Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0826920 | RHN57948.1 | 65.468 | 278 | 38 | 7 | 1 | 221 | 1 | 277 | 6.21e-97 | 299 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0826920 | A0A396HZM9 | 65.468 | 278 | 38 | 7 | 1 | 221 | 1 | 277 | 2.97e-97 | 299 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0743760 | Msa0826920 | 0.848077 | 7.712269e-60 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0826920 | MtrunA17_Chr5g0445861 | 65.468 | 278 | 38 | 7 | 1 | 221 | 1 | 277 | 5.71e-101 | 299 |
| Msa0826920 | MtrunA17_Chr5g0445961 | 38.679 | 318 | 82 | 9 | 1 | 210 | 1 | 313 | 2.51e-37 | 136 |
| Msa0826920 | MtrunA17_Chr5g0445771 | 45.763 | 236 | 87 | 7 | 3 | 215 | 1 | 218 | 6.81e-37 | 134 |
| Msa0826920 | MtrunA17_Chr5g0445811 | 41.176 | 221 | 66 | 7 | 1 | 213 | 1 | 165 | 1.64e-27 | 105 |
| Msa0826920 | MtrunA17_Chr5g0445831 | 37.175 | 269 | 95 | 9 | 1 | 216 | 1 | 248 | 1.04e-25 | 103 |
| Msa0826920 | MtrunA17_Chr5g0445881 | 36.250 | 240 | 86 | 7 | 1 | 216 | 1 | 197 | 2.60e-20 | 88.6 |
| Msa0826920 | MtrunA17_Chr5g0434161 | 62.319 | 69 | 26 | 0 | 148 | 216 | 18 | 86 | 4.67e-18 | 76.3 |
| Msa0826920 | MtrunA17_Chr5g0446181 | 40.136 | 147 | 67 | 3 | 1 | 126 | 1 | 147 | 7.89e-16 | 75.5 |
| Msa0826920 | MtrunA17_Chr5g0446231 | 49.107 | 112 | 39 | 5 | 25 | 132 | 19 | 116 | 3.13e-15 | 73.9 |
| Msa0826920 | MtrunA17_Chr5g0446191 | 47.321 | 112 | 41 | 5 | 25 | 132 | 34 | 131 | 1.36e-13 | 69.3 |
| Msa0826920 | MtrunA17_Chr5g0446171 | 40.000 | 150 | 60 | 6 | 1 | 132 | 1 | 138 | 1.98e-13 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 30 sgRNAs with CRISPR-Local
Find 162 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGATGAACCAAGTTCGATTT+TGG | 0.156231 | 5_3:-67774961 | None:intergenic |
| TGACAGAGTTGAAGGTATTT+TGG | 0.240826 | 5_3:+67775097 | Msa0826920:CDS |
| GATGATAGTAATGCTCTTAA+TGG | 0.300446 | 5_3:+67775739 | Msa0826920:CDS |
| TGAATTAGACAATGAAGTTT+TGG | 0.307370 | 5_3:+67775519 | Msa0826920:CDS |
| TGAGCTAGAATCTAAAGTTT+TGG | 0.370227 | 5_3:+67775687 | Msa0826920:CDS |
| GAGAGGAAATTTGTCGGAAA+GGG | 0.407724 | 5_3:+67775252 | Msa0826920:CDS |
| GCTTCAAGAGGAGCTTGAAA+TGG | 0.443989 | 5_3:+67775187 | Msa0826920:CDS |
| TTTGGAGTTGGAGAAGTTGA+AGG | 0.446585 | 5_3:+67775705 | Msa0826920:CDS |
| TCTGCTGCAAGTGTTGAATC+TGG | 0.461430 | 5_3:-67775142 | None:intergenic |
| TGAGCTGAGGGAATTGTTTG+AGG | 0.463166 | 5_3:+67775371 | Msa0826920:CDS |
| ATTCCAGTCAAAGCACGTAT+TGG | 0.463242 | 5_3:+67776066 | Msa0826920:intron |
| AAAGAGGAATATTGAGCTGA+GGG | 0.483756 | 5_3:+67775359 | Msa0826920:CDS |
| GTGTTGTTCTTCTAAGAAAG+AGG | 0.494761 | 5_3:+67775343 | Msa0826920:CDS |
| ATTCAACCCAAAATCGAACT+TGG | 0.494899 | 5_3:+67774954 | Msa0826920:CDS |
| CTGAGGGAATTGTTTGAGGA+AGG | 0.504261 | 5_3:+67775375 | Msa0826920:CDS |
| TGGAGAAGTTGAAGGAAAAG+TGG | 0.505770 | 5_3:+67775713 | Msa0826920:CDS |
| AGAAAAGAGAGGAAATTTGT+CGG | 0.506834 | 5_3:+67775246 | Msa0826920:CDS |
| CAACACTTGCAGCAGAATGT+TGG | 0.515936 | 5_3:+67775149 | Msa0826920:CDS |
| TACAAAGAAGAATAATGAGT+TGG | 0.524986 | 5_3:+67775419 | Msa0826920:CDS |
| AGAGAGGAAATTTGTCGGAA+AGG | 0.525098 | 5_3:+67775251 | Msa0826920:CDS |
| CCAGTCAAAGCACGTATTGG+AGG | 0.537605 | 5_3:+67776069 | Msa0826920:intron |
| GAATAATGAGTTGGAGTGCG+AGG | 0.543935 | 5_3:+67775428 | Msa0826920:CDS |
| TTCAACTAGAATCAAGTGGT+TGG | 0.557136 | 5_3:-67774991 | None:intergenic |
| GAGTGGTGAGTTGGAGTGTG+AGG | 0.568828 | 5_3:+67775597 | Msa0826920:CDS |
| CTTGCAGCAGAATGTTGGAA+TGG | 0.586906 | 5_3:+67775154 | Msa0826920:CDS |
| CACTTTCAACTAGAATCAAG+TGG | 0.592234 | 5_3:-67774995 | None:intergenic |
| GAAAGAGGAATATTGAGCTG+AGG | 0.592913 | 5_3:+67775358 | Msa0826920:CDS |
| TTGAAATGGAGAAACTTGCA+AGG | 0.624337 | 5_3:+67775201 | Msa0826920:CDS |
| GGAGAGACTAAAGCTTCAAG+AGG | 0.631375 | 5_3:+67775175 | Msa0826920:CDS |
| ACTTGCAAGGATACATGCTG+AGG | 0.703443 | 5_3:+67775214 | Msa0826920:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | TACAAAGAAGAATAATGAGT+TGG | + | chr5_3:67775419-67775438 | Msa0826920:CDS | 25.0% |
| ! | TGAAGAAGTTGAAAGAAAAA+AGG | + | chr5_3:67775451-67775470 | Msa0826920:CDS | 25.0% |
| ! | GAAGAAGTTGAAAGAAAAAA+GGG | + | chr5_3:67775452-67775471 | Msa0826920:CDS | 25.0% |
| ! | GATGTGTTAAGAAAAAAGAA+TGG | + | chr5_3:67775496-67775515 | Msa0826920:intron | 25.0% |
| !! | TGAATTAGACAATGAAGTTT+TGG | + | chr5_3:67775519-67775538 | Msa0826920:CDS | 25.0% |
| ! | TGAGAAATTGAAGCAAAAAA+TGG | + | chr5_3:67775621-67775640 | Msa0826920:CDS | 25.0% |
| ! | TACAAAGAAGAATAATGAGT+TGG | + | chr5_3:67775419-67775438 | Msa0826920:CDS | 25.0% |
| ! | TGAAGAAGTTGAAAGAAAAA+AGG | + | chr5_3:67775451-67775470 | Msa0826920:CDS | 25.0% |
| ! | GAAGAAGTTGAAAGAAAAAA+GGG | + | chr5_3:67775452-67775471 | Msa0826920:CDS | 25.0% |
| ! | GATGTGTTAAGAAAAAAGAA+TGG | + | chr5_3:67775496-67775515 | Msa0826920:intron | 25.0% |
| !! | TGAATTAGACAATGAAGTTT+TGG | + | chr5_3:67775519-67775538 | Msa0826920:CDS | 25.0% |
| ! | TGAGAAATTGAAGCAAAAAA+TGG | + | chr5_3:67775621-67775640 | Msa0826920:CDS | 25.0% |
| !! | GGAAGATTTTAAGAAAAGAG+AGG | + | chr5_3:67775235-67775254 | Msa0826920:CDS | 30.0% |
| AGAAAAGAGAGGAAATTTGT+CGG | + | chr5_3:67775246-67775265 | Msa0826920:CDS | 30.0% | |
| ACTATCTCTATCATCTAGAT+CGG | - | chr5_3:67775325-67775344 | None:intergenic | 30.0% | |
| AAGTTGAAAGAAAAAAGGGT+TGG | + | chr5_3:67775456-67775475 | Msa0826920:intron | 30.0% | |
| !!! | TTTTGGAGTTGAAGGAAAAA+AGG | + | chr5_3:67775536-67775555 | Msa0826920:CDS | 30.0% |
| ! | TTTGGAGTTGAAGGAAAAAA+GGG | + | chr5_3:67775537-67775556 | Msa0826920:CDS | 30.0% |
| GATATGCTAAAAACAAAGAG+TGG | + | chr5_3:67775580-67775599 | Msa0826920:CDS | 30.0% | |
| GAAATTGAAGCAAAAAATGG+TGG | + | chr5_3:67775624-67775643 | Msa0826920:CDS | 30.0% | |
| !! | TGAGCTAGAATCTAAAGTTT+TGG | + | chr5_3:67775687-67775706 | Msa0826920:CDS | 30.0% |
| !!! | AGAATCTAAAGTTTTGGAGT+TGG | + | chr5_3:67775693-67775712 | Msa0826920:CDS | 30.0% |
| GATGATAGTAATGCTCTTAA+TGG | + | chr5_3:67775739-67775758 | Msa0826920:CDS | 30.0% | |
| !! | GGAAGATTTTAAGAAAAGAG+AGG | + | chr5_3:67775235-67775254 | Msa0826920:CDS | 30.0% |
| AGAAAAGAGAGGAAATTTGT+CGG | + | chr5_3:67775246-67775265 | Msa0826920:CDS | 30.0% | |
| ACTATCTCTATCATCTAGAT+CGG | - | chr5_3:67775325-67775344 | None:intergenic | 30.0% | |
| AAGTTGAAAGAAAAAAGGGT+TGG | + | chr5_3:67775456-67775475 | Msa0826920:intron | 30.0% | |
| !!! | TTTTGGAGTTGAAGGAAAAA+AGG | + | chr5_3:67775536-67775555 | Msa0826920:CDS | 30.0% |
| ! | TTTGGAGTTGAAGGAAAAAA+GGG | + | chr5_3:67775537-67775556 | Msa0826920:CDS | 30.0% |
| GATATGCTAAAAACAAAGAG+TGG | + | chr5_3:67775580-67775599 | Msa0826920:CDS | 30.0% | |
| GAAATTGAAGCAAAAAATGG+TGG | + | chr5_3:67775624-67775643 | Msa0826920:CDS | 30.0% | |
| !! | TGAGCTAGAATCTAAAGTTT+TGG | + | chr5_3:67775687-67775706 | Msa0826920:CDS | 30.0% |
| !!! | AGAATCTAAAGTTTTGGAGT+TGG | + | chr5_3:67775693-67775712 | Msa0826920:CDS | 30.0% |
| GATGATAGTAATGCTCTTAA+TGG | + | chr5_3:67775739-67775758 | Msa0826920:CDS | 30.0% | |
| ATTCAACCCAAAATCGAACT+TGG | + | chr5_3:67774954-67774973 | Msa0826920:CDS | 35.0% | |
| ! | GATGAACCAAGTTCGATTTT+GGG | - | chr5_3:67774963-67774982 | None:intergenic | 35.0% |
| ! | TGATGAACCAAGTTCGATTT+TGG | - | chr5_3:67774964-67774983 | None:intergenic | 35.0% |
| TTCAACTAGAATCAAGTGGT+TGG | - | chr5_3:67774994-67775013 | None:intergenic | 35.0% | |
| CACTTTCAACTAGAATCAAG+TGG | - | chr5_3:67774998-67775017 | None:intergenic | 35.0% | |
| ! | CTTGATTCTAGTTGAAAGTG+TGG | + | chr5_3:67774998-67775017 | Msa0826920:intron | 35.0% |
| GCAACACTTAAATGAGATCA+GGG | - | chr5_3:67775052-67775071 | None:intergenic | 35.0% | |
| TGCAACACTTAAATGAGATC+AGG | - | chr5_3:67775053-67775072 | None:intergenic | 35.0% | |
| ! | GATCTCATTTAAGTGTTGCA+TGG | + | chr5_3:67775053-67775072 | Msa0826920:intron | 35.0% |
| ! | GAAGTTTTTGACAGAGTTGA+AGG | + | chr5_3:67775089-67775108 | Msa0826920:intron | 35.0% |
| !!! | TGACAGAGTTGAAGGTATTT+TGG | + | chr5_3:67775097-67775116 | Msa0826920:CDS | 35.0% |
| TTGAAATGGAGAAACTTGCA+AGG | + | chr5_3:67775201-67775220 | Msa0826920:CDS | 35.0% | |
| ! | AACGTTATGAAGCTCTTTTG+AGG | + | chr5_3:67775288-67775307 | Msa0826920:intron | 35.0% |
| ! | GTGTTGTTCTTCTAAGAAAG+AGG | + | chr5_3:67775343-67775362 | Msa0826920:CDS | 35.0% |
| AAAGAGGAATATTGAGCTGA+GGG | + | chr5_3:67775359-67775378 | Msa0826920:CDS | 35.0% | |
| AAGAAAAAAGGGTTGGATGA+TGG | + | chr5_3:67775463-67775482 | Msa0826920:intron | 35.0% | |
| AGAAAAAAGGGTTGGATGAT+GGG | + | chr5_3:67775464-67775483 | Msa0826920:intron | 35.0% | |
| !!! | CAATGAAGTTTTGGAGTTGA+AGG | + | chr5_3:67775528-67775547 | Msa0826920:CDS | 35.0% |
| AAAAACAAAGAGTGGTGAGT+TGG | + | chr5_3:67775588-67775607 | Msa0826920:CDS | 35.0% | |
| ! | AAGCAAAAAATGGTGGAAGA+TGG | + | chr5_3:67775631-67775650 | Msa0826920:CDS | 35.0% |
| ATCTACACTCATTGAAAGGT+TGG | + | chr5_3:67775930-67775949 | Msa0826920:intron | 35.0% | |
| ATTCAACCCAAAATCGAACT+TGG | + | chr5_3:67774954-67774973 | Msa0826920:CDS | 35.0% | |
| ! | GATGAACCAAGTTCGATTTT+GGG | - | chr5_3:67774963-67774982 | None:intergenic | 35.0% |
| ! | TGATGAACCAAGTTCGATTT+TGG | - | chr5_3:67774964-67774983 | None:intergenic | 35.0% |
| TTCAACTAGAATCAAGTGGT+TGG | - | chr5_3:67774994-67775013 | None:intergenic | 35.0% | |
| CACTTTCAACTAGAATCAAG+TGG | - | chr5_3:67774998-67775017 | None:intergenic | 35.0% | |
| ! | CTTGATTCTAGTTGAAAGTG+TGG | + | chr5_3:67774998-67775017 | Msa0826920:intron | 35.0% |
| GCAACACTTAAATGAGATCA+GGG | - | chr5_3:67775052-67775071 | None:intergenic | 35.0% | |
| TGCAACACTTAAATGAGATC+AGG | - | chr5_3:67775053-67775072 | None:intergenic | 35.0% | |
| ! | GATCTCATTTAAGTGTTGCA+TGG | + | chr5_3:67775053-67775072 | Msa0826920:intron | 35.0% |
| ! | GAAGTTTTTGACAGAGTTGA+AGG | + | chr5_3:67775089-67775108 | Msa0826920:intron | 35.0% |
| !!! | TGACAGAGTTGAAGGTATTT+TGG | + | chr5_3:67775097-67775116 | Msa0826920:CDS | 35.0% |
| TTGAAATGGAGAAACTTGCA+AGG | + | chr5_3:67775201-67775220 | Msa0826920:CDS | 35.0% | |
| ! | AACGTTATGAAGCTCTTTTG+AGG | + | chr5_3:67775288-67775307 | Msa0826920:intron | 35.0% |
| ! | GTGTTGTTCTTCTAAGAAAG+AGG | + | chr5_3:67775343-67775362 | Msa0826920:CDS | 35.0% |
| AAAGAGGAATATTGAGCTGA+GGG | + | chr5_3:67775359-67775378 | Msa0826920:CDS | 35.0% | |
| AAGAAAAAAGGGTTGGATGA+TGG | + | chr5_3:67775463-67775482 | Msa0826920:intron | 35.0% | |
| AGAAAAAAGGGTTGGATGAT+GGG | + | chr5_3:67775464-67775483 | Msa0826920:intron | 35.0% | |
| !!! | CAATGAAGTTTTGGAGTTGA+AGG | + | chr5_3:67775528-67775547 | Msa0826920:CDS | 35.0% |
| AAAAACAAAGAGTGGTGAGT+TGG | + | chr5_3:67775588-67775607 | Msa0826920:CDS | 35.0% | |
| ! | AAGCAAAAAATGGTGGAAGA+TGG | + | chr5_3:67775631-67775650 | Msa0826920:CDS | 35.0% |
| ATCTACACTCATTGAAAGGT+TGG | + | chr5_3:67775930-67775949 | Msa0826920:intron | 35.0% | |
| AGAGAGGAAATTTGTCGGAA+AGG | + | chr5_3:67775251-67775270 | Msa0826920:CDS | 40.0% | |
| GAGAGGAAATTTGTCGGAAA+GGG | + | chr5_3:67775252-67775271 | Msa0826920:CDS | 40.0% | |
| GAAAGAGGAATATTGAGCTG+AGG | + | chr5_3:67775358-67775377 | Msa0826920:CDS | 40.0% | |
| ! | TTTGGAGTTGGAGAAGTTGA+AGG | + | chr5_3:67775705-67775724 | Msa0826920:CDS | 40.0% |
| TGGAGAAGTTGAAGGAAAAG+TGG | + | chr5_3:67775713-67775732 | Msa0826920:CDS | 40.0% | |
| TCTTTGCAGAGAAACGAAGA+CGG | - | chr5_3:67775826-67775845 | None:intergenic | 40.0% | |
| TGAGGTTGGAAATGACATTG+TGG | - | chr5_3:67775860-67775879 | None:intergenic | 40.0% | |
| AGGCATCTACACTCATTGAA+AGG | + | chr5_3:67775926-67775945 | Msa0826920:intron | 40.0% | |
| CATTGCATGAAAGAGTTGCA+AGG | - | chr5_3:67775969-67775988 | None:intergenic | 40.0% | |
| CGAGTAAGATCTCACTTCTT+TGG | + | chr5_3:67776013-67776032 | Msa0826920:intron | 40.0% | |
| ATTCCAGTCAAAGCACGTAT+TGG | + | chr5_3:67776066-67776085 | Msa0826920:intron | 40.0% | |
| AGAGAGGAAATTTGTCGGAA+AGG | + | chr5_3:67775251-67775270 | Msa0826920:CDS | 40.0% | |
| GAGAGGAAATTTGTCGGAAA+GGG | + | chr5_3:67775252-67775271 | Msa0826920:CDS | 40.0% | |
| GAAAGAGGAATATTGAGCTG+AGG | + | chr5_3:67775358-67775377 | Msa0826920:CDS | 40.0% | |
| ! | TTTGGAGTTGGAGAAGTTGA+AGG | + | chr5_3:67775705-67775724 | Msa0826920:CDS | 40.0% |
| TGGAGAAGTTGAAGGAAAAG+TGG | + | chr5_3:67775713-67775732 | Msa0826920:CDS | 40.0% | |
| TCTTTGCAGAGAAACGAAGA+CGG | - | chr5_3:67775826-67775845 | None:intergenic | 40.0% | |
| TGAGGTTGGAAATGACATTG+TGG | - | chr5_3:67775860-67775879 | None:intergenic | 40.0% | |
| AGGCATCTACACTCATTGAA+AGG | + | chr5_3:67775926-67775945 | Msa0826920:intron | 40.0% | |
| CATTGCATGAAAGAGTTGCA+AGG | - | chr5_3:67775969-67775988 | None:intergenic | 40.0% | |
| CGAGTAAGATCTCACTTCTT+TGG | + | chr5_3:67776013-67776032 | Msa0826920:intron | 40.0% | |
| ATTCCAGTCAAAGCACGTAT+TGG | + | chr5_3:67776066-67776085 | Msa0826920:intron | 40.0% | |
| !! | TCTGCTGCAAGTGTTGAATC+TGG | - | chr5_3:67775145-67775164 | None:intergenic | 45.0% |
| CAACACTTGCAGCAGAATGT+TGG | + | chr5_3:67775149-67775168 | Msa0826920:CDS | 45.0% | |
| CTTGCAGCAGAATGTTGGAA+TGG | + | chr5_3:67775154-67775173 | Msa0826920:CDS | 45.0% | |
| GGAGAGACTAAAGCTTCAAG+AGG | + | chr5_3:67775175-67775194 | Msa0826920:CDS | 45.0% | |
| GCTTCAAGAGGAGCTTGAAA+TGG | + | chr5_3:67775187-67775206 | Msa0826920:CDS | 45.0% | |
| ACTTGCAAGGATACATGCTG+AGG | + | chr5_3:67775214-67775233 | Msa0826920:CDS | 45.0% | |
| TGAGCTGAGGGAATTGTTTG+AGG | + | chr5_3:67775371-67775390 | Msa0826920:CDS | 45.0% | |
| CTGAGGGAATTGTTTGAGGA+AGG | + | chr5_3:67775375-67775394 | Msa0826920:CDS | 45.0% | |
| ! | GAATAATGAGTTGGAGTGCG+AGG | + | chr5_3:67775428-67775447 | Msa0826920:CDS | 45.0% |
| GGAGTTGAAGGAAAAAAGGG+TGG | + | chr5_3:67775540-67775559 | Msa0826920:CDS | 45.0% | |
| TCTTTGCTCCCTTTGTTCAG+CGG | + | chr5_3:67775766-67775785 | Msa0826920:intron | 45.0% | |
| CACTCTTATGGAGTAGTTGC+CGG | - | chr5_3:67775799-67775818 | None:intergenic | 45.0% | |
| GAAGACGGTCATCACTCTTA+TGG | - | chr5_3:67775811-67775830 | None:intergenic | 45.0% | |
| !! | AATGTTGGTGGCAATGAGGT+TGG | - | chr5_3:67775874-67775893 | None:intergenic | 45.0% |
| !! | AGAGAATGTTGGTGGCAATG+AGG | - | chr5_3:67775878-67775897 | None:intergenic | 45.0% |
| TCAATGAGTGTAGATGCCTC+TGG | - | chr5_3:67775925-67775944 | None:intergenic | 45.0% | |
| TGAAAGAGTTGCAAGGTTGG+AGG | - | chr5_3:67775962-67775981 | None:intergenic | 45.0% | |
| GCATGAAAGAGTTGCAAGGT+TGG | - | chr5_3:67775965-67775984 | None:intergenic | 45.0% | |
| !! | TCTGCTGCAAGTGTTGAATC+TGG | - | chr5_3:67775145-67775164 | None:intergenic | 45.0% |
| CAACACTTGCAGCAGAATGT+TGG | + | chr5_3:67775149-67775168 | Msa0826920:CDS | 45.0% | |
| CTTGCAGCAGAATGTTGGAA+TGG | + | chr5_3:67775154-67775173 | Msa0826920:CDS | 45.0% | |
| GGAGAGACTAAAGCTTCAAG+AGG | + | chr5_3:67775175-67775194 | Msa0826920:CDS | 45.0% | |
| GCTTCAAGAGGAGCTTGAAA+TGG | + | chr5_3:67775187-67775206 | Msa0826920:CDS | 45.0% | |
| ACTTGCAAGGATACATGCTG+AGG | + | chr5_3:67775214-67775233 | Msa0826920:CDS | 45.0% | |
| TGAGCTGAGGGAATTGTTTG+AGG | + | chr5_3:67775371-67775390 | Msa0826920:CDS | 45.0% | |
| CTGAGGGAATTGTTTGAGGA+AGG | + | chr5_3:67775375-67775394 | Msa0826920:CDS | 45.0% | |
| ! | GAATAATGAGTTGGAGTGCG+AGG | + | chr5_3:67775428-67775447 | Msa0826920:CDS | 45.0% |
| GGAGTTGAAGGAAAAAAGGG+TGG | + | chr5_3:67775540-67775559 | Msa0826920:CDS | 45.0% | |
| TCTTTGCTCCCTTTGTTCAG+CGG | + | chr5_3:67775766-67775785 | Msa0826920:intron | 45.0% | |
| CACTCTTATGGAGTAGTTGC+CGG | - | chr5_3:67775799-67775818 | None:intergenic | 45.0% | |
| GAAGACGGTCATCACTCTTA+TGG | - | chr5_3:67775811-67775830 | None:intergenic | 45.0% | |
| !! | AATGTTGGTGGCAATGAGGT+TGG | - | chr5_3:67775874-67775893 | None:intergenic | 45.0% |
| !! | AGAGAATGTTGGTGGCAATG+AGG | - | chr5_3:67775878-67775897 | None:intergenic | 45.0% |
| TCAATGAGTGTAGATGCCTC+TGG | - | chr5_3:67775925-67775944 | None:intergenic | 45.0% | |
| TGAAAGAGTTGCAAGGTTGG+AGG | - | chr5_3:67775962-67775981 | None:intergenic | 45.0% | |
| GCATGAAAGAGTTGCAAGGT+TGG | - | chr5_3:67775965-67775984 | None:intergenic | 45.0% | |
| GTACTCAGCCGCTGAACAAA+GGG | - | chr5_3:67775777-67775796 | None:intergenic | 50.0% | |
| TTTGTTCAGCGGCTGAGTAC+CGG | + | chr5_3:67775777-67775796 | Msa0826920:intron | 50.0% | |
| GTGGATGGAGAGAATGTTGG+TGG | - | chr5_3:67775886-67775905 | None:intergenic | 50.0% | |
| GACGTGGATGGAGAGAATGT+TGG | - | chr5_3:67775889-67775908 | None:intergenic | 50.0% | |
| ATGAGTGTAGATGCCTCTGG+TGG | - | chr5_3:67775922-67775941 | None:intergenic | 50.0% | |
| AGAGTTGCAAGGTTGGAGGA+TGG | - | chr5_3:67775958-67775977 | None:intergenic | 50.0% | |
| CCTCCAATACGTGCTTTGAC+TGG | - | chr5_3:67776072-67776091 | None:intergenic | 50.0% | |
| CCAGTCAAAGCACGTATTGG+AGG | + | chr5_3:67776069-67776088 | Msa0826920:intron | 50.0% | |
| GTACTCAGCCGCTGAACAAA+GGG | - | chr5_3:67775777-67775796 | None:intergenic | 50.0% | |
| TTTGTTCAGCGGCTGAGTAC+CGG | + | chr5_3:67775777-67775796 | Msa0826920:intron | 50.0% | |
| GTGGATGGAGAGAATGTTGG+TGG | - | chr5_3:67775886-67775905 | None:intergenic | 50.0% | |
| GACGTGGATGGAGAGAATGT+TGG | - | chr5_3:67775889-67775908 | None:intergenic | 50.0% | |
| ATGAGTGTAGATGCCTCTGG+TGG | - | chr5_3:67775922-67775941 | None:intergenic | 50.0% | |
| AGAGTTGCAAGGTTGGAGGA+TGG | - | chr5_3:67775958-67775977 | None:intergenic | 50.0% | |
| CCTCCAATACGTGCTTTGAC+TGG | - | chr5_3:67776072-67776091 | None:intergenic | 50.0% | |
| CCAGTCAAAGCACGTATTGG+AGG | + | chr5_3:67776069-67776088 | Msa0826920:intron | 50.0% | |
| ! | GAGTGGTGAGTTGGAGTGTG+AGG | + | chr5_3:67775597-67775616 | Msa0826920:CDS | 55.0% |
| GGTACTCAGCCGCTGAACAA+AGG | - | chr5_3:67775778-67775797 | None:intergenic | 55.0% | |
| GGTGGAAACGATGACGTGGA+TGG | - | chr5_3:67775901-67775920 | None:intergenic | 55.0% | |
| !! | TGGTGGTGGAAACGATGACG+TGG | - | chr5_3:67775905-67775924 | None:intergenic | 55.0% |
| GTCATCGTTTCCACCACCAG+AGG | + | chr5_3:67775906-67775925 | Msa0826920:intron | 55.0% | |
| AGTGTAGATGCCTCTGGTGG+TGG | - | chr5_3:67775919-67775938 | None:intergenic | 55.0% | |
| ! | GAGTGGTGAGTTGGAGTGTG+AGG | + | chr5_3:67775597-67775616 | Msa0826920:CDS | 55.0% |
| GGTACTCAGCCGCTGAACAA+AGG | - | chr5_3:67775778-67775797 | None:intergenic | 55.0% | |
| GGTGGAAACGATGACGTGGA+TGG | - | chr5_3:67775901-67775920 | None:intergenic | 55.0% | |
| !! | TGGTGGTGGAAACGATGACG+TGG | - | chr5_3:67775905-67775924 | None:intergenic | 55.0% |
| GTCATCGTTTCCACCACCAG+AGG | + | chr5_3:67775906-67775925 | Msa0826920:intron | 55.0% | |
| AGTGTAGATGCCTCTGGTGG+TGG | - | chr5_3:67775919-67775938 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 67774948 | 67776095 | 67774948 | ID=Msa0826920;Name=Msa0826920 |
| chr5_3 | mRNA | 67774948 | 67776095 | 67774948 | ID=Msa0826920-mRNA-1;Parent=Msa0826920;Name=Msa0826920-mRNA-1;_AED=0.37;_eAED=0.37;_QI=0|0|0|1|0.25|0.2|5|0|222 |
| chr5_3 | exon | 67774948 | 67775014 | 67774948 | ID=Msa0826920-mRNA-1:exon:21193;Parent=Msa0826920-mRNA-1 |
| chr5_3 | exon | 67775090 | 67775285 | 67775090 | ID=Msa0826920-mRNA-1:exon:21194;Parent=Msa0826920-mRNA-1 |
| chr5_3 | exon | 67775338 | 67775473 | 67775338 | ID=Msa0826920-mRNA-1:exon:21195;Parent=Msa0826920-mRNA-1 |
| chr5_3 | exon | 67775514 | 67775760 | 67775514 | ID=Msa0826920-mRNA-1:exon:21196;Parent=Msa0826920-mRNA-1 |
| chr5_3 | exon | 67776073 | 67776095 | 67776073 | ID=Msa0826920-mRNA-1:exon:21197;Parent=Msa0826920-mRNA-1 |
| chr5_3 | CDS | 67774948 | 67775014 | 67774948 | ID=Msa0826920-mRNA-1:cds;Parent=Msa0826920-mRNA-1 |
| chr5_3 | CDS | 67775090 | 67775285 | 67775090 | ID=Msa0826920-mRNA-1:cds;Parent=Msa0826920-mRNA-1 |
| chr5_3 | CDS | 67775338 | 67775473 | 67775338 | ID=Msa0826920-mRNA-1:cds;Parent=Msa0826920-mRNA-1 |
| chr5_3 | CDS | 67775514 | 67775760 | 67775514 | ID=Msa0826920-mRNA-1:cds;Parent=Msa0826920-mRNA-1 |
| chr5_3 | CDS | 67776073 | 67776095 | 67776073 | ID=Msa0826920-mRNA-1:cds;Parent=Msa0826920-mRNA-1 |
| Gene Sequence |
| Protein sequence |
