Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0743760 | RHN57948.1 | 68.462 | 130 | 19 | 2 | 98 | 205 | 285 | 414 | 4.21e-35 | 143 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0743760 | A0A396HZM9 | 68.462 | 130 | 19 | 2 | 98 | 205 | 285 | 414 | 2.01e-35 | 143 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0619980 | Msa0743760 | 0.800886 | 1.167712e-48 | -8.615850e-47 |
| Msa0743760 | Msa0810020 | 0.825166 | 5.435330e-54 | -8.615850e-47 |
| Msa0743760 | Msa0826920 | 0.848077 | 7.712269e-60 | -8.615850e-47 |
| Msa0743760 | Msa0937550 | 0.805195 | 1.501052e-49 | -8.615850e-47 |
| Msa0743760 | Msa1049010 | 0.800170 | 1.634066e-48 | -8.615850e-47 |
| Msa0743760 | Msa1379990 | 0.806577 | 7.687696e-50 | -8.615850e-47 |
| Msa0436500 | Msa0743760 | 0.825578 | 4.342743e-54 | -8.615850e-47 |
| Msa0280490 | Msa0743760 | 0.806563 | 7.742537e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0743760 | MtrunA17_Chr5g0445861 | 68.462 | 130 | 19 | 2 | 98 | 205 | 285 | 414 | 3.87e-39 | 143 |
| Msa0743760 | MtrunA17_Chr5g0445881 | 43.478 | 115 | 47 | 3 | 105 | 203 | 240 | 352 | 3.23e-13 | 70.5 |
| Msa0743760 | MtrunA17_Chr5g0445871 | 42.391 | 92 | 39 | 1 | 125 | 202 | 4 | 95 | 1.60e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 66 sgRNAs with CRISPR-Local
Find 166 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATGATAGTAATGCTCTTAA+TGG | 0.300446 | 5_1:-64263019 | None:intergenic |
| GGAAACAGTGAACATGAATT+TGG | 0.301643 | 5_1:-64262633 | None:intergenic |
| TGAATTAGACAATGAAGTTT+TGG | 0.307370 | 5_1:-64263239 | None:intergenic |
| TTATCCTCCAATACGTGCTT+TGG | 0.360658 | 5_1:+64262685 | Msa0743760:CDS |
| TGAGCTAGAATCTAAAGTTT+TGG | 0.370227 | 5_1:-64263071 | None:intergenic |
| GAAGACGGTCATCACTCTTA+TGG | 0.390645 | 5_1:+64262950 | Msa0743760:CDS |
| CGAGTAAGATCTCACCTCTT+TGG | 0.397674 | 5_1:-64262745 | None:intergenic |
| CACTCTTATGGAGTAGTTGC+CGG | 0.420211 | 5_1:+64262962 | Msa0743760:CDS |
| CCTCCAATACGTGCTTTGGC+TGG | 0.445507 | 5_1:+64262689 | Msa0743760:CDS |
| TTTGGAGTTGGAGAAGTTGA+AGG | 0.446585 | 5_1:-64263053 | None:intergenic |
| ATTAGTGGATGAGAAATGTA+AGG | 0.459327 | 5_1:-64262576 | Msa0743750:CDS |
| GCATGAAAGGGTTGCAAGGT+TGG | 0.459332 | 5_1:-64262510 | Msa0743750:CDS |
| TGAGCTGAGGGAATTGTTTG+AGG | 0.463166 | 5_1:-64263387 | None:intergenic |
| AGTTCAGAGCATTGCATGAA+AGG | 0.464493 | 5_1:-64262523 | Msa0743750:CDS |
| ATTCCAGCCAAAGCACGTAT+TGG | 0.465538 | 5_1:-64262692 | None:intergenic |
| TTTGTTCAGCGGCTGAGTAC+CGG | 0.478342 | 5_1:-64262981 | None:intergenic |
| AAAGAGGAATATTGAGCTGA+GGG | 0.483756 | 5_1:-64263399 | None:intergenic |
| GTACTCAGCCGCTGAACAAA+GGG | 0.485032 | 5_1:+64262984 | Msa0743760:CDS |
| GAACGAAAACAGAAAATTAG+TGG | 0.485865 | 5_1:-64262591 | Msa0743750:CDS |
| GTTCAGAGCATTGCATGAAA+GGG | 0.491311 | 5_1:-64262522 | Msa0743750:CDS |
| GTGTTGTTCTTCTAAGAAAG+AGG | 0.494761 | 5_1:-64263415 | None:intergenic |
| AATGTTGGTGGCAATGAGGT+TGG | 0.498941 | 5_1:-64262419 | Msa0743750:CDS |
| AATGTTGGTGGCAATGAGGT+TGG | 0.498941 | 5_1:+64262887 | Msa0743760:CDS |
| CTGAGGGAATTGTTTGAGGA+AGG | 0.504261 | 5_1:-64263383 | None:intergenic |
| TGGAGAAGTTGAAGGAAAAG+TGG | 0.505770 | 5_1:-64263045 | None:intergenic |
| GCATGAAAGAGTTGCAAGGT+TGG | 0.521848 | 5_1:+64262796 | Msa0743760:CDS |
| TACAAAGAAGAATAATGAGT+TGG | 0.524986 | 5_1:-64263339 | None:intergenic |
| AGTGTAGATGCCTCTGGTGG+TGG | 0.536824 | 5_1:-64262464 | Msa0743750:CDS |
| AGTGTAGATGCCTCTGGTGG+TGG | 0.536824 | 5_1:+64262842 | Msa0743760:CDS |
| TCAATGAGTGTAGATGCCTC+TGG | 0.542665 | 5_1:-64262470 | Msa0743750:CDS |
| TCAATGAGTGTAGATGCCTC+TGG | 0.542665 | 5_1:+64262836 | Msa0743760:CDS |
| CCAGCCAAAGCACGTATTGG+AGG | 0.543415 | 5_1:-64262689 | None:intergenic |
| GAATAATGAGTTGGAGTGCG+AGG | 0.543935 | 5_1:-64263330 | None:intergenic |
| ATCTACACTCATTGAAAGGT+TGG | 0.545608 | 5_1:+64262478 | Msa0743760:CDS |
| ATCTACACTCATTGAAAGGT+TGG | 0.545608 | 5_1:-64262828 | None:intergenic |
| GGTACTCAGCCGCTGAACAA+AGG | 0.561477 | 5_1:+64262983 | Msa0743760:CDS |
| GAGTGGTGAGTTGGAGTGTG+AGG | 0.568828 | 5_1:-64263161 | None:intergenic |
| CATTGCATGAAAGGGTTGCA+AGG | 0.569953 | 5_1:-64262514 | Msa0743750:CDS |
| GAAAGAGGAATATTGAGCTG+AGG | 0.592913 | 5_1:-64263400 | None:intergenic |
| AGGGTTGCAAGGTTGGAGGA+TGG | 0.597876 | 5_1:-64262503 | Msa0743750:CDS |
| AGAGTTGCAAGGTTGGAGGA+TGG | 0.597876 | 5_1:+64262803 | Msa0743760:CDS |
| TTCAGAGCATTGCACCAAAG+AGG | 0.600944 | 5_1:+64262731 | Msa0743760:CDS |
| TCTTTGCTCCCTTTGTTCAG+CGG | 0.604084 | 5_1:-64262992 | None:intergenic |
| AGGCATCTACACTCATTGAA+AGG | 0.614901 | 5_1:+64262474 | Msa0743760:CDS |
| AGGCATCTACACTCATTGAA+AGG | 0.614901 | 5_1:-64262832 | None:intergenic |
| CATTGCATGAAAGAGTTGCA+AGG | 0.620518 | 5_1:+64262792 | Msa0743760:CDS |
| TTAGTGGATGAGAAATGTAA+GGG | 0.622143 | 5_1:-64262575 | Msa0743750:CDS |
| TGAAAGGGTTGCAAGGTTGG+AGG | 0.631396 | 5_1:-64262507 | Msa0743750:CDS |
| TGAAAGAGTTGCAAGGTTGG+AGG | 0.631396 | 5_1:+64262799 | Msa0743760:CDS |
| GGTGGAAACGATGACGTGGA+TGG | 0.636584 | 5_1:-64262446 | Msa0743750:CDS |
| GGTGGAAACGATGACGTGGA+TGG | 0.636584 | 5_1:+64262860 | Msa0743760:CDS |
| TGGCAATTATAAGCGAGCTG+AGG | 0.655702 | 5_1:-64262613 | Msa0743750:CDS |
| GTGGATGGAGAGAATGTTGG+TGG | 0.665079 | 5_1:-64262431 | Msa0743750:CDS |
| GTGGATGGAGAGAATGTTGG+TGG | 0.665079 | 5_1:+64262875 | Msa0743760:CDS |
| ATGAGTGTAGATGCCTCTGG+TGG | 0.681194 | 5_1:-64262467 | Msa0743750:CDS |
| ATGAGTGTAGATGCCTCTGG+TGG | 0.681194 | 5_1:+64262839 | Msa0743760:CDS |
| AGAGAATGTTGGTGGCAATG+AGG | 0.682533 | 5_1:-64262423 | Msa0743750:CDS |
| AGAGAATGTTGGTGGCAATG+AGG | 0.682533 | 5_1:+64262883 | Msa0743760:CDS |
| GACGTGGATGGAGAGAATGT+TGG | 0.683270 | 5_1:-64262434 | Msa0743750:CDS |
| GACGTGGATGGAGAGAATGT+TGG | 0.683270 | 5_1:+64262872 | Msa0743760:CDS |
| TGAGGTTGGAAATGACATTG+TGG | 0.683603 | 5_1:+64262901 | Msa0743760:CDS |
| TGGTGGTGGAAACGATGACG+TGG | 0.695643 | 5_1:-64262450 | Msa0743750:CDS |
| TGGTGGTGGAAACGATGACG+TGG | 0.695643 | 5_1:+64262856 | Msa0743760:CDS |
| TCTTTGCAGAGAAACGAAGA+CGG | 0.696340 | 5_1:+64262935 | Msa0743760:CDS |
| GTCATCGTTTCCACCACCAG+AGG | 0.705777 | 5_1:+64262454 | Msa0743760:CDS |
| GTCATCGTTTCCACCACCAG+AGG | 0.705777 | 5_1:-64262852 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAAAAAAATGCTTTAAAAA+TGG | - | chr5_1:64262668-64262687 | None:intergenic | 10.0% |
| !!! | TAAAAAAAATGCTTTAAAAA+TGG | - | chr5_1:64262668-64262687 | None:intergenic | 10.0% |
| ! | TGAGAAATTGAAGCAAAAAA+TGG | - | chr5_1:64263140-64263159 | None:intergenic | 25.0% |
| !! | TGAATTAGACAATGAAGTTT+TGG | - | chr5_1:64263242-64263261 | None:intergenic | 25.0% |
| ! | GATGTGTTAAGAAAAAAGAA+TGG | - | chr5_1:64263265-64263284 | None:intergenic | 25.0% |
| ! | GAAGAAGTTGAAAGAAAAAA+GGG | - | chr5_1:64263309-64263328 | None:intergenic | 25.0% |
| ! | TGAAGAAGTTGAAAGAAAAA+AGG | - | chr5_1:64263310-64263329 | None:intergenic | 25.0% |
| ! | TACAAAGAAGAATAATGAGT+TGG | - | chr5_1:64263342-64263361 | None:intergenic | 25.0% |
| ! | TGAGAAATTGAAGCAAAAAA+TGG | - | chr5_1:64263140-64263159 | None:intergenic | 25.0% |
| !! | TGAATTAGACAATGAAGTTT+TGG | - | chr5_1:64263242-64263261 | None:intergenic | 25.0% |
| ! | GATGTGTTAAGAAAAAAGAA+TGG | - | chr5_1:64263265-64263284 | None:intergenic | 25.0% |
| ! | GAAGAAGTTGAAAGAAAAAA+GGG | - | chr5_1:64263309-64263328 | None:intergenic | 25.0% |
| ! | TGAAGAAGTTGAAAGAAAAA+AGG | - | chr5_1:64263310-64263329 | None:intergenic | 25.0% |
| ! | TACAAAGAAGAATAATGAGT+TGG | - | chr5_1:64263342-64263361 | None:intergenic | 25.0% |
| ! | TTAGTGGATGAGAAATGTAA+GGG | - | chr5_1:64262578-64262597 | Msa0743750:CDS | 30.0% |
| ! | ATTAGTGGATGAGAAATGTA+AGG | - | chr5_1:64262579-64262598 | Msa0743750:CDS | 30.0% |
| GAACGAAAACAGAAAATTAG+TGG | - | chr5_1:64262594-64262613 | Msa0743750:CDS | 30.0% | |
| ! | CTTTAAAAATGGCGAATTGA+AGG | - | chr5_1:64262657-64262676 | None:intergenic | 30.0% |
| GATGATAGTAATGCTCTTAA+TGG | - | chr5_1:64263022-64263041 | None:intergenic | 30.0% | |
| !!! | AGAATCTAAAGTTTTGGAGT+TGG | - | chr5_1:64263068-64263087 | None:intergenic | 30.0% |
| !! | TGAGCTAGAATCTAAAGTTT+TGG | - | chr5_1:64263074-64263093 | None:intergenic | 30.0% |
| GAAATTGAAGCAAAAAATGG+TGG | - | chr5_1:64263137-64263156 | None:intergenic | 30.0% | |
| GATATGCTAAAAACAAAGAG+TGG | - | chr5_1:64263181-64263200 | None:intergenic | 30.0% | |
| ! | TTTGGAGTTGAAGGAAAAAA+GGG | - | chr5_1:64263224-64263243 | None:intergenic | 30.0% |
| !!! | TTTTGGAGTTGAAGGAAAAA+AGG | - | chr5_1:64263225-64263244 | None:intergenic | 30.0% |
| AAGTTGAAAGAAAAAAGGGT+TGG | - | chr5_1:64263305-64263324 | None:intergenic | 30.0% | |
| ! | TTAGTGGATGAGAAATGTAA+GGG | - | chr5_1:64262578-64262597 | Msa0743750:CDS | 30.0% |
| ! | ATTAGTGGATGAGAAATGTA+AGG | - | chr5_1:64262579-64262598 | Msa0743750:CDS | 30.0% |
| GAACGAAAACAGAAAATTAG+TGG | - | chr5_1:64262594-64262613 | Msa0743750:CDS | 30.0% | |
| ! | CTTTAAAAATGGCGAATTGA+AGG | - | chr5_1:64262657-64262676 | None:intergenic | 30.0% |
| GATGATAGTAATGCTCTTAA+TGG | - | chr5_1:64263022-64263041 | None:intergenic | 30.0% | |
| !!! | AGAATCTAAAGTTTTGGAGT+TGG | - | chr5_1:64263068-64263087 | None:intergenic | 30.0% |
| !! | TGAGCTAGAATCTAAAGTTT+TGG | - | chr5_1:64263074-64263093 | None:intergenic | 30.0% |
| GAAATTGAAGCAAAAAATGG+TGG | - | chr5_1:64263137-64263156 | None:intergenic | 30.0% | |
| GATATGCTAAAAACAAAGAG+TGG | - | chr5_1:64263181-64263200 | None:intergenic | 30.0% | |
| ! | TTTGGAGTTGAAGGAAAAAA+GGG | - | chr5_1:64263224-64263243 | None:intergenic | 30.0% |
| !!! | TTTTGGAGTTGAAGGAAAAA+AGG | - | chr5_1:64263225-64263244 | None:intergenic | 30.0% |
| AAGTTGAAAGAAAAAAGGGT+TGG | - | chr5_1:64263305-64263324 | None:intergenic | 30.0% | |
| ATCTACACTCATTGAAAGGT+TGG | + | chr5_1:64262478-64262497 | Msa0743760:CDS | 35.0% | |
| GGAAACAGTGAACATGAATT+TGG | - | chr5_1:64262636-64262655 | None:intergenic | 35.0% | |
| ATCTACACTCATTGAAAGGT+TGG | - | chr5_1:64262478-64262497 | Msa0743750:CDS | 35.0% | |
| ! | AAGCAAAAAATGGTGGAAGA+TGG | - | chr5_1:64263130-64263149 | None:intergenic | 35.0% |
| AAAAACAAAGAGTGGTGAGT+TGG | - | chr5_1:64263173-64263192 | None:intergenic | 35.0% | |
| !!! | CAATGAAGTTTTGGAGTTGA+AGG | - | chr5_1:64263233-64263252 | None:intergenic | 35.0% |
| AGAAAAAAGGGTTGGATGAT+GGG | - | chr5_1:64263297-64263316 | None:intergenic | 35.0% | |
| AAGAAAAAAGGGTTGGATGA+TGG | - | chr5_1:64263298-64263317 | None:intergenic | 35.0% | |
| AAAGAGGAATATTGAGCTGA+GGG | - | chr5_1:64263402-64263421 | None:intergenic | 35.0% | |
| ATCTACACTCATTGAAAGGT+TGG | + | chr5_1:64262478-64262497 | Msa0743760:CDS | 35.0% | |
| GGAAACAGTGAACATGAATT+TGG | - | chr5_1:64262636-64262655 | None:intergenic | 35.0% | |
| ATCTACACTCATTGAAAGGT+TGG | - | chr5_1:64262478-64262497 | Msa0743750:CDS | 35.0% | |
| ! | AAGCAAAAAATGGTGGAAGA+TGG | - | chr5_1:64263130-64263149 | None:intergenic | 35.0% |
| AAAAACAAAGAGTGGTGAGT+TGG | - | chr5_1:64263173-64263192 | None:intergenic | 35.0% | |
| !!! | CAATGAAGTTTTGGAGTTGA+AGG | - | chr5_1:64263233-64263252 | None:intergenic | 35.0% |
| AGAAAAAAGGGTTGGATGAT+GGG | - | chr5_1:64263297-64263316 | None:intergenic | 35.0% | |
| AAGAAAAAAGGGTTGGATGA+TGG | - | chr5_1:64263298-64263317 | None:intergenic | 35.0% | |
| AAAGAGGAATATTGAGCTGA+GGG | - | chr5_1:64263402-64263421 | None:intergenic | 35.0% | |
| AGGCATCTACACTCATTGAA+AGG | + | chr5_1:64262474-64262493 | Msa0743760:CDS | 40.0% | |
| !! | GTTCAGAGCATTGCATGAAA+GGG | - | chr5_1:64262525-64262544 | Msa0743750:CDS | 40.0% |
| !! | AGTTCAGAGCATTGCATGAA+AGG | - | chr5_1:64262526-64262545 | Msa0743750:CDS | 40.0% |
| TTATCCTCCAATACGTGCTT+TGG | + | chr5_1:64262685-64262704 | Msa0743760:CDS | 40.0% | |
| CATTGCATGAAAGAGTTGCA+AGG | + | chr5_1:64262792-64262811 | Msa0743760:CDS | 40.0% | |
| AGGCATCTACACTCATTGAA+AGG | - | chr5_1:64262474-64262493 | Msa0743750:CDS | 40.0% | |
| TGAGGTTGGAAATGACATTG+TGG | + | chr5_1:64262901-64262920 | Msa0743760:CDS | 40.0% | |
| TCTTTGCAGAGAAACGAAGA+CGG | + | chr5_1:64262935-64262954 | Msa0743760:CDS | 40.0% | |
| TGGAGAAGTTGAAGGAAAAG+TGG | - | chr5_1:64263048-64263067 | None:intergenic | 40.0% | |
| ! | TTTGGAGTTGGAGAAGTTGA+AGG | - | chr5_1:64263056-64263075 | None:intergenic | 40.0% |
| GAAAGAGGAATATTGAGCTG+AGG | - | chr5_1:64263403-64263422 | None:intergenic | 40.0% | |
| AGGCATCTACACTCATTGAA+AGG | + | chr5_1:64262474-64262493 | Msa0743760:CDS | 40.0% | |
| !! | GTTCAGAGCATTGCATGAAA+GGG | - | chr5_1:64262525-64262544 | Msa0743750:CDS | 40.0% |
| !! | AGTTCAGAGCATTGCATGAA+AGG | - | chr5_1:64262526-64262545 | Msa0743750:CDS | 40.0% |
| TTATCCTCCAATACGTGCTT+TGG | + | chr5_1:64262685-64262704 | Msa0743760:CDS | 40.0% | |
| CATTGCATGAAAGAGTTGCA+AGG | + | chr5_1:64262792-64262811 | Msa0743760:CDS | 40.0% | |
| AGGCATCTACACTCATTGAA+AGG | - | chr5_1:64262474-64262493 | Msa0743750:CDS | 40.0% | |
| TGAGGTTGGAAATGACATTG+TGG | + | chr5_1:64262901-64262920 | Msa0743760:CDS | 40.0% | |
| TCTTTGCAGAGAAACGAAGA+CGG | + | chr5_1:64262935-64262954 | Msa0743760:CDS | 40.0% | |
| TGGAGAAGTTGAAGGAAAAG+TGG | - | chr5_1:64263048-64263067 | None:intergenic | 40.0% | |
| ! | TTTGGAGTTGGAGAAGTTGA+AGG | - | chr5_1:64263056-64263075 | None:intergenic | 40.0% |
| GAAAGAGGAATATTGAGCTG+AGG | - | chr5_1:64263403-64263422 | None:intergenic | 40.0% | |
| !! | AATGTTGGTGGCAATGAGGT+TGG | - | chr5_1:64262887-64262906 | None:intergenic | 45.0% |
| !! | AGAGAATGTTGGTGGCAATG+AGG | - | chr5_1:64262883-64262902 | None:intergenic | 45.0% |
| TCAATGAGTGTAGATGCCTC+TGG | - | chr5_1:64262836-64262855 | None:intergenic | 45.0% | |
| CATTGCATGAAAGGGTTGCA+AGG | - | chr5_1:64262517-64262536 | Msa0743750:CDS | 45.0% | |
| TGGCAATTATAAGCGAGCTG+AGG | - | chr5_1:64262616-64262635 | Msa0743750:CDS | 45.0% | |
| ATTCCAGCCAAAGCACGTAT+TGG | - | chr5_1:64262695-64262714 | None:intergenic | 45.0% | |
| !! | TTCAGAGCATTGCACCAAAG+AGG | + | chr5_1:64262731-64262750 | Msa0743760:CDS | 45.0% |
| CGAGTAAGATCTCACCTCTT+TGG | - | chr5_1:64262748-64262767 | None:intergenic | 45.0% | |
| GCATGAAAGAGTTGCAAGGT+TGG | + | chr5_1:64262796-64262815 | Msa0743760:CDS | 45.0% | |
| TGAAAGAGTTGCAAGGTTGG+AGG | + | chr5_1:64262799-64262818 | Msa0743760:CDS | 45.0% | |
| TCAATGAGTGTAGATGCCTC+TGG | + | chr5_1:64262836-64262855 | Msa0743760:CDS | 45.0% | |
| !! | AGAGAATGTTGGTGGCAATG+AGG | + | chr5_1:64262883-64262902 | Msa0743760:CDS | 45.0% |
| !! | AATGTTGGTGGCAATGAGGT+TGG | + | chr5_1:64262887-64262906 | Msa0743760:CDS | 45.0% |
| GAAGACGGTCATCACTCTTA+TGG | + | chr5_1:64262950-64262969 | Msa0743760:CDS | 45.0% | |
| CACTCTTATGGAGTAGTTGC+CGG | + | chr5_1:64262962-64262981 | Msa0743760:CDS | 45.0% | |
| TCTTTGCTCCCTTTGTTCAG+CGG | - | chr5_1:64262995-64263014 | None:intergenic | 45.0% | |
| GGAGTTGAAGGAAAAAAGGG+TGG | - | chr5_1:64263221-64263240 | None:intergenic | 45.0% | |
| ! | GAATAATGAGTTGGAGTGCG+AGG | - | chr5_1:64263333-64263352 | None:intergenic | 45.0% |
| CTGAGGGAATTGTTTGAGGA+AGG | - | chr5_1:64263386-64263405 | None:intergenic | 45.0% | |
| TGAGCTGAGGGAATTGTTTG+AGG | - | chr5_1:64263390-64263409 | None:intergenic | 45.0% | |
| !! | AATGTTGGTGGCAATGAGGT+TGG | - | chr5_1:64262887-64262906 | None:intergenic | 45.0% |
| !! | AGAGAATGTTGGTGGCAATG+AGG | - | chr5_1:64262883-64262902 | None:intergenic | 45.0% |
| TCAATGAGTGTAGATGCCTC+TGG | - | chr5_1:64262836-64262855 | None:intergenic | 45.0% | |
| CATTGCATGAAAGGGTTGCA+AGG | - | chr5_1:64262517-64262536 | Msa0743750:CDS | 45.0% | |
| TGGCAATTATAAGCGAGCTG+AGG | - | chr5_1:64262616-64262635 | Msa0743750:CDS | 45.0% | |
| ATTCCAGCCAAAGCACGTAT+TGG | - | chr5_1:64262695-64262714 | None:intergenic | 45.0% | |
| !! | TTCAGAGCATTGCACCAAAG+AGG | + | chr5_1:64262731-64262750 | Msa0743760:CDS | 45.0% |
| CGAGTAAGATCTCACCTCTT+TGG | - | chr5_1:64262748-64262767 | None:intergenic | 45.0% | |
| GCATGAAAGAGTTGCAAGGT+TGG | + | chr5_1:64262796-64262815 | Msa0743760:CDS | 45.0% | |
| TGAAAGAGTTGCAAGGTTGG+AGG | + | chr5_1:64262799-64262818 | Msa0743760:CDS | 45.0% | |
| TCAATGAGTGTAGATGCCTC+TGG | + | chr5_1:64262836-64262855 | Msa0743760:CDS | 45.0% | |
| !! | AGAGAATGTTGGTGGCAATG+AGG | + | chr5_1:64262883-64262902 | Msa0743760:CDS | 45.0% |
| !! | AATGTTGGTGGCAATGAGGT+TGG | + | chr5_1:64262887-64262906 | Msa0743760:CDS | 45.0% |
| GAAGACGGTCATCACTCTTA+TGG | + | chr5_1:64262950-64262969 | Msa0743760:CDS | 45.0% | |
| CACTCTTATGGAGTAGTTGC+CGG | + | chr5_1:64262962-64262981 | Msa0743760:CDS | 45.0% | |
| TCTTTGCTCCCTTTGTTCAG+CGG | - | chr5_1:64262995-64263014 | None:intergenic | 45.0% | |
| GGAGTTGAAGGAAAAAAGGG+TGG | - | chr5_1:64263221-64263240 | None:intergenic | 45.0% | |
| ! | GAATAATGAGTTGGAGTGCG+AGG | - | chr5_1:64263333-64263352 | None:intergenic | 45.0% |
| CTGAGGGAATTGTTTGAGGA+AGG | - | chr5_1:64263386-64263405 | None:intergenic | 45.0% | |
| TGAGCTGAGGGAATTGTTTG+AGG | - | chr5_1:64263390-64263409 | None:intergenic | 45.0% | |
| GTGGATGGAGAGAATGTTGG+TGG | - | chr5_1:64262875-64262894 | None:intergenic | 50.0% | |
| GACGTGGATGGAGAGAATGT+TGG | - | chr5_1:64262872-64262891 | None:intergenic | 50.0% | |
| ATGAGTGTAGATGCCTCTGG+TGG | - | chr5_1:64262839-64262858 | None:intergenic | 50.0% | |
| TGAAAGGGTTGCAAGGTTGG+AGG | - | chr5_1:64262510-64262529 | Msa0743750:CDS | 50.0% | |
| GCATGAAAGGGTTGCAAGGT+TGG | - | chr5_1:64262513-64262532 | Msa0743750:CDS | 50.0% | |
| AGAGTTGCAAGGTTGGAGGA+TGG | + | chr5_1:64262803-64262822 | Msa0743760:CDS | 50.0% | |
| ATGAGTGTAGATGCCTCTGG+TGG | + | chr5_1:64262839-64262858 | Msa0743760:CDS | 50.0% | |
| GACGTGGATGGAGAGAATGT+TGG | + | chr5_1:64262872-64262891 | Msa0743760:CDS | 50.0% | |
| GTGGATGGAGAGAATGTTGG+TGG | + | chr5_1:64262875-64262894 | Msa0743760:CDS | 50.0% | |
| TTTGTTCAGCGGCTGAGTAC+CGG | - | chr5_1:64262984-64263003 | None:intergenic | 50.0% | |
| GTACTCAGCCGCTGAACAAA+GGG | + | chr5_1:64262984-64263003 | Msa0743760:CDS | 50.0% | |
| GTGGATGGAGAGAATGTTGG+TGG | - | chr5_1:64262875-64262894 | None:intergenic | 50.0% | |
| GACGTGGATGGAGAGAATGT+TGG | - | chr5_1:64262872-64262891 | None:intergenic | 50.0% | |
| ATGAGTGTAGATGCCTCTGG+TGG | - | chr5_1:64262839-64262858 | None:intergenic | 50.0% | |
| TGAAAGGGTTGCAAGGTTGG+AGG | - | chr5_1:64262510-64262529 | Msa0743750:CDS | 50.0% | |
| GCATGAAAGGGTTGCAAGGT+TGG | - | chr5_1:64262513-64262532 | Msa0743750:CDS | 50.0% | |
| AGAGTTGCAAGGTTGGAGGA+TGG | + | chr5_1:64262803-64262822 | Msa0743760:CDS | 50.0% | |
| ATGAGTGTAGATGCCTCTGG+TGG | + | chr5_1:64262839-64262858 | Msa0743760:CDS | 50.0% | |
| GACGTGGATGGAGAGAATGT+TGG | + | chr5_1:64262872-64262891 | Msa0743760:CDS | 50.0% | |
| GTGGATGGAGAGAATGTTGG+TGG | + | chr5_1:64262875-64262894 | Msa0743760:CDS | 50.0% | |
| TTTGTTCAGCGGCTGAGTAC+CGG | - | chr5_1:64262984-64263003 | None:intergenic | 50.0% | |
| GTACTCAGCCGCTGAACAAA+GGG | + | chr5_1:64262984-64263003 | Msa0743760:CDS | 50.0% | |
| GGTGGAAACGATGACGTGGA+TGG | - | chr5_1:64262860-64262879 | None:intergenic | 55.0% | |
| !! | TGGTGGTGGAAACGATGACG+TGG | - | chr5_1:64262856-64262875 | None:intergenic | 55.0% |
| GTCATCGTTTCCACCACCAG+AGG | + | chr5_1:64262454-64262473 | Msa0743760:CDS | 55.0% | |
| AGTGTAGATGCCTCTGGTGG+TGG | - | chr5_1:64262842-64262861 | None:intergenic | 55.0% | |
| AGGGTTGCAAGGTTGGAGGA+TGG | - | chr5_1:64262506-64262525 | Msa0743750:CDS | 55.0% | |
| CCAGCCAAAGCACGTATTGG+AGG | - | chr5_1:64262692-64262711 | None:intergenic | 55.0% | |
| CCTCCAATACGTGCTTTGGC+TGG | + | chr5_1:64262689-64262708 | Msa0743760:CDS | 55.0% | |
| AGTGTAGATGCCTCTGGTGG+TGG | + | chr5_1:64262842-64262861 | Msa0743760:CDS | 55.0% | |
| GTCATCGTTTCCACCACCAG+AGG | - | chr5_1:64262454-64262473 | Msa0743750:CDS | 55.0% | |
| !! | TGGTGGTGGAAACGATGACG+TGG | + | chr5_1:64262856-64262875 | Msa0743760:CDS | 55.0% |
| GGTGGAAACGATGACGTGGA+TGG | + | chr5_1:64262860-64262879 | Msa0743760:CDS | 55.0% | |
| GGTACTCAGCCGCTGAACAA+AGG | + | chr5_1:64262983-64263002 | Msa0743760:CDS | 55.0% | |
| ! | GAGTGGTGAGTTGGAGTGTG+AGG | - | chr5_1:64263164-64263183 | None:intergenic | 55.0% |
| GGTGGAAACGATGACGTGGA+TGG | - | chr5_1:64262860-64262879 | None:intergenic | 55.0% | |
| !! | TGGTGGTGGAAACGATGACG+TGG | - | chr5_1:64262856-64262875 | None:intergenic | 55.0% |
| GTCATCGTTTCCACCACCAG+AGG | + | chr5_1:64262454-64262473 | Msa0743760:CDS | 55.0% | |
| AGTGTAGATGCCTCTGGTGG+TGG | - | chr5_1:64262842-64262861 | None:intergenic | 55.0% | |
| AGGGTTGCAAGGTTGGAGGA+TGG | - | chr5_1:64262506-64262525 | Msa0743750:CDS | 55.0% | |
| CCAGCCAAAGCACGTATTGG+AGG | - | chr5_1:64262692-64262711 | None:intergenic | 55.0% | |
| CCTCCAATACGTGCTTTGGC+TGG | + | chr5_1:64262689-64262708 | Msa0743760:CDS | 55.0% | |
| AGTGTAGATGCCTCTGGTGG+TGG | + | chr5_1:64262842-64262861 | Msa0743760:CDS | 55.0% | |
| GTCATCGTTTCCACCACCAG+AGG | - | chr5_1:64262454-64262473 | Msa0743750:CDS | 55.0% | |
| !! | TGGTGGTGGAAACGATGACG+TGG | + | chr5_1:64262856-64262875 | Msa0743760:CDS | 55.0% |
| GGTGGAAACGATGACGTGGA+TGG | + | chr5_1:64262860-64262879 | Msa0743760:CDS | 55.0% | |
| GGTACTCAGCCGCTGAACAA+AGG | + | chr5_1:64262983-64263002 | Msa0743760:CDS | 55.0% | |
| ! | GAGTGGTGAGTTGGAGTGTG+AGG | - | chr5_1:64263164-64263183 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 64262410 | 64263426 | 64262410 | ID=Msa0743760;Name=Msa0743760 |
| chr5_1 | mRNA | 64262410 | 64263426 | 64262410 | ID=Msa0743760-mRNA-1;Parent=Msa0743760;Name=Msa0743760-mRNA-1;_AED=0.37;_eAED=0.59;_QI=0|-1|0|1|-1|1|1|0|338 |
| chr5_1 | exon | 64262410 | 64263426 | 64262410 | ID=Msa0743760-mRNA-1:exon:18982;Parent=Msa0743760-mRNA-1 |
| chr5_1 | CDS | 64262410 | 64263426 | 64262410 | ID=Msa0743760-mRNA-1:cds;Parent=Msa0743760-mRNA-1 |
| Gene Sequence |
| Protein sequence |
