Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0743740 | XP_003617738.1 | 90.281 | 391 | 30 | 1 | 1 | 391 | 1 | 383 | 0.0 | 654 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0743740 | G7K4I1 | 90.281 | 391 | 30 | 1 | 1 | 391 | 1 | 383 | 0.0 | 654 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004860 | Msa0743740 | 0.807470 | 4.977196e-50 | -8.615850e-47 |
| Msa0076000 | Msa0743740 | 0.800167 | 1.636092e-48 | -8.615850e-47 |
| Msa0638070 | Msa0743740 | 0.820217 | 7.706830e-53 | -8.615850e-47 |
| Msa0661090 | Msa0743740 | 0.812799 | 3.534330e-51 | -8.615850e-47 |
| Msa0743740 | Msa0814320 | 0.803116 | 4.064815e-49 | -8.615850e-47 |
| Msa0743740 | Msa0824650 | 0.855494 | 6.076920e-62 | -8.615850e-47 |
| Msa0743740 | Msa0863920 | 0.813917 | 2.007409e-51 | -8.615850e-47 |
| Msa0743740 | Msa0896290 | 0.812278 | 4.595203e-51 | -8.615850e-47 |
| Msa0743740 | Msa0967370 | 0.801017 | 1.098085e-48 | -8.615850e-47 |
| Msa0743740 | Msa1194030 | 0.814029 | 1.897162e-51 | -8.615850e-47 |
| Msa0743740 | Msa1249240 | 0.804149 | 2.481465e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0743740 | MtrunA17_Chr5g0445811 | 88.014 | 292 | 27 | 1 | 1 | 292 | 1 | 284 | 1.30e-180 | 503 |
| Msa0743740 | MtrunA17_Chr5g0445881 | 50.105 | 475 | 145 | 13 | 1 | 390 | 1 | 468 | 4.83e-109 | 328 |
| Msa0743740 | MtrunA17_Chr5g0445831 | 66.957 | 230 | 50 | 3 | 75 | 289 | 197 | 415 | 8.33e-88 | 272 |
| Msa0743740 | MtrunA17_Chr5g0445831 | 49.593 | 246 | 52 | 5 | 1 | 213 | 1 | 207 | 3.19e-56 | 190 |
| Msa0743740 | MtrunA17_Chr5g0445771 | 42.830 | 530 | 136 | 15 | 3 | 391 | 1 | 504 | 1.95e-85 | 268 |
| Msa0743740 | MtrunA17_Chr5g0446181 | 39.474 | 456 | 126 | 20 | 1 | 391 | 1 | 371 | 3.92e-55 | 186 |
| Msa0743740 | MtrunA17_Chr5g0445861 | 37.412 | 425 | 124 | 12 | 1 | 284 | 1 | 424 | 4.03e-49 | 171 |
| Msa0743740 | MtrunA17_Chr5g0445801 | 90.741 | 108 | 10 | 0 | 284 | 391 | 3 | 110 | 7.56e-47 | 155 |
| Msa0743740 | MtrunA17_Chr5g0445821 | 67.890 | 109 | 30 | 2 | 284 | 391 | 3 | 107 | 5.76e-38 | 132 |
| Msa0743740 | MtrunA17_Chr5g0445871 | 44.762 | 210 | 69 | 6 | 223 | 390 | 1 | 205 | 1.37e-32 | 122 |
| Msa0743740 | MtrunA17_Chr5g0445961 | 43.784 | 185 | 77 | 4 | 64 | 243 | 220 | 382 | 1.33e-27 | 114 |
| Msa0743740 | MtrunA17_Chr5g0445851 | 62.832 | 113 | 35 | 2 | 284 | 391 | 3 | 113 | 2.08e-19 | 83.2 |
| Msa0743740 | MtrunA17_Chr5g0446171 | 36.310 | 168 | 74 | 6 | 1 | 148 | 1 | 155 | 7.33e-14 | 70.9 |
| Msa0743740 | MtrunA17_Chr5g0434151 | 50.000 | 62 | 26 | 1 | 278 | 339 | 18 | 74 | 1.52e-11 | 60.8 |
| Msa0743740 | MtrunA17_Chr1g0185261 | 53.012 | 83 | 29 | 2 | 186 | 258 | 106 | 188 | 1.89e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 63 sgRNAs with CRISPR-Local
Find 312 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATGAAATGAATGCTATTTA+TGG | 0.157301 | 5_1:-64254868 | Msa0743740:CDS |
| TGAATTAGAGTCTGAAATTT+TGG | 0.200999 | 5_1:-64256666 | Msa0743740:CDS |
| TAAATTAGAGCATGAGATTT+TGG | 0.226147 | 5_1:-64256573 | Msa0743740:CDS |
| TGATGACCCAGGTTCGATTT+TGG | 0.247518 | 5_1:+64256988 | None:intergenic |
| GGAAACAATGAAGAAGAATT+TGG | 0.272695 | 5_1:-64256420 | Msa0743740:CDS |
| CGGACGGTTGAGATATTACT+TGG | 0.354529 | 5_1:-64256362 | Msa0743740:CDS |
| CGTCAGAAACATCCTCTTCC+TGG | 0.357072 | 5_1:+64256264 | None:intergenic |
| GTTAACCGCATTTGCAAACT+TGG | 0.363844 | 5_1:+64254786 | None:intergenic |
| GTAGATGCTCATCGCACTCT+TGG | 0.411937 | 5_1:-64256227 | Msa0743740:CDS |
| GGGAACAGTGAACATGAAAA+AGG | 0.418775 | 5_1:-64254956 | Msa0743740:CDS |
| TTCAAGTTTGTTGCTAGGGT+TGG | 0.426251 | 5_1:+64256958 | None:intergenic |
| TATCTTCAAGTTTGTTGCTA+GGG | 0.435539 | 5_1:+64256954 | None:intergenic |
| GGTTGAAGTTATGAATTTGA+AGG | 0.450314 | 5_1:-64256741 | Msa0743740:CDS |
| TTGAAGGAGAAACTTGTTGA+TGG | 0.453707 | 5_1:-64256725 | Msa0743740:CDS |
| GATTAACACTGGTGAATTGA+AGG | 0.456161 | 5_1:-64256441 | Msa0743740:CDS |
| AATGAACTTGTTGTGCTAAG+AGG | 0.457558 | 5_1:-64256605 | Msa0743740:CDS |
| ATCTTAACAAGGTCATGAAT+AGG | 0.459377 | 5_1:+64256929 | None:intergenic |
| GACGCTCAAGGTGCATCATC+AGG | 0.460261 | 5_1:-64256173 | Msa0743740:intron |
| CATCGTTGTTGTCGTTATCA+AGG | 0.462013 | 5_1:+64254917 | None:intergenic |
| GGAGGGTGATAAGAATGATT+TGG | 0.467049 | 5_1:-64256474 | Msa0743740:CDS |
| TTATCTTCAAGTTTGTTGCT+AGG | 0.469484 | 5_1:+64256953 | None:intergenic |
| ACAAAGCAAGGTTCGTGTAA+TGG | 0.481653 | 5_1:-64256495 | Msa0743740:CDS |
| ATCCAACCTTGAAACTCTTC+CGG | 0.481888 | 5_1:+64256310 | None:intergenic |
| CTTGCTCTGTAGCTGAGTAC+TGG | 0.490258 | 5_1:+64256196 | None:intergenic |
| AAAATGTATGAGAAAGGTAA+TGG | 0.491795 | 5_1:-64256806 | Msa0743740:CDS |
| GAGGAAATTAAATGAAAAGA+TGG | 0.502373 | 5_1:-64256639 | Msa0743740:CDS |
| ATCATCAGAGGAAGAAGAAG+TGG | 0.517134 | 5_1:+64254723 | None:intergenic |
| AGTTTGTTGCTAGGGTTGGT+AGG | 0.527539 | 5_1:+64256962 | None:intergenic |
| GCTAGTGATGAACTTGGAGT+TGG | 0.533733 | 5_1:+64254823 | None:intergenic |
| ATTCAACCCAAAATCGAACC+TGG | 0.539946 | 5_1:-64256995 | Msa0743740:CDS |
| GACCGGAAGAGTTTCAAGGT+TGG | 0.543274 | 5_1:-64256312 | Msa0743740:CDS |
| ACGACAACAACGATGATGAA+TGG | 0.543622 | 5_1:-64254909 | Msa0743740:CDS |
| GTTGTGCTAAGAGGAATGAT+TGG | 0.543890 | 5_1:-64256596 | Msa0743740:CDS |
| GAATGACCGGAAGAGTTTCA+AGG | 0.546477 | 5_1:-64256316 | Msa0743740:CDS |
| TTCTTGATAATCTTACAAGA+AGG | 0.548649 | 5_1:-64254693 | Msa0743740:CDS |
| TGAACTGCTAGTGATGAACT+TGG | 0.561399 | 5_1:+64254817 | None:intergenic |
| ACTCAGAGAGGAGTTTCACT+TGG | 0.562269 | 5_1:-64256876 | Msa0743740:CDS |
| AGGAACCAAGTTTGCAAATG+CGG | 0.569154 | 5_1:-64254791 | Msa0743740:CDS |
| ATCAGAGGAAGAAGAAGTGG+AGG | 0.583434 | 5_1:+64254726 | None:intergenic |
| AAGCAAGGTTCGTGTAATGG+AGG | 0.588505 | 5_1:-64256492 | Msa0743740:CDS |
| GCTGAACTTAAGATTAACAC+TGG | 0.590508 | 5_1:-64256452 | Msa0743740:CDS |
| ATTAAATGAAAAGATGGCGG+AGG | 0.593503 | 5_1:-64256633 | Msa0743740:CDS |
| TGGAATTGCTGTGAAGAATG+AGG | 0.597222 | 5_1:-64254848 | Msa0743740:CDS |
| CTACAGAGCAAGGACGCTCA+AGG | 0.598339 | 5_1:-64256185 | Msa0743740:CDS |
| TTCACTTGGAAAGACTCTCA+AGG | 0.600450 | 5_1:-64256862 | Msa0743740:CDS |
| TCATCACTAGCAGTTCAACT+AGG | 0.607456 | 5_1:-64254811 | Msa0743740:CDS |
| AGCAAGGTTCGTGTAATGGA+GGG | 0.616655 | 5_1:-64256491 | Msa0743740:CDS |
| AAAGAAGAACAATGAACTAG+AGG | 0.622601 | 5_1:-64256762 | Msa0743740:CDS |
| TCGTGATGAGGTACAAAGCA+AGG | 0.624053 | 5_1:-64256507 | Msa0743740:CDS |
| CAGTACTCAGCTACAGAGCA+AGG | 0.625882 | 5_1:-64256195 | Msa0743740:CDS |
| AAGAAACAATGAATCATCAG+AGG | 0.630095 | 5_1:+64254711 | None:intergenic |
| GAAATTAAATGAAAAGATGG+CGG | 0.632116 | 5_1:-64256636 | Msa0743740:CDS |
| TTGGTAGGTGATGATGACCC+AGG | 0.634407 | 5_1:+64256977 | None:intergenic |
| TTCAACCCAAAATCGAACCT+GGG | 0.641655 | 5_1:-64256994 | Msa0743740:CDS |
| GGACGGTTGAGATATTACTT+GGG | 0.655123 | 5_1:-64256361 | Msa0743740:CDS |
| GATGAATGGTGTATGTCTCA+AGG | 0.659079 | 5_1:-64254895 | Msa0743740:CDS |
| TGGAAACTATAAGTGAGCTG+AGG | 0.672636 | 5_1:-64256400 | Msa0743740:CDS |
| TGAGGAAAGAAAACGATAAG+CGG | 0.679932 | 5_1:-64256382 | Msa0743740:CDS |
| TGATAGCAATGTTCGTGATG+AGG | 0.684173 | 5_1:-64256519 | Msa0743740:CDS |
| AAACACACAAAATCTTAACA+AGG | 0.692804 | 5_1:+64256918 | None:intergenic |
| TAATCTTACAAGAAGGTCTG+CGG | 0.693035 | 5_1:-64254686 | Msa0743740:CDS |
| GAAAGAAAACGATAAGCGGA+CGG | 0.696193 | 5_1:-64256378 | Msa0743740:CDS |
| TAGGGATTTGAGACTCAGAG+AGG | 0.711291 | 5_1:-64256888 | Msa0743740:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CTTTAAATTCAATTTTTTTA+AGG | + | chr5_1:64255569-64255588 | None:intergenic | 10.0% |
| !!! | CTTTAAATTCAATTTTTTTA+AGG | + | chr5_1:64255569-64255588 | None:intergenic | 10.0% |
| !!! | CAAAATTTTCATATCTTAAT+AGG | + | chr5_1:64255539-64255558 | None:intergenic | 15.0% |
| !!! | TAAATTCAATTTTTTTAAGG+TGG | + | chr5_1:64255566-64255585 | None:intergenic | 15.0% |
| !! | AAAAAGAAACAACTTAAAAA+TGG | + | chr5_1:64256406-64256425 | None:intergenic | 15.0% |
| !! | TATTCAAATGAAAATATAGT+TGG | + | chr5_1:64256583-64256602 | None:intergenic | 15.0% |
| !!! | TAATATATCTCTTTTATGTT+AGG | - | chr5_1:64256676-64256695 | Msa0743740:CDS | 15.0% |
| !!! | CAAAATTTTCATATCTTAAT+AGG | + | chr5_1:64255539-64255558 | None:intergenic | 15.0% |
| !!! | TAAATTCAATTTTTTTAAGG+TGG | + | chr5_1:64255566-64255585 | None:intergenic | 15.0% |
| !! | AAAAAGAAACAACTTAAAAA+TGG | + | chr5_1:64256406-64256425 | None:intergenic | 15.0% |
| !! | TATTCAAATGAAAATATAGT+TGG | + | chr5_1:64256583-64256602 | None:intergenic | 15.0% |
| !!! | TAATATATCTCTTTTATGTT+AGG | - | chr5_1:64256676-64256695 | Msa0743740:CDS | 15.0% |
| !!! | AAGATTTTCACTATATTTCT+TGG | + | chr5_1:64256301-64256320 | None:intergenic | 20.0% |
| !!! | TGAAAATCTTGTTAGATTTT+AGG | - | chr5_1:64256311-64256330 | Msa0743740:CDS | 20.0% |
| !!! | GTTTTTCATTTTTGAGTTTT+GGG | + | chr5_1:64256436-64256455 | None:intergenic | 20.0% |
| !!! | AAGATTTTCACTATATTTCT+TGG | + | chr5_1:64256301-64256320 | None:intergenic | 20.0% |
| !!! | TGAAAATCTTGTTAGATTTT+AGG | - | chr5_1:64256311-64256330 | Msa0743740:CDS | 20.0% |
| !!! | GTTTTTCATTTTTGAGTTTT+GGG | + | chr5_1:64256436-64256455 | None:intergenic | 20.0% |
| ! | AAACACACAAAATCTTAACA+AGG | + | chr5_1:64254743-64254762 | None:intergenic | 25.0% |
| !! | TGTTAAGATTTTGTGTGTTT+TGG | - | chr5_1:64254743-64254762 | Msa0743740:CDS | 25.0% |
| ! | AGAGAAAAAATGTATGAGAA+AGG | - | chr5_1:64254846-64254865 | Msa0743740:CDS | 25.0% |
| ! | AAAATGTATGAGAAAGGTAA+TGG | - | chr5_1:64254852-64254871 | Msa0743740:CDS | 25.0% |
| !!! | TGAATTAGAGTCTGAAATTT+TGG | - | chr5_1:64254992-64255011 | Msa0743740:intron | 25.0% |
| ! | GAGGAAATTAAATGAAAAGA+TGG | - | chr5_1:64255019-64255038 | Msa0743740:intron | 25.0% |
| ! | GAAATTAAATGAAAAGATGG+CGG | - | chr5_1:64255022-64255041 | Msa0743740:intron | 25.0% |
| !! | TAAATTAGAGCATGAGATTT+TGG | - | chr5_1:64255085-64255104 | Msa0743740:intron | 25.0% |
| !! | TCTTTTTACAAAAAGTTCAG+AGG | - | chr5_1:64255320-64255339 | Msa0743740:intron | 25.0% |
| ! | TCCATAATAACAACTTTCTT+CGG | + | chr5_1:64256081-64256100 | None:intergenic | 25.0% |
| !! | AAGAAAGTTGTTATTATGGA+AGG | - | chr5_1:64256081-64256100 | Msa0743740:intron | 25.0% |
| !! | AGAAAGTTGTTATTATGGAA+GGG | - | chr5_1:64256082-64256101 | Msa0743740:intron | 25.0% |
| !! | TTTCTCTTCAAGTTTATCAT+AGG | + | chr5_1:64256246-64256265 | None:intergenic | 25.0% |
| !! | TTAGACTCATTTTCTTTTCA+TGG | + | chr5_1:64256276-64256295 | None:intergenic | 25.0% |
| !!! | CGTTTTTCATTTTTGAGTTT+TGG | + | chr5_1:64256437-64256456 | None:intergenic | 25.0% |
| !!! | AACTCATTTTGGTTTTTCTT+AGG | - | chr5_1:64256476-64256495 | Msa0743740:CDS | 25.0% |
| !! | TATCTCTTTTATGTTAGGTA+AGG | - | chr5_1:64256681-64256700 | Msa0743740:CDS | 25.0% |
| !! | ATCTCTTTTATGTTAGGTAA+GGG | - | chr5_1:64256682-64256701 | Msa0743740:CDS | 25.0% |
| !! | CATGAAATGAATGCTATTTA+TGG | - | chr5_1:64256790-64256809 | Msa0743740:CDS | 25.0% |
| !! | TTCTTGATAATCTTACAAGA+AGG | - | chr5_1:64256965-64256984 | Msa0743740:CDS | 25.0% |
| ! | AAACACACAAAATCTTAACA+AGG | + | chr5_1:64254743-64254762 | None:intergenic | 25.0% |
| !! | TGTTAAGATTTTGTGTGTTT+TGG | - | chr5_1:64254743-64254762 | Msa0743740:CDS | 25.0% |
| ! | AGAGAAAAAATGTATGAGAA+AGG | - | chr5_1:64254846-64254865 | Msa0743740:CDS | 25.0% |
| ! | AAAATGTATGAGAAAGGTAA+TGG | - | chr5_1:64254852-64254871 | Msa0743740:CDS | 25.0% |
| !!! | TGAATTAGAGTCTGAAATTT+TGG | - | chr5_1:64254992-64255011 | Msa0743740:intron | 25.0% |
| ! | GAGGAAATTAAATGAAAAGA+TGG | - | chr5_1:64255019-64255038 | Msa0743740:intron | 25.0% |
| ! | GAAATTAAATGAAAAGATGG+CGG | - | chr5_1:64255022-64255041 | Msa0743740:intron | 25.0% |
| !! | TAAATTAGAGCATGAGATTT+TGG | - | chr5_1:64255085-64255104 | Msa0743740:intron | 25.0% |
| !! | TCTTTTTACAAAAAGTTCAG+AGG | - | chr5_1:64255320-64255339 | Msa0743740:intron | 25.0% |
| ! | TCCATAATAACAACTTTCTT+CGG | + | chr5_1:64256081-64256100 | None:intergenic | 25.0% |
| !! | AAGAAAGTTGTTATTATGGA+AGG | - | chr5_1:64256081-64256100 | Msa0743740:intron | 25.0% |
| !! | AGAAAGTTGTTATTATGGAA+GGG | - | chr5_1:64256082-64256101 | Msa0743740:intron | 25.0% |
| !! | TTTCTCTTCAAGTTTATCAT+AGG | + | chr5_1:64256246-64256265 | None:intergenic | 25.0% |
| !! | TTAGACTCATTTTCTTTTCA+TGG | + | chr5_1:64256276-64256295 | None:intergenic | 25.0% |
| !!! | CGTTTTTCATTTTTGAGTTT+TGG | + | chr5_1:64256437-64256456 | None:intergenic | 25.0% |
| !!! | AACTCATTTTGGTTTTTCTT+AGG | - | chr5_1:64256476-64256495 | Msa0743740:CDS | 25.0% |
| !! | TATCTCTTTTATGTTAGGTA+AGG | - | chr5_1:64256681-64256700 | Msa0743740:CDS | 25.0% |
| !! | ATCTCTTTTATGTTAGGTAA+GGG | - | chr5_1:64256682-64256701 | Msa0743740:CDS | 25.0% |
| !! | CATGAAATGAATGCTATTTA+TGG | - | chr5_1:64256790-64256809 | Msa0743740:CDS | 25.0% |
| !! | TTCTTGATAATCTTACAAGA+AGG | - | chr5_1:64256965-64256984 | Msa0743740:CDS | 25.0% |
| !! | TATCTTCAAGTTTGTTGCTA+GGG | + | chr5_1:64254707-64254726 | None:intergenic | 30.0% |
| !! | TTATCTTCAAGTTTGTTGCT+AGG | + | chr5_1:64254708-64254727 | None:intergenic | 30.0% |
| ATCTTAACAAGGTCATGAAT+AGG | + | chr5_1:64254732-64254751 | None:intergenic | 30.0% | |
| AAAGAAGAACAATGAACTAG+AGG | - | chr5_1:64254896-64254915 | Msa0743740:CDS | 30.0% | |
| GGTTGAAGTTATGAATTTGA+AGG | - | chr5_1:64254917-64254936 | Msa0743740:CDS | 30.0% | |
| TGAGGAAGTTGAAGAAAAAA+TGG | - | chr5_1:64255111-64255130 | Msa0743740:intron | 30.0% | |
| GGAAACAATGAAGAAGAATT+TGG | - | chr5_1:64255238-64255257 | Msa0743740:intron | 30.0% | |
| !! | TACTAATTTTCAAGAGAACC+AGG | - | chr5_1:64255376-64255395 | Msa0743740:intron | 30.0% |
| ! | TTGAATTTAAAGCCAAGAGT+AGG | - | chr5_1:64255577-64255596 | Msa0743740:intron | 30.0% |
| TATAACACATTTCCTACTCT+TGG | + | chr5_1:64255592-64255611 | None:intergenic | 30.0% | |
| ! | GTGTTATATTTTCTTTGAGC+TGG | - | chr5_1:64255604-64255623 | Msa0743740:intron | 30.0% |
| TCTTAGGTAACATGGAATAA+AGG | + | chr5_1:64255750-64255769 | None:intergenic | 30.0% | |
| TCAAATCAATTCATTATGGC+GGG | + | chr5_1:64255887-64255906 | None:intergenic | 30.0% | |
| GTCAAATCAATTCATTATGG+CGG | + | chr5_1:64255888-64255907 | None:intergenic | 30.0% | |
| CACGTCAAATCAATTCATTA+TGG | + | chr5_1:64255891-64255910 | None:intergenic | 30.0% | |
| !! | TGAATTGATTTGACGTGTAT+TGG | - | chr5_1:64255894-64255913 | Msa0743740:intron | 30.0% |
| !! | TTGTAGAACAAACTTGTTGA+GGG | - | chr5_1:64255922-64255941 | Msa0743740:intron | 30.0% |
| GTGATGTTAGTAACTAGAAT+AGG | - | chr5_1:64255975-64255994 | Msa0743740:intron | 30.0% | |
| !! | GAAAGAGTATTGGATAAGAA+TGG | - | chr5_1:64256137-64256156 | Msa0743740:intron | 30.0% |
| TTGGATAAGAATGGTTATGT+AGG | - | chr5_1:64256146-64256165 | Msa0743740:intron | 30.0% | |
| TGGATAAGAATGGTTATGTA+GGG | - | chr5_1:64256147-64256166 | Msa0743740:intron | 30.0% | |
| ATCCTTTGAATGTTCATCTT+GGG | + | chr5_1:64256215-64256234 | None:intergenic | 30.0% | |
| TATCCTTTGAATGTTCATCT+TGG | + | chr5_1:64256216-64256235 | None:intergenic | 30.0% | |
| AAGATGAACATTCAAAGGAT+AGG | - | chr5_1:64256215-64256234 | Msa0743740:CDS | 30.0% | |
| ! | ACTCATTTTCTTTTCATGGA+GGG | + | chr5_1:64256272-64256291 | None:intergenic | 30.0% |
| ATGAAAAACGAAACAAAAGC+AGG | - | chr5_1:64256447-64256466 | Msa0743740:CDS | 30.0% | |
| AAGCAAAAACATGGAAACTA+AGG | + | chr5_1:64256619-64256638 | None:intergenic | 30.0% | |
| ATAACACTCAAGCAAAAACA+TGG | + | chr5_1:64256628-64256647 | None:intergenic | 30.0% | |
| AAGAAACAATGAATCATCAG+AGG | + | chr5_1:64256950-64256969 | None:intergenic | 30.0% | |
| !! | TATCTTCAAGTTTGTTGCTA+GGG | + | chr5_1:64254707-64254726 | None:intergenic | 30.0% |
| !! | TTATCTTCAAGTTTGTTGCT+AGG | + | chr5_1:64254708-64254727 | None:intergenic | 30.0% |
| ATCTTAACAAGGTCATGAAT+AGG | + | chr5_1:64254732-64254751 | None:intergenic | 30.0% | |
| AAAGAAGAACAATGAACTAG+AGG | - | chr5_1:64254896-64254915 | Msa0743740:CDS | 30.0% | |
| GGTTGAAGTTATGAATTTGA+AGG | - | chr5_1:64254917-64254936 | Msa0743740:CDS | 30.0% | |
| TGAGGAAGTTGAAGAAAAAA+TGG | - | chr5_1:64255111-64255130 | Msa0743740:intron | 30.0% | |
| GGAAACAATGAAGAAGAATT+TGG | - | chr5_1:64255238-64255257 | Msa0743740:intron | 30.0% | |
| !! | TACTAATTTTCAAGAGAACC+AGG | - | chr5_1:64255376-64255395 | Msa0743740:intron | 30.0% |
| ! | TTGAATTTAAAGCCAAGAGT+AGG | - | chr5_1:64255577-64255596 | Msa0743740:intron | 30.0% |
| TATAACACATTTCCTACTCT+TGG | + | chr5_1:64255592-64255611 | None:intergenic | 30.0% | |
| ! | GTGTTATATTTTCTTTGAGC+TGG | - | chr5_1:64255604-64255623 | Msa0743740:intron | 30.0% |
| TCTTAGGTAACATGGAATAA+AGG | + | chr5_1:64255750-64255769 | None:intergenic | 30.0% | |
| TCAAATCAATTCATTATGGC+GGG | + | chr5_1:64255887-64255906 | None:intergenic | 30.0% | |
| GTCAAATCAATTCATTATGG+CGG | + | chr5_1:64255888-64255907 | None:intergenic | 30.0% | |
| CACGTCAAATCAATTCATTA+TGG | + | chr5_1:64255891-64255910 | None:intergenic | 30.0% | |
| !! | TGAATTGATTTGACGTGTAT+TGG | - | chr5_1:64255894-64255913 | Msa0743740:intron | 30.0% |
| !! | TTGTAGAACAAACTTGTTGA+GGG | - | chr5_1:64255922-64255941 | Msa0743740:intron | 30.0% |
| GTGATGTTAGTAACTAGAAT+AGG | - | chr5_1:64255975-64255994 | Msa0743740:intron | 30.0% | |
| !! | GAAAGAGTATTGGATAAGAA+TGG | - | chr5_1:64256137-64256156 | Msa0743740:intron | 30.0% |
| TTGGATAAGAATGGTTATGT+AGG | - | chr5_1:64256146-64256165 | Msa0743740:intron | 30.0% | |
| TGGATAAGAATGGTTATGTA+GGG | - | chr5_1:64256147-64256166 | Msa0743740:intron | 30.0% | |
| ATCCTTTGAATGTTCATCTT+GGG | + | chr5_1:64256215-64256234 | None:intergenic | 30.0% | |
| TATCCTTTGAATGTTCATCT+TGG | + | chr5_1:64256216-64256235 | None:intergenic | 30.0% | |
| AAGATGAACATTCAAAGGAT+AGG | - | chr5_1:64256215-64256234 | Msa0743740:CDS | 30.0% | |
| ! | ACTCATTTTCTTTTCATGGA+GGG | + | chr5_1:64256272-64256291 | None:intergenic | 30.0% |
| ATGAAAAACGAAACAAAAGC+AGG | - | chr5_1:64256447-64256466 | Msa0743740:CDS | 30.0% | |
| AAGCAAAAACATGGAAACTA+AGG | + | chr5_1:64256619-64256638 | None:intergenic | 30.0% | |
| ATAACACTCAAGCAAAAACA+TGG | + | chr5_1:64256628-64256647 | None:intergenic | 30.0% | |
| AAGAAACAATGAATCATCAG+AGG | + | chr5_1:64256950-64256969 | None:intergenic | 30.0% | |
| !!! | TTTTGTGTGTTTTGGAGAGT+AGG | - | chr5_1:64254751-64254770 | Msa0743740:CDS | 35.0% |
| !!! | TTTGTGTGTTTTGGAGAGTA+GGG | - | chr5_1:64254752-64254771 | Msa0743740:CDS | 35.0% |
| !! | TTGAAGGAGAAACTTGTTGA+TGG | - | chr5_1:64254933-64254952 | Msa0743740:CDS | 35.0% |
| !!! | AGTCTGAAATTTTGGAGTTG+AGG | - | chr5_1:64255000-64255019 | Msa0743740:intron | 35.0% |
| ! | ATTAAATGAAAAGATGGCGG+AGG | - | chr5_1:64255025-64255044 | Msa0743740:intron | 35.0% |
| !! | AATGAACTTGTTGTGCTAAG+AGG | - | chr5_1:64255053-64255072 | Msa0743740:intron | 35.0% |
| GCTGAACTTAAGATTAACAC+TGG | - | chr5_1:64255206-64255225 | Msa0743740:intron | 35.0% | |
| GATTAACACTGGTGAATTGA+AGG | - | chr5_1:64255217-64255236 | Msa0743740:intron | 35.0% | |
| TGAGGAAAGAAAACGATAAG+CGG | - | chr5_1:64255276-64255295 | Msa0743740:intron | 35.0% | |
| AAAAAGTTCAGAGGAATGAC+CGG | - | chr5_1:64255329-64255348 | Msa0743740:intron | 35.0% | |
| ACATGGAATAAAGGTAAAGC+CGG | + | chr5_1:64255741-64255760 | None:intergenic | 35.0% | |
| CTTGTTTGTCTTAGGTAACA+TGG | + | chr5_1:64255758-64255777 | None:intergenic | 35.0% | |
| GGAAAATCACATACAGCTAA+AGG | + | chr5_1:64255792-64255811 | None:intergenic | 35.0% | |
| ! | AGCTGTATGTGATTTTCCAA+TGG | - | chr5_1:64255794-64255813 | Msa0743740:intron | 35.0% |
| ! | AATGCTGCTTCTATTTCCAT+TGG | + | chr5_1:64255813-64255832 | None:intergenic | 35.0% |
| ! | CTCAAACAAATCTTGGTTCT+GGG | - | chr5_1:64255850-64255869 | Msa0743740:intron | 35.0% |
| !! | TCAAACAAATCTTGGTTCTG+GGG | - | chr5_1:64255851-64255870 | Msa0743740:intron | 35.0% |
| CAAATCAATTCATTATGGCG+GGG | + | chr5_1:64255886-64255905 | None:intergenic | 35.0% | |
| !! | GTTGTAGAACAAACTTGTTG+AGG | - | chr5_1:64255921-64255940 | Msa0743740:intron | 35.0% |
| AACAACACTCATGACACAAT+TGG | + | chr5_1:64256030-64256049 | None:intergenic | 35.0% | |
| ! | GCCGAAGAAAGTTGTTATTA+TGG | - | chr5_1:64256077-64256096 | Msa0743740:intron | 35.0% |
| GGATAAGAATGGTTATGTAG+GGG | - | chr5_1:64256148-64256167 | Msa0743740:intron | 35.0% | |
| ! | GTTGATTTCGTTGCATACTT+TGG | + | chr5_1:64256193-64256212 | None:intergenic | 35.0% |
| AACCCAAGATGAACATTCAA+AGG | - | chr5_1:64256210-64256229 | Msa0743740:CDS | 35.0% | |
| ! | GACTCATTTTCTTTTCATGG+AGG | + | chr5_1:64256273-64256292 | None:intergenic | 35.0% |
| ! | GCAGGTAACAAAACTCATTT+TGG | - | chr5_1:64256465-64256484 | Msa0743740:CDS | 35.0% |
| TCTTAGGTAAACATGATCAC+AGG | - | chr5_1:64256492-64256511 | Msa0743740:CDS | 35.0% | |
| TGCTTGAGTGTTATCATGTT+TGG | - | chr5_1:64256634-64256653 | Msa0743740:CDS | 35.0% | |
| TAATCTTACAAGAAGGTCTG+CGG | - | chr5_1:64256972-64256991 | Msa0743740:CDS | 35.0% | |
| !!! | TTTTGTGTGTTTTGGAGAGT+AGG | - | chr5_1:64254751-64254770 | Msa0743740:CDS | 35.0% |
| !!! | TTTGTGTGTTTTGGAGAGTA+GGG | - | chr5_1:64254752-64254771 | Msa0743740:CDS | 35.0% |
| !! | TTGAAGGAGAAACTTGTTGA+TGG | - | chr5_1:64254933-64254952 | Msa0743740:CDS | 35.0% |
| !!! | AGTCTGAAATTTTGGAGTTG+AGG | - | chr5_1:64255000-64255019 | Msa0743740:intron | 35.0% |
| ! | ATTAAATGAAAAGATGGCGG+AGG | - | chr5_1:64255025-64255044 | Msa0743740:intron | 35.0% |
| !! | AATGAACTTGTTGTGCTAAG+AGG | - | chr5_1:64255053-64255072 | Msa0743740:intron | 35.0% |
| GCTGAACTTAAGATTAACAC+TGG | - | chr5_1:64255206-64255225 | Msa0743740:intron | 35.0% | |
| GATTAACACTGGTGAATTGA+AGG | - | chr5_1:64255217-64255236 | Msa0743740:intron | 35.0% | |
| TGAGGAAAGAAAACGATAAG+CGG | - | chr5_1:64255276-64255295 | Msa0743740:intron | 35.0% | |
| AAAAAGTTCAGAGGAATGAC+CGG | - | chr5_1:64255329-64255348 | Msa0743740:intron | 35.0% | |
| ACATGGAATAAAGGTAAAGC+CGG | + | chr5_1:64255741-64255760 | None:intergenic | 35.0% | |
| CTTGTTTGTCTTAGGTAACA+TGG | + | chr5_1:64255758-64255777 | None:intergenic | 35.0% | |
| GGAAAATCACATACAGCTAA+AGG | + | chr5_1:64255792-64255811 | None:intergenic | 35.0% | |
| ! | AGCTGTATGTGATTTTCCAA+TGG | - | chr5_1:64255794-64255813 | Msa0743740:intron | 35.0% |
| ! | AATGCTGCTTCTATTTCCAT+TGG | + | chr5_1:64255813-64255832 | None:intergenic | 35.0% |
| ! | CTCAAACAAATCTTGGTTCT+GGG | - | chr5_1:64255850-64255869 | Msa0743740:intron | 35.0% |
| !! | TCAAACAAATCTTGGTTCTG+GGG | - | chr5_1:64255851-64255870 | Msa0743740:intron | 35.0% |
| CAAATCAATTCATTATGGCG+GGG | + | chr5_1:64255886-64255905 | None:intergenic | 35.0% | |
| !! | GTTGTAGAACAAACTTGTTG+AGG | - | chr5_1:64255921-64255940 | Msa0743740:intron | 35.0% |
| AACAACACTCATGACACAAT+TGG | + | chr5_1:64256030-64256049 | None:intergenic | 35.0% | |
| ! | GCCGAAGAAAGTTGTTATTA+TGG | - | chr5_1:64256077-64256096 | Msa0743740:intron | 35.0% |
| GGATAAGAATGGTTATGTAG+GGG | - | chr5_1:64256148-64256167 | Msa0743740:intron | 35.0% | |
| ! | GTTGATTTCGTTGCATACTT+TGG | + | chr5_1:64256193-64256212 | None:intergenic | 35.0% |
| AACCCAAGATGAACATTCAA+AGG | - | chr5_1:64256210-64256229 | Msa0743740:CDS | 35.0% | |
| ! | GACTCATTTTCTTTTCATGG+AGG | + | chr5_1:64256273-64256292 | None:intergenic | 35.0% |
| ! | GCAGGTAACAAAACTCATTT+TGG | - | chr5_1:64256465-64256484 | Msa0743740:CDS | 35.0% |
| TCTTAGGTAAACATGATCAC+AGG | - | chr5_1:64256492-64256511 | Msa0743740:CDS | 35.0% | |
| TGCTTGAGTGTTATCATGTT+TGG | - | chr5_1:64256634-64256653 | Msa0743740:CDS | 35.0% | |
| TAATCTTACAAGAAGGTCTG+CGG | - | chr5_1:64256972-64256991 | Msa0743740:CDS | 35.0% | |
| ATTCAACCCAAAATCGAACC+TGG | - | chr5_1:64254663-64254682 | Msa0743740:CDS | 40.0% | |
| TTCAACCCAAAATCGAACCT+GGG | - | chr5_1:64254664-64254683 | Msa0743740:CDS | 40.0% | |
| !! | TTCAAGTTTGTTGCTAGGGT+TGG | + | chr5_1:64254703-64254722 | None:intergenic | 40.0% |
| TTCACTTGGAAAGACTCTCA+AGG | - | chr5_1:64254796-64254815 | Msa0743740:CDS | 40.0% | |
| GTTGTGCTAAGAGGAATGAT+TGG | - | chr5_1:64255062-64255081 | Msa0743740:intron | 40.0% | |
| !!! | AGCATGAGATTTTGGAGTTG+AGG | - | chr5_1:64255093-64255112 | Msa0743740:intron | 40.0% |
| TGATAGCAATGTTCGTGATG+AGG | - | chr5_1:64255139-64255158 | Msa0743740:intron | 40.0% | |
| ACAAAGCAAGGTTCGTGTAA+TGG | - | chr5_1:64255163-64255182 | Msa0743740:intron | 40.0% | |
| GGAGGGTGATAAGAATGATT+TGG | - | chr5_1:64255184-64255203 | Msa0743740:intron | 40.0% | |
| TGGAAACTATAAGTGAGCTG+AGG | - | chr5_1:64255258-64255277 | Msa0743740:intron | 40.0% | |
| GAAAGAAAACGATAAGCGGA+CGG | - | chr5_1:64255280-64255299 | Msa0743740:intron | 40.0% | |
| GGACGGTTGAGATATTACTT+GGG | - | chr5_1:64255297-64255316 | Msa0743740:intron | 40.0% | |
| ATCCAACCTTGAAACTCTTC+CGG | + | chr5_1:64255351-64255370 | None:intergenic | 40.0% | |
| !! | TTTTCAAGAGAACCAGGAAG+AGG | - | chr5_1:64255382-64255401 | Msa0743740:intron | 40.0% |
| ATAGAAACTCGACTAGCACT+AGG | - | chr5_1:64255666-64255685 | Msa0743740:intron | 40.0% | |
| CGACTAGCACTAGGATATTA+TGG | - | chr5_1:64255675-64255694 | Msa0743740:intron | 40.0% | |
| CATGGAATAAAGGTAAAGCC+GGG | + | chr5_1:64255740-64255759 | None:intergenic | 40.0% | |
| !! | GGCAATAGCTTGTTTGTCTT+AGG | + | chr5_1:64255766-64255785 | None:intergenic | 40.0% |
| ATCACATACAGCTAAAGGAG+AGG | + | chr5_1:64255787-64255806 | None:intergenic | 40.0% | |
| GTGGAACCTCAAACAAATCT+TGG | - | chr5_1:64255843-64255862 | Msa0743740:intron | 40.0% | |
| ! | CCAGAACCAAGATTTGTTTG+AGG | + | chr5_1:64255852-64255871 | None:intergenic | 40.0% |
| CCTCAAACAAATCTTGGTTC+TGG | - | chr5_1:64255849-64255868 | Msa0743740:intron | 40.0% | |
| ! | GTGTCATGAGTGTTGTTCAA+AGG | - | chr5_1:64256033-64256052 | Msa0743740:intron | 40.0% |
| ! | CATGAGTGTTGTTCAAAGGT+TGG | - | chr5_1:64256037-64256056 | Msa0743740:intron | 40.0% |
| ! | AGTGTTGTTCAAAGGTTGGA+TGG | - | chr5_1:64256041-64256060 | Msa0743740:intron | 40.0% |
| GTTATTATGGAAGGGTCTAG+TGG | - | chr5_1:64256090-64256109 | Msa0743740:intron | 40.0% | |
| TAAGAATGGTTATGTAGGGG+AGG | - | chr5_1:64256151-64256170 | Msa0743740:intron | 40.0% | |
| GTTATGTAGGGGAGGTTAAA+TGG | - | chr5_1:64256159-64256178 | Msa0743740:intron | 40.0% | |
| GGGAACAGTGAACATGAAAA+AGG | - | chr5_1:64256702-64256721 | Msa0743740:CDS | 40.0% | |
| CATCGTTGTTGTCGTTATCA+AGG | + | chr5_1:64256744-64256763 | None:intergenic | 40.0% | |
| ACGACAACAACGATGATGAA+TGG | - | chr5_1:64256749-64256768 | Msa0743740:CDS | 40.0% | |
| GATGAATGGTGTATGTCTCA+AGG | - | chr5_1:64256763-64256782 | Msa0743740:CDS | 40.0% | |
| TGGAATTGCTGTGAAGAATG+AGG | - | chr5_1:64256810-64256829 | Msa0743740:CDS | 40.0% | |
| TGAACTGCTAGTGATGAACT+TGG | + | chr5_1:64256844-64256863 | None:intergenic | 40.0% | |
| TCATCACTAGCAGTTCAACT+AGG | - | chr5_1:64256847-64256866 | Msa0743740:CDS | 40.0% | |
| AGGAACCAAGTTTGCAAATG+CGG | - | chr5_1:64256867-64256886 | Msa0743740:CDS | 40.0% | |
| GTTAACCGCATTTGCAAACT+TGG | + | chr5_1:64256875-64256894 | None:intergenic | 40.0% | |
| ATCATCAGAGGAAGAAGAAG+TGG | + | chr5_1:64256938-64256957 | None:intergenic | 40.0% | |
| ATTCAACCCAAAATCGAACC+TGG | - | chr5_1:64254663-64254682 | Msa0743740:CDS | 40.0% | |
| TTCAACCCAAAATCGAACCT+GGG | - | chr5_1:64254664-64254683 | Msa0743740:CDS | 40.0% | |
| !! | TTCAAGTTTGTTGCTAGGGT+TGG | + | chr5_1:64254703-64254722 | None:intergenic | 40.0% |
| TTCACTTGGAAAGACTCTCA+AGG | - | chr5_1:64254796-64254815 | Msa0743740:CDS | 40.0% | |
| GTTGTGCTAAGAGGAATGAT+TGG | - | chr5_1:64255062-64255081 | Msa0743740:intron | 40.0% | |
| !!! | AGCATGAGATTTTGGAGTTG+AGG | - | chr5_1:64255093-64255112 | Msa0743740:intron | 40.0% |
| TGATAGCAATGTTCGTGATG+AGG | - | chr5_1:64255139-64255158 | Msa0743740:intron | 40.0% | |
| ACAAAGCAAGGTTCGTGTAA+TGG | - | chr5_1:64255163-64255182 | Msa0743740:intron | 40.0% | |
| GGAGGGTGATAAGAATGATT+TGG | - | chr5_1:64255184-64255203 | Msa0743740:intron | 40.0% | |
| TGGAAACTATAAGTGAGCTG+AGG | - | chr5_1:64255258-64255277 | Msa0743740:intron | 40.0% | |
| GAAAGAAAACGATAAGCGGA+CGG | - | chr5_1:64255280-64255299 | Msa0743740:intron | 40.0% | |
| GGACGGTTGAGATATTACTT+GGG | - | chr5_1:64255297-64255316 | Msa0743740:intron | 40.0% | |
| ATCCAACCTTGAAACTCTTC+CGG | + | chr5_1:64255351-64255370 | None:intergenic | 40.0% | |
| !! | TTTTCAAGAGAACCAGGAAG+AGG | - | chr5_1:64255382-64255401 | Msa0743740:intron | 40.0% |
| ATAGAAACTCGACTAGCACT+AGG | - | chr5_1:64255666-64255685 | Msa0743740:intron | 40.0% | |
| CGACTAGCACTAGGATATTA+TGG | - | chr5_1:64255675-64255694 | Msa0743740:intron | 40.0% | |
| CATGGAATAAAGGTAAAGCC+GGG | + | chr5_1:64255740-64255759 | None:intergenic | 40.0% | |
| !! | GGCAATAGCTTGTTTGTCTT+AGG | + | chr5_1:64255766-64255785 | None:intergenic | 40.0% |
| ATCACATACAGCTAAAGGAG+AGG | + | chr5_1:64255787-64255806 | None:intergenic | 40.0% | |
| GTGGAACCTCAAACAAATCT+TGG | - | chr5_1:64255843-64255862 | Msa0743740:intron | 40.0% | |
| ! | CCAGAACCAAGATTTGTTTG+AGG | + | chr5_1:64255852-64255871 | None:intergenic | 40.0% |
| CCTCAAACAAATCTTGGTTC+TGG | - | chr5_1:64255849-64255868 | Msa0743740:intron | 40.0% | |
| ! | GTGTCATGAGTGTTGTTCAA+AGG | - | chr5_1:64256033-64256052 | Msa0743740:intron | 40.0% |
| ! | CATGAGTGTTGTTCAAAGGT+TGG | - | chr5_1:64256037-64256056 | Msa0743740:intron | 40.0% |
| ! | AGTGTTGTTCAAAGGTTGGA+TGG | - | chr5_1:64256041-64256060 | Msa0743740:intron | 40.0% |
| GTTATTATGGAAGGGTCTAG+TGG | - | chr5_1:64256090-64256109 | Msa0743740:intron | 40.0% | |
| TAAGAATGGTTATGTAGGGG+AGG | - | chr5_1:64256151-64256170 | Msa0743740:intron | 40.0% | |
| GTTATGTAGGGGAGGTTAAA+TGG | - | chr5_1:64256159-64256178 | Msa0743740:intron | 40.0% | |
| GGGAACAGTGAACATGAAAA+AGG | - | chr5_1:64256702-64256721 | Msa0743740:CDS | 40.0% | |
| CATCGTTGTTGTCGTTATCA+AGG | + | chr5_1:64256744-64256763 | None:intergenic | 40.0% | |
| ACGACAACAACGATGATGAA+TGG | - | chr5_1:64256749-64256768 | Msa0743740:CDS | 40.0% | |
| GATGAATGGTGTATGTCTCA+AGG | - | chr5_1:64256763-64256782 | Msa0743740:CDS | 40.0% | |
| TGGAATTGCTGTGAAGAATG+AGG | - | chr5_1:64256810-64256829 | Msa0743740:CDS | 40.0% | |
| TGAACTGCTAGTGATGAACT+TGG | + | chr5_1:64256844-64256863 | None:intergenic | 40.0% | |
| TCATCACTAGCAGTTCAACT+AGG | - | chr5_1:64256847-64256866 | Msa0743740:CDS | 40.0% | |
| AGGAACCAAGTTTGCAAATG+CGG | - | chr5_1:64256867-64256886 | Msa0743740:CDS | 40.0% | |
| GTTAACCGCATTTGCAAACT+TGG | + | chr5_1:64256875-64256894 | None:intergenic | 40.0% | |
| ATCATCAGAGGAAGAAGAAG+TGG | + | chr5_1:64256938-64256957 | None:intergenic | 40.0% | |
| ! | GATGACCCAGGTTCGATTTT+GGG | + | chr5_1:64254672-64254691 | None:intergenic | 45.0% |
| ! | TGATGACCCAGGTTCGATTT+TGG | + | chr5_1:64254673-64254692 | None:intergenic | 45.0% |
| !! | AGTTTGTTGCTAGGGTTGGT+AGG | + | chr5_1:64254699-64254718 | None:intergenic | 45.0% |
| ! | TAGGGATTTGAGACTCAGAG+AGG | - | chr5_1:64254770-64254789 | Msa0743740:CDS | 45.0% |
| ACTCAGAGAGGAGTTTCACT+TGG | - | chr5_1:64254782-64254801 | Msa0743740:CDS | 45.0% | |
| TCGTGATGAGGTACAAAGCA+AGG | - | chr5_1:64255151-64255170 | Msa0743740:intron | 45.0% | |
| AAGCAAGGTTCGTGTAATGG+AGG | - | chr5_1:64255166-64255185 | Msa0743740:intron | 45.0% | |
| ! | AGCAAGGTTCGTGTAATGGA+GGG | - | chr5_1:64255167-64255186 | Msa0743740:intron | 45.0% |
| CGGACGGTTGAGATATTACT+TGG | - | chr5_1:64255296-64255315 | Msa0743740:intron | 45.0% | |
| GAATGACCGGAAGAGTTTCA+AGG | - | chr5_1:64255342-64255361 | Msa0743740:intron | 45.0% | |
| TCAAGGTGCATCATCAGGTA+CGG | - | chr5_1:64255490-64255509 | Msa0743740:intron | 45.0% | |
| AATAAAGGTAAAGCCGGGAG+AGG | + | chr5_1:64255735-64255754 | None:intergenic | 45.0% | |
| !! | AGCAGCATTGACAAGAACTG+TGG | - | chr5_1:64255824-64255843 | Msa0743740:intron | 45.0% |
| GTTGGATGGTATGAGCAAGA+AGG | - | chr5_1:64256055-64256074 | Msa0743740:intron | 45.0% | |
| ! | GTAGCGTCGAGAAAGAGTAT+TGG | - | chr5_1:64256127-64256146 | Msa0743740:intron | 45.0% |
| GGATTGTCCTAGAAATGTCG+CGG | - | chr5_1:64256554-64256573 | Msa0743740:CDS | 45.0% | |
| GCTAGTGATGAACTTGGAGT+TGG | + | chr5_1:64256838-64256857 | None:intergenic | 45.0% | |
| ATCAGAGGAAGAAGAAGTGG+AGG | + | chr5_1:64256935-64256954 | None:intergenic | 45.0% | |
| ! | GATGACCCAGGTTCGATTTT+GGG | + | chr5_1:64254672-64254691 | None:intergenic | 45.0% |
| ! | TGATGACCCAGGTTCGATTT+TGG | + | chr5_1:64254673-64254692 | None:intergenic | 45.0% |
| !! | AGTTTGTTGCTAGGGTTGGT+AGG | + | chr5_1:64254699-64254718 | None:intergenic | 45.0% |
| ! | TAGGGATTTGAGACTCAGAG+AGG | - | chr5_1:64254770-64254789 | Msa0743740:CDS | 45.0% |
| ACTCAGAGAGGAGTTTCACT+TGG | - | chr5_1:64254782-64254801 | Msa0743740:CDS | 45.0% | |
| TCGTGATGAGGTACAAAGCA+AGG | - | chr5_1:64255151-64255170 | Msa0743740:intron | 45.0% | |
| AAGCAAGGTTCGTGTAATGG+AGG | - | chr5_1:64255166-64255185 | Msa0743740:intron | 45.0% | |
| ! | AGCAAGGTTCGTGTAATGGA+GGG | - | chr5_1:64255167-64255186 | Msa0743740:intron | 45.0% |
| CGGACGGTTGAGATATTACT+TGG | - | chr5_1:64255296-64255315 | Msa0743740:intron | 45.0% | |
| GAATGACCGGAAGAGTTTCA+AGG | - | chr5_1:64255342-64255361 | Msa0743740:intron | 45.0% | |
| TCAAGGTGCATCATCAGGTA+CGG | - | chr5_1:64255490-64255509 | Msa0743740:intron | 45.0% | |
| AATAAAGGTAAAGCCGGGAG+AGG | + | chr5_1:64255735-64255754 | None:intergenic | 45.0% | |
| !! | AGCAGCATTGACAAGAACTG+TGG | - | chr5_1:64255824-64255843 | Msa0743740:intron | 45.0% |
| GTTGGATGGTATGAGCAAGA+AGG | - | chr5_1:64256055-64256074 | Msa0743740:intron | 45.0% | |
| ! | GTAGCGTCGAGAAAGAGTAT+TGG | - | chr5_1:64256127-64256146 | Msa0743740:intron | 45.0% |
| GGATTGTCCTAGAAATGTCG+CGG | - | chr5_1:64256554-64256573 | Msa0743740:CDS | 45.0% | |
| GCTAGTGATGAACTTGGAGT+TGG | + | chr5_1:64256838-64256857 | None:intergenic | 45.0% | |
| ATCAGAGGAAGAAGAAGTGG+AGG | + | chr5_1:64256935-64256954 | None:intergenic | 45.0% | |
| !!! | AATCATATATATATATATTT+TGG | - | chr5_1:64256533-64256552 | Msa0743740:CDS | 5.0% |
| !!! | AATCATATATATATATATTT+TGG | - | chr5_1:64256533-64256552 | Msa0743740:CDS | 5.0% |
| ! | TTGGTAGGTGATGATGACCC+AGG | + | chr5_1:64254684-64254703 | None:intergenic | 50.0% |
| GACCGGAAGAGTTTCAAGGT+TGG | - | chr5_1:64255346-64255365 | Msa0743740:intron | 50.0% | |
| CGTCAGAAACATCCTCTTCC+TGG | + | chr5_1:64255397-64255416 | None:intergenic | 50.0% | |
| GTAGATGCTCATCGCACTCT+TGG | - | chr5_1:64255431-64255450 | Msa0743740:intron | 50.0% | |
| CTTGCTCTGTAGCTGAGTAC+TGG | + | chr5_1:64255465-64255484 | None:intergenic | 50.0% | |
| CAGTACTCAGCTACAGAGCA+AGG | - | chr5_1:64255463-64255482 | Msa0743740:intron | 50.0% | |
| AAGCCTGTTCATTCCTCTCC+CGG | - | chr5_1:64255719-64255738 | Msa0743740:intron | 50.0% | |
| TTGGTTGCCGCGACATTTCT+AGG | + | chr5_1:64256564-64256583 | None:intergenic | 50.0% | |
| ! | TTGGTAGGTGATGATGACCC+AGG | + | chr5_1:64254684-64254703 | None:intergenic | 50.0% |
| GACCGGAAGAGTTTCAAGGT+TGG | - | chr5_1:64255346-64255365 | Msa0743740:intron | 50.0% | |
| CGTCAGAAACATCCTCTTCC+TGG | + | chr5_1:64255397-64255416 | None:intergenic | 50.0% | |
| GTAGATGCTCATCGCACTCT+TGG | - | chr5_1:64255431-64255450 | Msa0743740:intron | 50.0% | |
| CTTGCTCTGTAGCTGAGTAC+TGG | + | chr5_1:64255465-64255484 | None:intergenic | 50.0% | |
| CAGTACTCAGCTACAGAGCA+AGG | - | chr5_1:64255463-64255482 | Msa0743740:intron | 50.0% | |
| AAGCCTGTTCATTCCTCTCC+CGG | - | chr5_1:64255719-64255738 | Msa0743740:intron | 50.0% | |
| TTGGTTGCCGCGACATTTCT+AGG | + | chr5_1:64256564-64256583 | None:intergenic | 50.0% | |
| CTACAGAGCAAGGACGCTCA+AGG | - | chr5_1:64255473-64255492 | Msa0743740:intron | 55.0% | |
| GACGCTCAAGGTGCATCATC+AGG | - | chr5_1:64255485-64255504 | Msa0743740:intron | 55.0% | |
| GGGAGAGGAATGAACAGGCT+TGG | + | chr5_1:64255720-64255739 | None:intergenic | 55.0% | |
| AAGCCGGGAGAGGAATGAAC+AGG | + | chr5_1:64255725-64255744 | None:intergenic | 55.0% | |
| CTACAGAGCAAGGACGCTCA+AGG | - | chr5_1:64255473-64255492 | Msa0743740:intron | 55.0% | |
| GACGCTCAAGGTGCATCATC+AGG | - | chr5_1:64255485-64255504 | Msa0743740:intron | 55.0% | |
| GGGAGAGGAATGAACAGGCT+TGG | + | chr5_1:64255720-64255739 | None:intergenic | 55.0% | |
| AAGCCGGGAGAGGAATGAAC+AGG | + | chr5_1:64255725-64255744 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 64254657 | 64257023 | 64254657 | ID=Msa0743740;Name=Msa0743740 |
| chr5_1 | mRNA | 64254657 | 64257023 | 64254657 | ID=Msa0743740-mRNA-1;Parent=Msa0743740;Name=Msa0743740-mRNA-1;_AED=0.42;_eAED=0.42;_QI=0|0|0|1|1|1|2|0|391 |
| chr5_1 | exon | 64256174 | 64257023 | 64256174 | ID=Msa0743740-mRNA-1:exon:18998;Parent=Msa0743740-mRNA-1 |
| chr5_1 | exon | 64254657 | 64254982 | 64254657 | ID=Msa0743740-mRNA-1:exon:18997;Parent=Msa0743740-mRNA-1 |
| chr5_1 | CDS | 64256174 | 64257023 | 64256174 | ID=Msa0743740-mRNA-1:cds;Parent=Msa0743740-mRNA-1 |
| chr5_1 | CDS | 64254657 | 64254982 | 64254657 | ID=Msa0743740-mRNA-1:cds;Parent=Msa0743740-mRNA-1 |
| Gene Sequence |
| Protein sequence |
