AlfalfaGEDB | Msa0331080

M. sativa cultivar zhongmu-4 / Msa0331080

KEGG: -
GO: GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0331080	XP_003603231.1	69.106	123	10	1	1	95	165	287	4.16e-41	156

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0331080	sp\|Q9ZUF4\|RIPK_ARATH	59.504	121	22	1	1	94	170	290	6.59e-35	134

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0331080	Msa0331090	0.926133	7.124831e-91	-8.615850e-47
Msa0331080	Msa0746260	0.842371	2.693005e-58	-8.615850e-47
Msa0331080	Msa0824820	0.899261	2.360805e-77	-8.615850e-47
Msa0331080	Msa1301450	0.965085	3.771392e-124	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0331080	MtrunA17_Chr3g0136421	69.106	123	10	1	1	95	165	287	3.83e-45	156
Msa0331080	MtrunA17_Chr1g0150741	66.116	121	14	1	1	94	165	285	2.34e-42	149
Msa0331080	MtrunA17_Chr2g0300711	59.504	121	22	1	1	94	162	282	1.54e-36	136
Msa0331080	MtrunA17_Chr4g0070411	57.851	121	24	1	1	94	168	288	9.92e-35	131
Msa0331080	MtrunA17_Chr5g0408941	56.198	121	25	2	1	94	175	294	6.17e-33	125
Msa0331080	MtrunA17_Chr7g0245571	55.372	121	27	1	1	94	174	294	1.23e-32	124
Msa0331080	MtrunA17_Chr5g0416011	57.377	122	23	3	1	94	222	342	1.68e-32	124
Msa0331080	MtrunA17_Chr7g0216551	54.918	122	27	2	1	94	209	330	3.07e-32	124
Msa0331080	MtrunA17_Chr6g0453001	54.918	122	27	2	1	94	140	261	6.09e-32	122
Msa0331080	MtrunA17_Chr8g0362661	56.557	122	24	3	1	94	220	340	8.06e-32	122

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0331080	AT2G05940.1	59.504	121	22	1	1	94	170	290	6.70e-36	134
Msa0331080	AT2G26290.1	58.678	121	23	1	1	94	171	291	9.17e-36	133
Msa0331080	AT1G61590.1	56.198	121	26	1	1	94	182	302	1.34e-33	127
Msa0331080	AT5G35580.1	56.198	121	26	1	1	94	159	279	2.62e-33	127
Msa0331080	AT5G35580.2	56.198	121	26	1	1	94	171	291	2.95e-33	127
Msa0331080	AT3G28690.1	58.197	122	22	3	1	94	112	232	5.27e-33	124
Msa0331080	AT3G28690.3	58.197	122	22	3	1	94	161	281	8.08e-33	125
Msa0331080	AT5G01020.1	55.372	121	27	1	1	94	152	272	1.28e-32	124
Msa0331080	AT3G28690.2	58.197	122	22	3	1	94	212	332	1.44e-32	125
Msa0331080	AT5G15080.1	58.197	122	22	3	1	94	228	348	1.13e-31	122

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Find 85 sgRNAs with CRISPR-Local

Find 269 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACAGAGTCATACCAGTGGT+TGG	0.615367	2_4:-46461999	None:intergenic
AACCTGAGAAATAGAGCAAC+CGG	0.455042	2_4:-46461309	None:intergenic
AACCTTGGATTAGCTGAAGA+TGG	0.530476	2_4:+46463225	Msa0331080:CDS
AAGAAGGAAAAGAAGCCATG+AGG	0.668105	2_4:+46461971	Msa0331080:five_prime_UTR
AAGAGTGATGTGTATAGGTA+TGG	0.508900	2_4:+46463723	Msa0331080:CDS
AAGCTTCCTTTCATAATGGA+AGG	0.546475	2_4:+46465897	Msa0331080:CDS
AAGGATTTGATGTCTAGATT+TGG	0.358983	2_4:+46461861	Msa0331080:intron
AATGGACCTTCCATTATGAA+AGG	0.578687	2_4:-46465903	None:intergenic
AATGTGCACCACAATCTGCA+GGG	0.681242	2_4:+46465403	Msa0331080:CDS
AATTGCATTAGGTGCAGCTA+AGG	0.490148	2_4:+46463020	Msa0331080:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CCAAGGTACATAAATAAAAG+AGG	-	chr2_4:46461431-46461450	None:intergenic	30.0%
AACACTTGGAGTCAATTTAA+TGG	-	chr2_4:46461826-46461845	None:intergenic	30.0%
AAGGATTTGATGTCTAGATT+TGG	+	chr2_4:46461861-46461880	Msa0331080:intron	30.0%
GAAAAGGTAATATGATCTCA+AGG	+	chr2_4:46462031-46462050	Msa0331080:intron	30.0%
CAAAATTTCACTCAAGCTTA+TGG	+	chr2_4:46462298-46462317	Msa0331080:five_prime_UTR	30.0%
AGGACTTAAAAAATCTCACA+AGG	+	chr2_4:46462406-46462425	Msa0331080:five_prime_UTR	30.0%
TCCAAATATATTACTGGACT+CGG	+	chr2_4:46463098-46463117	Msa0331080:CDS	30.0%
GTTGTGTAATCCTGAATTTA+GGG	-	chr2_4:46463195-46463214	None:intergenic	30.0%
AGTTGTGTAATCCTGAATTT+AGG	-	chr2_4:46463196-46463215	None:intergenic	30.0%
ACAACTAAACTATCAAACCT+TGG	+	chr2_4:46463210-46463229	Msa0331080:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_4	gene	46461293	46466590	46461293	ID=Msa0331080;Name=Msa0331080
chr2_4	mRNA	46461293	46466590	46461293	ID=Msa0331080-mRNA-1;Parent=Msa0331080;Name=Msa0331080-mRNA-1;_AED=0.30;_eAED=0.30;_QI=516\|0.57\|0.6\|1\|0.57\|0.6\|15\|151\|282
chr2_4	exon	46461293	46461328	46461293	ID=Msa0331080-mRNA-1:exon:14028;Parent=Msa0331080-mRNA-1
chr2_4	exon	46461697	46461771	46461697	ID=Msa0331080-mRNA-1:exon:14029;Parent=Msa0331080-mRNA-1
chr2_4	exon	46461864	46462036	46461864	ID=Msa0331080-mRNA-1:exon:14030;Parent=Msa0331080-mRNA-1
chr2_4	exon	46462264	46462360	46462264	ID=Msa0331080-mRNA-1:exon:14031;Parent=Msa0331080-mRNA-1
chr2_4	exon	46462389	46462427	46462389	ID=Msa0331080-mRNA-1:exon:14032;Parent=Msa0331080-mRNA-1
chr2_4	exon	46462748	46462880	46462748	ID=Msa0331080-mRNA-1:exon:14033;Parent=Msa0331080-mRNA-1
chr2_4	exon	46462983	46463119	46462983	ID=Msa0331080-mRNA-1:exon:14034;Parent=Msa0331080-mRNA-1
chr2_4	exon	46463204	46463246	46463204	ID=Msa0331080-mRNA-1:exon:14035;Parent=Msa0331080-mRNA-1
chr2_4	exon	46463709	46463775	46463709	ID=Msa0331080-mRNA-1:exon:14036;Parent=Msa0331080-mRNA-1
chr2_4	exon	46464029	46464109	46464029	ID=Msa0331080-mRNA-1:exon:14037;Parent=Msa0331080-mRNA-1
chr2_4	exon	46464525	46464740	46464525	ID=Msa0331080-mRNA-1:exon:14038;Parent=Msa0331080-mRNA-1
chr2_4	exon	46465231	46465300	46465231	ID=Msa0331080-mRNA-1:exon:14039;Parent=Msa0331080-mRNA-1
chr2_4	exon	46465385	46465439	46465385	ID=Msa0331080-mRNA-1:exon:14040;Parent=Msa0331080-mRNA-1
chr2_4	exon	46465882	46465973	46465882	ID=Msa0331080-mRNA-1:exon:14041;Parent=Msa0331080-mRNA-1
chr2_4	exon	46466389	46466590	46466389	ID=Msa0331080-mRNA-1:exon:14042;Parent=Msa0331080-mRNA-1
chr2_4	five_prime_UTR	46461293	46461328	46461293	ID=Msa0331080-mRNA-1:five_prime_utr;Parent=Msa0331080-mRNA-1
chr2_4	five_prime_UTR	46461697	46461771	46461697	ID=Msa0331080-mRNA-1:five_prime_utr;Parent=Msa0331080-mRNA-1
chr2_4	five_prime_UTR	46461864	46462036	46461864	ID=Msa0331080-mRNA-1:five_prime_utr;Parent=Msa0331080-mRNA-1
chr2_4	five_prime_UTR	46462264	46462360	46462264	ID=Msa0331080-mRNA-1:five_prime_utr;Parent=Msa0331080-mRNA-1
chr2_4	five_prime_UTR	46462389	46462427	46462389	ID=Msa0331080-mRNA-1:five_prime_utr;Parent=Msa0331080-mRNA-1
chr2_4	five_prime_UTR	46462748	46462843	46462748	ID=Msa0331080-mRNA-1:five_prime_utr;Parent=Msa0331080-mRNA-1
chr2_4	CDS	46462844	46462880	46462844	ID=Msa0331080-mRNA-1:cds;Parent=Msa0331080-mRNA-1
chr2_4	CDS	46462983	46463119	46462983	ID=Msa0331080-mRNA-1:cds;Parent=Msa0331080-mRNA-1
chr2_4	CDS	46463204	46463246	46463204	ID=Msa0331080-mRNA-1:cds;Parent=Msa0331080-mRNA-1
chr2_4	CDS	46463709	46463775	46463709	ID=Msa0331080-mRNA-1:cds;Parent=Msa0331080-mRNA-1
chr2_4	CDS	46464029	46464109	46464029	ID=Msa0331080-mRNA-1:cds;Parent=Msa0331080-mRNA-1
chr2_4	CDS	46464525	46464740	46464525	ID=Msa0331080-mRNA-1:cds;Parent=Msa0331080-mRNA-1
chr2_4	CDS	46465231	46465300	46465231	ID=Msa0331080-mRNA-1:cds;Parent=Msa0331080-mRNA-1
chr2_4	CDS	46465385	46465439	46465385	ID=Msa0331080-mRNA-1:cds;Parent=Msa0331080-mRNA-1
chr2_4	CDS	46465882	46465973	46465882	ID=Msa0331080-mRNA-1:cds;Parent=Msa0331080-mRNA-1
chr2_4	CDS	46466389	46466439	46466389	ID=Msa0331080-mRNA-1:cds;Parent=Msa0331080-mRNA-1
chr2_4	three_prime_UTR	46466440	46466590	46466440	ID=Msa0331080-mRNA-1:three_prime_utr;Parent=Msa0331080-mRNA-1

Gene Sequence

>Msa0331080

ATGACAAGAGGGGGCTTGGAGAATCAATTGTTCAGAAGATCCTCTGCTACATTACCATGGTCAACTAGAATGAAAATTGCATTAGGTGCAGCTAAGGGACTAGCTTTCCTTCATGAAGCAGATAAACTTGTAATATATAGGGATTTCAAAACTCCAAATATATTACTGGACTCGGATTACACAACTAAACTATCAAACCTTGGATTAGCTGAAGATGGTCATCTTTCTACCAAGAGTGATGTGTATAGGTATGGAGTAGTGTTGTTGGAATTGCCTACAGGAAACGCTGGTAATCATTCGGCTGCAGTGACTTATATCATAATTAGCATTGGCGGTTGCATGATCCTCAGTTGTAGTGCTGATAGGTTTAGGCCACCAATTCTTATCGATGTGAGCAAGATAGACATGTCAACTACTGTCCTTGGCTTCAAAATTTCCATGCCAGTCATGATTGCTCCAACTGCTATGCAGAAAATGGCTCATCCGGAGGGTATCATTGCTTTTTCTTTAAATTCACTTGAATTTCTGAAATGCAAAATTAAGTTGTTTTGTTTTGTGCAATATTTTGTTGGAAGGAAAAAACAGCCTGGTTTTAAGCAAATGAAGATTATAAGGCAGGAGAGGCATACAGTTTGCCTCATTGAGTTTGAAGATGTGAATAGTGCTACGAATGTGCACCACAATCTGCAGGGTGCTGTTATCCCAAGGTTGCAACATGACAAAGCTTCCTTTCATAATGGAAGGTCCATTTCTGCTACTGCCATATTGTTGCAGGTGATTTTTGTTGGCACGGGTAAGGATCCTTACTCACTTGATATAGGAAGATTTTTCACAGGATATGGAATTTGA

Protein sequence

>Msa0331080

MTRGGLENQLFRRSSATLPWSTRMKIALGAAKGLAFLHEADKLVIYRDFKTPNILLDSDYTTKLSNLGLAEDGHLSTKSDVYRYGVVLLELPTGNAGNHSAAVTYIIISIGGCMILSCSADRFRPPILIDVSKIDMSTTVLGFKISMPVMIAPTAMQKMAHPEGIIAFSLNSLEFLKCKIKLFCFVQYFVGRKKQPGFKQMKIIRQERHTVCLIEFEDVNSATNVHHNLQGAVIPRLQHDKASFHNGRSISATAILLQVIFVGTGKDPYSLDIGRFFTGYGI*