1_1:52192598-52192617 | Msa0027680:intron | 40.0% |
| ! | AATCCTTCCTGAGTTCTAGT+CGG | - | chr1_1:52192681-52192700 | None:intergenic | 40.0% |
| CTCAGGAAGGATTAGAGTTT+AGG | + | chr1_1:52192688-52192707 | Msa0027680:intron | 40.0% | |
| AGTTTAGGCTCTTCATCAAC+AGG | + | chr1_1:52192703-52192722 | Msa0027680:intron | 40.0% | |
| !! | GAAATGTCGATGGTATTGAC+AGG | + | chr1_1:52192731-52192750 | Msa0027680:intron | 40.0% |
| !! | AATGTCGATGGTATTGACAG+GGG | + | chr1_1:52192733-52192752 | Msa0027680:intron | 40.0% |
| ! | TTTAGGGTGCGTTTGTTTGA+GGG | - | chr1_1:52192903-52192922 | None:intergenic | 40.0% |
| ! | ATTTAGGGTGCGTTTGTTTG+AGG | - | chr1_1:52192904-52192923 | None:intergenic | 40.0% |
| AACAAACGCACCCTAAATGT+TGG | + | chr1_1:52192906-52192925 | Msa0027680:intron | 40.0% | |
| ACAAACGCACCCTAAATGTT+GGG | + | chr1_1:52192907-52192926 | Msa0027680:intron | 40.0% | |
| GGAAAAAATTCCCGTGAGAT+CGG | - | chr1_1:52193050-52193069 | None:intergenic | 40.0% | |
| ACTTACAGGAGGATATCCTT+CGG | + | chr1_1:52193228-52193247 | Msa0027680:intron | 40.0% | |
| CAGTGAAATTGTTTGTCGTC+TGG | + | chr1_1:52193256-52193275 | Msa0027680:CDS | 40.0% | |
| ATACCCGCGGATTTATTGAT+CGG | + | chr1_1:52193329-52193348 | Msa0027680:CDS | 40.0% | |
| TAACCGATCAATAAATCCGC+GGG | - | chr1_1:52193335-52193354 | None:intergenic | 40.0% | |
| AATGCCCCGTACCAATAAGT+TGG | + | chr1_1:52188518-52188537 | Msa0027680:exon | 45.0% | |
| GAACATTGTCTGATGCGCAA+AGG | + | chr1_1:52188553-52188572 | Msa0027680:CDS | 45.0% | |
| AACTCCGTTCCGATATCTTG+TGG | + | chr1_1:52188590-52188609 | Msa0027680:CDS | 45.0% | |
| AAGCTGAAGGTCCTTCAAGA+AGG | + | chr1_1:52188855-52188874 | Msa0027680:CDS | 45.0% | |
| AGCTGAAGGTCCTTCAAGAA+GGG | + | chr1_1:52188856-52188875 | Msa0027680:CDS | 45.0% | |
| TCAATACCTGCAATACGGCT+GGG | - | chr1_1:52189118-52189137 | None:intergenic | 45.0% | |
| TTCAATACCTGCAATACGGC+TGG | - | chr1_1:52189119-52189138 | None:intergenic | 45.0% | |
| ! | GCTTAATTGGACCACTGGTT+AGG | - | chr1_1:52189248-52189267 | None:intergenic | 45.0% |
| AATTGGACCAAAGTGGATGG+AGG | + | chr1_1:52189285-52189304 | Msa0027680:CDS | 45.0% | |
| AACATGACCTCCATCCACTT+TGG | - | chr1_1:52189295-52189314 | None:intergenic | 45.0% | |
| GGTTCCAACACAACAAGACA+TGG | + | chr1_1:52189457-52189476 | Msa0027680:CDS | 45.0% | |
| GCCGTTAACCATTCTCAAGT+TGG | + | chr1_1:52189500-52189519 | Msa0027680:CDS | 45.0% | |
| ATCCTCAAGGATTGAAACCC+GGG | - | chr1_1:52189615-52189634 | None:intergenic | 45.0% | |
| CATCCTCAAGGATTGAAACC+CGG | - | chr1_1:52189616-52189635 | None:intergenic | 45.0% | |
| TATTCCGATGCCAAGTAGCA+TGG | + | chr1_1:52189679-52189698 | Msa0027680:CDS | 45.0% | |
| ! | ACTTCCATGCTACTTGGCAT+CGG | - | chr1_1:52189686-52189705 | None:intergenic | 45.0% |
| ATGCCAAGTAGCATGGAAGT+AGG | + | chr1_1:52189686-52189705 | Msa0027680:CDS | 45.0% | |
| CTTCCTACTTCCATGCTACT+TGG | - | chr1_1:52189692-52189711 | None:intergenic | 45.0% | |
| AGTAGCATGGAAGTAGGAAG+TGG | + | chr1_1:52189692-52189711 | Msa0027680:CDS | 45.0% | |
| GTAGCATGGAAGTAGGAAGT+GGG | + | chr1_1:52189693-52189712 | Msa0027680:CDS | 45.0% | |
| GGAAGTGGGTCAAAACATGT+AGG | + | chr1_1:52189707-52189726 | Msa0027680:CDS | 45.0% | |
| !! | TGATGGGTTGAAAAGTGAGG+CGG | + | chr1_1:52189760-52189779 | Msa0027680:CDS | 45.0% |
| CATGCATTGGAAAAACTCCC+CGG | - | chr1_1:52190193-52190212 | None:intergenic | 45.0% | |
| ! | TTTTCCAATGCATGAAGGCG+AGG | + | chr1_1:52190199-52190218 | Msa0027680:CDS | 45.0% |
| CATTGGAGTTTACGTCCTTC+AGG | - | chr1_1:52190545-52190564 | None:intergenic | 45.0% | |
| CTGAAGGACGTAAACTCCAA+TGG | + | chr1_1:52190543-52190562 | Msa0027680:CDS | 45.0% | |
| !! | GTAAACTCCAATGGACTGAG+CGG | + | chr1_1:52190552-52190571 | Msa0027680:CDS | 45.0% |
| TGAATTTCCGCTCAGTCCAT+TGG | - | chr1_1:52190562-52190581 | None:intergenic | 45.0% | |
| ! | TTCCCTTTAGGCAGTGGATT+TGG | + | chr1_1:52190939-52190958 | Msa0027680:intron | 45.0% |
| TGCCAAATCCACTGCCTAAA+GGG | - | chr1_1:52190944-52190963 | None:intergenic | 45.0% | |
| ATGCCAAATCCACTGCCTAA+AGG | - | chr1_1:52190945-52190964 | None:intergenic | 45.0% | |
| ! | GTGTTGTATTAGTTCGGTGG+GGG | + | chr1_1:52190988-52191007 | Msa0027680:intron | 45.0% |
| ! | TGTTGTATTAGTTCGGTGGG+GGG | + | chr1_1:52190989-52191008 | Msa0027680:intron | 45.0% |
| CATGTTACGTGTTGGACCAT+AGG | + | chr1_1:52191241-52191260 | Msa0027680:CDS | 45.0% | |
| GAAGAGGACAATGTATGTGC+TGG | + | chr1_1:52191263-52191282 | Msa0027680:CDS | 45.0% | |
| ATTATCCAAACGCTGCCTTG+AGG | - | chr1_1:52191313-52191332 | None:intergenic | 45.0% | |
| GCAGCGTTTGGATAATGCAA+TGG | + | chr1_1:52191317-52191336 | Msa0027680:CDS | 45.0% | |
| ! | TTCTTTGGAGGTTGTAGTGG+TGG | + | chr1_1:52191498-52191517 | Msa0027680:CDS | 45.0% |
| AAGTACTTGGAGTTGTGGGA+TGG | + | chr1_1:52191660-52191679 | Msa0027680:CDS | 45.0% | |
| TGTGGGATGGTGAAGCAAAA+TGG | + | chr1_1:52191673-52191692 | Msa0027680:CDS | 45.0% | |
| GTGGGATGGTGAAGCAAAAT+GGG | + | chr1_1:52191674-52191693 | Msa0027680:CDS | 45.0% | |
| TGGGATGGTGAAGCAAAATG+GGG | + | chr1_1:52191675-52191694 | Msa0027680:CDS | 45.0% | |
| GAGTATGCCCGACTATTCAT+TGG | + | chr1_1:52191704-52191723 | Msa0027680:CDS | 45.0% | |
| GTATATTTAGGGAATGCGGG+AGG | - | chr1_1:52191859-52191878 | None:intergenic | 45.0% | |
| GATGGGAAAGTTTGATTCCC+AGG | + | chr1_1:52192318-52192337 | Msa0027680:intron | 45.0% | |
| !! | GCATTGGTTAAGGGCAGAAT+TGG | - | chr1_1:52192361-52192380 | None:intergenic | 45.0% |
| ! | GGATGATGGCCAATATGGAA+AGG | + | chr1_1:52192597-52192616 | Msa0027680:intron | 45.0% |
| ! | AGAACCTGGTTTGTCTAGCA+GGG | + | chr1_1:52192639-52192658 | Msa0027680:intron | 45.0% |
| TAATCCCTGCTAGACAAACC+AGG | - | chr1_1:52192646-52192665 | None:intergenic | 45.0% | |
| ACACTCCTACAACTAAGTCC+CGG | - | chr1_1:52192995-52193014 | None:intergenic | 45.0% | |
| CAATTTCACTGCGAATCCGA+AGG | - | chr1_1:52193247-52193266 | None:intergenic | 45.0% | |
| AGATACTGCAAAGATACCCG+CGG | + | chr1_1:52193316-52193335 | Msa0027680:CDS | 45.0% | |
| !! | AATCTAAATTAAAAAAAAAA+AGG | - | chr1_1:52190261-52190280 | None:intergenic | 5.0% |
| !!! | TAAATTTTATCATTAAAATT+AGG | + | chr1_1:52191185-52191204 | Msa0027680:intron | 5.0% |
| !! | AAATTTAAAAATTTCAAATT+AGG | - | chr1_1:52191610-52191629 | None:intergenic | 5.0% |
| AGGTGGGATGCAAGTAGCTT+AGG | + | chr1_1:52188666-52188685 | Msa0027680:CDS | 50.0% | |
| TAGAGTAGGCGTTAGGACTG+TGG | + | chr1_1:52188692-52188711 | Msa0027680:CDS | 50.0% | |
| GCTGAAGGTCCTTCAAGAAG+GGG | + | chr1_1:52188857-52188876 | Msa0027680:CDS | 50.0% | |
| CTACGTTGTCCCCTTCTTGA+AGG | - | chr1_1:52188869-52188888 | None:intergenic | 50.0% | |
| TTCCCGGGTTTCAATCCTTG+AGG | + | chr1_1:52189610-52189629 | Msa0027680:CDS | 50.0% | |
| !! | GATGGGTTGAAAAGTGAGGC+GGG | + | chr1_1:52189761-52189780 | Msa0027680:CDS | 50.0% |
| GTAGATGAGTTGCGTGTTGC+CGG | + | chr1_1:52190171-52190190 | Msa0027680:CDS | 50.0% | |
| TAGATGAGTTGCGTGTTGCC+GGG | + | chr1_1:52190172-52190191 | Msa0027680:CDS | 50.0% | |
| ACTTCCTCGCCTTCATGCAT+TGG | - | chr1_1:52190206-52190225 | None:intergenic | 50.0% | |
| AATGCATGAAGGCGAGGAAG+TGG | + | chr1_1:52190205-52190224 | Msa0027680:CDS | 50.0% | |
| ATGCATGAAGGCGAGGAAGT+GGG | + | chr1_1:52190206-52190225 | Msa0027680:CDS | 50.0% | |
| TCAAGTGTCTTGGTCCAACG+AGG | - | chr1_1:52190596-52190615 | None:intergenic | 50.0% | |
| TCGTTGGACCAAGACACTTG+AGG | + | chr1_1:52190595-52190614 | Msa0027680:CDS | 50.0% | |
| ! | AGGCAGTGGATTTGGCATTG+TGG | + | chr1_1:52190947-52190966 | Msa0027680:intron | 50.0% |
| GCGGGGTTTACGCTTATGTT+TGG | + | chr1_1:52191034-52191053 | Msa0027680:intron | 50.0% | |
| TATTAGGCAGAGTCGTCGCA+AGG | - | chr1_1:52191099-52191118 | None:intergenic | 50.0% | |
| TGTCCAGTGGTCTTCGAACT+GGG | - | chr1_1:52191223-52191242 | None:intergenic | 50.0% | |
| ATGTCCAGTGGTCTTCGAAC+TGG | - | chr1_1:52191224-52191243 | None:intergenic | 50.0% | |
| CCAACACGTAACATGTCCAG+TGG | - | chr1_1:52191236-52191255 | None:intergenic | 50.0% | |
| CCACTGGACATGTTACGTGT+TGG | + | chr1_1:52191233-52191252 | Msa0027680:CDS | 50.0% | |
| ACGTGTTGGACCATAGGAAG+AGG | + | chr1_1:52191247-52191266 | Msa0027680:CDS | 50.0% | |
| AAATGCCTCAAGGCAGCGTT+TGG | + | chr1_1:52191305-52191324 | Msa0027680:CDS | 50.0% | |
| !!! | AGTCCGTTTTGAAGGGGTAG+TGG | + | chr1_1:52191429-52191448 | Msa0027680:CDS | 50.0% |
| GGGATGGTGAAGCAAAATGG+GGG | + | chr1_1:52191676-52191695 | Msa0027680:CDS | 50.0% | |
| !! | GGAGGAGTGTGCCGTATTTT+TGG | + | chr1_1:52192042-52192061 | Msa0027680:intron | 50.0% |
| ! | GGTTCCCAGGAATCTAAGGT+TGG | + | chr1_1:52192160-52192179 | Msa0027680:intron | 50.0% |
| GCAAAACGTGGGTCAAACGT+CGG | - | chr1_1:52192275-52192294 | None:intergenic | 50.0% | |
| ! | GAGAACCTGGTTTGTCTAGC+AGG | + | chr1_1:52192638-52192657 | Msa0027680:intron | 50.0% |
| ! | ATCCACACCGACTAGAACTC+AGG | + | chr1_1:52192671-52192690 | Msa0027680:intron | 50.0% |
| ! | TTCCTGAGTTCTAGTCGGTG+TGG | - | chr1_1:52192676-52192695 | None:intergenic | 50.0% |
| ! | ACACCGACTAGAACTCAGGA+AGG | + | chr1_1:52192675-52192694 | Msa0027680:intron | 50.0% |
| TTCCTGGGAAAGCTAATCCC+AGG | + | chr1_1:52192863-52192882 | Msa0027680:intron | 50.0% | |
| !! | TACCTGGGATTAGCTTTCCC+AGG | - | chr1_1:52192868-52192887 | None:intergenic | 50.0% |
| CATTCCCGGGACTTAGTTGT+AGG | + | chr1_1:52192987-52193006 | Msa0027680:intron | 50.0% | |
| CACTCCTACAACTAAGTCCC+GGG | - | chr1_1:52192994-52193013 | None:intergenic | 50.0% | |
| GGGACTTAGTTGTAGGAGTG+TGG | + | chr1_1:52192994-52193013 | Msa0027680:intron | 50.0% | |
| AGATGAGTTGCGTGTTGCCG+GGG | + | chr1_1:52190173-52190192 | Msa0027680:CDS | 55.0% | |
| !! | CCAAGACACTTGAGGCGTTG+CGG | + | chr1_1:52190603-52190622 | Msa0027680:CDS | 55.0% |
| ! | GTATTAGTTCGGTGGGGGGT+TGG | + | chr1_1:52190993-52191012 | Msa0027680:intron | 55.0% |
| CAGTGGTCTTCGAACTGGGT+TGG | - | chr1_1:52191219-52191238 | None:intergenic | 55.0% | |
| CAACCCAGTTCGAAGACCAC+TGG | + | chr1_1:52191217-52191236 | Msa0027680:CDS | 55.0% | |
| TGGTTGCCCAGCCGTATTGC+AGG | + | chr1_1:52189109-52189128 | Msa0027680:CDS | 60.0% | |
| CCGCAACGCCTCAAGTGTCT+TGG | - | chr1_1:52190606-52190625 | None:intergenic | 60.0% | |
| !!! | GGTGGGGGGTTGGTTTTGTG+TGG | + | chr1_1:52191003-52191022 | Msa0027680:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 52188415 | 52193596 | 52188415 | ID=Msa0027680;Name=Msa0027680 |
| chr1_1 | mRNA | 52188415 | 52193596 | 52188415 | ID=Msa0027680-mRNA-1;Parent=Msa0027680;Name=Msa0027680-mRNA-1;_AED=0.08;_eAED=0.08;_QI=104|0.77|0.7|1|1|1|10|241|695 |
| chr1_1 | exon | 52188415 | 52189130 | 52188415 | ID=Msa0027680-mRNA-1:exon:15322;Parent=Msa0027680-mRNA-1 |
| chr1_1 | exon | 52189222 | 52189344 | 52189222 | ID=Msa0027680-mRNA-1:exon:15323;Parent=Msa0027680-mRNA-1 |
| chr1_1 | exon | 52189443 | 52190050 | 52189443 | ID=Msa0027680-mRNA-1:exon:15324;Parent=Msa0027680-mRNA-1 |
| chr1_1 | exon | 52190158 | 52190227 | 52190158 | ID=Msa0027680-mRNA-1:exon:15325;Parent=Msa0027680-mRNA-1 |
| chr1_1 | exon | 52190333 | 52190422 | 52190333 | ID=Msa0027680-mRNA-1:exon:15326;Parent=Msa0027680-mRNA-1 |
| chr1_1 | exon | 52190512 | 52190637 | 52190512 | ID=Msa0027680-mRNA-1:exon:15327;Parent=Msa0027680-mRNA-1 |
| chr1_1 | exon | 52191207 | 52191338 | 52191207 | ID=Msa0027680-mRNA-1:exon:15328;Parent=Msa0027680-mRNA-1 |
| chr1_1 | exon | 52191427 | 52191542 | 52191427 | ID=Msa0027680-mRNA-1:exon:15329;Parent=Msa0027680-mRNA-1 |
| chr1_1 | exon | 52191635 | 52191725 | 52191635 | ID=Msa0027680-mRNA-1:exon:15330;Parent=Msa0027680-mRNA-1 |
| chr1_1 | exon | 52193236 | 52193596 | 52193236 | ID=Msa0027680-mRNA-1:exon:15331;Parent=Msa0027680-mRNA-1 |
| chr1_1 | five_prime_UTR | 52188415 | 52188518 | 52188415 | ID=Msa0027680-mRNA-1:five_prime_utr;Parent=Msa0027680-mRNA-1 |
| chr1_1 | CDS | 52188519 | 52189130 | 52188519 | ID=Msa0027680-mRNA-1:cds;Parent=Msa0027680-mRNA-1 |
| chr1_1 | CDS | 52189222 | 52189344 | 52189222 | ID=Msa0027680-mRNA-1:cds;Parent=Msa0027680-mRNA-1 |
| chr1_1 | CDS | 52189443 | 52190050 | 52189443 | ID=Msa0027680-mRNA-1:cds;Parent=Msa0027680-mRNA-1 |
| chr1_1 | CDS | 52190158 | 52190227 | 52190158 | ID=Msa0027680-mRNA-1:cds;Parent=Msa0027680-mRNA-1 |
| chr1_1 | CDS | 52190333 | 52190422 | 52190333 | ID=Msa0027680-mRNA-1:cds;Parent=Msa0027680-mRNA-1 |
| chr1_1 | CDS | 52190512 | 52190637 | 52190512 | ID=Msa0027680-mRNA-1:cds;Parent=Msa0027680-mRNA-1 |
| chr1_1 | CDS | 52191207 | 52191338 | 52191207 | ID=Msa0027680-mRNA-1:cds;Parent=Msa0027680-mRNA-1 |
| chr1_1 | CDS | 52191427 | 52191542 | 52191427 | ID=Msa0027680-mRNA-1:cds;Parent=Msa0027680-mRNA-1 |
| chr1_1 | CDS | 52191635 | 52191725 | 52191635 | ID=Msa0027680-mRNA-1:cds;Parent=Msa0027680-mRNA-1 |
| chr1_1 | CDS | 52193236 | 52193355 | 52193236 | ID=Msa0027680-mRNA-1:cds;Parent=Msa0027680-mRNA-1 |
| chr1_1 | three_prime_UTR | 52193356 | 52193596 | 52193356 | ID=Msa0027680-mRNA-1:three_prime_utr;Parent=Msa0027680-mRNA-1 |
| Gene Sequence |
| Protein sequence |
