Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0827270 | XP_024633082.1 | 94.203 | 345 | 20 | 0 | 1 | 345 | 1 | 345 | 0.0 | 650 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0827270 | sp|Q9LNP6|NFYA8_ARATH | 37.853 | 354 | 165 | 12 | 10 | 345 | 12 | 328 | 4.27e-51 | 175 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0827270 | A0A396JG16 | 94.203 | 345 | 20 | 0 | 1 | 345 | 1 | 345 | 0.0 | 650 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0827270 | TF | NF-YA |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0827270 | Msa1089340 | 0.803440 | 3.482102e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0827270 | MtrunA17_Chr2g0329811 | 94.203 | 345 | 20 | 0 | 1 | 345 | 1 | 345 | 0.0 | 650 |
| Msa0827270 | MtrunA17_Chr8g0343451 | 51.190 | 336 | 127 | 11 | 23 | 345 | 7 | 318 | 1.16e-83 | 256 |
| Msa0827270 | MtrunA17_Chr2g0300261 | 55.882 | 136 | 48 | 4 | 121 | 253 | 19 | 145 | 9.16e-41 | 143 |
| Msa0827270 | MtrunA17_Chr2g0292411 | 54.128 | 109 | 46 | 2 | 168 | 276 | 95 | 199 | 4.26e-33 | 122 |
| Msa0827270 | MtrunA17_Chr8g0352251 | 56.311 | 103 | 40 | 1 | 144 | 246 | 117 | 214 | 9.19e-31 | 118 |
| Msa0827270 | MtrunA17_Chr3g0103391 | 49.624 | 133 | 52 | 3 | 114 | 246 | 112 | 229 | 1.21e-30 | 118 |
| Msa0827270 | MtrunA17_Chr7g0267581 | 51.000 | 100 | 40 | 3 | 147 | 246 | 136 | 226 | 3.94e-24 | 100 |
| Msa0827270 | MtrunA17_Chr1g0177091 | 41.844 | 141 | 67 | 4 | 108 | 245 | 95 | 223 | 4.99e-24 | 100 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0827270 | AT1G17590.3 | 37.853 | 354 | 165 | 12 | 10 | 345 | 12 | 328 | 4.34e-52 | 175 |
| Msa0827270 | AT1G17590.2 | 37.853 | 354 | 165 | 12 | 10 | 345 | 12 | 328 | 4.34e-52 | 175 |
| Msa0827270 | AT1G17590.4 | 37.853 | 354 | 165 | 12 | 10 | 345 | 12 | 328 | 4.34e-52 | 175 |
| Msa0827270 | AT1G17590.1 | 37.853 | 354 | 165 | 12 | 10 | 345 | 12 | 328 | 4.34e-52 | 175 |
| Msa0827270 | AT1G72830.1 | 35.989 | 364 | 186 | 13 | 2 | 345 | 4 | 340 | 1.09e-48 | 167 |
| Msa0827270 | AT1G72830.2 | 35.890 | 365 | 186 | 14 | 2 | 345 | 4 | 341 | 6.93e-47 | 162 |
| Msa0827270 | AT1G54160.1 | 38.281 | 256 | 107 | 8 | 22 | 250 | 11 | 242 | 1.49e-39 | 142 |
| Msa0827270 | AT3G14020.2 | 37.690 | 329 | 134 | 16 | 20 | 318 | 13 | 300 | 2.19e-39 | 142 |
| Msa0827270 | AT3G14020.1 | 37.690 | 329 | 134 | 16 | 20 | 318 | 13 | 300 | 2.19e-39 | 142 |
| Msa0827270 | AT1G72830.3 | 33.884 | 363 | 170 | 13 | 2 | 345 | 4 | 315 | 6.08e-37 | 135 |
| Msa0827270 | AT1G30500.2 | 51.938 | 129 | 58 | 2 | 130 | 254 | 40 | 168 | 1.01e-36 | 131 |
| Msa0827270 | AT1G30500.1 | 52.381 | 126 | 58 | 2 | 130 | 254 | 40 | 164 | 2.02e-36 | 130 |
| Msa0827270 | AT2G34720.1 | 50.806 | 124 | 52 | 3 | 123 | 246 | 44 | 158 | 1.89e-32 | 120 |
| Msa0827270 | AT2G34720.2 | 52.941 | 119 | 47 | 3 | 128 | 246 | 14 | 123 | 1.55e-31 | 117 |
| Msa0827270 | AT2G34720.3 | 52.941 | 119 | 47 | 3 | 128 | 246 | 14 | 123 | 1.55e-31 | 117 |
| Msa0827270 | AT3G20910.1 | 45.926 | 135 | 59 | 4 | 117 | 251 | 111 | 231 | 2.12e-29 | 115 |
| Msa0827270 | AT5G12840.5 | 47.015 | 134 | 55 | 4 | 116 | 248 | 116 | 234 | 7.30e-29 | 112 |
| Msa0827270 | AT5G12840.3 | 47.015 | 134 | 55 | 4 | 116 | 248 | 116 | 234 | 7.30e-29 | 112 |
| Msa0827270 | AT5G12840.1 | 47.015 | 134 | 55 | 4 | 116 | 248 | 116 | 234 | 7.30e-29 | 112 |
| Msa0827270 | AT5G12840.4 | 47.015 | 134 | 55 | 4 | 116 | 248 | 115 | 233 | 7.38e-29 | 112 |
| Msa0827270 | AT5G12840.2 | 47.015 | 134 | 55 | 4 | 116 | 248 | 115 | 233 | 7.38e-29 | 112 |
| Msa0827270 | AT5G06510.4 | 48.214 | 112 | 46 | 4 | 149 | 259 | 9 | 109 | 4.75e-24 | 97.4 |
| Msa0827270 | AT5G06510.7 | 48.214 | 112 | 46 | 4 | 149 | 259 | 9 | 109 | 4.75e-24 | 97.4 |
| Msa0827270 | AT5G06510.1 | 47.788 | 113 | 47 | 4 | 149 | 260 | 104 | 205 | 1.21e-23 | 98.6 |
| Msa0827270 | AT5G06510.5 | 47.788 | 113 | 47 | 4 | 149 | 260 | 104 | 205 | 1.21e-23 | 98.6 |
| Msa0827270 | AT5G06510.2 | 47.788 | 113 | 47 | 4 | 149 | 260 | 104 | 205 | 1.21e-23 | 98.6 |
| Msa0827270 | AT5G06510.6 | 47.788 | 113 | 47 | 4 | 149 | 260 | 104 | 205 | 1.21e-23 | 98.6 |
| Msa0827270 | AT5G06510.3 | 47.788 | 113 | 47 | 4 | 149 | 260 | 55 | 156 | 2.25e-23 | 97.1 |
| Msa0827270 | AT3G05690.1 | 48.544 | 103 | 39 | 4 | 147 | 245 | 107 | 199 | 7.48e-20 | 89.0 |
| Msa0827270 | AT3G05690.2 | 48.544 | 103 | 39 | 4 | 147 | 245 | 144 | 236 | 1.03e-19 | 89.0 |
Find 111 sgRNAs with CRISPR-Local
Find 250 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGCTTTGAATTCACATATA+TGG | 0.180422 | 5_3:-68425514 | None:intergenic |
| CACTTTGAAGCTCAAACTTT+TGG | 0.192638 | 5_3:-68423827 | None:intergenic |
| AAGAGAGACACCTTGGAAAT+TGG | 0.211241 | 5_3:-68422701 | None:intergenic |
| TTCAACCTGATCAAGCATTT+TGG | 0.248710 | 5_3:-68425869 | None:intergenic |
| GCGAATCAAGCTTTGATTCT+TGG | 0.254868 | 5_3:-68425780 | None:intergenic |
| TTCATATGGCCAACAATATA+AGG | 0.305273 | 5_3:+68424950 | Msa0827270:CDS |
| TATAGCTGGTGGAAACATTT+TGG | 0.306979 | 5_3:-68425813 | None:intergenic |
| GAGAACCGAGGAGAACAATA+TGG | 0.321909 | 5_3:+68424709 | Msa0827270:CDS |
| AAATTCTGACCAGCTTCTTC+AGG | 0.334629 | 5_3:+68425431 | Msa0827270:CDS |
| CTCATCGAATCATCATCTAT+TGG | 0.336945 | 5_3:+68424737 | Msa0827270:CDS |
| TGCTTTGAATTCACATATAT+GGG | 0.338735 | 5_3:-68425513 | None:intergenic |
| TTCCAGCATTGTTCTTCTAC+TGG | 0.343547 | 5_3:+68424674 | Msa0827270:CDS |
| GGAGGATGAACGGTGAGATT+TGG | 0.353502 | 5_3:-68424764 | None:intergenic |
| AATTCCCTTGCCATCTGATA+TGG | 0.360890 | 5_3:+68425482 | Msa0827270:CDS |
| GCTTCTTCAGGGCCAGCTAA+TGG | 0.362306 | 5_3:+68425443 | Msa0827270:CDS |
| GGCCTACTTTCTGCTTCATA+TGG | 0.362322 | 5_3:+68424936 | Msa0827270:CDS |
| CACCGTTCATCCTCCACTAA+TGG | 0.364359 | 5_3:+68424772 | Msa0827270:CDS |
| TATTGTGTAGCCTATTGTTT+AGG | 0.371376 | 5_3:+68426254 | Msa0827270:three_prime_UTR |
| TATACTTGTTTGAATTTGAA+TGG | 0.374199 | 5_3:+68425832 | Msa0827270:CDS |
| TATCAGATGGCAAGGGAATT+CGG | 0.376992 | 5_3:-68425479 | None:intergenic |
| TATATCTGCTTACAAGTGAT+TGG | 0.392437 | 5_3:-68424802 | None:intergenic |
| TACAAATTACCTTATATTGT+TGG | 0.397767 | 5_3:-68424959 | None:intergenic |
| AGAGAGACACCTTGGAAATT+GGG | 0.399599 | 5_3:-68422700 | None:intergenic |
| TCATCGAATCATCATCTATT+GGG | 0.410536 | 5_3:+68424738 | Msa0827270:CDS |
| CAGAAGCAGTTTCCATTAGC+TGG | 0.410914 | 5_3:-68425455 | None:intergenic |
| TGTCGGGACTCGTGAAGATA+TGG | 0.413042 | 5_3:-68425697 | None:intergenic |
| GTCGTTGGATTGAGATTGGC+AGG | 0.414168 | 5_3:+68426449 | Msa0827270:three_prime_UTR |
| AGCACATAACAAACTCATAA+AGG | 0.430383 | 5_3:+68425581 | Msa0827270:CDS |
| CGTAGTCGTTGGATTGAGAT+TGG | 0.431388 | 5_3:+68426445 | Msa0827270:three_prime_UTR |
| TTGATTTGATGTATATTGTA+TGG | 0.437662 | 5_3:+68426397 | Msa0827270:three_prime_UTR |
| GACTTCCCAATGGTAGAGAT+TGG | 0.446162 | 5_3:-68426163 | None:intergenic |
| TGTTCTCCAATCTCTACCAT+TGG | 0.450928 | 5_3:+68426157 | Msa0827270:three_prime_UTR |
| GAGACCAAGTACAACGCAAC+GGG | 0.451752 | 5_3:+68422428 | None:intergenic |
| TGAAATGTTTCAGCAGCAAC+AGG | 0.453392 | 5_3:+68425939 | Msa0827270:CDS |
| ATGTCACATACGGATCTCAT+AGG | 0.460134 | 5_3:+68425914 | Msa0827270:CDS |
| TACCATTGGGAAGTCATCCT+TGG | 0.465460 | 5_3:+68426171 | Msa0827270:three_prime_UTR |
| TTCCTTCCAGTCTGAGAAGA+AGG | 0.470197 | 5_3:-68425988 | None:intergenic |
| AATTCTGACCAGCTTCTTCA+GGG | 0.474643 | 5_3:+68425432 | Msa0827270:CDS |
| GTTCTCCAATCTCTACCATT+GGG | 0.476792 | 5_3:+68426158 | Msa0827270:three_prime_UTR |
| AGCAACAGGAGTTAGAGTTC+AGG | 0.485902 | 5_3:+68425953 | Msa0827270:CDS |
| TGATTTGATGTATATTGTAT+GGG | 0.488338 | 5_3:+68426398 | Msa0827270:three_prime_UTR |
| CAAATTCAAACAAGTATAGC+TGG | 0.488784 | 5_3:-68425827 | None:intergenic |
| GAATTTGAATGGAAATATGT+CGG | 0.489962 | 5_3:+68425843 | Msa0827270:CDS |
| GGAATCCAAAATGCTTGATC+AGG | 0.490416 | 5_3:+68425864 | Msa0827270:CDS |
| AAACTGTGCATGTGTTTAGC+GGG | 0.495473 | 5_3:-68422659 | None:intergenic |
| CTTTAATGCATGTACATGTC+GGG | 0.500813 | 5_3:-68425713 | None:intergenic |
| TCGACTGGCTCATCACAATC+AGG | 0.502357 | 5_3:+68423928 | Msa0827270:CDS |
| GAAAGTAGGCCATTGTAGCC+TGG | 0.505229 | 5_3:-68424924 | None:intergenic |
| AACCAGTAGAAGAACAATGC+TGG | 0.515161 | 5_3:-68424676 | None:intergenic |
| TATGAGGCGAAGACAGTGTC+GGG | 0.515554 | 5_3:+68425548 | Msa0827270:CDS |
| GCACTCCACTATGCTGATCC+AGG | 0.517924 | 5_3:+68424906 | Msa0827270:CDS |
| TCAGAAGATCTTCCCCATGA+TGG | 0.517971 | 5_3:-68423778 | None:intergenic |
| GATTGGTTGTGATCCATTAG+TGG | 0.519094 | 5_3:-68424785 | None:intergenic |
| AGCAGTACCATGCTATTATG+AGG | 0.519657 | 5_3:+68425532 | Msa0827270:CDS |
| TCTTTAATGCATGTACATGT+CGG | 0.521057 | 5_3:-68425714 | None:intergenic |
| TGGAGAACACAATCAAATAG+TGG | 0.522439 | 5_3:-68426143 | None:intergenic |
| AGAACCGAGGAGAACAATAT+GGG | 0.525995 | 5_3:+68424710 | Msa0827270:CDS |
| AACTCAGTGCTTTACTGTTG+TGG | 0.539967 | 5_3:-68423870 | None:intergenic |
| TAGATTGACATAAGAGTGGT+GGG | 0.542716 | 5_3:-68422568 | None:intergenic |
| AGCATTGAGAAAACGGCCAC+CGG | 0.542799 | 5_3:-68425749 | None:intergenic |
| TGTGACTCTATCGTAGTCGT+TGG | 0.542828 | 5_3:+68426434 | Msa0827270:three_prime_UTR |
| ACATCCCATATTGTTCTCCT+CGG | 0.546379 | 5_3:-68424714 | None:intergenic |
| TGGATTGAGATTGGCAGGGA+CGG | 0.550298 | 5_3:+68426454 | Msa0827270:three_prime_UTR |
| CAAAAGTTTGAGCTTCAAAG+TGG | 0.551748 | 5_3:+68423828 | Msa0827270:CDS |
| TTCCGCCATATCAGATGGCA+AGG | 0.552797 | 5_3:-68425487 | None:intergenic |
| TTAGCTGGCCCTGAAGAAGC+TGG | 0.554264 | 5_3:-68425440 | None:intergenic |
| GTAGAAGAACAATGCTGGAA+AGG | 0.555226 | 5_3:-68424671 | None:intergenic |
| TTAAAGAGAGCTAGAGGTGC+CGG | 0.556911 | 5_3:+68425730 | Msa0827270:CDS |
| CTAAATCCACCCAATTTCCA+AGG | 0.559695 | 5_3:+68422691 | Msa0827270:five_prime_UTR |
| TCATCTTCAACTCAATCGAC+TGG | 0.564458 | 5_3:+68423913 | Msa0827270:CDS |
| ACCCTTCTTCTCAGACTGGA+AGG | 0.577435 | 5_3:+68425986 | Msa0827270:CDS |
| CTCACATGCGGACGGATAGT+CGG | 0.579968 | 5_3:-68426056 | None:intergenic |
| TGTAGCCTGGATCAGCATAG+TGG | 0.581932 | 5_3:-68424911 | None:intergenic |
| GATGCTTCTGATGTCACATA+CGG | 0.584773 | 5_3:+68425904 | Msa0827270:CDS |
| TATGCTGATCCAGGCTACAA+TGG | 0.586886 | 5_3:+68424915 | Msa0827270:CDS |
| GGTTCTTCCGCCATATCAGA+TGG | 0.587888 | 5_3:-68425492 | None:intergenic |
| GAAACTGTGCATGTGTTTAG+CGG | 0.595023 | 5_3:-68422660 | None:intergenic |
| GAGACACCTTGGAAATTGGG+TGG | 0.604945 | 5_3:-68422697 | None:intergenic |
| TCCCTTGCCATCTGATATGG+CGG | 0.605293 | 5_3:+68425485 | Msa0827270:CDS |
| AGTTACCCTTCTTCTCAGAC+TGG | 0.606122 | 5_3:+68425982 | Msa0827270:CDS |
| ATTCAAACAAGTATAGCTGG+TGG | 0.610080 | 5_3:-68425824 | None:intergenic |
| GGCCATATGAAGCAGAAAGT+AGG | 0.615452 | 5_3:-68424938 | None:intergenic |
| TACAAAGCTGACAAGAATGT+TGG | 0.616527 | 5_3:+68426021 | Msa0827270:CDS |
| ATGATGGACATCCGAAAACA+CGG | 0.617323 | 5_3:-68423762 | None:intergenic |
| GATTTGATGTATATTGTATG+GGG | 0.618950 | 5_3:+68426399 | Msa0827270:three_prime_UTR |
| TTATGAGGCGAAGACAGTGT+CGG | 0.619331 | 5_3:+68425547 | Msa0827270:CDS |
| ATAGATTGACATAAGAGTGG+TGG | 0.625247 | 5_3:-68422569 | None:intergenic |
| ACATAAGTAAATATGAGCCA+AGG | 0.627513 | 5_3:-68426188 | None:intergenic |
| ATCCATTAGTGGAGGATGAA+CGG | 0.629213 | 5_3:-68424774 | None:intergenic |
| TCCTTCCAGTCTGAGAAGAA+GGG | 0.630698 | 5_3:-68425987 | None:intergenic |
| TTACTGTTGTGGCATCCTTG+TGG | 0.631295 | 5_3:-68423859 | None:intergenic |
| AGAGACCAAGTACAACGCAA+CGG | 0.633643 | 5_3:+68422427 | None:intergenic |
| ACAAGTCTCTCACATGCGGA+CGG | 0.640777 | 5_3:-68426064 | None:intergenic |
| GTCTTCGCCTCATAATAGCA+TGG | 0.641090 | 5_3:-68425539 | None:intergenic |
| GTCATAGATTGACATAAGAG+TGG | 0.646950 | 5_3:-68422572 | None:intergenic |
| CATGCATTAAAGAGAGCTAG+AGG | 0.647089 | 5_3:+68425724 | Msa0827270:CDS |
| TTCTACAAGTCTCTCACATG+CGG | 0.648923 | 5_3:-68426068 | None:intergenic |
| TGTAGAACACATCATTGTGG+TGG | 0.651381 | 5_3:+68426084 | Msa0827270:three_prime_UTR |
| AACTGTGCATGTGTTTAGCG+GGG | 0.651614 | 5_3:-68422658 | None:intergenic |
| ACAACAAATAAAGTCACACT+AGG | 0.653661 | 5_3:-68426335 | None:intergenic |
| AGCCAAGGATGACTTCCCAA+TGG | 0.667631 | 5_3:-68426173 | None:intergenic |
| TGGACATCCGAAAACACGGT+GGG | 0.667728 | 5_3:-68423758 | None:intergenic |
| TCGTTGGATTGAGATTGGCA+GGG | 0.677474 | 5_3:+68426450 | Msa0827270:three_prime_UTR |
| TGGTTGTGATCCATTAGTGG+AGG | 0.677882 | 5_3:-68424782 | None:intergenic |
| TCCGCCATATCAGATGGCAA+GGG | 0.679431 | 5_3:-68425486 | None:intergenic |
| AAGAGAGCTAGAGGTGCCGG+TGG | 0.680129 | 5_3:+68425733 | Msa0827270:CDS |
| TTCAACATTTAAGAGAACCG+AGG | 0.691304 | 5_3:+68424697 | Msa0827270:CDS |
| AGATTGACATAAGAGTGGTG+GGG | 0.695152 | 5_3:-68422567 | None:intergenic |
| AAAGTGGAAGCTCTACCACA+AGG | 0.704797 | 5_3:+68423844 | Msa0827270:CDS |
| ATGGACATCCGAAAACACGG+TGG | 0.721858 | 5_3:-68423759 | None:intergenic |
| ACTTGTAGAACACATCATTG+TGG | 0.726366 | 5_3:+68426081 | Msa0827270:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTTCATTTTATTTGTA+AGG | + | chr5_3:68423665-68423684 | Msa0827270:intron | 10.0% |
| !! | TAAGAAAAACTTAAATTATA+TGG | - | chr5_3:68424342-68424361 | None:intergenic | 10.0% |
| !!! | TTAAGTTTTTCTTATAAAAT+TGG | + | chr5_3:68424348-68424367 | Msa0827270:intron | 10.0% |
| !!! | TTTTTTATCTCTTTTAATTA+CGG | + | chr5_3:68424989-68425008 | Msa0827270:intron | 10.0% |
| !! | AGAAAAAAGACAATTTAATT+TGG | - | chr5_3:68423037-68423056 | None:intergenic | 15.0% |
| !!! | TCTATTTCTTAAATTATTAC+TGG | + | chr5_3:68424164-68424183 | Msa0827270:intron | 15.0% |
| !!! | TATTTACAAGTTTTTTTTGA+AGG | - | chr5_3:68425115-68425134 | None:intergenic | 15.0% |
| !!! | AATTATTTTGATTTCTTATG+AGG | + | chr5_3:68425324-68425343 | Msa0827270:intron | 15.0% |
| !!! | CAATGATGAAGTTTTTATAT+TGG | + | chr5_3:68422505-68422524 | Msa0827270:five_prime_UTR | 20.0% |
| !!! | AAAAGTGTTAAACTTCAATT+GGG | + | chr5_3:68422935-68422954 | Msa0827270:intron | 20.0% |
| !! | AATTCAATTGCAAAATAAAG+AGG | - | chr5_3:68423209-68423228 | None:intergenic | 20.0% |
| !! | TTATATTGATATTACCAAAC+TGG | - | chr5_3:68423513-68423532 | None:intergenic | 20.0% |
| !!! | TAATTCAAAATACGAACTTT+TGG | - | chr5_3:68423575-68423594 | None:intergenic | 20.0% |
| !!! | CATTTTATTTGTAAGGTAAA+TGG | + | chr5_3:68423672-68423691 | Msa0827270:intron | 20.0% |
| !!! | TTCTCATTTTGTTATGTTAT+TGG | + | chr5_3:68424002-68424021 | Msa0827270:intron | 20.0% |
| !! | TATATATATCTATGTTCTAG+TGG | + | chr5_3:68424821-68424840 | Msa0827270:intron | 20.0% |
| !! | TACAAATTACCTTATATTGT+TGG | - | chr5_3:68424962-68424981 | None:intergenic | 20.0% |
| !! | AAAACTTGTAAATAGATGTT+AGG | + | chr5_3:68425121-68425140 | Msa0827270:intron | 20.0% |
| !! | TATACTTGTTTGAATTTGAA+TGG | + | chr5_3:68425832-68425851 | Msa0827270:CDS | 20.0% |
| !!! | TTGATTTGATGTATATTGTA+TGG | + | chr5_3:68426397-68426416 | Msa0827270:three_prime_UTR | 20.0% |
| !! | TGATTTGATGTATATTGTAT+GGG | + | chr5_3:68426398-68426417 | Msa0827270:three_prime_UTR | 20.0% |
| !! | GTCATGAAATTTCAAGTAAA+GGG | - | chr5_3:68422780-68422799 | None:intergenic | 25.0% |
| !! | TGTCATGAAATTTCAAGTAA+AGG | - | chr5_3:68422781-68422800 | None:intergenic | 25.0% |
| !!! | GAATTTTTAGCTTAAGATGA+TGG | + | chr5_3:68422825-68422844 | Msa0827270:intron | 25.0% |
| !!! | GAAAAGTGTTAAACTTCAAT+TGG | + | chr5_3:68422934-68422953 | Msa0827270:intron | 25.0% |
| ! | TACAAATGAATGAAAACCTA+AGG | - | chr5_3:68422969-68422988 | None:intergenic | 25.0% |
| ! | AGACAATGAAATGTTTAAAC+AGG | - | chr5_3:68423140-68423159 | None:intergenic | 25.0% |
| !!! | ATAGTTTCTGGTATGAATAA+TGG | + | chr5_3:68423278-68423297 | Msa0827270:intron | 25.0% |
| ! | GAAAAGTCTCTATCATTAAT+TGG | - | chr5_3:68423370-68423389 | None:intergenic | 25.0% |
| ! | CAATATAATGTTCCTTTATG+TGG | + | chr5_3:68423525-68423544 | Msa0827270:intron | 25.0% |
| ! | CTATATATTGGTAAAAGCTA+TGG | + | chr5_3:68424312-68424331 | Msa0827270:intron | 25.0% |
| ! | AAATTGGAATTTGTCTTAGA+TGG | + | chr5_3:68424364-68424383 | Msa0827270:intron | 25.0% |
| ! | TGCTGAATTACTTAATTTAG+TGG | + | chr5_3:68424594-68424613 | Msa0827270:intron | 25.0% |
| ! | AGTGCAAATACTAATCAAAT+GGG | - | chr5_3:68424629-68424648 | None:intergenic | 25.0% |
| !! | AGACACTTTTCTCAAAATTT+TGG | + | chr5_3:68424867-68424886 | Msa0827270:intron | 25.0% |
| !! | GACACTTTTCTCAAAATTTT+GGG | + | chr5_3:68424868-68424887 | Msa0827270:intron | 25.0% |
| ! | TAATATCAATATCAACATGC+TGG | - | chr5_3:68425039-68425058 | None:intergenic | 25.0% |
| !! | TCAATTTTCAGTCATAACTA+TGG | - | chr5_3:68425372-68425391 | None:intergenic | 25.0% |
| !! | TGCTTTGAATTCACATATAT+GGG | - | chr5_3:68425516-68425535 | None:intergenic | 25.0% |
| ! | GAATTTGAATGGAAATATGT+CGG | + | chr5_3:68425843-68425862 | Msa0827270:CDS | 25.0% |
| ! | GATTTGATGTATATTGTATG+GGG | + | chr5_3:68426399-68426418 | Msa0827270:three_prime_UTR | 25.0% |
| AAAATAAAAGAGAGACACCT+TGG | - | chr5_3:68422711-68422730 | None:intergenic | 30.0% | |
| CTGTTCTGTTTGTATATTCT+TGG | + | chr5_3:68422874-68422893 | Msa0827270:intron | 30.0% | |
| TATAGTAAGCTTTCCATTTC+AGG | + | chr5_3:68422908-68422927 | Msa0827270:intron | 30.0% | |
| ACACATGGAATAAACTCAAT+TGG | - | chr5_3:68423000-68423019 | None:intergenic | 30.0% | |
| GTATATAAGCAAAAGACACA+TGG | - | chr5_3:68423015-68423034 | None:intergenic | 30.0% | |
| !!! | TACCTTTTTTGCACCAATAA+TGG | + | chr5_3:68423065-68423084 | Msa0827270:intron | 30.0% |
| TTCCATTATTGGTGCAAAAA+AGG | - | chr5_3:68423070-68423089 | None:intergenic | 30.0% | |
| ! | CCTTCTCTTATTTCCATTAT+TGG | - | chr5_3:68423081-68423100 | None:intergenic | 30.0% |
| ! | CCAATAATGGAAATAAGAGA+AGG | + | chr5_3:68423078-68423097 | Msa0827270:intron | 30.0% |
| !! | AAAGTACTGCATATAGTTTC+TGG | + | chr5_3:68423266-68423285 | Msa0827270:intron | 30.0% |
| ! | TTTCTGGTATGAATAATGGA+GGG | + | chr5_3:68423282-68423301 | Msa0827270:intron | 30.0% |
| AATTGGAAGAACTTTCATAG+AGG | - | chr5_3:68423353-68423372 | None:intergenic | 30.0% | |
| ! | AGACTTTTCTTTTTATGACG+AGG | + | chr5_3:68423381-68423400 | Msa0827270:intron | 30.0% |
| TATTTCTTTCTTGTCCAGTT+TGG | + | chr5_3:68423496-68423515 | Msa0827270:intron | 30.0% | |
| AACATAAGCATACCACATAA+AGG | - | chr5_3:68423540-68423559 | None:intergenic | 30.0% | |
| ! | GAGTTTTCAATTTCAAGAAC+AGG | + | chr5_3:68423888-68423907 | Msa0827270:CDS | 30.0% |
| TACTACTGCAGTTTCTTAAT+AGG | - | chr5_3:68424039-68424058 | None:intergenic | 30.0% | |
| !! | ACACCTTTAATTTGAAGTGT+CGG | - | chr5_3:68424080-68424099 | None:intergenic | 30.0% |
| !! | TATAAATTGACTCGCTTATG+AGG | - | chr5_3:68424452-68424471 | None:intergenic | 30.0% |
| ! | ATCGTTGATGGGAAAATAAA+TGG | + | chr5_3:68424494-68424513 | Msa0827270:intron | 30.0% |
| TTGATGGGAAAATAAATGGT+TGG | + | chr5_3:68424498-68424517 | Msa0827270:intron | 30.0% | |
| TGCAAATACTAATCAAATGG+GGG | - | chr5_3:68424627-68424646 | None:intergenic | 30.0% | |
| GTGCAAATACTAATCAAATG+GGG | - | chr5_3:68424628-68424647 | None:intergenic | 30.0% | |
| CAGTGCAAATACTAATCAAA+TGG | - | chr5_3:68424630-68424649 | None:intergenic | 30.0% | |
| TCATCGAATCATCATCTATT+GGG | + | chr5_3:68424738-68424757 | Msa0827270:CDS | 30.0% | |
| TATATCTGCTTACAAGTGAT+TGG | - | chr5_3:68424805-68424824 | None:intergenic | 30.0% | |
| TATATCTATGTTCTAGTGGA+TGG | + | chr5_3:68424825-68424844 | Msa0827270:intron | 30.0% | |
| !!! | TTCTCAAAATTTTGGGTTTC+AGG | + | chr5_3:68424875-68424894 | Msa0827270:intron | 30.0% |
| TTCATATGGCCAACAATATA+AGG | + | chr5_3:68424950-68424969 | Msa0827270:CDS | 30.0% | |
| CCATTTAGAGGAACAAATTA+AGG | - | chr5_3:68425180-68425199 | None:intergenic | 30.0% | |
| !! | CCTTAATTTGTTCCTCTAAA+TGG | + | chr5_3:68425177-68425196 | Msa0827270:intron | 30.0% |
| ATGATTTATGAAAGCCGTAA+AGG | - | chr5_3:68425240-68425259 | None:intergenic | 30.0% | |
| ! | CTGCTTTGAATTCACATATA+TGG | - | chr5_3:68425517-68425536 | None:intergenic | 30.0% |
| AGCACATAACAAACTCATAA+AGG | + | chr5_3:68425581-68425600 | Msa0827270:CDS | 30.0% | |
| TCTTTAATGCATGTACATGT+CGG | - | chr5_3:68425717-68425736 | None:intergenic | 30.0% | |
| !! | GCTTTTTAGCATTGAGAAAA+CGG | - | chr5_3:68425759-68425778 | None:intergenic | 30.0% |
| CAAATTCAAACAAGTATAGC+TGG | - | chr5_3:68425830-68425849 | None:intergenic | 30.0% | |
| ACATAAGTAAATATGAGCCA+AGG | - | chr5_3:68426191-68426210 | None:intergenic | 30.0% | |
| TATTGTGTAGCCTATTGTTT+AGG | + | chr5_3:68426254-68426273 | Msa0827270:three_prime_UTR | 30.0% | |
| !!! | GTGTTTTTTGCCTAAACAAT+AGG | - | chr5_3:68426267-68426286 | None:intergenic | 30.0% |
| ! | TGCTTTTCTAAGTTTAATGC+TGG | + | chr5_3:68426310-68426329 | Msa0827270:three_prime_UTR | 30.0% |
| ACAACAAATAAAGTCACACT+AGG | - | chr5_3:68426338-68426357 | None:intergenic | 30.0% | |
| ATTCAAAAAACTCGGTTCTT+CGG | - | chr5_3:68426366-68426385 | None:intergenic | 30.0% | |
| TGTGTCGAATTCAAAAAACT+CGG | - | chr5_3:68426374-68426393 | None:intergenic | 30.0% | |
| TAGATTGACATAAGAGTGGT+GGG | - | chr5_3:68422571-68422590 | None:intergenic | 35.0% | |
| ATAGATTGACATAAGAGTGG+TGG | - | chr5_3:68422572-68422591 | None:intergenic | 35.0% | |
| GTCATAGATTGACATAAGAG+TGG | - | chr5_3:68422575-68422594 | None:intergenic | 35.0% | |
| ! | AACACTTTTCCTACCTGAAA+TGG | - | chr5_3:68422924-68422943 | None:intergenic | 35.0% |
| CAATTGGGAAAGAATTCCTT+AGG | + | chr5_3:68422950-68422969 | Msa0827270:intron | 35.0% | |
| !! | GTTTCTGGTATGAATAATGG+AGG | + | chr5_3:68423281-68423300 | Msa0827270:intron | 35.0% |
| GAAGAACTTTCATAGAGGAT+TGG | - | chr5_3:68423348-68423367 | None:intergenic | 35.0% | |
| TTATGACGAGGAATCAAACT+CGG | + | chr5_3:68423393-68423412 | Msa0827270:intron | 35.0% | |
| TAAGTGATTGTTGTAAACCC+GGG | - | chr5_3:68423422-68423441 | None:intergenic | 35.0% | |
| GTAAGTGATTGTTGTAAACC+CGG | - | chr5_3:68423423-68423442 | None:intergenic | 35.0% | |
| AAGATACTGCAACGATAATC+TGG | + | chr5_3:68423594-68423613 | Msa0827270:intron | 35.0% | |
| !!! | ATCTAGCTACAGCTTTTTCA+TGG | - | chr5_3:68423627-68423646 | None:intergenic | 35.0% |
| AAAAAGCTGTAGCTAGATCT+AGG | + | chr5_3:68423629-68423648 | Msa0827270:intron | 35.0% | |
| ! | TTTTGGACATGGATGTTTGT+TGG | - | chr5_3:68423813-68423832 | None:intergenic | 35.0% |
| !!! | CACTTTGAAGCTCAAACTTT+TGG | - | chr5_3:68423830-68423849 | None:intergenic | 35.0% |
| CAAAAGTTTGAGCTTCAAAG+TGG | + | chr5_3:68423828-68423847 | Msa0827270:CDS | 35.0% | |
| !! | CTTCAAATTAAAGGTGTCTC+CGG | + | chr5_3:68424083-68424102 | Msa0827270:intron | 35.0% |
| TCGAATGTAACTATGTGAGT+CGG | - | chr5_3:68424139-68424158 | None:intergenic | 35.0% | |
| ! | TCTGTTCTTCATAGCTTTTC+TGG | + | chr5_3:68424216-68424235 | Msa0827270:intron | 35.0% |
| ATTATGTAAACCTACCTCCT+TGG | + | chr5_3:68424279-68424298 | Msa0827270:intron | 35.0% | |
| AGTTATGAAGTAACGTGTCA+AGG | - | chr5_3:68424411-68424430 | None:intergenic | 35.0% | |
| CAAGATATCTCATCGTTGAT+GGG | + | chr5_3:68424483-68424502 | Msa0827270:intron | 35.0% | |
| ACACATACACAGCAGATAAT+GGG | - | chr5_3:68424536-68424555 | None:intergenic | 35.0% | |
| TACACATACACAGCAGATAA+TGG | - | chr5_3:68424537-68424556 | None:intergenic | 35.0% | |
| GATTAGTATTTGCACTGTGT+TGG | + | chr5_3:68424633-68424652 | Msa0827270:intron | 35.0% | |
| TTCAACATTTAAGAGAACCG+AGG | + | chr5_3:68424697-68424716 | Msa0827270:CDS | 35.0% | |
| CTCATCGAATCATCATCTAT+TGG | + | chr5_3:68424737-68424756 | Msa0827270:CDS | 35.0% | |
| TGATTGAACAGTCCATTTAG+AGG | - | chr5_3:68425192-68425211 | None:intergenic | 35.0% | |
| ! | TTGCATATATTTGAGACCAG+AGG | + | chr5_3:68425283-68425302 | Msa0827270:intron | 35.0% |
| ! | TGCATATATTTGAGACCAGA+GGG | + | chr5_3:68425284-68425303 | Msa0827270:intron | 35.0% |
| AACAATATTGTTAGTGCGGT+TGG | - | chr5_3:68425671-68425690 | None:intergenic | 35.0% | |
| GCACAACAATATTGTTAGTG+CGG | - | chr5_3:68425675-68425694 | None:intergenic | 35.0% | |
| CTTTAATGCATGTACATGTC+GGG | - | chr5_3:68425716-68425735 | None:intergenic | 35.0% | |
| !! | GAAACATTTTGGTCATGGTT+TGG | - | chr5_3:68425805-68425824 | None:intergenic | 35.0% |
| ! | TATAGCTGGTGGAAACATTT+TGG | - | chr5_3:68425816-68425835 | None:intergenic | 35.0% |
| ATTCAAACAAGTATAGCTGG+TGG | - | chr5_3:68425827-68425846 | None:intergenic | 35.0% | |
| ! | TTCAACCTGATCAAGCATTT+TGG | - | chr5_3:68425872-68425891 | None:intergenic | 35.0% |
| TACAAAGCTGACAAGAATGT+TGG | + | chr5_3:68426021-68426040 | Msa0827270:CDS | 35.0% | |
| ACTTGTAGAACACATCATTG+TGG | + | chr5_3:68426081-68426100 | Msa0827270:three_prime_UTR | 35.0% | |
| TGGAGAACACAATCAAATAG+TGG | - | chr5_3:68426146-68426165 | None:intergenic | 35.0% | |
| AGATTGACATAAGAGTGGTG+GGG | - | chr5_3:68422570-68422589 | None:intergenic | 40.0% | |
| AAACTGTGCATGTGTTTAGC+GGG | - | chr5_3:68422662-68422681 | None:intergenic | 40.0% | |
| GAAACTGTGCATGTGTTTAG+CGG | - | chr5_3:68422663-68422682 | None:intergenic | 40.0% | |
| CTAAATCCACCCAATTTCCA+AGG | + | chr5_3:68422691-68422710 | Msa0827270:five_prime_UTR | 40.0% | |
| AGAGAGACACCTTGGAAATT+GGG | - | chr5_3:68422703-68422722 | None:intergenic | 40.0% | |
| AAGAGAGACACCTTGGAAAT+TGG | - | chr5_3:68422704-68422723 | None:intergenic | 40.0% | |
| ! | GTAAGCTTTCCATTTCAGGT+AGG | + | chr5_3:68422912-68422931 | Msa0827270:intron | 40.0% |
| TGGATTAACATTTCAGCCCT+TGG | - | chr5_3:68423317-68423336 | None:intergenic | 40.0% | |
| AGGGCTGAAATGTTAATCCA+TGG | + | chr5_3:68423317-68423336 | Msa0827270:intron | 40.0% | |
| AAGTGATTGTTGTAAACCCG+GGG | - | chr5_3:68423421-68423440 | None:intergenic | 40.0% | |
| !! | ATGATGGACATCCGAAAACA+CGG | - | chr5_3:68423765-68423784 | None:intergenic | 40.0% |
| ! | TGTTTTCGGATGTCCATCAT+GGG | + | chr5_3:68423765-68423784 | Msa0827270:CDS | 40.0% |
| ! | GAAGCTCAAACTTTTGGACA+TGG | - | chr5_3:68423824-68423843 | None:intergenic | 40.0% |
| AACTCAGTGCTTTACTGTTG+TGG | - | chr5_3:68423873-68423892 | None:intergenic | 40.0% | |
| TCATCTTCAACTCAATCGAC+TGG | + | chr5_3:68423913-68423932 | Msa0827270:CDS | 40.0% | |
| AAAACACCAGTTGACAAGCA+CGG | - | chr5_3:68423984-68424003 | None:intergenic | 40.0% | |
| ! | GCACCGACACTTCAAATTAA+AGG | + | chr5_3:68424074-68424093 | Msa0827270:intron | 40.0% |
| AGACATCCATACACAGACAA+CGG | - | chr5_3:68424199-68424218 | None:intergenic | 40.0% | |
| TATATAGCCAGTGCTAACCA+AGG | - | chr5_3:68424299-68424318 | None:intergenic | 40.0% | |
| !! | GGTTAGCACTGGCTATATAT+TGG | + | chr5_3:68424300-68424319 | Msa0827270:intron | 40.0% |
| GCAAGATATCTCATCGTTGA+TGG | + | chr5_3:68424482-68424501 | Msa0827270:intron | 40.0% | |
| TTTGCACTGTGTTGGATACT+AGG | + | chr5_3:68424641-68424660 | Msa0827270:intron | 40.0% | |
| GTAGAAGAACAATGCTGGAA+AGG | - | chr5_3:68424674-68424693 | None:intergenic | 40.0% | |
| TTCCAGCATTGTTCTTCTAC+TGG | + | chr5_3:68424674-68424693 | Msa0827270:CDS | 40.0% | |
| AACCAGTAGAAGAACAATGC+TGG | - | chr5_3:68424679-68424698 | None:intergenic | 40.0% | |
| AGAACCGAGGAGAACAATAT+GGG | + | chr5_3:68424710-68424729 | Msa0827270:CDS | 40.0% | |
| ACATCCCATATTGTTCTCCT+CGG | - | chr5_3:68424717-68424736 | None:intergenic | 40.0% | |
| ATCCATTAGTGGAGGATGAA+CGG | - | chr5_3:68424777-68424796 | None:intergenic | 40.0% | |
| ! | GATTGGTTGTGATCCATTAG+TGG | - | chr5_3:68424788-68424807 | None:intergenic | 40.0% |
| ! | TGTTCTAGTGGATGGAAGTA+TGG | + | chr5_3:68424833-68424852 | Msa0827270:intron | 40.0% |
| TCAATATCAACATGCTGGAG+TGG | - | chr5_3:68425034-68425053 | None:intergenic | 40.0% | |
| TGTCGATGTCTAGTCCTTTA+CGG | + | chr5_3:68425223-68425242 | Msa0827270:intron | 40.0% | |
| ! | TGACACTTGTTGCTAGTTAC+AGG | + | chr5_3:68425389-68425408 | Msa0827270:intron | 40.0% |
| AAATTCTGACCAGCTTCTTC+AGG | + | chr5_3:68425431-68425450 | Msa0827270:CDS | 40.0% | |
| AATTCTGACCAGCTTCTTCA+GGG | + | chr5_3:68425432-68425451 | Msa0827270:CDS | 40.0% | |
| TATCAGATGGCAAGGGAATT+CGG | - | chr5_3:68425482-68425501 | None:intergenic | 40.0% | |
| AATTCCCTTGCCATCTGATA+TGG | + | chr5_3:68425482-68425501 | Msa0827270:CDS | 40.0% | |
| AGCAGTACCATGCTATTATG+AGG | + | chr5_3:68425532-68425551 | Msa0827270:CDS | 40.0% | |
| CATGCATTAAAGAGAGCTAG+AGG | + | chr5_3:68425724-68425743 | Msa0827270:CDS | 40.0% | |
| ! | GCGAATCAAGCTTTGATTCT+TGG | - | chr5_3:68425783-68425802 | None:intergenic | 40.0% |
| !! | TGGTGGAAACATTTTGGTCA+TGG | - | chr5_3:68425810-68425829 | None:intergenic | 40.0% |
| GGAATCCAAAATGCTTGATC+AGG | + | chr5_3:68425864-68425883 | Msa0827270:CDS | 40.0% | |
| GATGCTTCTGATGTCACATA+CGG | + | chr5_3:68425904-68425923 | Msa0827270:CDS | 40.0% | |
| ATGTCACATACGGATCTCAT+AGG | + | chr5_3:68425914-68425933 | Msa0827270:CDS | 40.0% | |
| TGAAATGTTTCAGCAGCAAC+AGG | + | chr5_3:68425939-68425958 | Msa0827270:CDS | 40.0% | |
| TTCTACAAGTCTCTCACATG+CGG | - | chr5_3:68426071-68426090 | None:intergenic | 40.0% | |
| TGTAGAACACATCATTGTGG+TGG | + | chr5_3:68426084-68426103 | Msa0827270:three_prime_UTR | 40.0% | |
| TGTTCTCCAATCTCTACCAT+TGG | + | chr5_3:68426157-68426176 | Msa0827270:three_prime_UTR | 40.0% | |
| GTTCTCCAATCTCTACCATT+GGG | + | chr5_3:68426158-68426177 | Msa0827270:three_prime_UTR | 40.0% | |
| AACTGTGCATGTGTTTAGCG+GGG | - | chr5_3:68422661-68422680 | None:intergenic | 45.0% | |
| !! | ATGGAGGGTAAGTTGATCCA+AGG | + | chr5_3:68423297-68423316 | Msa0827270:intron | 45.0% |
| !! | TGGAGGGTAAGTTGATCCAA+GGG | + | chr5_3:68423298-68423317 | Msa0827270:intron | 45.0% |
| ATAGAGGATTGGACGAACCA+TGG | - | chr5_3:68423337-68423356 | None:intergenic | 45.0% | |
| CAATCACTTACGCTAGACCA+CGG | + | chr5_3:68423432-68423451 | Msa0827270:intron | 45.0% | |
| ! | GGTACTCACGGGATTTTGTA+TGG | + | chr5_3:68423456-68423475 | Msa0827270:intron | 45.0% |
| TACTGCAACGATAATCTGGC+AGG | + | chr5_3:68423598-68423617 | Msa0827270:intron | 45.0% | |
| ! | TCAACATCCCACCGTGTTTT+CGG | + | chr5_3:68423751-68423770 | Msa0827270:CDS | 45.0% |
| ! | GTGTTTTCGGATGTCCATCA+TGG | + | chr5_3:68423764-68423783 | Msa0827270:CDS | 45.0% |
| ! | GTTTTCGGATGTCCATCATG+GGG | + | chr5_3:68423766-68423785 | Msa0827270:CDS | 45.0% |
| TCAGAAGATCTTCCCCATGA+TGG | - | chr5_3:68423781-68423800 | None:intergenic | 45.0% | |
| AAAGTGGAAGCTCTACCACA+AGG | + | chr5_3:68423844-68423863 | Msa0827270:CDS | 45.0% | |
| TTACTGTTGTGGCATCCTTG+TGG | - | chr5_3:68423862-68423881 | None:intergenic | 45.0% | |
| ! | CTATGTGAGTCGGTGTCTTT+CGG | - | chr5_3:68424129-68424148 | None:intergenic | 45.0% |
| CATACACAGACAACGGACAT+TGG | - | chr5_3:68424192-68424211 | None:intergenic | 45.0% | |
| CAATGTCCGTTGTCTGTGTA+TGG | + | chr5_3:68424190-68424209 | Msa0827270:intron | 45.0% | |
| ATACTAATCAAATGGGGGCG+TGG | - | chr5_3:68424622-68424641 | None:intergenic | 45.0% | |
| GAGAACCGAGGAGAACAATA+TGG | + | chr5_3:68424709-68424728 | Msa0827270:CDS | 45.0% | |
| TGGTTGTGATCCATTAGTGG+AGG | - | chr5_3:68424785-68424804 | None:intergenic | 45.0% | |
| TATGCTGATCCAGGCTACAA+TGG | + | chr5_3:68424915-68424934 | Msa0827270:CDS | 45.0% | |
| GGCCTACTTTCTGCTTCATA+TGG | + | chr5_3:68424936-68424955 | Msa0827270:CDS | 45.0% | |
| GGCCATATGAAGCAGAAAGT+AGG | - | chr5_3:68424941-68424960 | None:intergenic | 45.0% | |
| CAACATGCTGGAGTGGAATA+CGG | - | chr5_3:68425027-68425046 | None:intergenic | 45.0% | |
| TTAGGAGTAGATGTTGCAGC+TGG | + | chr5_3:68425139-68425158 | Msa0827270:intron | 45.0% | |
| CAGAAGCAGTTTCCATTAGC+TGG | - | chr5_3:68425458-68425477 | None:intergenic | 45.0% | |
| GTCTTCGCCTCATAATAGCA+TGG | - | chr5_3:68425542-68425561 | None:intergenic | 45.0% | |
| TTATGAGGCGAAGACAGTGT+CGG | + | chr5_3:68425547-68425566 | Msa0827270:CDS | 45.0% | |
| ! | TTAAAGAGAGCTAGAGGTGC+CGG | + | chr5_3:68425730-68425749 | Msa0827270:CDS | 45.0% |
| AGCAACAGGAGTTAGAGTTC+AGG | + | chr5_3:68425953-68425972 | Msa0827270:CDS | 45.0% | |
| AGTTACCCTTCTTCTCAGAC+TGG | + | chr5_3:68425982-68426001 | Msa0827270:CDS | 45.0% | |
| TCCTTCCAGTCTGAGAAGAA+GGG | - | chr5_3:68425990-68426009 | None:intergenic | 45.0% | |
| TTCCTTCCAGTCTGAGAAGA+AGG | - | chr5_3:68425991-68426010 | None:intergenic | 45.0% | |
| GACTTCCCAATGGTAGAGAT+TGG | - | chr5_3:68426166-68426185 | None:intergenic | 45.0% | |
| TACCATTGGGAAGTCATCCT+TGG | + | chr5_3:68426171-68426190 | Msa0827270:three_prime_UTR | 45.0% | |
| TGTGACTCTATCGTAGTCGT+TGG | + | chr5_3:68426434-68426453 | Msa0827270:three_prime_UTR | 45.0% | |
| CGTAGTCGTTGGATTGAGAT+TGG | + | chr5_3:68426445-68426464 | Msa0827270:three_prime_UTR | 45.0% | |
| TCGTTGGATTGAGATTGGCA+GGG | + | chr5_3:68426450-68426469 | Msa0827270:three_prime_UTR | 45.0% | |
| !!! | ATAATTCATTAAATTTTAAA+AGG | - | chr5_3:68425078-68425097 | None:intergenic | 5.0% |
| GAGACACCTTGGAAATTGGG+TGG | - | chr5_3:68422700-68422719 | None:intergenic | 50.0% | |
| TGGACATCCGAAAACACGGT+GGG | - | chr5_3:68423761-68423780 | None:intergenic | 50.0% | |
| ATGGACATCCGAAAACACGG+TGG | - | chr5_3:68423762-68423781 | None:intergenic | 50.0% | |
| ! | TCGACTGGCTCATCACAATC+AGG | + | chr5_3:68423928-68423947 | Msa0827270:CDS | 50.0% |
| GTGATTCCGTGCTTGTCAAC+TGG | + | chr5_3:68423975-68423994 | Msa0827270:intron | 50.0% | |
| CACTAACACGTGTCTCACAC+CGG | - | chr5_3:68424105-68424124 | None:intergenic | 50.0% | |
| ATAGCCAGTGCTAACCAAGG+AGG | - | chr5_3:68424296-68424315 | None:intergenic | 50.0% | |
| GGAGGATGAACGGTGAGATT+TGG | - | chr5_3:68424767-68424786 | None:intergenic | 50.0% | |
| CACCGTTCATCCTCCACTAA+TGG | + | chr5_3:68424772-68424791 | Msa0827270:CDS | 50.0% | |
| TGTAGCCTGGATCAGCATAG+TGG | - | chr5_3:68424914-68424933 | None:intergenic | 50.0% | |
| GAAAGTAGGCCATTGTAGCC+TGG | - | chr5_3:68424927-68424946 | None:intergenic | 50.0% | |
| CTAGACATCGACAGAGAGCA+CGG | - | chr5_3:68425216-68425235 | None:intergenic | 50.0% | |
| AGCTGAACTAGTAGTCCCTC+TGG | - | chr5_3:68425302-68425321 | None:intergenic | 50.0% | |
| TCCCTTGCCATCTGATATGG+CGG | + | chr5_3:68425485-68425504 | Msa0827270:CDS | 50.0% | |
| TCCGCCATATCAGATGGCAA+GGG | - | chr5_3:68425489-68425508 | None:intergenic | 50.0% | |
| TTCCGCCATATCAGATGGCA+AGG | - | chr5_3:68425490-68425509 | None:intergenic | 50.0% | |
| GGTTCTTCCGCCATATCAGA+TGG | - | chr5_3:68425495-68425514 | None:intergenic | 50.0% | |
| TATGAGGCGAAGACAGTGTC+GGG | + | chr5_3:68425548-68425567 | Msa0827270:CDS | 50.0% | |
| TGTCGGGACTCGTGAAGATA+TGG | - | chr5_3:68425700-68425719 | None:intergenic | 50.0% | |
| ! | AGCATTGAGAAAACGGCCAC+CGG | - | chr5_3:68425752-68425771 | None:intergenic | 50.0% |
| ACCCTTCTTCTCAGACTGGA+AGG | + | chr5_3:68425986-68426005 | Msa0827270:CDS | 50.0% | |
| ACAAGTCTCTCACATGCGGA+CGG | - | chr5_3:68426067-68426086 | None:intergenic | 50.0% | |
| AGCCAAGGATGACTTCCCAA+TGG | - | chr5_3:68426176-68426195 | None:intergenic | 50.0% | |
| GTCGTTGGATTGAGATTGGC+AGG | + | chr5_3:68426449-68426468 | Msa0827270:three_prime_UTR | 50.0% | |
| TGGATTGAGATTGGCAGGGA+CGG | + | chr5_3:68426454-68426473 | Msa0827270:three_prime_UTR | 50.0% | |
| !! | AGGAATCAAACTCGGTGCCC+CGG | + | chr5_3:68423401-68423420 | Msa0827270:intron | 55.0% |
| TCACTTACGCTAGACCACGG+TGG | + | chr5_3:68423435-68423454 | Msa0827270:intron | 55.0% | |
| CTAGACCACGGTGGTACTCA+CGG | + | chr5_3:68423444-68423463 | Msa0827270:intron | 55.0% | |
| TAGACCACGGTGGTACTCAC+GGG | + | chr5_3:68423445-68423464 | Msa0827270:intron | 55.0% | |
| AAATCCCGTGAGTACCACCG+TGG | - | chr5_3:68423452-68423471 | None:intergenic | 55.0% | |
| CCAGTGCTAACCAAGGAGGT+AGG | - | chr5_3:68424292-68424311 | None:intergenic | 55.0% | |
| CCTACCTCCTTGGTTAGCAC+TGG | + | chr5_3:68424289-68424308 | Msa0827270:intron | 55.0% | |
| GCACTCCACTATGCTGATCC+AGG | + | chr5_3:68424906-68424925 | Msa0827270:CDS | 55.0% | |
| TTAGCTGGCCCTGAAGAAGC+TGG | - | chr5_3:68425443-68425462 | None:intergenic | 55.0% | |
| GCTTCTTCAGGGCCAGCTAA+TGG | + | chr5_3:68425443-68425462 | Msa0827270:CDS | 55.0% | |
| CTCACATGCGGACGGATAGT+CGG | - | chr5_3:68426059-68426078 | None:intergenic | 55.0% | |
| !! | GGAATCAAACTCGGTGCCCC+GGG | + | chr5_3:68423402-68423421 | Msa0827270:intron | 60.0% |
| !! | AAGAGAGCTAGAGGTGCCGG+TGG | + | chr5_3:68425733-68425752 | Msa0827270:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 68422442 | 68426499 | 68422442 | ID=Msa0827270;Name=Msa0827270 |
| chr5_3 | mRNA | 68422442 | 68426499 | 68422442 | ID=Msa0827270-mRNA-1;Parent=Msa0827270;Name=Msa0827270-mRNA-1;_AED=0.23;_eAED=0.23;_QI=302|1|1|1|0.8|0.66|6|422|345 |
| chr5_3 | exon | 68422442 | 68422712 | 68422442 | ID=Msa0827270-mRNA-1:exon:21489;Parent=Msa0827270-mRNA-1 |
| chr5_3 | exon | 68423687 | 68423949 | 68423687 | ID=Msa0827270-mRNA-1:exon:21490;Parent=Msa0827270-mRNA-1 |
| chr5_3 | exon | 68424663 | 68424811 | 68424663 | ID=Msa0827270-mRNA-1:exon:21491;Parent=Msa0827270-mRNA-1 |
| chr5_3 | exon | 68424897 | 68424971 | 68424897 | ID=Msa0827270-mRNA-1:exon:21492;Parent=Msa0827270-mRNA-1 |
| chr5_3 | exon | 68425411 | 68425611 | 68425411 | ID=Msa0827270-mRNA-1:exon:21493;Parent=Msa0827270-mRNA-1 |
| chr5_3 | exon | 68425697 | 68426499 | 68425697 | ID=Msa0827270-mRNA-1:exon:21494;Parent=Msa0827270-mRNA-1 |
| chr5_3 | five_prime_UTR | 68422442 | 68422712 | 68422442 | ID=Msa0827270-mRNA-1:five_prime_utr;Parent=Msa0827270-mRNA-1 |
| chr5_3 | five_prime_UTR | 68423687 | 68423717 | 68423687 | ID=Msa0827270-mRNA-1:five_prime_utr;Parent=Msa0827270-mRNA-1 |
| chr5_3 | CDS | 68423718 | 68423949 | 68423718 | ID=Msa0827270-mRNA-1:cds;Parent=Msa0827270-mRNA-1 |
| chr5_3 | CDS | 68424663 | 68424811 | 68424663 | ID=Msa0827270-mRNA-1:cds;Parent=Msa0827270-mRNA-1 |
| chr5_3 | CDS | 68424897 | 68424971 | 68424897 | ID=Msa0827270-mRNA-1:cds;Parent=Msa0827270-mRNA-1 |
| chr5_3 | CDS | 68425411 | 68425611 | 68425411 | ID=Msa0827270-mRNA-1:cds;Parent=Msa0827270-mRNA-1 |
| chr5_3 | CDS | 68425697 | 68426077 | 68425697 | ID=Msa0827270-mRNA-1:cds;Parent=Msa0827270-mRNA-1 |
| chr5_3 | three_prime_UTR | 68426078 | 68426499 | 68426078 | ID=Msa0827270-mRNA-1:three_prime_utr;Parent=Msa0827270-mRNA-1 |
| Gene Sequence |
| Protein sequence |
