Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0824650 | RHN57942.1 | 89.908 | 109 | 11 | 0 | 1 | 109 | 2 | 110 | 3.68e-47 | 157 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0824650 | A0A396HX91 | 89.908 | 109 | 11 | 0 | 1 | 109 | 2 | 110 | 1.76e-47 | 157 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0743740 | Msa0824650 | 0.855494 | 6.076920e-62 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0824650 | MtrunA17_Chr5g0445801 | 89.908 | 109 | 11 | 0 | 1 | 109 | 2 | 110 | 3.38e-51 | 157 |
| Msa0824650 | MtrunA17_Chr5g0445821 | 67.273 | 110 | 31 | 2 | 1 | 109 | 2 | 107 | 1.01e-41 | 133 |
| Msa0824650 | MtrunA17_Chr5g0445851 | 62.281 | 114 | 36 | 2 | 1 | 109 | 2 | 113 | 1.73e-22 | 84.3 |
| Msa0824650 | MtrunA17_Chr5g0445871 | 53.271 | 107 | 43 | 3 | 4 | 108 | 104 | 205 | 2.56e-19 | 79.0 |
| Msa0824650 | MtrunA17_Chr5g0445771 | 57.547 | 106 | 37 | 3 | 4 | 109 | 407 | 504 | 1.41e-17 | 76.6 |
| Msa0824650 | MtrunA17_Chr5g0445881 | 54.054 | 111 | 43 | 3 | 4 | 108 | 360 | 468 | 1.08e-15 | 71.2 |
| Msa0824650 | MtrunA17_Chr5g0434151 | 53.704 | 54 | 20 | 1 | 4 | 57 | 26 | 74 | 2.33e-12 | 58.5 |
| Msa0824650 | MtrunA17_Chr5g0446181 | 42.056 | 107 | 41 | 5 | 4 | 109 | 285 | 371 | 1.44e-11 | 59.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 16 sgRNAs with CRISPR-Local
Find 226 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATGAAATGAATGCTATTTA+TGG | 0.157301 | 5_3:+64064364 | Msa0824650:CDS |
| GTTAACCGCATTTGCAAACT+TGG | 0.363844 | 5_3:-64064446 | None:intergenic |
| GGGAACAGTGAACATGAAAA+AGG | 0.418775 | 5_3:+64064276 | Msa0824650:CDS |
| CATCGTTGTTGTCGTTATCA+AGG | 0.462013 | 5_3:-64064315 | None:intergenic |
| ATCATCAGAGGAAGAAGAAG+TGG | 0.517134 | 5_3:-64064509 | None:intergenic |
| GCTAGTGATGAACTTGGAGT+TGG | 0.533733 | 5_3:-64064409 | None:intergenic |
| ACGACAACAACGATGATGAA+TGG | 0.543622 | 5_3:+64064323 | Msa0824650:CDS |
| TTCTTGATAATCTTACAAGA+AGG | 0.548649 | 5_3:+64064539 | Msa0824650:CDS |
| TGAACTGCTAGTGATGAACT+TGG | 0.561399 | 5_3:-64064415 | None:intergenic |
| AGGAACCAAGTTTGCAAATG+CGG | 0.569154 | 5_3:+64064441 | Msa0824650:CDS |
| ATCAGAGGAAGAAGAAGTGG+AGG | 0.583434 | 5_3:-64064506 | None:intergenic |
| TGGAATTGCTGTGAAGAATG+AGG | 0.597222 | 5_3:+64064384 | Msa0824650:CDS |
| TCATCACTAGCAGTTCAACT+AGG | 0.607456 | 5_3:+64064421 | Msa0824650:CDS |
| AAGAAACAATGAATCATCAG+AGG | 0.630095 | 5_3:-64064521 | None:intergenic |
| GATGAATGGTGTATGTCTCA+AGG | 0.659079 | 5_3:+64064337 | Msa0824650:CDS |
| TAATCTTACAAGAAGGTCTG+CGG | 0.693035 | 5_3:+64064546 | Msa0824650:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATATATATATATATATTT+TGG | + | chr5_3:64064107-64064126 | Msa0824650:intron | 0.0% |
| !!! | ATATATATATATATATATTT+TGG | + | chr5_3:64064107-64064126 | Msa0824650:intron | 0.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | + | chr5_3:64063713-64063732 | Msa0824650:intron | 100.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | + | chr5_3:64063713-64063732 | Msa0824650:intron | 100.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | + | chr5_3:64063713-64063732 | Msa0824650:intron | 100.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | + | chr5_3:64063713-64063732 | Msa0824650:intron | 100.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | + | chr5_3:64063713-64063732 | Msa0824650:intron | 100.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | + | chr5_3:64063713-64063732 | Msa0824650:intron | 100.0% |
| !! | TAATTATAGATATTTCAATG+TGG | - | chr5_3:64063210-64063229 | None:intergenic | 15.0% |
| !! | AAAAAGAAACAACTTAAAAA+TGG | - | chr5_3:64063972-64063991 | None:intergenic | 15.0% |
| !! | TATTCAAATGAAAATATAGT+TGG | - | chr5_3:64064157-64064176 | None:intergenic | 15.0% |
| !!! | TAATATATCTCTTTTATGTT+AGG | + | chr5_3:64064250-64064269 | Msa0824650:intron | 15.0% |
| !! | TAATTATAGATATTTCAATG+TGG | - | chr5_3:64063210-64063229 | None:intergenic | 15.0% |
| !! | AAAAAGAAACAACTTAAAAA+TGG | - | chr5_3:64063972-64063991 | None:intergenic | 15.0% |
| !! | TATTCAAATGAAAATATAGT+TGG | - | chr5_3:64064157-64064176 | None:intergenic | 15.0% |
| !!! | TAATATATCTCTTTTATGTT+AGG | + | chr5_3:64064250-64064269 | Msa0824650:intron | 15.0% |
| !!! | AAGATTTTCACTATATTTCT+TGG | - | chr5_3:64063867-64063886 | None:intergenic | 20.0% |
| !!! | TGAAAATCTTGTTAGATTTT+AGG | + | chr5_3:64063877-64063896 | Msa0824650:intron | 20.0% |
| !!! | GTTTTTCATTTTTGAGTTTT+GGG | - | chr5_3:64064002-64064021 | None:intergenic | 20.0% |
| !!! | AAGATTTTCACTATATTTCT+TGG | - | chr5_3:64063867-64063886 | None:intergenic | 20.0% |
| !!! | TGAAAATCTTGTTAGATTTT+AGG | + | chr5_3:64063877-64063896 | Msa0824650:intron | 20.0% |
| !!! | GTTTTTCATTTTTGAGTTTT+GGG | - | chr5_3:64064002-64064021 | None:intergenic | 20.0% |
| ! | TGAATATATATCTTTCCAAG+TGG | - | chr5_3:64063506-64063525 | None:intergenic | 25.0% |
| ! | GAAATGTTAGTAACTAGAAT+AGG | + | chr5_3:64063532-64063551 | Msa0824650:intron | 25.0% |
| !! | TTTCTCTTCAAGTTTATCAT+AGG | - | chr5_3:64063812-64063831 | None:intergenic | 25.0% |
| !! | TTAGACTCATTTTCTTTTCA+TGG | - | chr5_3:64063842-64063861 | None:intergenic | 25.0% |
| !!! | CGTTTTTCATTTTTGAGTTT+TGG | - | chr5_3:64064003-64064022 | None:intergenic | 25.0% |
| !!! | AACTCATTTTGGTTTTTCTT+AGG | + | chr5_3:64064042-64064061 | Msa0824650:intron | 25.0% |
| !! | TATCTCTTTTATGTTAGGTA+AGG | + | chr5_3:64064255-64064274 | Msa0824650:intron | 25.0% |
| !! | ATCTCTTTTATGTTAGGTAA+GGG | + | chr5_3:64064256-64064275 | Msa0824650:intron | 25.0% |
| !! | CATGAAATGAATGCTATTTA+TGG | + | chr5_3:64064364-64064383 | Msa0824650:CDS | 25.0% |
| !! | TTCTTGATAATCTTACAAGA+AGG | + | chr5_3:64064539-64064558 | Msa0824650:CDS | 25.0% |
| ! | TGAATATATATCTTTCCAAG+TGG | - | chr5_3:64063506-64063525 | None:intergenic | 25.0% |
| ! | GAAATGTTAGTAACTAGAAT+AGG | + | chr5_3:64063532-64063551 | Msa0824650:intron | 25.0% |
| !! | TTTCTCTTCAAGTTTATCAT+AGG | - | chr5_3:64063812-64063831 | None:intergenic | 25.0% |
| !! | TTAGACTCATTTTCTTTTCA+TGG | - | chr5_3:64063842-64063861 | None:intergenic | 25.0% |
| !!! | CGTTTTTCATTTTTGAGTTT+TGG | - | chr5_3:64064003-64064022 | None:intergenic | 25.0% |
| !!! | AACTCATTTTGGTTTTTCTT+AGG | + | chr5_3:64064042-64064061 | Msa0824650:intron | 25.0% |
| !! | TATCTCTTTTATGTTAGGTA+AGG | + | chr5_3:64064255-64064274 | Msa0824650:intron | 25.0% |
| !! | ATCTCTTTTATGTTAGGTAA+GGG | + | chr5_3:64064256-64064275 | Msa0824650:intron | 25.0% |
| !! | CATGAAATGAATGCTATTTA+TGG | + | chr5_3:64064364-64064383 | Msa0824650:CDS | 25.0% |
| !! | TTCTTGATAATCTTACAAGA+AGG | + | chr5_3:64064539-64064558 | Msa0824650:CDS | 25.0% |
| ! | TCCTAAAACATTTTATCCAC+CGG | - | chr5_3:64063135-64063154 | None:intergenic | 30.0% |
| GTGTTATAATTTCTTTGAGC+TGG | + | chr5_3:64063159-64063178 | Msa0824650:intron | 30.0% | |
| CAATTAGCACTTGGATATTA+TGG | + | chr5_3:64063258-64063277 | Msa0824650:intron | 30.0% | |
| ! | AGCTGAATATGATTTTCCTA+TGG | + | chr5_3:64063353-64063372 | Msa0824650:intron | 30.0% |
| ! | AATGCTACTTCTATTTCCAT+AGG | - | chr5_3:64063372-64063391 | None:intergenic | 30.0% |
| ! | ATTTGTTTGAGGTAAAGTTC+TGG | - | chr5_3:64063397-64063416 | None:intergenic | 30.0% |
| ACTTTACCTCAAACAAATCT+TGG | + | chr5_3:64063399-64063418 | Msa0824650:intron | 30.0% | |
| ! | TTAGAACCAAGATTTGTTTG+AGG | - | chr5_3:64063408-64063427 | None:intergenic | 30.0% |
| !! | TCAAACAAATCTTGGTTCTA+AGG | + | chr5_3:64063407-64063426 | Msa0824650:intron | 30.0% |
| !! | CAAACAAATCTTGGTTCTAA+GGG | + | chr5_3:64063408-64063427 | Msa0824650:intron | 30.0% |
| TCAAATCAATTCATTATGGC+AGG | - | chr5_3:64063443-64063462 | None:intergenic | 30.0% | |
| CACGTCAAATCAATTCATTA+TGG | - | chr5_3:64063447-64063466 | None:intergenic | 30.0% | |
| !! | TGAATTGATTTGACGTGTAT+TGG | + | chr5_3:64063450-64063469 | Msa0824650:intron | 30.0% |
| ! | ACTCATTTTCTTTTCATGGA+CGG | - | chr5_3:64063838-64063857 | None:intergenic | 30.0% |
| ATGAAAAACGAAACAAAAGC+AGG | + | chr5_3:64064013-64064032 | Msa0824650:intron | 30.0% | |
| AAGCAAAAACATGGAAACTA+AGG | - | chr5_3:64064193-64064212 | None:intergenic | 30.0% | |
| ATAACACTCAAGCAAAAACA+TGG | - | chr5_3:64064202-64064221 | None:intergenic | 30.0% | |
| AAGAAACAATGAATCATCAG+AGG | - | chr5_3:64064524-64064543 | None:intergenic | 30.0% | |
| ! | TCCTAAAACATTTTATCCAC+CGG | - | chr5_3:64063135-64063154 | None:intergenic | 30.0% |
| GTGTTATAATTTCTTTGAGC+TGG | + | chr5_3:64063159-64063178 | Msa0824650:intron | 30.0% | |
| CAATTAGCACTTGGATATTA+TGG | + | chr5_3:64063258-64063277 | Msa0824650:intron | 30.0% | |
| ! | AGCTGAATATGATTTTCCTA+TGG | + | chr5_3:64063353-64063372 | Msa0824650:intron | 30.0% |
| ! | AATGCTACTTCTATTTCCAT+AGG | - | chr5_3:64063372-64063391 | None:intergenic | 30.0% |
| ! | ATTTGTTTGAGGTAAAGTTC+TGG | - | chr5_3:64063397-64063416 | None:intergenic | 30.0% |
| ACTTTACCTCAAACAAATCT+TGG | + | chr5_3:64063399-64063418 | Msa0824650:intron | 30.0% | |
| ! | TTAGAACCAAGATTTGTTTG+AGG | - | chr5_3:64063408-64063427 | None:intergenic | 30.0% |
| !! | TCAAACAAATCTTGGTTCTA+AGG | + | chr5_3:64063407-64063426 | Msa0824650:intron | 30.0% |
| !! | CAAACAAATCTTGGTTCTAA+GGG | + | chr5_3:64063408-64063427 | Msa0824650:intron | 30.0% |
| TCAAATCAATTCATTATGGC+AGG | - | chr5_3:64063443-64063462 | None:intergenic | 30.0% | |
| CACGTCAAATCAATTCATTA+TGG | - | chr5_3:64063447-64063466 | None:intergenic | 30.0% | |
| !! | TGAATTGATTTGACGTGTAT+TGG | + | chr5_3:64063450-64063469 | Msa0824650:intron | 30.0% |
| ! | ACTCATTTTCTTTTCATGGA+CGG | - | chr5_3:64063838-64063857 | None:intergenic | 30.0% |
| ATGAAAAACGAAACAAAAGC+AGG | + | chr5_3:64064013-64064032 | Msa0824650:intron | 30.0% | |
| AAGCAAAAACATGGAAACTA+AGG | - | chr5_3:64064193-64064212 | None:intergenic | 30.0% | |
| ATAACACTCAAGCAAAAACA+TGG | - | chr5_3:64064202-64064221 | None:intergenic | 30.0% | |
| AAGAAACAATGAATCATCAG+AGG | - | chr5_3:64064524-64064543 | None:intergenic | 30.0% | |
| ATAATTTCTTTGAGCTGGTG+AGG | + | chr5_3:64063164-64063183 | Msa0824650:intron | 35.0% | |
| ACAGAAACTCAATTAGCACT+TGG | + | chr5_3:64063249-64063268 | Msa0824650:intron | 35.0% | |
| !!! | AAGCTTTTTCATTCCTCTCT+CGG | + | chr5_3:64063302-64063321 | Msa0824650:intron | 35.0% |
| AAAAGAGAGCCATGGAATAA+AGG | - | chr5_3:64063333-64063352 | None:intergenic | 35.0% | |
| AACCCAAGATGAACATTCAA+GGG | + | chr5_3:64063776-64063795 | Msa0824650:intron | 35.0% | |
| ATCCCTTGAATGTTCATCTT+GGG | - | chr5_3:64063781-64063800 | None:intergenic | 35.0% | |
| TATCCCTTGAATGTTCATCT+TGG | - | chr5_3:64063782-64063801 | None:intergenic | 35.0% | |
| AAGATGAACATTCAAGGGAT+AGG | + | chr5_3:64063781-64063800 | Msa0824650:intron | 35.0% | |
| ! | GCAGGTAACAAAACTCATTT+TGG | + | chr5_3:64064031-64064050 | Msa0824650:intron | 35.0% |
| TCTTAGGTAAACATGATCAC+AGG | + | chr5_3:64064058-64064077 | Msa0824650:intron | 35.0% | |
| TGCTTGAGTGTTATCATGTT+TGG | + | chr5_3:64064208-64064227 | Msa0824650:intron | 35.0% | |
| TAATCTTACAAGAAGGTCTG+CGG | + | chr5_3:64064546-64064565 | Msa0824650:CDS | 35.0% | |
| ATAATTTCTTTGAGCTGGTG+AGG | + | chr5_3:64063164-64063183 | Msa0824650:intron | 35.0% | |
| ACAGAAACTCAATTAGCACT+TGG | + | chr5_3:64063249-64063268 | Msa0824650:intron | 35.0% | |
| !!! | AAGCTTTTTCATTCCTCTCT+CGG | + | chr5_3:64063302-64063321 | Msa0824650:intron | 35.0% |
| AAAAGAGAGCCATGGAATAA+AGG | - | chr5_3:64063333-64063352 | None:intergenic | 35.0% | |
| AACCCAAGATGAACATTCAA+GGG | + | chr5_3:64063776-64063795 | Msa0824650:intron | 35.0% | |
| ATCCCTTGAATGTTCATCTT+GGG | - | chr5_3:64063781-64063800 | None:intergenic | 35.0% | |
| TATCCCTTGAATGTTCATCT+TGG | - | chr5_3:64063782-64063801 | None:intergenic | 35.0% | |
| AAGATGAACATTCAAGGGAT+AGG | + | chr5_3:64063781-64063800 | Msa0824650:intron | 35.0% | |
| ! | GCAGGTAACAAAACTCATTT+TGG | + | chr5_3:64064031-64064050 | Msa0824650:intron | 35.0% |
| TCTTAGGTAAACATGATCAC+AGG | + | chr5_3:64064058-64064077 | Msa0824650:intron | 35.0% | |
| TGCTTGAGTGTTATCATGTT+TGG | + | chr5_3:64064208-64064227 | Msa0824650:intron | 35.0% | |
| TAATCTTACAAGAAGGTCTG+CGG | + | chr5_3:64064546-64064565 | Msa0824650:CDS | 35.0% | |
| ! | GCCGGTGGATAAAATGTTTT+AGG | + | chr5_3:64063131-64063150 | Msa0824650:intron | 40.0% |
| ATTCAGCTAAAAGAGAGCCA+TGG | - | chr5_3:64063341-64063360 | None:intergenic | 40.0% | |
| !! | GTTGTAGAGCAAACTTGTTG+AGG | + | chr5_3:64063477-64063496 | Msa0824650:intron | 40.0% |
| GTCGTAACAACCACTTTCTT+CGG | - | chr5_3:64063634-64063653 | None:intergenic | 40.0% | |
| AAGAAAGTGGTTGTTACGAC+AGG | + | chr5_3:64063634-64063653 | Msa0824650:intron | 40.0% | |
| ! | TTGTTACGACAGGTTCTAGT+GGG | + | chr5_3:64063644-64063663 | Msa0824650:intron | 40.0% |
| ! | TTGTAGCGTCGAAATGATAG+TGG | + | chr5_3:64063676-64063695 | Msa0824650:intron | 40.0% |
| GTTGATTGCATGGCTTACTT+TGG | - | chr5_3:64063759-64063778 | None:intergenic | 40.0% | |
| !! | TTCATCTTGGGTTGATTGCA+TGG | - | chr5_3:64063769-64063788 | None:intergenic | 40.0% |
| CAACCCAAGATGAACATTCA+AGG | + | chr5_3:64063775-64063794 | Msa0824650:intron | 40.0% | |
| GGGAACAGTGAACATGAAAA+AGG | + | chr5_3:64064276-64064295 | Msa0824650:CDS | 40.0% | |
| CATCGTTGTTGTCGTTATCA+AGG | - | chr5_3:64064318-64064337 | None:intergenic | 40.0% | |
| ACGACAACAACGATGATGAA+TGG | + | chr5_3:64064323-64064342 | Msa0824650:CDS | 40.0% | |
| GATGAATGGTGTATGTCTCA+AGG | + | chr5_3:64064337-64064356 | Msa0824650:CDS | 40.0% | |
| TGGAATTGCTGTGAAGAATG+AGG | + | chr5_3:64064384-64064403 | Msa0824650:CDS | 40.0% | |
| TGAACTGCTAGTGATGAACT+TGG | - | chr5_3:64064418-64064437 | None:intergenic | 40.0% | |
| TCATCACTAGCAGTTCAACT+AGG | + | chr5_3:64064421-64064440 | Msa0824650:CDS | 40.0% | |
| AGGAACCAAGTTTGCAAATG+CGG | + | chr5_3:64064441-64064460 | Msa0824650:CDS | 40.0% | |
| GTTAACCGCATTTGCAAACT+TGG | - | chr5_3:64064449-64064468 | None:intergenic | 40.0% | |
| ATCATCAGAGGAAGAAGAAG+TGG | - | chr5_3:64064512-64064531 | None:intergenic | 40.0% | |
| ! | GCCGGTGGATAAAATGTTTT+AGG | + | chr5_3:64063131-64063150 | Msa0824650:intron | 40.0% |
| ATTCAGCTAAAAGAGAGCCA+TGG | - | chr5_3:64063341-64063360 | None:intergenic | 40.0% | |
| !! | GTTGTAGAGCAAACTTGTTG+AGG | + | chr5_3:64063477-64063496 | Msa0824650:intron | 40.0% |
| GTCGTAACAACCACTTTCTT+CGG | - | chr5_3:64063634-64063653 | None:intergenic | 40.0% | |
| AAGAAAGTGGTTGTTACGAC+AGG | + | chr5_3:64063634-64063653 | Msa0824650:intron | 40.0% | |
| ! | TTGTTACGACAGGTTCTAGT+GGG | + | chr5_3:64063644-64063663 | Msa0824650:intron | 40.0% |
| ! | TTGTAGCGTCGAAATGATAG+TGG | + | chr5_3:64063676-64063695 | Msa0824650:intron | 40.0% |
| GTTGATTGCATGGCTTACTT+TGG | - | chr5_3:64063759-64063778 | None:intergenic | 40.0% | |
| !! | TTCATCTTGGGTTGATTGCA+TGG | - | chr5_3:64063769-64063788 | None:intergenic | 40.0% |
| CAACCCAAGATGAACATTCA+AGG | + | chr5_3:64063775-64063794 | Msa0824650:intron | 40.0% | |
| GGGAACAGTGAACATGAAAA+AGG | + | chr5_3:64064276-64064295 | Msa0824650:CDS | 40.0% | |
| CATCGTTGTTGTCGTTATCA+AGG | - | chr5_3:64064318-64064337 | None:intergenic | 40.0% | |
| ACGACAACAACGATGATGAA+TGG | + | chr5_3:64064323-64064342 | Msa0824650:CDS | 40.0% | |
| GATGAATGGTGTATGTCTCA+AGG | + | chr5_3:64064337-64064356 | Msa0824650:CDS | 40.0% | |
| TGGAATTGCTGTGAAGAATG+AGG | + | chr5_3:64064384-64064403 | Msa0824650:CDS | 40.0% | |
| TGAACTGCTAGTGATGAACT+TGG | - | chr5_3:64064418-64064437 | None:intergenic | 40.0% | |
| TCATCACTAGCAGTTCAACT+AGG | + | chr5_3:64064421-64064440 | Msa0824650:CDS | 40.0% | |
| AGGAACCAAGTTTGCAAATG+CGG | + | chr5_3:64064441-64064460 | Msa0824650:CDS | 40.0% | |
| GTTAACCGCATTTGCAAACT+TGG | - | chr5_3:64064449-64064468 | None:intergenic | 40.0% | |
| ATCATCAGAGGAAGAAGAAG+TGG | - | chr5_3:64064512-64064531 | None:intergenic | 40.0% | |
| GAGGCTACTAGTGATTGAAC+TGG | + | chr5_3:64063183-64063202 | Msa0824650:intron | 45.0% | |
| AATAAAGGTGAAGCCGAGAG+AGG | - | chr5_3:64063318-64063337 | None:intergenic | 45.0% | |
| TCGGCTTCACCTTTATTCCA+TGG | + | chr5_3:64063321-64063340 | Msa0824650:intron | 45.0% | |
| !! | AACTTGTTGAGGAAGCCACT+TGG | + | chr5_3:64063488-64063507 | Msa0824650:intron | 45.0% |
| ! | ACCAAGTGTGTCACTGTCAT+GGG | + | chr5_3:64063583-64063602 | Msa0824650:intron | 45.0% |
| ! | GTTGTTACGACAGGTTCTAG+TGG | + | chr5_3:64063643-64063662 | Msa0824650:intron | 45.0% |
| ATAGTGGTTGTGTGTGTGTG+TGG | + | chr5_3:64063692-64063711 | Msa0824650:intron | 45.0% | |
| TAGTGGTTGTGTGTGTGTGT+GGG | + | chr5_3:64063693-64063712 | Msa0824650:intron | 45.0% | |
| GGATTGTCCTAGAAATGTCG+CGG | + | chr5_3:64064128-64064147 | Msa0824650:intron | 45.0% | |
| GCTAGTGATGAACTTGGAGT+TGG | - | chr5_3:64064412-64064431 | None:intergenic | 45.0% | |
| ATCAGAGGAAGAAGAAGTGG+AGG | - | chr5_3:64064509-64064528 | None:intergenic | 45.0% | |
| GAGGCTACTAGTGATTGAAC+TGG | + | chr5_3:64063183-64063202 | Msa0824650:intron | 45.0% | |
| AATAAAGGTGAAGCCGAGAG+AGG | - | chr5_3:64063318-64063337 | None:intergenic | 45.0% | |
| TCGGCTTCACCTTTATTCCA+TGG | + | chr5_3:64063321-64063340 | Msa0824650:intron | 45.0% | |
| !! | AACTTGTTGAGGAAGCCACT+TGG | + | chr5_3:64063488-64063507 | Msa0824650:intron | 45.0% |
| ! | ACCAAGTGTGTCACTGTCAT+GGG | + | chr5_3:64063583-64063602 | Msa0824650:intron | 45.0% |
| ! | GTTGTTACGACAGGTTCTAG+TGG | + | chr5_3:64063643-64063662 | Msa0824650:intron | 45.0% |
| ATAGTGGTTGTGTGTGTGTG+TGG | + | chr5_3:64063692-64063711 | Msa0824650:intron | 45.0% | |
| TAGTGGTTGTGTGTGTGTGT+GGG | + | chr5_3:64063693-64063712 | Msa0824650:intron | 45.0% | |
| GGATTGTCCTAGAAATGTCG+CGG | + | chr5_3:64064128-64064147 | Msa0824650:intron | 45.0% | |
| GCTAGTGATGAACTTGGAGT+TGG | - | chr5_3:64064412-64064431 | None:intergenic | 45.0% | |
| ATCAGAGGAAGAAGAAGTGG+AGG | - | chr5_3:64064509-64064528 | None:intergenic | 45.0% | |
| ! | TGGGTTGACGTTTGGTTAGC+CGG | + | chr5_3:64063113-64063132 | Msa0824650:intron | 50.0% |
| ! | GACCAAGTGTGTCACTGTCA+TGG | + | chr5_3:64063582-64063601 | Msa0824650:intron | 50.0% |
| ACCCATGACAGTGACACACT+TGG | - | chr5_3:64063587-64063606 | None:intergenic | 50.0% | |
| CTGTCATGGGTGTGGTTCAT+AGG | + | chr5_3:64063596-64063615 | Msa0824650:intron | 50.0% | |
| TGGTTCATAGGCTGGATGGA+AGG | + | chr5_3:64063608-64063627 | Msa0824650:intron | 50.0% | |
| AGTGGTTGTGTGTGTGTGTG+GGG | + | chr5_3:64063694-64063713 | Msa0824650:intron | 50.0% | |
| TTGGTTGCCGCGACATTTCT+AGG | - | chr5_3:64064138-64064157 | None:intergenic | 50.0% | |
| ! | TGGGTTGACGTTTGGTTAGC+CGG | + | chr5_3:64063113-64063132 | Msa0824650:intron | 50.0% |
| ! | GACCAAGTGTGTCACTGTCA+TGG | + | chr5_3:64063582-64063601 | Msa0824650:intron | 50.0% |
| ACCCATGACAGTGACACACT+TGG | - | chr5_3:64063587-64063606 | None:intergenic | 50.0% | |
| CTGTCATGGGTGTGGTTCAT+AGG | + | chr5_3:64063596-64063615 | Msa0824650:intron | 50.0% | |
| TGGTTCATAGGCTGGATGGA+AGG | + | chr5_3:64063608-64063627 | Msa0824650:intron | 50.0% | |
| AGTGGTTGTGTGTGTGTGTG+GGG | + | chr5_3:64063694-64063713 | Msa0824650:intron | 50.0% | |
| TTGGTTGCCGCGACATTTCT+AGG | - | chr5_3:64064138-64064157 | None:intergenic | 50.0% | |
| ! | GTTGACGTTTGGTTAGCCGG+TGG | + | chr5_3:64063116-64063135 | Msa0824650:intron | 55.0% |
| ! | GTGTGTCACTGTCATGGGTG+TGG | + | chr5_3:64063588-64063607 | Msa0824650:intron | 55.0% |
| CATGGGTGTGGTTCATAGGC+TGG | + | chr5_3:64063600-64063619 | Msa0824650:intron | 55.0% | |
| GGTGTGGTTCATAGGCTGGA+TGG | + | chr5_3:64063604-64063623 | Msa0824650:intron | 55.0% | |
| GGATGGAAGGCCGAAGAAAG+TGG | + | chr5_3:64063621-64063640 | Msa0824650:intron | 55.0% | |
| GTGGTTGTGTGTGTGTGTGG+GGG | + | chr5_3:64063695-64063714 | Msa0824650:intron | 55.0% | |
| TGGTTGTGTGTGTGTGTGGG+GGG | + | chr5_3:64063696-64063715 | Msa0824650:intron | 55.0% | |
| ! | GTTGACGTTTGGTTAGCCGG+TGG | + | chr5_3:64063116-64063135 | Msa0824650:intron | 55.0% |
| ! | GTGTGTCACTGTCATGGGTG+TGG | + | chr5_3:64063588-64063607 | Msa0824650:intron | 55.0% |
| CATGGGTGTGGTTCATAGGC+TGG | + | chr5_3:64063600-64063619 | Msa0824650:intron | 55.0% | |
| GGTGTGGTTCATAGGCTGGA+TGG | + | chr5_3:64063604-64063623 | Msa0824650:intron | 55.0% | |
| GGATGGAAGGCCGAAGAAAG+TGG | + | chr5_3:64063621-64063640 | Msa0824650:intron | 55.0% | |
| GTGGTTGTGTGTGTGTGTGG+GGG | + | chr5_3:64063695-64063714 | Msa0824650:intron | 55.0% | |
| TGGTTGTGTGTGTGTGTGGG+GGG | + | chr5_3:64063696-64063715 | Msa0824650:intron | 55.0% | |
| GGTTGTGTGTGTGTGTGGGG+GGG | + | chr5_3:64063697-64063716 | Msa0824650:intron | 60.0% | |
| GTTGTGTGTGTGTGTGGGGG+GGG | + | chr5_3:64063698-64063717 | Msa0824650:intron | 60.0% | |
| TTGTGTGTGTGTGTGGGGGG+GGG | + | chr5_3:64063699-64063718 | Msa0824650:intron | 60.0% | |
| GGTTGTGTGTGTGTGTGGGG+GGG | + | chr5_3:64063697-64063716 | Msa0824650:intron | 60.0% | |
| GTTGTGTGTGTGTGTGGGGG+GGG | + | chr5_3:64063698-64063717 | Msa0824650:intron | 60.0% | |
| TTGTGTGTGTGTGTGGGGGG+GGG | + | chr5_3:64063699-64063718 | Msa0824650:intron | 60.0% | |
| TGTGTGTGTGTGTGGGGGGG+GGG | + | chr5_3:64063700-64063719 | Msa0824650:intron | 65.0% | |
| TGTGTGTGTGTGTGGGGGGG+GGG | + | chr5_3:64063700-64063719 | Msa0824650:intron | 65.0% | |
| GTGTGTGTGTGTGGGGGGGG+GGG | + | chr5_3:64063701-64063720 | Msa0824650:intron | 70.0% | |
| TGTGTGTGTGTGGGGGGGGG+GGG | + | chr5_3:64063702-64063721 | Msa0824650:intron | 70.0% | |
| !! | GGGGGGGGGGGGGTGTTAAA+TGG | + | chr5_3:64063725-64063744 | Msa0824650:intron | 70.0% |
| GTGTGTGTGTGTGGGGGGGG+GGG | + | chr5_3:64063701-64063720 | Msa0824650:intron | 70.0% | |
| TGTGTGTGTGTGGGGGGGGG+GGG | + | chr5_3:64063702-64063721 | Msa0824650:intron | 70.0% | |
| !! | GGGGGGGGGGGGGTGTTAAA+TGG | + | chr5_3:64063725-64063744 | Msa0824650:intron | 70.0% |
| GTGTGTGTGTGGGGGGGGGG+GGG | + | chr5_3:64063703-64063722 | Msa0824650:intron | 75.0% | |
| TGTGTGTGTGGGGGGGGGGG+GGG | + | chr5_3:64063704-64063723 | Msa0824650:intron | 75.0% | |
| GTGTGTGTGTGGGGGGGGGG+GGG | + | chr5_3:64063703-64063722 | Msa0824650:intron | 75.0% | |
| TGTGTGTGTGGGGGGGGGGG+GGG | + | chr5_3:64063704-64063723 | Msa0824650:intron | 75.0% | |
| ! | GTGTGTGTGGGGGGGGGGGG+GGG | + | chr5_3:64063705-64063724 | Msa0824650:intron | 80.0% |
| ! | TGTGTGTGGGGGGGGGGGGG+GGG | + | chr5_3:64063706-64063725 | Msa0824650:intron | 80.0% |
| ! | GTGTGTGTGGGGGGGGGGGG+GGG | + | chr5_3:64063705-64063724 | Msa0824650:intron | 80.0% |
| ! | TGTGTGTGGGGGGGGGGGGG+GGG | + | chr5_3:64063706-64063725 | Msa0824650:intron | 80.0% |
| ! | GTGTGTGGGGGGGGGGGGGG+GGG | + | chr5_3:64063707-64063726 | Msa0824650:intron | 85.0% |
| ! | TGTGTGGGGGGGGGGGGGGG+GGG | + | chr5_3:64063708-64063727 | Msa0824650:intron | 85.0% |
| ! | GTGTGTGGGGGGGGGGGGGG+GGG | + | chr5_3:64063707-64063726 | Msa0824650:intron | 85.0% |
| ! | TGTGTGGGGGGGGGGGGGGG+GGG | + | chr5_3:64063708-64063727 | Msa0824650:intron | 85.0% |
| ! | GTGTGGGGGGGGGGGGGGGG+GGG | + | chr5_3:64063709-64063728 | Msa0824650:intron | 90.0% |
| ! | TGTGGGGGGGGGGGGGGGGG+GGG | + | chr5_3:64063710-64063729 | Msa0824650:intron | 90.0% |
| ! | GTGTGGGGGGGGGGGGGGGG+GGG | + | chr5_3:64063709-64063728 | Msa0824650:intron | 90.0% |
| ! | TGTGGGGGGGGGGGGGGGGG+GGG | + | chr5_3:64063710-64063729 | Msa0824650:intron | 90.0% |
| ! | GTGGGGGGGGGGGGGGGGGG+GGG | + | chr5_3:64063711-64063730 | Msa0824650:intron | 95.0% |
| ! | TGGGGGGGGGGGGGGGGGGG+GGG | + | chr5_3:64063712-64063731 | Msa0824650:intron | 95.0% |
| ! | GTGGGGGGGGGGGGGGGGGG+GGG | + | chr5_3:64063711-64063730 | Msa0824650:intron | 95.0% |
| ! | TGGGGGGGGGGGGGGGGGGG+GGG | + | chr5_3:64063712-64063731 | Msa0824650:intron | 95.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 64063112 | 64064597 | 64063112 | ID=Msa0824650;Name=Msa0824650 |
| chr5_3 | mRNA | 64063112 | 64064597 | 64063112 | ID=Msa0824650-mRNA-1;Parent=Msa0824650;Name=Msa0824650-mRNA-1;_AED=0.43;_eAED=0.43;_QI=0|0|0|0.5|1|1|2|0|109 |
| chr5_3 | exon | 64063112 | 64063115 | 64063112 | ID=Msa0824650-mRNA-1:exon:19969;Parent=Msa0824650-mRNA-1 |
| chr5_3 | exon | 64064272 | 64064597 | 64064272 | ID=Msa0824650-mRNA-1:exon:19970;Parent=Msa0824650-mRNA-1 |
| chr5_3 | CDS | 64063112 | 64063115 | 64063112 | ID=Msa0824650-mRNA-1:cds;Parent=Msa0824650-mRNA-1 |
| chr5_3 | CDS | 64064272 | 64064597 | 64064272 | ID=Msa0824650-mRNA-1:cds;Parent=Msa0824650-mRNA-1 |
| Gene Sequence |
| Protein sequence |
