AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0824820

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0824820 MtrunA17_Chr3g0136421 51.974 152 56 4 120 261 171 315 2.50e-36 134
Msa0824820 MtrunA17_Chr1g0150741 76.471 85 15 2 120 204 171 250 4.10e-34 129
Msa0824820 MtrunA17_Chr3g0130501 91.379 58 5 0 140 197 1 58 4.81e-30 112
Msa0824820 MtrunA17_Chr2g0300711 46.405 153 62 5 120 261 168 311 5.39e-30 119
Msa0824820 MtrunA17_Chr4g0070411 49.254 134 59 4 120 253 174 298 9.38e-30 118
Msa0824820 MtrunA17_Chr5g0416011 69.620 79 19 2 120 197 228 302 1.51e-27 112
Msa0824820 MtrunA17_Chr8g0362661 74.286 70 17 1 129 197 231 300 8.68e-27 110
Msa0824820 MtrunA17_Chr7g0245571 65.385 78 24 1 120 197 180 254 3.40e-26 107
Msa0824820 MtrunA17_Chr6g0452761 67.089 79 21 2 120 197 225 299 1.12e-25 107
Msa0824820 MtrunA17_Chr5g0408941 61.176 85 27 2 120 204 181 259 2.48e-25 105
Msa0824820 MtrunA17_Chr8g0380441 76.562 64 15 0 134 197 173 236 4.46e-25 103
Msa0824820 MtrunA17_Chr7g0216551 63.291 79 25 2 120 197 215 290 6.55e-25 104
Msa0824820 MtrunA17_Chr4g0064201 62.821 78 25 1 120 197 203 276 7.00e-25 104
Msa0824820 MtrunA17_Chr8g0388941 66.667 69 23 0 129 197 166 234 8.07e-25 103
Msa0824820 MtrunA17_Chr4g0069061 63.380 71 26 0 127 197 5 75 1.03e-24 99.4
Msa0824820 MtrunA17_Chr6g0453001 64.557 79 24 2 120 197 146 221 1.18e-24 103
Msa0824820 MtrunA17_Chr8g0344141 67.123 73 22 1 132 204 177 247 2.00e-24 103
Msa0824820 MtrunA17_Chr3g0104091 64.557 79 24 2 120 197 145 220 3.15e-24 102
Msa0824820 MtrunA17_Chr2g0328211 67.188 64 21 0 134 197 166 229 2.67e-23 98.6
Msa0824820 MtrunA17_Chr7g0238671 72.581 62 17 0 136 197 180 241 3.18e-23 99.0
Msa0824820 MtrunA17_Chr2g0328171 68.750 64 20 0 134 197 179 242 6.81e-23 98.2
Msa0824820 MtrunA17_Chr4g0055301 55.696 79 31 2 120 197 161 236 4.03e-22 95.9
Msa0824820 MtrunA17_Chr5g0435211 65.625 64 22 0 134 197 180 243 1.09e-21 94.7
Msa0824820 MtrunA17_Chr4g0060531 55.072 69 31 0 129 197 181 249 2.33e-21 93.6
Msa0824820 MtrunA17_Chr3g0111631 65.625 64 22 0 134 197 181 244 3.55e-21 93.2
Msa0824820 MtrunA17_Chr5g0416311 55.128 78 32 1 120 197 168 242 4.24e-21 93.2
Msa0824820 MtrunA17_Chr5g0399981 57.746 71 29 1 128 197 160 230 2.37e-20 90.5
Msa0824820 MtrunA17_Chr5g0406841 62.500 64 24 0 134 197 251 314 7.13e-20 89.7
Msa0824820 MtrunA17_Chr8g0370571 47.059 85 43 1 120 204 147 229 7.51e-20 89.0
Msa0824820 MtrunA17_Chr3g0143961 64.615 65 22 1 134 197 163 227 1.02e-19 89.0
Msa0824820 MtrunA17_Chr8g0370461 59.155 71 27 1 134 204 197 265 1.82e-19 88.6
Msa0824820 MtrunA17_Chr5g0441021 60.938 64 25 0 134 197 173 236 2.86e-19 87.8
Msa0824820 MtrunA17_Chr3g0143951 57.971 69 29 0 129 197 179 247 2.90e-19 87.8
Msa0824820 MtrunA17_Chr3g0093381 59.375 64 26 0 134 197 211 274 6.35e-19 87.0
Msa0824820 MtrunA17_Chr4g0031541 60.938 64 25 0 134 197 187 250 1.25e-18 85.9
Msa0824820 MtrunA17_Chr5g0443691 64.615 65 22 1 134 197 196 260 1.58e-18 85.5
Msa0824820 MtrunA17_Chr8g0336581 53.521 71 32 1 128 197 173 243 1.72e-18 85.9
Msa0824820 MtrunA17_Chr1g0153851 54.321 81 34 2 128 207 139 217 2.23e-18 84.3
Msa0824820 MtrunA17_Chr2g0312931 90.476 42 4 0 250 291 48 89 3.42e-18 84.3
Msa0824820 MtrunA17_Chr1g0181821 54.118 85 34 2 114 197 154 234 3.88e-18 84.3
Msa0824820 MtrunA17_Chr5g0448661 56.250 64 28 0 134 197 205 268 4.00e-18 84.3
Msa0824820 MtrunA17_Chr4g0076271 48.864 88 42 2 121 207 54 139 5.17e-18 82.4
Msa0824820 MtrunA17_Chr1g0213991 63.077 65 23 1 134 197 193 257 6.14e-18 84.3
Msa0824820 MtrunA17_Chr7g0263521 55.844 77 33 1 122 197 157 233 2.24e-17 82.0
Msa0824820 MtrunA17_Chr4g0074651 52.941 85 35 2 114 197 203 283 2.82e-17 82.0
Msa0824820 MtrunA17_Chr4g0031591 57.812 64 27 0 134 197 197 260 3.03e-17 82.0
Msa0824820 MtrunA17_Chr7g0237401 61.538 65 24 1 134 197 189 253 4.14e-17 81.6
Msa0824820 MtrunA17_Chr8g0376431 85.714 42 6 0 250 291 48 89 4.95e-17 80.9
Msa0824820 MtrunA17_Chr4g0031561 59.375 64 26 0 134 197 198 261 6.57e-17 80.9
Msa0824820 MtrunA17_Chr2g0286281 61.538 65 24 1 134 197 185 249 6.91e-17 81.3
Msa0824820 MtrunA17_Chr2g0327471 61.538 65 24 1 134 197 187 251 7.09e-17 80.9
Msa0824820 MtrunA17_Chr4g0066761 56.250 64 28 0 134 197 168 231 8.73e-17 80.1
Msa0824820 MtrunA17_Chr3g0098391 36.842 190 86 9 140 306 1 179 1.13e-16 78.6
Msa0824820 MtrunA17_Chr7g0251771 47.059 85 40 2 114 197 131 211 1.68e-16 79.7
Msa0824820 MtrunA17_Chr4g0071481 53.846 65 30 0 133 197 225 289 1.87e-16 79.7
Msa0824820 MtrunA17_Chr2g0327531 60.000 65 25 1 134 197 139 203 2.10e-16 79.0
Msa0824820 MtrunA17_Chr4g0031601 60.656 61 23 1 131 190 193 253 2.40e-16 79.3
Msa0824820 MtrunA17_Chr1g0180951 55.714 70 30 1 129 197 187 256 2.77e-16 79.3
Msa0824820 MtrunA17_Chr8g0376521 80.952 42 8 0 250 291 47 88 4.16e-16 75.9
Msa0824820 MtrunA17_Chr8g0342071 54.667 75 29 2 129 198 540 614 4.83e-16 79.0
Msa0824820 MtrunA17_Chr8g0376451 78.571 42 9 0 250 291 47 88 6.00e-16 77.8
Msa0824820 MtrunA17_Chr5g0413981 48.529 68 32 1 133 197 158 225 6.97e-16 77.4
Msa0824820 MtrunA17_Chr2g0299301 51.429 70 33 1 129 197 1150 1219 1.06e-15 78.2
Msa0824820 MtrunA17_Chr2g0327511 60.000 65 25 1 134 197 204 268 1.12e-15 77.4
Msa0824820 MtrunA17_Chr8g0376471 80.952 42 8 0 250 291 47 88 1.21e-15 77.0
Msa0824820 MtrunA17_Chr4g0031571 39.344 122 62 3 134 253 200 311 1.34e-15 77.0
Msa0824820 MtrunA17_Chr7g0264461 52.857 70 32 1 129 197 192 261 1.59e-15 77.0
Msa0824820 MtrunA17_Chr7g0262521 52.239 67 31 1 127 192 435 501 1.98e-15 77.0
Msa0824820 MtrunA17_Chr8g0376481 80.952 42 8 0 250 291 103 144 3.71e-15 75.9
Msa0824820 MtrunA17_Chr4g0017241 47.945 73 37 1 129 200 579 651 5.98e-15 75.9
Msa0824820 MtrunA17_Chr4g0071221 54.688 64 28 1 134 196 635 698 8.25e-15 75.5
Msa0824820 MtrunA17_Chr8g0364671 47.761 67 32 1 134 197 156 222 8.95e-15 74.3
Msa0824820 MtrunA17_Chr1g0183041 51.471 68 32 1 129 195 442 509 1.64e-14 74.3
Msa0824820 MtrunA17_Chr7g0225991 55.385 65 28 1 134 197 18 82 1.72e-14 69.7
Msa0824820 MtrunA17_Chr2g0292501 49.231 65 32 1 134 197 614 678 3.21e-14 73.6
Msa0824820 MtrunA17_Chr2g0288121 56.000 75 24 4 134 204 138 207 3.41e-14 72.4
Msa0824820 MtrunA17_Chr1g0194541 51.515 66 31 1 133 197 387 452 4.83e-14 72.8
Msa0824820 MtrunA17_Chr2g0314861 45.455 77 38 3 124 197 3 78 7.48e-14 70.5
Msa0824820 MtrunA17_Chr7g0270121 55.000 60 26 1 134 192 477 536 1.05e-13 72.0
Msa0824820 MtrunA17_Chr8g0371311 48.485 66 33 1 133 197 172 237 1.09e-13 71.2
Msa0824820 MtrunA17_Chr2g0320111 38.017 121 68 4 134 253 192 306 1.39e-13 70.9
Msa0824820 MtrunA17_Chr7g0245131 49.231 65 32 1 134 197 629 693 1.79e-13 71.2
Msa0824820 MtrunA17_Chr5g0423061 46.753 77 38 2 126 202 401 474 2.27e-13 70.9
Msa0824820 MtrunA17_Chr2g0315141 44.944 89 48 1 134 222 125 212 2.48e-13 70.1
Msa0824820 MtrunA17_Chr7g0219751 50.000 66 31 2 134 197 52 117 2.71e-13 66.2
Msa0824820 MtrunA17_Chr7g0219581 50.000 66 31 2 134 197 52 117 3.97e-13 68.9
Msa0824820 MtrunA17_Chr4g0049561 49.315 73 34 2 129 198 436 508 6.64e-13 69.3
Msa0824820 MtrunA17_Chr7g0219621 28.022 182 110 8 134 312 18 181 7.60e-13 67.0
Msa0824820 MtrunA17_Chr5g0443531 47.368 76 38 2 123 197 762 836 8.28e-13 69.3
Msa0824820 MtrunA17_Chr7g0219571 50.000 66 31 2 134 197 628 693 9.61e-13 68.9
Msa0824820 MtrunA17_Chr8g0376491 71.429 42 12 0 250 291 47 88 9.92e-13 68.2
Msa0824820 MtrunA17_Chr3g0111581 56.897 58 25 0 134 191 174 231 1.15e-12 68.2
Msa0824820 MtrunA17_Chr8g0359691 52.308 65 29 2 134 197 759 822 1.20e-12 68.9
Msa0824820 MtrunA17_Chr4g0030441 46.970 66 34 1 133 197 592 657 1.30e-12 68.6
Msa0824820 MtrunA17_Chr1g0190581 46.970 66 34 1 133 197 616 681 1.36e-12 68.6
Msa0824820 MtrunA17_Chr7g0219601 48.485 66 32 2 134 197 612 677 1.56e-12 68.6
Msa0824820 MtrunA17_Chr7g0219651 50.000 66 31 2 134 197 617 682 1.73e-12 68.6
Msa0824820 MtrunA17_Chr7g0219651 48.485 66 32 2 134 197 1613 1678 1.18e-11 65.9
Msa0824820 MtrunA17_Chr2g0318301 46.154 65 34 1 134 197 595 659 1.85e-12 68.2
Msa0824820 MtrunA17_Chr6g0468691 47.692 65 33 1 134 197 590 654 1.95e-12 68.2
Msa0824820 MtrunA17_Chr6g0485721 45.333 75 39 2 124 197 181 254 2.23e-12 67.4
Msa0824820 MtrunA17_Chr2g0314881 46.053 76 38 3 123 197 314 387 2.25e-12 67.8
Msa0824820 MtrunA17_Chr2g0315151 48.485 66 32 2 133 197 760 824 3.55e-12 67.4
Msa0824820 MtrunA17_Chr5g0443121 50.794 63 30 1 132 193 276 338 4.01e-12 67.0
Msa0824820 MtrunA17_Chr2g0326901 50.877 57 27 1 133 188 321 377 4.05e-12 67.0
Msa0824820 MtrunA17_Chr2g0327671 45.455 66 35 1 133 197 595 660 4.12e-12 67.0
Msa0824820 MtrunA17_Chr2g0314201 45.714 70 37 1 129 197 96 165 4.28e-12 65.5
Msa0824820 MtrunA17_Chr5g0438071 50.769 65 30 2 134 197 755 818 5.61e-12 66.6
Msa0824820 MtrunA17_Chr7g0274261 46.154 65 34 1 134 197 622 686 6.24e-12 66.6
Msa0824820 MtrunA17_Chr2g0314911 50.769 65 30 2 134 197 757 820 6.69e-12 66.6
Msa0824820 MtrunA17_Chr8g0379931 47.692 65 32 2 134 197 802 865 7.18e-12 66.6
Msa0824820 MtrunA17_Chr2g0314821 49.231 65 31 2 134 197 759 822 7.33e-12 66.6
Msa0824820 MtrunA17_Chr7g0259211 50.000 64 31 1 130 192 379 442 7.80e-12 66.2
Msa0824820 MtrunA17_Chr5g0413511 52.727 55 25 1 133 186 151 205 8.82e-12 65.5
Msa0824820 MtrunA17_Chr2g0315061 49.231 65 31 2 134 197 132 195 9.39e-12 65.5
Msa0824820 MtrunA17_Chr6g0485761 47.692 65 33 1 124 187 378 442 9.68e-12 65.9
Msa0824820 MtrunA17_Chr7g0271451 50.000 60 29 1 129 187 285 344 1.08e-11 65.5
Msa0824820 MtrunA17_Chr1g0165521 44.286 70 38 1 129 197 550 619 1.29e-11 65.5
Msa0824820 MtrunA17_Chr4g0025961 48.485 66 32 2 134 197 621 686 1.36e-11 65.5
Msa0824820 MtrunA17_Chr4g0069251 50.000 60 29 1 129 187 269 328 1.44e-11 65.1
Msa0824820 MtrunA17_Chr6g0455321 46.970 66 33 2 134 197 629 694 1.49e-11 65.5
Msa0824820 MtrunA17_Chr8g0365311 40.000 100 51 3 91 186 158 252 1.56e-11 63.5
Msa0824820 MtrunA17_Chr1g0196391 48.438 64 32 1 130 192 390 453 1.76e-11 65.1
Msa0824820 MtrunA17_Chr8g0361611 42.857 70 39 1 129 197 537 606 1.86e-11 65.1
Msa0824820 MtrunA17_Chr4g0023201 45.455 66 35 1 122 186 7 72 2.11e-11 60.5
Msa0824820 MtrunA17_Chr2g0312561 50.725 69 32 2 130 197 134 201 2.18e-11 64.3
Msa0824820 MtrunA17_Chr1g0202711 40.845 71 41 1 128 197 591 661 2.18e-11 65.1
Msa0824820 MtrunA17_Chr3g0111551 56.897 58 24 1 134 190 164 221 2.23e-11 63.9
Msa0824820 MtrunA17_Chr5g0412141 42.857 70 39 1 131 199 228 297 2.66e-11 64.3
Msa0824820 MtrunA17_Chr4g0073471 44.118 68 37 1 121 187 374 441 3.12e-11 64.3
Msa0824820 MtrunA17_Chr8g0352381 42.424 66 37 1 129 193 619 684 3.48e-11 64.3
Msa0824820 MtrunA17_Chr4g0023221 48.485 66 33 1 122 186 813 878 3.49e-11 64.3
Msa0824820 MtrunA17_Chr8g0373501 48.214 56 28 1 133 187 429 484 3.87e-11 63.9
Msa0824820 MtrunA17_Chr5g0403891 45.000 60 32 1 129 187 344 403 4.36e-11 63.9
Msa0824820 MtrunA17_Chr1g0201611 49.057 53 27 0 134 186 199 251 5.36e-11 63.2
Msa0824820 MtrunA17_Chr8g0365691 46.970 66 33 2 133 197 404 468 7.59e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0824820 AT2G26290.1 68.235 85 22 2 120 204 177 256 4.01e-29 116
Msa0824820 AT2G05940.1 70.513 78 20 1 120 197 176 250 1.60e-28 115
Msa0824820 AT5G01020.1 66.667 78 23 1 120 197 158 232 3.10e-26 108
Msa0824820 AT5G35580.1 69.565 69 21 0 129 197 171 239 9.97e-26 107
Msa0824820 AT5G35580.2 69.565 69 21 0 129 197 183 251 1.15e-25 107
Msa0824820 AT5G56460.1 65.385 78 24 1 120 197 168 242 7.89e-25 103
Msa0824820 AT1G61590.1 60.000 85 29 2 120 204 188 267 4.13e-24 102
Msa0824820 AT3G28690.1 63.291 79 24 2 120 197 118 192 5.30e-24 101
Msa0824820 AT3G28690.3 63.291 79 24 2 120 197 167 241 7.72e-24 101
Msa0824820 AT3G28690.2 63.291 79 24 2 120 197 218 292 1.08e-23 101
Msa0824820 AT2G28930.1 46.341 123 54 5 134 253 185 298 2.67e-23 100
Msa0824820 AT5G15080.1 65.823 79 22 2 120 197 234 308 2.81e-23 100
Msa0824820 AT2G28930.2 46.341 123 54 5 134 253 174 287 3.29e-23 99.8
Msa0824820 AT1G07570.4 67.188 64 21 0 134 197 57 120 3.42e-23 97.8
Msa0824820 AT2G28930.3 46.341 123 54 5 134 253 177 290 3.62e-23 99.4
Msa0824820 AT2G07180.1 65.217 69 24 0 129 197 185 253 8.17e-23 98.6
Msa0824820 AT2G07180.2 65.217 69 24 0 129 197 185 253 8.17e-23 98.6
Msa0824820 AT3G01300.1 64.557 79 23 2 120 197 228 302 1.09e-22 98.6
Msa0824820 AT1G07570.1 67.188 64 21 0 134 197 173 236 1.77e-22 97.4
Msa0824820 AT1G07570.5 67.188 64 21 0 134 197 173 236 1.77e-22 97.4
Msa0824820 AT1G07570.2 67.188 64 21 0 134 197 173 236 1.77e-22 97.4
Msa0824820 AT1G26970.2 57.692 78 28 2 120 197 61 133 2.33e-22 95.5
Msa0824820 AT1G07570.3 67.188 64 21 0 134 197 184 247 2.71e-22 97.1
Msa0824820 AT1G74490.1 57.692 78 30 1 120 197 177 251 4.97e-22 95.9
Msa0824820 AT1G14370.1 57.692 78 30 1 120 197 178 252 8.41e-22 95.5
Msa0824820 AT5G02290.2 65.625 64 22 0 134 197 173 236 9.16e-22 95.1
Msa0824820 AT5G02290.1 65.625 64 22 0 134 197 173 236 9.16e-22 95.1
Msa0824820 AT1G26970.1 57.692 78 28 2 120 197 176 248 1.14e-21 95.1
Msa0824820 AT2G02800.1 55.128 78 32 1 120 197 175 249 4.17e-21 93.6
Msa0824820 AT2G02800.2 55.128 78 32 1 120 197 175 249 4.17e-21 93.6
Msa0824820 AT1G69790.2 56.410 78 29 2 120 197 165 237 8.25e-21 92.4
Msa0824820 AT1G69790.1 56.410 78 29 2 120 197 176 248 1.03e-20 92.0
Msa0824820 AT3G55450.2 55.128 78 35 0 120 197 190 267 2.03e-20 91.7
Msa0824820 AT3G55450.1 55.128 78 35 0 120 197 153 230 2.17e-20 91.3
Msa0824820 AT3G26940.1 60.000 80 31 1 119 197 154 233 4.48e-20 90.9
Msa0824820 AT3G20530.2 64.615 65 22 1 134 197 179 243 1.28e-19 88.2
Msa0824820 AT1G72540.1 56.962 79 32 1 129 207 179 255 1.47e-19 89.4
Msa0824820 AT4G35600.2 57.971 69 29 0 129 197 184 252 1.59e-19 89.0
Msa0824820 AT4G35600.1 57.971 69 29 0 129 197 183 251 1.66e-19 89.0
Msa0824820 AT3G20530.1 64.615 65 22 1 134 197 179 243 3.04e-19 87.8
Msa0824820 AT5G47070.1 57.971 69 27 1 129 197 185 251 3.30e-19 88.2
Msa0824820 AT2G17220.1 51.765 85 38 2 120 204 177 258 4.50e-19 87.8
Msa0824820 AT2G17220.2 51.765 85 38 2 120 204 176 257 4.87e-19 87.4
Msa0824820 AT3G24790.1 37.342 158 79 7 134 289 143 282 6.79e-19 86.7
Msa0824820 AT1G76360.1 51.136 88 38 2 120 207 255 337 7.32e-19 87.4
Msa0824820 AT3G24790.2 37.342 158 79 7 134 289 161 300 8.58e-19 86.7
Msa0824820 AT3G14420.4 88.095 42 5 0 250 291 28 69 1.90e-18 85.1
Msa0824820 AT3G14420.5 80.000 50 9 1 242 291 33 81 2.12e-18 85.1
Msa0824820 AT4G18360.3 84.444 45 7 0 250 294 47 91 2.13e-18 83.6
Msa0824820 AT3G14420.3 88.095 42 5 0 250 291 47 88 2.21e-18 85.1
Msa0824820 AT3G14420.1 88.095 42 5 0 250 291 47 88 2.23e-18 85.1
Msa0824820 AT3G14420.2 88.095 42 5 0 250 291 47 88 2.23e-18 85.1
Msa0824820 AT4G17660.1 58.462 65 25 1 133 197 192 254 2.96e-18 85.1
Msa0824820 AT3G14420.6 88.095 42 5 0 250 291 46 87 3.54e-18 84.7
Msa0824820 AT4G18360.2 84.444 45 7 0 250 294 47 91 3.66e-18 84.0
Msa0824820 AT4G18360.1 84.444 45 7 0 250 294 47 91 6.28e-18 84.0
Msa0824820 AT4G18360.4 84.444 45 7 0 250 294 47 91 6.28e-18 84.0
Msa0824820 AT1G20650.1 50.588 85 37 2 114 197 157 237 1.36e-17 83.2
Msa0824820 AT2G39660.1 60.938 64 25 0 134 197 172 235 1.42e-17 83.2
Msa0824820 AT2G28590.2 61.538 65 24 1 134 197 194 258 1.67e-17 82.4
Msa0824820 AT2G28590.1 61.538 65 24 1 134 197 194 258 3.29e-17 82.4
Msa0824820 AT5G02800.1 53.750 80 36 1 119 197 154 233 4.21e-17 81.6
Msa0824820 AT5G13160.1 61.538 65 24 1 134 197 182 246 4.64e-17 82.0
Msa0824820 AT3G14415.1 83.333 42 7 0 250 291 47 88 5.00e-17 81.3
Msa0824820 AT3G14415.3 83.333 42 7 0 250 291 47 88 5.00e-17 81.3
Msa0824820 AT3G14415.2 83.333 42 7 0 250 291 47 88 5.17e-17 81.3
Msa0824820 AT1G07870.2 59.701 67 22 2 134 197 199 263 1.48e-16 80.9
Msa0824820 AT1G07870.1 59.701 67 22 2 134 197 199 263 1.54e-16 80.5
Msa0824820 AT1G61860.1 58.824 68 27 1 131 197 178 245 2.54e-16 79.3
Msa0824820 AT1G76370.1 56.923 65 27 1 134 197 170 234 3.61e-16 79.0
Msa0824820 AT5G18610.1 61.538 65 24 1 134 197 179 243 4.56e-16 79.3
Msa0824820 AT5G18610.2 61.538 65 24 1 134 197 179 243 4.56e-16 79.3
Msa0824820 AT5G18610.3 61.538 65 24 1 134 197 179 243 4.56e-16 79.3
Msa0824820 AT1G24030.6 50.000 70 32 1 131 197 64 133 5.98e-16 77.0
Msa0824820 AT1G24030.5 50.746 67 30 1 132 195 156 222 6.57e-16 76.6
Msa0824820 AT1G24030.3 50.000 70 32 1 131 197 101 170 9.05e-16 77.0
Msa0824820 AT3G07070.1 56.923 65 27 1 134 197 175 239 9.78e-16 77.8
Msa0824820 AT1G24030.4 50.746 67 30 1 132 195 156 222 1.37e-15 76.3
Msa0824820 AT2G39110.1 55.385 65 28 1 134 197 194 258 1.44e-15 77.4
Msa0824820 AT1G24030.1 50.725 69 31 1 132 197 170 238 1.54e-15 77.0
Msa0824820 AT2G39110.2 55.385 65 28 1 134 197 179 243 1.57e-15 77.4
Msa0824820 AT1G24030.2 50.000 70 32 1 131 197 155 224 1.73e-15 76.6
Msa0824820 AT2G20300.1 54.688 64 28 1 132 194 437 500 2.61e-15 77.4
Msa0824820 AT4G13190.2 56.923 65 27 1 134 197 20 84 2.83e-15 74.7
Msa0824820 AT4G13190.3 56.923 65 27 1 134 197 20 84 2.83e-15 74.7
Msa0824820 AT4G13190.4 56.923 65 27 1 134 197 167 231 2.87e-15 75.5
Msa0824820 AT4G02010.1 53.846 65 29 1 134 197 477 541 3.16e-15 77.0
Msa0824820 AT5G56890.1 50.649 77 36 2 129 204 813 888 3.20e-15 77.0
Msa0824820 AT4G13190.5 56.923 65 27 1 134 197 78 142 5.37e-15 74.7
Msa0824820 AT4G13190.1 56.923 65 27 1 134 197 167 231 8.16e-15 75.1
Msa0824820 AT5G03320.2 45.783 83 44 1 116 197 166 248 1.30e-14 74.7
Msa0824820 AT5G03320.1 45.783 83 44 1 116 197 166 248 1.30e-14 74.7
Msa0824820 AT2G28940.1 54.412 68 30 1 131 197 86 153 2.45e-14 73.2
Msa0824820 AT3G09830.2 51.429 70 33 1 129 197 182 251 2.84e-14 73.6
Msa0824820 AT3G09830.3 51.429 70 33 1 129 197 182 251 2.84e-14 73.6
Msa0824820 AT3G09830.1 51.429 70 33 1 129 197 182 251 2.84e-14 73.6
Msa0824820 AT3G14130.4 68.889 45 14 0 249 293 3 47 3.02e-14 72.8
Msa0824820 AT2G28940.2 54.412 68 30 1 131 197 205 272 4.61e-14 73.2
Msa0824820 AT3G46290.1 48.485 66 33 1 133 197 577 642 5.52e-14 73.2
Msa0824820 AT5G11410.2 32.867 143 79 2 129 261 58 193 5.95e-14 70.9
Msa0824820 AT5G49760.1 50.000 70 34 1 129 197 719 788 1.01e-13 72.4
Msa0824820 AT3G51550.1 48.485 66 33 1 133 197 629 694 1.87e-13 71.6
Msa0824820 AT3G14130.3 68.182 44 14 0 250 293 48 91 1.94e-13 70.9
Msa0824820 AT3G14130.1 68.182 44 14 0 250 293 48 91 1.94e-13 70.9
Msa0824820 AT5G11410.1 36.449 107 61 1 129 235 148 247 2.06e-13 70.5
Msa0824820 AT3G02810.1 43.478 92 47 2 114 204 144 231 3.03e-13 70.9
Msa0824820 AT3G14150.2 69.048 42 13 0 250 291 48 89 4.01e-13 69.7
Msa0824820 AT3G14150.1 69.048 42 13 0 250 291 48 89 4.01e-13 69.7
Msa0824820 AT5G39000.1 42.500 80 44 2 120 197 601 680 4.91e-13 70.5
Msa0824820 AT1G07650.4 46.053 76 39 2 123 197 550 624 4.95e-13 70.5
Msa0824820 AT3G58690.1 39.806 103 56 3 134 235 185 282 5.40e-13 69.7
Msa0824820 AT5G59700.1 46.970 66 34 1 133 197 574 639 5.53e-13 70.1
Msa0824820 AT1G07650.3 46.053 76 39 2 123 197 737 811 5.94e-13 70.1
Msa0824820 AT5G10520.2 46.479 71 37 1 130 199 243 313 6.17e-13 69.3
Msa0824820 AT1G07650.1 46.053 76 39 2 123 197 763 837 6.21e-13 70.1
Msa0824820 AT1G07650.2 46.053 76 39 2 123 197 769 843 6.69e-13 70.1
Msa0824820 AT1G51810.1 50.000 70 34 1 129 197 539 608 7.37e-13 69.7
Msa0824820 AT5G10520.1 46.479 71 37 1 130 199 243 313 7.67e-13 69.3
Msa0824820 AT1G79620.2 47.143 70 36 1 129 197 726 795 1.16e-12 69.3
Msa0824820 AT1G52290.2 48.000 75 37 2 124 197 226 299 1.25e-12 68.6
Msa0824820 AT1G79620.1 51.667 60 28 1 129 187 726 785 1.33e-12 69.3
Msa0824820 AT1G79620.5 47.143 70 36 1 129 197 752 821 1.34e-12 69.3
Msa0824820 AT1G68690.4 45.070 71 38 1 118 187 453 523 1.76e-12 68.6
Msa0824820 AT1G68690.1 45.714 70 37 1 118 186 453 522 1.76e-12 68.6
Msa0824820 AT1G68690.3 45.714 70 37 1 118 186 453 522 1.76e-12 68.6
Msa0824820 AT1G68690.2 45.714 70 37 1 118 186 453 522 1.76e-12 68.6
Msa0824820 AT1G52290.1 48.000 75 37 2 124 197 226 299 1.76e-12 68.6
Msa0824820 AT5G38990.1 41.250 80 45 2 120 197 608 687 2.45e-12 68.2
Msa0824820 AT1G29740.2 41.758 91 49 3 110 197 744 833 3.29e-12 67.8
Msa0824820 AT5G24010.1 44.615 65 35 1 134 197 582 646 3.58e-12 67.8
Msa0824820 AT1G29740.1 41.758 91 49 3 110 197 744 833 3.73e-12 67.8
Msa0824820 AT5G28680.1 47.692 65 33 1 134 197 614 678 3.73e-12 67.8
Msa0824820 AT5G28680.2 47.692 65 33 1 134 197 614 678 3.73e-12 67.8
Msa0824820 AT5G54380.1 46.154 65 34 1 134 197 603 667 4.38e-12 67.4
Msa0824820 AT2G39360.1 43.077 65 36 1 134 197 581 645 4.77e-12 67.4
Msa0824820 AT3G59110.1 48.649 74 34 3 132 204 283 353 5.14e-12 67.0
Msa0824820 AT1G29730.3 42.353 85 45 3 116 197 746 829 6.37e-12 67.0
Msa0824820 AT4G34500.1 54.545 55 24 1 134 187 242 296 7.26e-12 66.2
Msa0824820 AT1G49270.1 44.000 75 39 2 116 187 410 484 7.54e-12 66.6
Msa0824820 AT1G29730.2 42.353 85 45 3 116 197 746 829 7.55e-12 67.0
Msa0824820 AT5G60090.1 61.111 54 20 1 133 186 195 247 7.75e-12 66.2
Msa0824820 AT1G29730.4 41.860 86 45 3 116 197 713 797 8.21e-12 66.6
Msa0824820 AT3G18810.1 49.231 65 32 1 124 187 420 484 8.26e-12 66.6
Msa0824820 AT3G04690.1 46.154 65 34 1 134 197 610 674 8.94e-12 66.6
Msa0824820 AT3G24550.1 43.836 73 40 1 116 187 355 427 1.01e-11 66.2
Msa0824820 AT1G29730.1 41.860 86 45 3 116 197 713 797 1.09e-11 66.2
Msa0824820 AT1G51805.1 45.070 71 38 1 128 197 665 735 1.09e-11 66.2
Msa0824820 AT1G51805.2 45.070 71 38 1 128 197 641 711 1.11e-11 66.2
Msa0824820 AT1G29750.3 55.556 63 26 2 136 197 778 839 1.26e-11 66.2
Msa0824820 AT1G29750.1 55.556 63 26 2 136 197 763 824 1.32e-11 66.2
Msa0824820 AT1G30570.1 43.077 65 36 1 134 197 613 677 1.36e-11 65.9
Msa0824820 AT1G29750.2 55.556 63 26 2 136 197 778 839 1.36e-11 66.2
Msa0824820 AT4G39400.1 42.105 76 39 2 113 187 961 1032 1.59e-11 65.9
Msa0824820 AT4G00340.1 51.429 70 32 2 120 187 560 629 1.63e-11 65.9
Msa0824820 AT4G00340.2 51.429 70 32 2 120 187 539 608 1.66e-11 65.9
Msa0824820 AT5G65530.1 42.254 71 40 1 130 199 234 304 1.89e-11 65.1
Msa0824820 AT2G28960.1 45.714 70 37 1 129 197 530 599 2.31e-11 65.1
Msa0824820 AT2G28960.2 45.714 70 37 1 129 197 662 731 2.46e-11 65.1
Msa0824820 AT1G53440.1 49.231 65 31 2 134 197 762 825 3.14e-11 65.1
Msa0824820 AT1G29720.1 44.286 70 37 2 129 197 761 829 3.33e-11 64.7
Msa0824820 AT5G47850.1 50.000 62 30 1 134 194 548 609 3.88e-11 64.7
Msa0824820 AT2G48010.1 50.000 62 30 1 132 192 379 440 4.05e-11 64.3
Msa0824820 AT5G61350.1 43.836 73 39 2 126 197 616 687 4.53e-11 64.3
Msa0824820 AT5G42440.1 41.333 75 43 1 113 186 154 228 4.60e-11 63.5
Msa0824820 AT1G53430.1 49.231 65 31 2 134 197 764 827 4.63e-11 64.3
Msa0824820 AT1G53430.2 49.231 65 31 2 134 197 723 786 4.71e-11 64.3
Msa0824820 AT4G34440.2 47.692 65 33 1 124 187 395 459 4.77e-11 64.3
Msa0824820 AT4G34440.1 47.692 65 33 1 124 187 395 459 4.77e-11 64.3
Msa0824820 AT1G56145.3 53.448 58 26 1 131 187 674 731 5.36e-11 64.3
Msa0824820 AT1G56145.2 53.448 58 26 1 131 187 804 861 5.50e-11 64.3
Msa0824820 AT1G56145.1 53.448 58 26 1 131 187 777 834 5.98e-11 63.9
Msa0824820 AT3G08760.3 50.000 64 31 1 134 196 279 342 6.84e-11 63.5
Msa0824820 AT3G08760.1 50.000 64 31 1 134 196 279 342 6.84e-11 63.5
Msa0824820 AT3G08760.2 50.000 64 31 1 134 196 279 342 6.84e-11 63.5

Find 56 sgRNAs with CRISPR-Local

Find 172 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATAAGCTTGAGTGAAATTT+TGG 0.127926 5_3:-64392513 None:intergenic
CAAAATTTCACTCAAGCTTA+TGG 0.234740 5_3:+64392514 Msa0824820:CDS
ACCGAGTCCAGTAATATATT+TGG 0.282328 5_3:-64393287 None:intergenic
TTAACTGTTGCAGAGTGTTT+TGG 0.298314 5_3:+64391955 Msa0824820:CDS
CAAAACTCCAAATATATTAC+TGG 0.298856 5_3:+64393280 Msa0824820:CDS
TCCAACTGCTATGCAGAAAA+TGG 0.302540 5_3:+64394804 Msa0824820:CDS
CAGATAAACTTGTAATATAT+AGG 0.325764 5_3:+64393252 Msa0824820:CDS
ACATGTGTTTCTTCTCCTTC+AGG 0.364435 5_3:-64393437 None:intergenic
TAGGATTTGATGTCTAGATT+TGG 0.368041 5_3:+64392077 Msa0824820:intron
CTGCCAATAAGATCAAAATT+TGG 0.375465 5_3:-64394194 None:intergenic
CTCCGGTTGCTCTATTTCTC+AGG 0.376825 5_3:+64391523 Msa0824820:CDS
AAAATTTGGAGGAAAAGATA+TGG 0.381962 5_3:-64394180 None:intergenic
AGATAAACTTGTAATATATA+GGG 0.395105 5_3:+64393253 Msa0824820:CDS
TTGCTCACATCGATAAGAAT+TGG 0.417806 5_3:-64394724 None:intergenic
ACTAGAATGAAAATTGCATT+AGG 0.423344 5_3:+64393197 Msa0824820:CDS
CTACCAAGAGTGATGTGTAT+AGG 0.432412 5_3:+64393906 Msa0824820:CDS
CTCTGTTCTGCTGTTTGAAA+AGG 0.438020 5_3:+64392231 Msa0824820:CDS
CTTATCAGAACCTGTTGATA+AGG 0.450224 5_3:+64391924 Msa0824820:CDS
TGGCAGCGCTGGTAATCATT+CGG 0.454267 5_3:+64394211 Msa0824820:CDS
AACCTGAGAAATAGAGCAAC+CGG 0.455042 5_3:-64391525 None:intergenic
CAGTGGTTGGTGTTCCCTCA+TGG 0.464363 5_3:-64392202 None:intergenic
TTTGATCTTATTGGCAGCGC+TGG 0.469853 5_3:+64394200 Msa0824820:CDS
GACTGGTGCTGCTTATGATC+AGG 0.481385 5_3:+64392154 Msa0824820:CDS
TATGCAGAAAATGGCTCATC+CGG 0.488927 5_3:+64394813 Msa0824820:CDS
AATTGCATTAGGTGCAGCTA+AGG 0.490148 5_3:+64393208 Msa0824820:CDS
CAAGTTTATCTGCTTCATGA+AGG 0.492384 5_3:-64393241 None:intergenic
GAACCTGTTGATAAGGCAAA+AGG 0.495619 5_3:+64391931 Msa0824820:CDS
ACTGAGTCTGTGTCTGATCA+TGG 0.498383 5_3:+64392119 Msa0824820:CDS
TCCTCAGTTGTAGTGCTGAT+AGG 0.499390 5_3:+64394276 Msa0824820:CDS
TATATCATAATTAGCATTGG+CGG 0.499797 5_3:+64394245 Msa0824820:CDS
ACAACTAAACTATCAAACCT+TGG 0.500158 5_3:+64393398 Msa0824820:CDS
GTATTTCTCGTCTTTCTCTC+CGG 0.507075 5_3:+64391506 None:intergenic
TCCAAATATATTACTGGACT+CGG 0.510771 5_3:+64393286 Msa0824820:CDS
GACATGTCAACTACTGTCCT+TGG 0.511523 5_3:+64394751 Msa0824820:CDS
AACCTTGGATTAGCTGAAGA+TGG 0.530476 5_3:+64393413 Msa0824820:CDS
CATGGAAATACAAAGAAGAC+TGG 0.534864 5_3:+64392137 Msa0824820:CDS
GCAGTTGGAGCAATCATGAC+TGG 0.544700 5_3:-64394790 None:intergenic
ACTTATATCATAATTAGCAT+TGG 0.547113 5_3:+64394242 Msa0824820:CDS
ATACCTATACACATCACTCT+TGG 0.550746 5_3:-64393909 None:intergenic
AGAAGGAAAAGAAGCCATGA+GGG 0.552618 5_3:+64392188 Msa0824820:CDS
CAGAAAATGGCTCATCCGGA+GGG 0.562351 5_3:+64394817 Msa0824820:CDS
CTCACATCGATAAGAATTGG+TGG 0.564649 5_3:-64394721 None:intergenic
GACCATCTTCAGCTAATCCA+AGG 0.568609 5_3:-64393415 None:intergenic
ATCAGGCTAATCAAACAAGA+AGG 0.583524 5_3:+64392171 Msa0824820:CDS
CCAATAAGATCAAAATTTGG+AGG 0.584487 5_3:-64394191 None:intergenic
TGGAGCAATCATGACTGGCA+TGG 0.589549 5_3:-64394785 None:intergenic
ACCTATCAGCACTACAACTG+AGG 0.592583 5_3:-64394277 None:intergenic
TTAGCTGAAGATGGTCCTGA+AGG 0.598112 5_3:+64393422 Msa0824820:CDS
AACAGAGTCATACCAGTGGT+TGG 0.615367 5_3:-64392215 None:intergenic
GCAGAAAATGGCTCATCCGG+AGG 0.623190 5_3:+64394816 Msa0824820:CDS
CATGAGGGAACACCAACCAC+TGG 0.634513 5_3:+64392203 Msa0824820:CDS
TGACCATGGTAATGTAGCAG+AGG 0.636205 5_3:-64393174 None:intergenic
ATTGCATTAGGTGCAGCTAA+GGG 0.656681 5_3:+64393209 Msa0824820:CDS
AAGAAGGAAAAGAAGCCATG+AGG 0.668105 5_3:+64392187 Msa0824820:CDS
GATCCTCTGCTACATTACCA+TGG 0.684973 5_3:+64393171 Msa0824820:CDS
GCAGAACAGAGTCATACCAG+TGG 0.764565 5_3:-64392219 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTGATAATTGAAATATAAAT+TGG + chr5_3:64392847-64392866 Msa0824820:intron 10.0%
!! ATATGTATATAATATAGTAT+TGG - chr5_3:64393097-64393116 None:intergenic 10.0%
!! CAAAAAAAAAAAAAAAAGAA+TGG + chr5_3:64394322-64394341 Msa0824820:intron 10.0%
!!! GAATCAATTTTTGTTAATTT+AGG + chr5_3:64391835-64391854 Msa0824820:intron 15.0%
!!! TTTTGATACGTTATTTTTAA+TGG - chr5_3:64392368-64392387 None:intergenic 15.0%
!! AGATAAACTTGTAATATATA+GGG + chr5_3:64393253-64393272 Msa0824820:CDS 15.0%
!! AAAAAAAAATTACTTGATGT+AGG - chr5_3:64393357-64393376 None:intergenic 15.0%
!! CTAATAAAGTTAGTTAAAAA+AGG - chr5_3:64393748-64393767 None:intergenic 15.0%
!! ACTAAAAAACAGAATTTAAT+TGG + chr5_3:64393785-64393804 Msa0824820:intron 15.0%
!!! TGATATTTTGTTATTGATAT+TGG + chr5_3:64394143-64394162 Msa0824820:intron 15.0%
!!! AGATTTTGGTTTAATTTTCT+GGG + chr5_3:64391720-64391739 Msa0824820:intron 20.0%
!!! CAATTTTTGTTAATTTAGGT+TGG + chr5_3:64391839-64391858 Msa0824820:intron 20.0%
!! GACACAATAAAATAACATTT+AGG - chr5_3:64392003-64392022 None:intergenic 20.0%
!!! TGTTTTCATTGTTTTGAAAT+AGG + chr5_3:64392058-64392077 Msa0824820:intron 20.0%
!!! TTATTTTCAATTCAGATTTC+AGG + chr5_3:64392465-64392484 Msa0824820:intron 20.0%
!! CATATATTAATCATGCTTTA+AGG + chr5_3:64393112-64393131 Msa0824820:intron 20.0%
!! CAGATAAACTTGTAATATAT+AGG + chr5_3:64393252-64393271 Msa0824820:CDS 20.0%
!! TCAAATAAGTCAATTCAAAT+AGG + chr5_3:64393712-64393731 Msa0824820:intron 20.0%
!! TAACTAACTTTATTAGCAAA+TGG + chr5_3:64393752-64393771 Msa0824820:intron 20.0%
!! AGAAACTGTATAATTATACT+TGG + chr5_3:64393976-64393995 Msa0824820:intron 20.0%
!! ACTTATATCATAATTAGCAT+TGG + chr5_3:64394242-64394261 Msa0824820:CDS 20.0%
!! TATGAAATCTTACAAAATTC+TGG - chr5_3:64394579-64394598 None:intergenic 20.0%
!! CATAATAAAGTAACATGATT+TGG - chr5_3:64394609-64394628 None:intergenic 20.0%
!!! TATGTTGTGTTTGTTTTTGA+TGG + chr5_3:64391691-64391710 Msa0824820:intron 25.0%
!!! GAGATTTTGGTTTAATTTTC+TGG + chr5_3:64391719-64391738 Msa0824820:intron 25.0%
!!! AATTTTCTGGGTTGTTATTT+TGG + chr5_3:64391732-64391751 Msa0824820:intron 25.0%
! TGTCTTGAATATCATTATTC+AGG + chr5_3:64391891-64391910 Msa0824820:intron 25.0%
! TTCAAAACAATGAAAACACT+TGG - chr5_3:64392056-64392075 None:intergenic 25.0%
! AGATCAGAAATATCAAACAT+AGG - chr5_3:64392302-64392321 None:intergenic 25.0%
!!! GTAGTTAGGATTGAATTTTT+TGG - chr5_3:64392739-64392758 None:intergenic 25.0%
! AAATTCAATCCTAACTACTT+TGG + chr5_3:64392741-64392760 Msa0824820:intron 25.0%
! AATTCAATCCTAACTACTTT+GGG + chr5_3:64392742-64392761 Msa0824820:intron 25.0%
!! TTCATAGTATCTGAACTTTT+AGG + chr5_3:64392914-64392933 Msa0824820:intron 25.0%
! ACTAGAATGAAAATTGCATT+AGG + chr5_3:64393197-64393216 Msa0824820:CDS 25.0%
! CAAAACTCCAAATATATTAC+TGG + chr5_3:64393280-64393299 Msa0824820:CDS 25.0%
!!! TTTTTTTCTTCCCTAAATTC+AGG + chr5_3:64393370-64393389 Msa0824820:intron 25.0%
! CATATATAATACTTTCCTGT+AGG - chr5_3:64393956-64393975 None:intergenic 25.0%
! ACTGTATAATTATACTTGGT+AGG + chr5_3:64393980-64393999 Msa0824820:intron 25.0%
! AATTATACTTGGTAGGAAAA+TGG + chr5_3:64393987-64394006 Msa0824820:intron 25.0%
! AAAATTTGGAGGAAAAGATA+TGG - chr5_3:64394183-64394202 None:intergenic 25.0%
!! TATATCATAATTAGCATTGG+CGG + chr5_3:64394245-64394264 Msa0824820:CDS 25.0%
! TTTCTGCTCAATTGAATAAT+AGG + chr5_3:64394357-64394376 Msa0824820:intron 25.0%
!! AAAAGACATTTCTGTTTTCT+TGG - chr5_3:64394556-64394575 None:intergenic 25.0%
! GTTCTTATTCTTAGAATCAT+AGG - chr5_3:64394652-64394671 None:intergenic 25.0%
! TGTTAATGTGCTGAAAAATA+TGG + chr5_3:64394675-64394694 Msa0824820:intron 25.0%
!! TTGTGCAATATTTTGTTAGA+AGG + chr5_3:64394902-64394921 Msa0824820:CDS 25.0%
CCAAGGTACATAAATAAAAG+AGG - chr5_3:64391647-64391666 None:intergenic 30.0%
!! CCTCTTTTATTTATGTACCT+TGG + chr5_3:64391644-64391663 Msa0824820:intron 30.0%
!!! TTTGATGGATTGAGAGATTT+TGG + chr5_3:64391706-64391725 Msa0824820:intron 30.0%
AACACTTGGAGTCAATTTAA+TGG - chr5_3:64392042-64392061 None:intergenic 30.0%
TAGGATTTGATGTCTAGATT+TGG + chr5_3:64392077-64392096 Msa0824820:intron 30.0%
GAAAAGGTAATATGATCTCA+AGG + chr5_3:64392247-64392266 Msa0824820:intron 30.0%
! CATAAGCTTGAGTGAAATTT+TGG - chr5_3:64392516-64392535 None:intergenic 30.0%
CAAAATTTCACTCAAGCTTA+TGG + chr5_3:64392514-64392533 Msa0824820:CDS 30.0%
AGGACTTAAAAAATCTCACA+AGG + chr5_3:64392594-64392613 Msa0824820:intron 30.0%
!! ATTTTCATTCTAGTTGACCA+TGG - chr5_3:64393191-64393210 None:intergenic 30.0%
TCCAAATATATTACTGGACT+CGG + chr5_3:64393286-64393305 Msa0824820:CDS 30.0%
GTTGTGTAATCCTGAATTTA+GGG - chr5_3:64393383-64393402 None:intergenic 30.0%
AGTTGTGTAATCCTGAATTT+AGG - chr5_3:64393384-64393403 None:intergenic 30.0%
ACAACTAAACTATCAAACCT+TGG + chr5_3:64393398-64393417 Msa0824820:CDS 30.0%
!! GTATTGGCATTTTACCATAA+AGG + chr5_3:64393519-64393538 Msa0824820:intron 30.0%
TTTACCATAAAGGTTCCATT+TGG + chr5_3:64393529-64393548 Msa0824820:intron 30.0%
TTATCCAAATGGAACCTTTA+TGG - chr5_3:64393536-64393555 None:intergenic 30.0%
! GCTTAAGTTGTTTATCCAAA+TGG - chr5_3:64393547-64393566 None:intergenic 30.0%
GTTATTTACATAAGCTATCC+TGG + chr5_3:64393640-64393659 Msa0824820:intron 30.0%
! ATTAACTGCCTTCAATTTTC+AGG + chr5_3:64393875-64393894 Msa0824820:intron 30.0%
AAAGATGACCTGAAAATTGA+AGG - chr5_3:64393886-64393905 None:intergenic 30.0%
CCAATAAGATCAAAATTTGG+AGG - chr5_3:64394194-64394213 None:intergenic 30.0%
!! CCTCCAAATTTTGATCTTAT+TGG + chr5_3:64394191-64394210 Msa0824820:CDS 30.0%
CTGCCAATAAGATCAAAATT+TGG - chr5_3:64394197-64394216 None:intergenic 30.0%
TGAACTTTAACAACCTCTTA+TGG + chr5_3:64394437-64394456 Msa0824820:intron 30.0%
TTGTAATAATGAGCCATAAG+AGG - chr5_3:64394453-64394472 None:intergenic 30.0%
TAATAGTCAAACACCATCTT+TGG - chr5_3:64394503-64394522 None:intergenic 30.0%
! ATAGGTTGACAAAACATCAA+AGG - chr5_3:64394634-64394653 None:intergenic 30.0%
ATATGGTTGACAAACATTAC+AGG + chr5_3:64394692-64394711 Msa0824820:intron 30.0%
TTGACAAACATTACAGGTTT+AGG + chr5_3:64394698-64394717 Msa0824820:intron 30.0%
! ATGATGATGATGAACAGAAC+AGG - chr5_3:64391556-64391575 None:intergenic 35.0%
AACAAACACTGAATCAACCA+AGG - chr5_3:64391664-64391683 None:intergenic 35.0%
! TGGTTGATTCAGTGTTTGTT+TGG + chr5_3:64391664-64391683 Msa0824820:intron 35.0%
CTTATCAGAACCTGTTGATA+AGG + chr5_3:64391924-64391943 Msa0824820:CDS 35.0%
!! TTAACTGTTGCAGAGTGTTT+TGG + chr5_3:64391955-64391974 Msa0824820:CDS 35.0%
!! TAACTGTTGCAGAGTGTTTT+GGG + chr5_3:64391956-64391975 Msa0824820:CDS 35.0%
CATGGAAATACAAAGAAGAC+TGG + chr5_3:64392137-64392156 Msa0824820:CDS 35.0%
ATCAGGCTAATCAAACAAGA+AGG + chr5_3:64392171-64392190 Msa0824820:CDS 35.0%
GAGTCAAGTTAAGAAGATTC+AGG + chr5_3:64392574-64392593 Msa0824820:intron 35.0%
AGTGAAACAATAGGTATGCT+GGG - chr5_3:64392706-64392725 None:intergenic 35.0%
CATACCTATTGTTTCACTGT+TGG + chr5_3:64392708-64392727 Msa0824820:intron 35.0%
AGTTCCAACAGTGAAACAAT+AGG - chr5_3:64392715-64392734 None:intergenic 35.0%
AAGTCTTCAAAGTCTACTGT+TGG + chr5_3:64392794-64392813 Msa0824820:intron 35.0%
GGAAGTTATAAATGCTCATG+TGG + chr5_3:64392815-64392834 Msa0824820:intron 35.0%
!!! CTTTTAGGATTGCTTCAATG+AGG + chr5_3:64392929-64392948 Msa0824820:intron 35.0%
GTTCTTCATTGTTGCCTAAT+TGG + chr5_3:64392966-64392985 Msa0824820:intron 35.0%
! TGTAAGAGTACATGACAAGA+GGG + chr5_3:64393021-64393040 Msa0824820:intron 35.0%
! TTCTTTGTTGTGATTCAAGC+AGG + chr5_3:64393149-64393168 Msa0824820:intron 35.0%
CAAGTTTATCTGCTTCATGA+AGG - chr5_3:64393244-64393263 None:intergenic 35.0%
ACCGAGTCCAGTAATATATT+TGG - chr5_3:64393290-64393309 None:intergenic 35.0%
TGTGACAACAACATGCATAA+TGG + chr5_3:64393457-64393476 Msa0824820:intron 35.0%
GTGACAACAACATGCATAAT+GGG + chr5_3:64393458-64393477 Msa0824820:intron 35.0%
! ACATGCATAATGGGAACAAA+AGG + chr5_3:64393467-64393486 Msa0824820:intron 35.0%
ATACCTATACACATCACTCT+TGG - chr5_3:64393912-64393931 None:intergenic 35.0%
AAGAGTGATGTGTATAGGTA+TGG + chr5_3:64393911-64393930 Msa0824820:intron 35.0%
!! AAATGCTGCGATTTTAGAGA+TGG + chr5_3:64394041-64394060 Msa0824820:intron 35.0%
TGACATTTCAGCTATTCACA+TGG - chr5_3:64394069-64394088 None:intergenic 35.0%
TAGGTATGTTAGCATAGGTT+CGG + chr5_3:64394295-64394314 Msa0824820:intron 35.0%
AAAGCAGAAATTGCCAAAGA+TGG + chr5_3:64394487-64394506 Msa0824820:intron 35.0%
GTGTTTGACTATTATGCATC+TGG + chr5_3:64394509-64394528 Msa0824820:intron 35.0%
TTGCTCACATCGATAAGAAT+TGG - chr5_3:64394727-64394746 None:intergenic 35.0%
AACCTGAGAAATAGAGCAAC+CGG - chr5_3:64391528-64391547 None:intergenic 40.0%
! GTTGCTCTATTTCTCAGGTT+CGG + chr5_3:64391528-64391547 Msa0824820:intron 40.0%
! CTCTCTCTTTTGTTCATCTG+AGG + chr5_3:64391784-64391803 Msa0824820:intron 40.0%
! GAACCTGTTGATAAGGCAAA+AGG + chr5_3:64391931-64391950 Msa0824820:CDS 40.0%
! AAGCCTTTTGCCTTATCAAC+AGG - chr5_3:64391937-64391956 None:intergenic 40.0%
!!! AGAGTGTTTTGGGATTTCAC+AGG + chr5_3:64391966-64391985 Msa0824820:CDS 40.0%
AAGAAGGAAAAGAAGCCATG+AGG + chr5_3:64392187-64392206 Msa0824820:CDS 40.0%
AGAAGGAAAAGAAGCCATGA+GGG + chr5_3:64392188-64392207 Msa0824820:CDS 40.0%
! CTCTGTTCTGCTGTTTGAAA+AGG + chr5_3:64392231-64392250 Msa0824820:CDS 40.0%
ATAGGTATGCTGGGACAATT+TGG - chr5_3:64392697-64392716 None:intergenic 40.0%
CAGTGAAACAATAGGTATGC+TGG - chr5_3:64392707-64392726 None:intergenic 40.0%
TCAATCCTAACTACTTTGGG+TGG + chr5_3:64392745-64392764 Msa0824820:intron 40.0%
TAGTACCACCCAAAGTAGTT+AGG - chr5_3:64392753-64392772 None:intergenic 40.0%
! TCTGATTTTCTCAGCTGCTT+TGG + chr5_3:64392887-64392906 Msa0824820:intron 40.0%
CCTCACAACAGTATCCAATT+AGG - chr5_3:64392983-64393002 None:intergenic 40.0%
CCTAATTGGATACTGTTGTG+AGG + chr5_3:64392980-64392999 Msa0824820:intron 40.0%
! GTGTAAGAGTACATGACAAG+AGG + chr5_3:64393020-64393039 Msa0824820:intron 40.0%
! GTAAGAGTACATGACAAGAG+GGG + chr5_3:64393022-64393041 Msa0824820:intron 40.0%
! TAAGAGTACATGACAAGAGG+GGG + chr5_3:64393023-64393042 Msa0824820:intron 40.0%
AATTGCATTAGGTGCAGCTA+AGG + chr5_3:64393208-64393227 Msa0824820:CDS 40.0%
ATTGCATTAGGTGCAGCTAA+GGG + chr5_3:64393209-64393228 Msa0824820:CDS 40.0%
!! AACCTTGGATTAGCTGAAGA+TGG + chr5_3:64393413-64393432 Msa0824820:CDS 40.0%
ACATGTGTTTCTTCTCCTTC+AGG - chr5_3:64393440-64393459 None:intergenic 40.0%
ATACCTGCCATGATATACTC+AGG - chr5_3:64393503-64393522 None:intergenic 40.0%
GAGTATATCATGGCAGGTAT+TGG + chr5_3:64393503-64393522 Msa0824820:intron 40.0%
CTACCAAGAGTGATGTGTAT+AGG + chr5_3:64393906-64393925 Msa0824820:CDS 40.0%
TAGGTATGGAGTAGTGTTGT+TGG + chr5_3:64393925-64393944 Msa0824820:intron 40.0%
GCTGATAGGTATGTTAGCAT+AGG + chr5_3:64394290-64394309 Msa0824820:intron 40.0%
! TGTTTTCTTGGAGAGACCAT+TGG - chr5_3:64394544-64394563 None:intergenic 40.0%
CTCACATCGATAAGAATTGG+TGG - chr5_3:64394724-64394743 None:intergenic 40.0%
!!! GCATGGAAATTTTGAAGCCA+AGG - chr5_3:64394771-64394790 None:intergenic 40.0%
TCCAACTGCTATGCAGAAAA+TGG + chr5_3:64394804-64394823 Msa0824820:CDS 40.0%
TATGCAGAAAATGGCTCATC+CGG + chr5_3:64394813-64394832 Msa0824820:CDS 40.0%
GAAAAAGCAATGATACCCTC+CGG - chr5_3:64394835-64394854 None:intergenic 40.0%
ACTGAGTCTGTGTCTGATCA+TGG + chr5_3:64392119-64392138 Msa0824820:CDS 45.0%
AACAGAGTCATACCAGTGGT+TGG - chr5_3:64392218-64392237 None:intergenic 45.0%
GGTACTATGAGAGCTGTACT+AGG + chr5_3:64392766-64392785 Msa0824820:intron 45.0%
GATCCTCTGCTACATTACCA+TGG + chr5_3:64393171-64393190 Msa0824820:CDS 45.0%
! TGACCATGGTAATGTAGCAG+AGG - chr5_3:64393177-64393196 None:intergenic 45.0%
GACCATCTTCAGCTAATCCA+AGG - chr5_3:64393418-64393437 None:intergenic 45.0%
TTAGCTGAAGATGGTCCTGA+AGG + chr5_3:64393422-64393441 Msa0824820:CDS 45.0%
TGCTGCTCCTGAGTATATCA+TGG + chr5_3:64393493-64393512 Msa0824820:intron 45.0%
GACATCTCTATAAGCTAGCC+AGG - chr5_3:64393661-64393680 None:intergenic 45.0%
! GTGTTGTTGGAATTGCCTAC+AGG + chr5_3:64393938-64393957 Msa0824820:intron 45.0%
TTTGATCTTATTGGCAGCGC+TGG + chr5_3:64394200-64394219 Msa0824820:CDS 45.0%
!! TCCTCAGTTGTAGTGCTGAT+AGG + chr5_3:64394276-64394295 Msa0824820:CDS 45.0%
ACCTATCAGCACTACAACTG+AGG - chr5_3:64394280-64394299 None:intergenic 45.0%
! CTATTATGCATCTGGTGCTG+AGG + chr5_3:64394517-64394536 Msa0824820:intron 45.0%
GACATGTCAACTACTGTCCT+TGG + chr5_3:64394751-64394770 Msa0824820:CDS 45.0%
!! GCCATTTTCTGCATAGCAGT+TGG - chr5_3:64394808-64394827 None:intergenic 45.0%
! CTCCGGTTGCTCTATTTCTC+AGG + chr5_3:64391523-64391542 Msa0824820:CDS 50.0%
!! GACTGGTGCTGCTTATGATC+AGG + chr5_3:64392154-64392173 Msa0824820:CDS 50.0%
GCAGAACAGAGTCATACCAG+TGG - chr5_3:64392222-64392241 None:intergenic 50.0%
ACTGTTGTGAGGAGTAGCAG+AGG + chr5_3:64392991-64393010 Msa0824820:intron 50.0%
! TGAGGAGTAGCAGAGGCTTT+TGG + chr5_3:64392998-64393017 Msa0824820:intron 50.0%
GCTCCTGAGTATATCATGGC+AGG + chr5_3:64393497-64393516 Msa0824820:intron 50.0%
!! TGGCAGCGCTGGTAATCATT+CGG + chr5_3:64394211-64394230 Msa0824820:CDS 50.0%
TGGAGCAATCATGACTGGCA+TGG - chr5_3:64394788-64394807 None:intergenic 50.0%
GCAGTTGGAGCAATCATGAC+TGG - chr5_3:64394793-64394812 None:intergenic 50.0%
CAGAAAATGGCTCATCCGGA+GGG + chr5_3:64394817-64394836 Msa0824820:CDS 50.0%
! CAGTGGTTGGTGTTCCCTCA+TGG - chr5_3:64392205-64392224 None:intergenic 55.0%
CATGAGGGAACACCAACCAC+TGG + chr5_3:64392203-64392222 Msa0824820:CDS 55.0%
GTACATGACAAGAGGGGGCT+TGG + chr5_3:64393028-64393047 Msa0824820:intron 55.0%
! CATCTGGTGCTGAGGACCAA+TGG + chr5_3:64394525-64394544 Msa0824820:intron 55.0%
GCAGAAAATGGCTCATCCGG+AGG + chr5_3:64394816-64394835 Msa0824820:CDS 55.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 64391509 64394951 64391509 ID=Msa0824820;Name=Msa0824820
chr5_3 mRNA 64391509 64394951 64391509 ID=Msa0824820-mRNA-1;Parent=Msa0824820;Name=Msa0824820-mRNA-1;_AED=0.31;_eAED=0.31;_QI=0|0.5|0.44|1|1|0.88|9|0|327
chr5_3 exon 64391509 64391544 64391509 ID=Msa0824820-mRNA-1:exon:20086;Parent=Msa0824820-mRNA-1
chr5_3 exon 64391913 64391987 64391913 ID=Msa0824820-mRNA-1:exon:20087;Parent=Msa0824820-mRNA-1
chr5_3 exon 64392080 64392252 64392080 ID=Msa0824820-mRNA-1:exon:20088;Parent=Msa0824820-mRNA-1
chr5_3 exon 64392480 64392580 64392480 ID=Msa0824820-mRNA-1:exon:20089;Parent=Msa0824820-mRNA-1
chr5_3 exon 64393171 64393307 64393171 ID=Msa0824820-mRNA-1:exon:20090;Parent=Msa0824820-mRNA-1
chr5_3 exon 64393392 64393457 64393392 ID=Msa0824820-mRNA-1:exon:20091;Parent=Msa0824820-mRNA-1
chr5_3 exon 64393897 64393927 64393897 ID=Msa0824820-mRNA-1:exon:20092;Parent=Msa0824820-mRNA-1
chr5_3 exon 64394171 64394297 64394171 ID=Msa0824820-mRNA-1:exon:20093;Parent=Msa0824820-mRNA-1
chr5_3 exon 64394714 64394951 64394714 ID=Msa0824820-mRNA-1:exon:20094;Parent=Msa0824820-mRNA-1
chr5_3 CDS 64391509 64391544 64391509 ID=Msa0824820-mRNA-1:cds;Parent=Msa0824820-mRNA-1
chr5_3 CDS 64391913 64391987 64391913 ID=Msa0824820-mRNA-1:cds;Parent=Msa0824820-mRNA-1
chr5_3 CDS 64392080 64392252 64392080 ID=Msa0824820-mRNA-1:cds;Parent=Msa0824820-mRNA-1
chr5_3 CDS 64392480 64392580 64392480 ID=Msa0824820-mRNA-1:cds;Parent=Msa0824820-mRNA-1
chr5_3 CDS 64393171 64393307 64393171 ID=Msa0824820-mRNA-1:cds;Parent=Msa0824820-mRNA-1
chr5_3 CDS 64393392 64393457 64393392 ID=Msa0824820-mRNA-1:cds;Parent=Msa0824820-mRNA-1
chr5_3 CDS 64393897 64393927 64393897 ID=Msa0824820-mRNA-1:cds;Parent=Msa0824820-mRNA-1
chr5_3 CDS 64394171 64394297 64394171 ID=Msa0824820-mRNA-1:cds;Parent=Msa0824820-mRNA-1
chr5_3 CDS 64394714 64394951 64394714 ID=Msa0824820-mRNA-1:cds;Parent=Msa0824820-mRNA-1
Gene Sequence

>Msa0824820

TTTCTCGTCTTTCTCTCCGGTTGCTCTATTTCTCAGGATGTTATCTGCTTATCAGAACCTGTTGATAAGGCAAAAGGCTTAACTGTTGCAGAGTGTTTTGGGATTTCACAGGATTTGATGTCTAGATTTGGTACTGCTGCTGCACAGACTACTGAGTCTGTGTCTGATCATGGAAATACAAAGAAGACTGGTGCTGCTTATGATCAGGCTAATCAAACAAGAAGGAAAAGAAGCCATGAGGGAACACCAACCACTGGTATGACTCTGTTCTGCTGTTTGAAAAGATTTCAGGTCATTAACAACTCACAATCAGCAAGCCAAAATTTCACTCAAGCTTATGGTTCTTTTCAAGTTTCACAAAATGATGTCTTCTCTAATGAGTCAAGATCCTCTGCTACATTACCATGGTCAACTAGAATGAAAATTGCATTAGGTGCAGCTAAGGGACTAGCTTTCCTTCATGAAGCAGATAAACTTGTAATATATAGGGATTTCAAAACTCCAAATATATTACTGGACTCGGATTACACAACTAAACTATCAAACCTTGGATTAGCTGAAGATGGTCCTGAAGGAGAAGAAACACATGTCATCTTTCTACCAAGAGTGATGTGTATAGAGTTACAAACCATATCTTTTCCTCCAAATTTTGATCTTATTGGCAGCGCTGGTAATCATTCGGCTGCAGTGACTTATATCATAATTAGCATTGGCGGTTGCATGATCCTCAGTTGTAGTGCTGATAGGTTTAGGCCACCAATTCTTATCGATGTGAGCAAGATAGACATGTCAACTACTGTCCTTGGCTTCAAAATTTCCATGCCAGTCATGATTGCTCCAACTGCTATGCAGAAAATGGCTCATCCGGAGGGTATCATTGCTTTTTCTTTAAATTCACTTGAATTTCTGAAATGCAAAATTAAGTTGTTTTGTTTTGTGCAATATTTTGTTAGAAGGAAAAAGTTCATGAAAAATCAAGCATGA
Protein sequence

>Msa0824820

FLVFLSGCSISQDVICLSEPVDKAKGLTVAECFGISQDLMSRFGTAAAQTTESVSDHGNTKKTGAAYDQANQTRRKRSHEGTPTTGMTLFCCLKRFQVINNSQSASQNFTQAYGSFQVSQNDVFSNESRSSATLPWSTRMKIALGAAKGLAFLHEADKLVIYRDFKTPNILLDSDYTTKLSNLGLAEDGPEGEETHVIFLPRVMCIELQTISFPPNFDLIGSAGNHSAAVTYIIISIGGCMILSCSADRFRPPILIDVSKIDMSTTVLGFKISMPVMIAPTAMQKMAHPEGIIAFSLNSLEFLKCKIKLFCFVQYFVRRKKFMKNQA*