Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1089340 | XP_024633082.1 | 95.072 | 345 | 17 | 0 | 1 | 345 | 1 | 345 | 0.0 | 659 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1089340 | sp|Q9LNP6|NFYA8_ARATH | 38.028 | 355 | 163 | 13 | 10 | 345 | 12 | 328 | 2.79e-51 | 176 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1089340 | A0A396JG16 | 95.072 | 345 | 17 | 0 | 1 | 345 | 1 | 345 | 0.0 | 659 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1089340 | TF | NF-YA |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0827270 | Msa1089340 | 0.803440 | 3.482102e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1089340 | MtrunA17_Chr2g0329811 | 95.072 | 345 | 17 | 0 | 1 | 345 | 1 | 345 | 0.0 | 659 |
| Msa1089340 | MtrunA17_Chr8g0343451 | 51.176 | 340 | 121 | 12 | 23 | 345 | 7 | 318 | 3.13e-84 | 258 |
| Msa1089340 | MtrunA17_Chr2g0300261 | 55.882 | 136 | 48 | 4 | 121 | 253 | 19 | 145 | 2.73e-40 | 141 |
| Msa1089340 | MtrunA17_Chr2g0292411 | 52.174 | 115 | 51 | 2 | 168 | 282 | 95 | 205 | 3.72e-33 | 122 |
| Msa1089340 | MtrunA17_Chr3g0103391 | 50.376 | 133 | 51 | 3 | 114 | 246 | 112 | 229 | 3.84e-31 | 120 |
| Msa1089340 | MtrunA17_Chr8g0352251 | 56.311 | 103 | 40 | 1 | 144 | 246 | 117 | 214 | 8.82e-31 | 118 |
| Msa1089340 | MtrunA17_Chr1g0177091 | 41.844 | 141 | 67 | 4 | 108 | 245 | 95 | 223 | 2.82e-24 | 101 |
| Msa1089340 | MtrunA17_Chr7g0267581 | 51.000 | 100 | 40 | 3 | 147 | 246 | 136 | 226 | 3.61e-24 | 101 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1089340 | AT1G17590.3 | 38.028 | 355 | 163 | 13 | 10 | 345 | 12 | 328 | 2.83e-52 | 176 |
| Msa1089340 | AT1G17590.2 | 38.028 | 355 | 163 | 13 | 10 | 345 | 12 | 328 | 2.83e-52 | 176 |
| Msa1089340 | AT1G17590.4 | 38.028 | 355 | 163 | 13 | 10 | 345 | 12 | 328 | 2.83e-52 | 176 |
| Msa1089340 | AT1G17590.1 | 38.028 | 355 | 163 | 13 | 10 | 345 | 12 | 328 | 2.83e-52 | 176 |
| Msa1089340 | AT1G72830.1 | 36.826 | 334 | 169 | 11 | 2 | 318 | 4 | 312 | 3.61e-49 | 168 |
| Msa1089340 | AT1G72830.2 | 36.716 | 335 | 169 | 12 | 2 | 318 | 4 | 313 | 2.05e-47 | 164 |
| Msa1089340 | AT1G54160.1 | 38.281 | 256 | 107 | 8 | 22 | 250 | 11 | 242 | 4.12e-40 | 144 |
| Msa1089340 | AT3G14020.2 | 37.690 | 329 | 134 | 16 | 20 | 318 | 13 | 300 | 1.28e-39 | 142 |
| Msa1089340 | AT3G14020.1 | 37.690 | 329 | 134 | 16 | 20 | 318 | 13 | 300 | 1.28e-39 | 142 |
| Msa1089340 | AT1G72830.3 | 34.535 | 333 | 153 | 11 | 2 | 318 | 4 | 287 | 1.73e-37 | 137 |
| Msa1089340 | AT1G30500.2 | 52.344 | 128 | 57 | 2 | 131 | 254 | 41 | 168 | 1.16e-36 | 131 |
| Msa1089340 | AT1G30500.1 | 52.800 | 125 | 57 | 2 | 131 | 254 | 41 | 164 | 2.24e-36 | 130 |
| Msa1089340 | AT2G34720.1 | 51.613 | 124 | 51 | 3 | 123 | 246 | 44 | 158 | 2.49e-33 | 122 |
| Msa1089340 | AT2G34720.2 | 52.941 | 119 | 47 | 3 | 128 | 246 | 14 | 123 | 5.15e-32 | 118 |
| Msa1089340 | AT2G34720.3 | 52.941 | 119 | 47 | 3 | 128 | 246 | 14 | 123 | 5.15e-32 | 118 |
| Msa1089340 | AT3G20910.1 | 45.926 | 135 | 59 | 4 | 117 | 251 | 111 | 231 | 6.78e-30 | 116 |
| Msa1089340 | AT5G12840.5 | 46.269 | 134 | 56 | 4 | 116 | 248 | 116 | 234 | 3.56e-28 | 111 |
| Msa1089340 | AT5G12840.3 | 46.269 | 134 | 56 | 4 | 116 | 248 | 116 | 234 | 3.56e-28 | 111 |
| Msa1089340 | AT5G12840.1 | 46.269 | 134 | 56 | 4 | 116 | 248 | 116 | 234 | 3.56e-28 | 111 |
| Msa1089340 | AT5G12840.4 | 46.269 | 134 | 56 | 4 | 116 | 248 | 115 | 233 | 3.87e-28 | 110 |
| Msa1089340 | AT5G12840.2 | 46.269 | 134 | 56 | 4 | 116 | 248 | 115 | 233 | 3.87e-28 | 110 |
| Msa1089340 | AT5G06510.4 | 48.214 | 112 | 46 | 4 | 149 | 259 | 9 | 109 | 5.90e-24 | 97.1 |
| Msa1089340 | AT5G06510.7 | 48.214 | 112 | 46 | 4 | 149 | 259 | 9 | 109 | 5.90e-24 | 97.1 |
| Msa1089340 | AT5G06510.1 | 47.788 | 113 | 47 | 4 | 149 | 260 | 104 | 205 | 1.38e-23 | 98.6 |
| Msa1089340 | AT5G06510.5 | 47.788 | 113 | 47 | 4 | 149 | 260 | 104 | 205 | 1.38e-23 | 98.6 |
| Msa1089340 | AT5G06510.2 | 47.788 | 113 | 47 | 4 | 149 | 260 | 104 | 205 | 1.38e-23 | 98.6 |
| Msa1089340 | AT5G06510.6 | 47.788 | 113 | 47 | 4 | 149 | 260 | 104 | 205 | 1.38e-23 | 98.6 |
| Msa1089340 | AT5G06510.3 | 47.788 | 113 | 47 | 4 | 149 | 260 | 55 | 156 | 2.49e-23 | 96.7 |
| Msa1089340 | AT3G05690.1 | 48.544 | 103 | 39 | 4 | 147 | 245 | 107 | 199 | 7.55e-20 | 89.0 |
| Msa1089340 | AT3G05690.2 | 48.544 | 103 | 39 | 4 | 147 | 245 | 144 | 236 | 1.18e-19 | 89.0 |
Find 111 sgRNAs with CRISPR-Local
Find 249 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGCTTTGAATTCACATATA+TGG | 0.180422 | 7_3:+2671902 | None:intergenic |
| CACTTTGAAGCTCAAACTTT+TGG | 0.192638 | 7_3:+2673590 | None:intergenic |
| AAGAGAGACACCTTGGAAAT+TGG | 0.211241 | 7_3:+2674716 | None:intergenic |
| TTCAACCTGATCATGCATTT+TGG | 0.229189 | 7_3:+2671547 | None:intergenic |
| GCGAATCAAGCTTTGATTCT+TGG | 0.254868 | 7_3:+2671636 | None:intergenic |
| TTCATATGGCCAACAATATA+AGG | 0.305273 | 7_3:-2672466 | Msa1089340:intron |
| TATAGCTGGTGGAAACATTT+TGG | 0.306979 | 7_3:+2671603 | None:intergenic |
| GAGAACCGAGGAGAACAATA+TGG | 0.321909 | 7_3:-2672707 | Msa1089340:CDS |
| AATTCCCTTGCCATCTGATA+TGG | 0.331961 | 7_3:-2671934 | Msa1089340:CDS |
| AAATTCTGACCAGCTTCTTC+AGG | 0.334629 | 7_3:-2671985 | Msa1089340:CDS |
| CTCATCGAATCATCATCTAT+TGG | 0.336945 | 7_3:-2672679 | Msa1089340:CDS |
| TGCTTTGAATTCACATATAT+GGG | 0.338735 | 7_3:+2671903 | None:intergenic |
| TTCCAGCATTGTTCTTCTAC+TGG | 0.343547 | 7_3:-2672742 | Msa1089340:CDS |
| ATATTTGATTTGATATTGTA+TGG | 0.343754 | 7_3:-2671023 | Msa1089340:three_prime_UTR |
| GGAGGATGGACGGTGAGATT+TGG | 0.358180 | 7_3:+2672652 | None:intergenic |
| GCTTCTTCAGGGCCAGCTAA+TGG | 0.362306 | 7_3:-2671973 | Msa1089340:CDS |
| GGCCTACTTTCTGCTTCATA+TGG | 0.362322 | 7_3:-2672480 | Msa1089340:CDS |
| CACCGTCCATCCTCCACTAA+TGG | 0.364359 | 7_3:-2672644 | Msa1089340:CDS |
| TATTGTGTAGCCTATTGTTT+AGG | 0.371376 | 7_3:-2671162 | Msa1089340:three_prime_UTR |
| TATACTTGTTTGAATTTGAA+TGG | 0.374199 | 7_3:-2671584 | Msa1089340:CDS |
| TATCAGATGGCAAGGGAATT+CGG | 0.376992 | 7_3:+2671937 | None:intergenic |
| TACAAATTACCTTATATTGT+TGG | 0.397767 | 7_3:+2672457 | None:intergenic |
| AGAGAGACACCTTGGAAATT+GGG | 0.399599 | 7_3:+2674717 | None:intergenic |
| TCATCGAATCATCATCTATT+GGG | 0.410536 | 7_3:-2672678 | Msa1089340:CDS |
| CAGAAGCAGTTTCCATTAGC+TGG | 0.410914 | 7_3:+2671961 | None:intergenic |
| TGTCGGGACTCGTGAAGATA+TGG | 0.413042 | 7_3:+2671719 | None:intergenic |
| GTCGTTGGATTGAGATTGGC+AGG | 0.414168 | 7_3:-2670971 | Msa1089340:three_prime_UTR |
| TATATCTGCTTACAAGTGAT+TGG | 0.427209 | 7_3:+2672614 | None:intergenic |
| AGCACATAACAAACTCATAA+AGG | 0.430383 | 7_3:-2671835 | Msa1089340:CDS |
| CGTAGTCGTTGGATTGAGAT+TGG | 0.431388 | 7_3:-2670975 | Msa1089340:three_prime_UTR |
| GACTTCCCAATGGTAGAGAT+TGG | 0.446162 | 7_3:+2671253 | None:intergenic |
| TGTTCTCCAATCTCTACCAT+TGG | 0.450928 | 7_3:-2671259 | Msa1089340:three_prime_UTR |
| GAGACCAAGTACAACGCAAC+GGG | 0.451752 | 7_3:-2674989 | None:intergenic |
| TGAAATGTTTCAGCAGCAAC+AGG | 0.453392 | 7_3:-2671477 | Msa1089340:CDS |
| ATGTCACATACGGATCTCAT+AGG | 0.460134 | 7_3:-2671502 | Msa1089340:CDS |
| TACCATTGGGAAGTCATCCT+TGG | 0.465460 | 7_3:-2671245 | Msa1089340:three_prime_UTR |
| TTCCTTCCAGTCTGAGAAGA+AGG | 0.473570 | 7_3:+2671428 | None:intergenic |
| AATTCTGACCAGCTTCTTCA+GGG | 0.474643 | 7_3:-2671984 | Msa1089340:CDS |
| GTTCTCCAATCTCTACCATT+GGG | 0.476792 | 7_3:-2671258 | Msa1089340:three_prime_UTR |
| AGCAACAGGAGTTAGAGTTC+AGG | 0.485902 | 7_3:-2671463 | Msa1089340:CDS |
| CAAATTCAAACAAGTATAGC+TGG | 0.488784 | 7_3:+2671589 | None:intergenic |
| GAATTTGAATGGAAATATGT+CGG | 0.489962 | 7_3:-2671573 | Msa1089340:CDS |
| GGAATCCAAAATGCATGATC+AGG | 0.490416 | 7_3:-2671552 | Msa1089340:CDS |
| AAACTGTGCATGTGTTTAGC+GGG | 0.495473 | 7_3:+2674758 | None:intergenic |
| CTTTAATGCATGTACATGTC+GGG | 0.500813 | 7_3:+2671703 | None:intergenic |
| TCGACTGGCTCATCACAATC+AGG | 0.502357 | 7_3:-2673489 | Msa1089340:intron |
| GAAAGTAGGCCATTGTAGCC+TGG | 0.505229 | 7_3:+2672492 | None:intergenic |
| TATTTGATTTGATATTGTAT+GGG | 0.506084 | 7_3:-2671022 | Msa1089340:three_prime_UTR |
| GCACTCCACTATGCTGATCC+AGG | 0.508579 | 7_3:-2672510 | Msa1089340:CDS |
| AACCAGTAGAAGAACAATGC+TGG | 0.515161 | 7_3:+2672740 | None:intergenic |
| TATGAGGCGAAGACAGTGTC+GGG | 0.515554 | 7_3:-2671868 | Msa1089340:CDS |
| TCAGAAGATCTTCCCCATGA+TGG | 0.517971 | 7_3:+2673639 | None:intergenic |
| AGCAGTACCATGCTATTATG+AGG | 0.519657 | 7_3:-2671884 | Msa1089340:CDS |
| TCTTTAATGCATGTACATGT+CGG | 0.521057 | 7_3:+2671702 | None:intergenic |
| TGGAGAACACAATCAAATAG+TGG | 0.522439 | 7_3:+2671273 | None:intergenic |
| AGAACCGAGGAGAACAATAT+GGG | 0.525995 | 7_3:-2672706 | Msa1089340:CDS |
| TTCTGCCATATCAGATGGCA+AGG | 0.529748 | 7_3:+2671929 | None:intergenic |
| AACTCAGTGCTTTACTGTTG+TGG | 0.539967 | 7_3:+2673547 | None:intergenic |
| TAGATTGACATAAGAGTGGT+GGG | 0.542716 | 7_3:+2674849 | None:intergenic |
| AGCATTGAGAAAACGGCCAC+CGG | 0.542799 | 7_3:+2671667 | None:intergenic |
| TGTGACTCTATCGTAGTCGT+TGG | 0.542828 | 7_3:-2670986 | Msa1089340:three_prime_UTR |
| ACATCCCATATTGTTCTCCT+CGG | 0.546379 | 7_3:+2672702 | None:intergenic |
| TGGATTGAGATTGGCAGGGA+CGG | 0.550298 | 7_3:-2670966 | Msa1089340:three_prime_UTR |
| CAAAAGTTTGAGCTTCAAAG+TGG | 0.551748 | 7_3:-2673589 | Msa1089340:CDS |
| TTAGCTGGCCCTGAAGAAGC+TGG | 0.554264 | 7_3:+2671976 | None:intergenic |
| GTAGAAGAACAATGCTGGAA+AGG | 0.555226 | 7_3:+2672745 | None:intergenic |
| TTAAAGAGAGCTAGAGGTGC+CGG | 0.556911 | 7_3:-2671686 | Msa1089340:CDS |
| CTAAATCCACCCAATTTCCA+AGG | 0.559695 | 7_3:-2674726 | Msa1089340:intron |
| TCATCTTCAACTCAATCGAC+TGG | 0.564458 | 7_3:-2673504 | Msa1089340:CDS |
| ATTTGATTTGATATTGTATG+GGG | 0.566050 | 7_3:-2671021 | Msa1089340:three_prime_UTR |
| GATTGGCTGTGATCCATTAG+TGG | 0.569834 | 7_3:+2672631 | None:intergenic |
| ACCCTTCTTCTCAGACTGGA+AGG | 0.577435 | 7_3:-2671430 | Msa1089340:CDS |
| CTCACATGCGGACGGATAGT+CGG | 0.579968 | 7_3:+2671360 | None:intergenic |
| TGTAGCCTGGATCAGCATAG+TGG | 0.581932 | 7_3:+2672505 | None:intergenic |
| ATGATGGACATCCGAAAACA+TGG | 0.581989 | 7_3:+2673655 | None:intergenic |
| GATGCTTCTGATGTCACATA+CGG | 0.584773 | 7_3:-2671512 | Msa1089340:CDS |
| TATGCTGATCCAGGCTACAA+TGG | 0.586886 | 7_3:-2672501 | Msa1089340:CDS |
| GGTTCTTCTGCCATATCAGA+TGG | 0.587308 | 7_3:+2671924 | None:intergenic |
| GAAACTGTGCATGTGTTTAG+CGG | 0.595023 | 7_3:+2674757 | None:intergenic |
| GAGACACCTTGGAAATTGGG+TGG | 0.604945 | 7_3:+2674720 | None:intergenic |
| AGTTACCCTTCTTCTCAGAC+TGG | 0.606122 | 7_3:-2671434 | Msa1089340:CDS |
| ATTCAAACAAGTATAGCTGG+TGG | 0.610080 | 7_3:+2671592 | None:intergenic |
| GGCCATATGAAGCAGAAAGT+AGG | 0.615452 | 7_3:+2672478 | None:intergenic |
| TACAAAGCTGACAAGAATGT+TGG | 0.616527 | 7_3:-2671395 | Msa1089340:CDS |
| TTATGAGGCGAAGACAGTGT+CGG | 0.619331 | 7_3:-2671869 | Msa1089340:CDS |
| ATAGATTGACATAAGAGTGG+TGG | 0.625247 | 7_3:+2674848 | None:intergenic |
| ACATAAGTAAATATGAGCCA+AGG | 0.627513 | 7_3:+2671228 | None:intergenic |
| ATCCATTAGTGGAGGATGGA+CGG | 0.629213 | 7_3:+2672642 | None:intergenic |
| TTACTGTTGTGGCATCCTTG+TGG | 0.631295 | 7_3:+2673558 | None:intergenic |
| AGAGACCAAGTACAACGCAA+CGG | 0.633643 | 7_3:-2674990 | None:intergenic |
| ACAAGTCTCTCACATGCGGA+CGG | 0.640777 | 7_3:+2671352 | None:intergenic |
| GTCTTCGCCTCATAATAGCA+TGG | 0.641090 | 7_3:+2671877 | None:intergenic |
| TCCTTCCAGTCTGAGAAGAA+GGG | 0.646710 | 7_3:+2671429 | None:intergenic |
| GTCATAGATTGACATAAGAG+TGG | 0.646950 | 7_3:+2674845 | None:intergenic |
| CATGCATTAAAGAGAGCTAG+AGG | 0.647089 | 7_3:-2671692 | Msa1089340:CDS |
| TTCTACAAGTCTCTCACATG+CGG | 0.648923 | 7_3:+2671348 | None:intergenic |
| TGTGATCCATTAGTGGAGGA+TGG | 0.649182 | 7_3:+2672638 | None:intergenic |
| TGTAGAACACATCATTGTGG+TGG | 0.651381 | 7_3:-2671332 | Msa1089340:three_prime_UTR |
| AACTGTGCATGTGTTTAGCG+GGG | 0.651614 | 7_3:+2674759 | None:intergenic |
| ACAACAAATAAAGTCACACT+AGG | 0.653661 | 7_3:+2671081 | None:intergenic |
| AGCCAAGGATGACTTCCCAA+TGG | 0.667631 | 7_3:+2671243 | None:intergenic |
| ATGGACATCCGAAAACATGG+TGG | 0.675905 | 7_3:+2673658 | None:intergenic |
| TCGTTGGATTGAGATTGGCA+GGG | 0.677474 | 7_3:-2670970 | Msa1089340:three_prime_UTR |
| AAGAGAGCTAGAGGTGCCGG+TGG | 0.680129 | 7_3:-2671683 | Msa1089340:CDS |
| TCTGCCATATCAGATGGCAA+GGG | 0.688762 | 7_3:+2671930 | None:intergenic |
| TTCAACATTTAAGAGAACCG+AGG | 0.691304 | 7_3:-2672719 | Msa1089340:CDS |
| AGATTGACATAAGAGTGGTG+GGG | 0.695152 | 7_3:+2674850 | None:intergenic |
| TGGCTGTGATCCATTAGTGG+AGG | 0.701564 | 7_3:+2672634 | None:intergenic |
| AAAGTGGAAGCTCTACCACA+AGG | 0.704797 | 7_3:-2673573 | Msa1089340:CDS |
| TGGACATCCGAAAACATGGT+GGG | 0.707024 | 7_3:+2673659 | None:intergenic |
| ACTTGTAGAACACATCATTG+TGG | 0.726366 | 7_3:-2671335 | Msa1089340:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTTCATTTTATTTGTA+AGG | - | chr7_3:2672166-2672185 | Msa1089340:intron | 10.0% |
| !! | TAAGAAAAACTTAAATTATA+TGG | + | chr7_3:2672844-2672863 | None:intergenic | 10.0% |
| !!! | TTAAGTTTTTCTTATAAAAT+TGG | - | chr7_3:2672850-2672869 | Msa1089340:intron | 10.0% |
| !!! | TTTTTTATCTCTTTTAATTA+CGG | - | chr7_3:2673491-2673510 | Msa1089340:CDS | 10.0% |
| !! | AGAAAAAAGACAATTTAATT+TGG | + | chr7_3:2671538-2671557 | None:intergenic | 15.0% |
| !!! | TCTATTTCTTAAATTATTAC+TGG | - | chr7_3:2672665-2672684 | Msa1089340:CDS | 15.0% |
| !!! | TATTTACAAGTTTTTTTTGA+AGG | + | chr7_3:2673617-2673636 | None:intergenic | 15.0% |
| !!! | AATTATTTTGATTTCTTATG+AGG | - | chr7_3:2673826-2673845 | Msa1089340:intron | 15.0% |
| !!! | ATATTTGATTTGATATTGTA+TGG | - | chr7_3:2674895-2674914 | Msa1089340:five_prime_UTR | 15.0% |
| !!! | TATTTGATTTGATATTGTAT+GGG | - | chr7_3:2674896-2674915 | Msa1089340:five_prime_UTR | 15.0% |
| !!! | CAATGATGAAGTTTTTATAT+TGG | - | chr7_3:2671006-2671025 | Msa1089340:three_prime_UTR | 20.0% |
| !!! | AAAAGTGTTAAACTTCAATT+GGG | - | chr7_3:2671436-2671455 | Msa1089340:CDS | 20.0% |
| !! | AATTCAATTGCAAAATAAAG+AGG | + | chr7_3:2671710-2671729 | None:intergenic | 20.0% |
| !! | ATAGTTTCTTGTATGAATAA+TGG | - | chr7_3:2671779-2671798 | Msa1089340:intron | 20.0% |
| !! | TTATATTGATATTACCAAAC+TGG | + | chr7_3:2672014-2672033 | None:intergenic | 20.0% |
| !!! | TAATTCAAAATACGAACTTT+TGG | + | chr7_3:2672076-2672095 | None:intergenic | 20.0% |
| !!! | CATTTTATTTGTAAGGTAAA+TGG | - | chr7_3:2672173-2672192 | Msa1089340:intron | 20.0% |
| !!! | TTCTCATTTTGTTATGTTAT+TGG | - | chr7_3:2672503-2672522 | Msa1089340:CDS | 20.0% |
| !! | TATATATATCTATGTTCTAG+TGG | - | chr7_3:2673323-2673342 | Msa1089340:intron | 20.0% |
| !! | TACAAATTACCTTATATTGT+TGG | + | chr7_3:2673464-2673483 | None:intergenic | 20.0% |
| !! | AAAACTTGTAAATAGATGTT+AGG | - | chr7_3:2673623-2673642 | Msa1089340:CDS | 20.0% |
| !! | TATACTTGTTTGAATTTGAA+TGG | - | chr7_3:2674334-2674353 | Msa1089340:intron | 20.0% |
| !!! | ATTTGATTTGATATTGTATG+GGG | - | chr7_3:2674897-2674916 | Msa1089340:five_prime_UTR | 20.0% |
| !! | GTCATGAAATTTCAAGTAAA+GGG | + | chr7_3:2671281-2671300 | None:intergenic | 25.0% |
| !! | TGTCATGAAATTTCAAGTAA+AGG | + | chr7_3:2671282-2671301 | None:intergenic | 25.0% |
| !!! | GAATTTTTAGCTTAAGATGA+TGG | - | chr7_3:2671326-2671345 | Msa1089340:three_prime_UTR | 25.0% |
| !!! | GAAAAGTGTTAAACTTCAAT+TGG | - | chr7_3:2671435-2671454 | Msa1089340:CDS | 25.0% |
| ! | TACAAATGAATGAAAACCTA+AGG | + | chr7_3:2671470-2671489 | None:intergenic | 25.0% |
| ! | AGACAATGAAATGTTTAAAC+AGG | + | chr7_3:2671641-2671660 | None:intergenic | 25.0% |
| !! | TTTCTTGTATGAATAATGGA+GGG | - | chr7_3:2671783-2671802 | Msa1089340:intron | 25.0% |
| ! | GAAAAGTCTCTATCATTAAT+TGG | + | chr7_3:2671871-2671890 | None:intergenic | 25.0% |
| ! | CAATATAATGTTCCTTTATG+TGG | - | chr7_3:2672026-2672045 | Msa1089340:intron | 25.0% |
| ! | CTATATATTGGTAAAAGCTA+TGG | - | chr7_3:2672814-2672833 | Msa1089340:intron | 25.0% |
| ! | AAATTGGAATTTGTCTTAGA+TGG | - | chr7_3:2672866-2672885 | Msa1089340:intron | 25.0% |
| ! | TGCTGAATTACTTAATTTAG+TGG | - | chr7_3:2673096-2673115 | Msa1089340:intron | 25.0% |
| ! | AGTGCAAATACTAATCAAAT+GGG | + | chr7_3:2673131-2673150 | None:intergenic | 25.0% |
| !! | AGACACTTTTCTCAAAATTT+TGG | - | chr7_3:2673369-2673388 | Msa1089340:intron | 25.0% |
| !! | GACACTTTTCTCAAAATTTT+GGG | - | chr7_3:2673370-2673389 | Msa1089340:intron | 25.0% |
| ! | TAATATCAATATCAACATGC+TGG | + | chr7_3:2673541-2673560 | None:intergenic | 25.0% |
| !! | TCAATTTTCAGTCATAACTA+TGG | + | chr7_3:2673874-2673893 | None:intergenic | 25.0% |
| !! | TGCTTTGAATTCACATATAT+GGG | + | chr7_3:2674018-2674037 | None:intergenic | 25.0% |
| ! | GAATTTGAATGGAAATATGT+CGG | - | chr7_3:2674345-2674364 | Msa1089340:intron | 25.0% |
| AAAATAAAAGAGAGACACCT+TGG | + | chr7_3:2671212-2671231 | None:intergenic | 30.0% | |
| CTGTTCTGTTTGTATATTCT+TGG | - | chr7_3:2671375-2671394 | Msa1089340:CDS | 30.0% | |
| TATAGTAAGCTTTCCATTTC+AGG | - | chr7_3:2671409-2671428 | Msa1089340:CDS | 30.0% | |
| ACACATGGAATAAACTCAAT+TGG | + | chr7_3:2671501-2671520 | None:intergenic | 30.0% | |
| GTATATAAGCAAAAGACACA+TGG | + | chr7_3:2671516-2671535 | None:intergenic | 30.0% | |
| !!! | TACCTTTTTTGCACCAATAA+TGG | - | chr7_3:2671566-2671585 | Msa1089340:CDS | 30.0% |
| TTCCATTATTGGTGCAAAAA+AGG | + | chr7_3:2671571-2671590 | None:intergenic | 30.0% | |
| ! | CCTTCTCTTATTTCCATTAT+TGG | + | chr7_3:2671582-2671601 | None:intergenic | 30.0% |
| ! | CCAATAATGGAAATAAGAGA+AGG | - | chr7_3:2671579-2671598 | Msa1089340:CDS | 30.0% |
| GTTTCTTGTATGAATAATGG+AGG | - | chr7_3:2671782-2671801 | Msa1089340:intron | 30.0% | |
| AATTGGAAGAACTTTCATAG+AGG | + | chr7_3:2671854-2671873 | None:intergenic | 30.0% | |
| ! | AGACTTTTCTTTTTATGACG+AGG | - | chr7_3:2671882-2671901 | Msa1089340:CDS | 30.0% |
| TATTTCTTTCTTGTCCAGTT+TGG | - | chr7_3:2671997-2672016 | Msa1089340:CDS | 30.0% | |
| AACATAAGCATACCACATAA+AGG | + | chr7_3:2672041-2672060 | None:intergenic | 30.0% | |
| ! | GAGTTTTCAATTTCAAGAAC+AGG | - | chr7_3:2672389-2672408 | Msa1089340:intron | 30.0% |
| TACTACTGCAGTTTCTTAAT+AGG | + | chr7_3:2672540-2672559 | None:intergenic | 30.0% | |
| !! | ACACCTTTAATTTGAAGTGT+CGG | + | chr7_3:2672581-2672600 | None:intergenic | 30.0% |
| !! | TATAAATTGACTCGCTTATG+AGG | + | chr7_3:2672954-2672973 | None:intergenic | 30.0% |
| ! | ATCGTTGATGGGAAAATAAA+TGG | - | chr7_3:2672996-2673015 | Msa1089340:intron | 30.0% |
| TTGATGGGAAAATAAATGGT+TGG | - | chr7_3:2673000-2673019 | Msa1089340:intron | 30.0% | |
| TGCAAATACTAATCAAATGG+GGG | + | chr7_3:2673129-2673148 | None:intergenic | 30.0% | |
| GTGCAAATACTAATCAAATG+GGG | + | chr7_3:2673130-2673149 | None:intergenic | 30.0% | |
| CAGTGCAAATACTAATCAAA+TGG | + | chr7_3:2673132-2673151 | None:intergenic | 30.0% | |
| TCATCGAATCATCATCTATT+GGG | - | chr7_3:2673240-2673259 | Msa1089340:intron | 30.0% | |
| TATATCTGCTTACAAGTGAT+TGG | + | chr7_3:2673307-2673326 | None:intergenic | 30.0% | |
| TATATCTATGTTCTAGTGGA+TGG | - | chr7_3:2673327-2673346 | Msa1089340:intron | 30.0% | |
| !!! | TTCTCAAAATTTTGGGTTTC+AGG | - | chr7_3:2673377-2673396 | Msa1089340:intron | 30.0% |
| TTCATATGGCCAACAATATA+AGG | - | chr7_3:2673452-2673471 | Msa1089340:intron | 30.0% | |
| CCATTTAGAGGAACAAATTA+AGG | + | chr7_3:2673682-2673701 | None:intergenic | 30.0% | |
| !! | CCTTAATTTGTTCCTCTAAA+TGG | - | chr7_3:2673679-2673698 | Msa1089340:CDS | 30.0% |
| ATGATTTATGAAAGCCGTAA+AGG | + | chr7_3:2673742-2673761 | None:intergenic | 30.0% | |
| ! | CTGCTTTGAATTCACATATA+TGG | + | chr7_3:2674019-2674038 | None:intergenic | 30.0% |
| AGCACATAACAAACTCATAA+AGG | - | chr7_3:2674083-2674102 | Msa1089340:intron | 30.0% | |
| TCTTTAATGCATGTACATGT+CGG | + | chr7_3:2674219-2674238 | None:intergenic | 30.0% | |
| !! | GCTTTTTAGCATTGAGAAAA+CGG | + | chr7_3:2674261-2674280 | None:intergenic | 30.0% |
| CAAATTCAAACAAGTATAGC+TGG | + | chr7_3:2674332-2674351 | None:intergenic | 30.0% | |
| ACATAAGTAAATATGAGCCA+AGG | + | chr7_3:2674693-2674712 | None:intergenic | 30.0% | |
| TATTGTGTAGCCTATTGTTT+AGG | - | chr7_3:2674756-2674775 | Msa1089340:five_prime_UTR | 30.0% | |
| !!! | GTGTTTTTTGCCTAAACAAT+AGG | + | chr7_3:2674769-2674788 | None:intergenic | 30.0% |
| ! | TGCTTTTCTAAGTTTAATGC+TGG | - | chr7_3:2674812-2674831 | Msa1089340:five_prime_UTR | 30.0% |
| ACAACAAATAAAGTCACACT+AGG | + | chr7_3:2674840-2674859 | None:intergenic | 30.0% | |
| ATTCAAAAAACTCGGTTCTT+CGG | + | chr7_3:2674868-2674887 | None:intergenic | 30.0% | |
| TGTGTCGAATTCAAAAAACT+CGG | + | chr7_3:2674876-2674895 | None:intergenic | 30.0% | |
| TAGATTGACATAAGAGTGGT+GGG | + | chr7_3:2671072-2671091 | None:intergenic | 35.0% | |
| ATAGATTGACATAAGAGTGG+TGG | + | chr7_3:2671073-2671092 | None:intergenic | 35.0% | |
| GTCATAGATTGACATAAGAG+TGG | + | chr7_3:2671076-2671095 | None:intergenic | 35.0% | |
| ! | AACACTTTTCCTACCTGAAA+TGG | + | chr7_3:2671425-2671444 | None:intergenic | 35.0% |
| CAATTGGGAAAGAATTCCTT+AGG | - | chr7_3:2671451-2671470 | Msa1089340:CDS | 35.0% | |
| GAAGAACTTTCATAGAGGAT+TGG | + | chr7_3:2671849-2671868 | None:intergenic | 35.0% | |
| TTATGACGAGGAATCAAACT+CGG | - | chr7_3:2671894-2671913 | Msa1089340:CDS | 35.0% | |
| TAAGTGATTGTTGTAAACCC+GGG | + | chr7_3:2671923-2671942 | None:intergenic | 35.0% | |
| GTAAGTGATTGTTGTAAACC+CGG | + | chr7_3:2671924-2671943 | None:intergenic | 35.0% | |
| AAGATACTGCAACGATAATC+TGG | - | chr7_3:2672095-2672114 | Msa1089340:intron | 35.0% | |
| !!! | ATCTAGCTACAGCTTTTTCA+TGG | + | chr7_3:2672128-2672147 | None:intergenic | 35.0% |
| AAAAAGCTGTAGCTAGATCT+AGG | - | chr7_3:2672130-2672149 | Msa1089340:intron | 35.0% | |
| ! | TTTTGGACATGGATGTTTGT+TGG | + | chr7_3:2672314-2672333 | None:intergenic | 35.0% |
| !!! | CACTTTGAAGCTCAAACTTT+TGG | + | chr7_3:2672331-2672350 | None:intergenic | 35.0% |
| CAAAAGTTTGAGCTTCAAAG+TGG | - | chr7_3:2672329-2672348 | Msa1089340:intron | 35.0% | |
| !! | CTTCAAATTAAAGGTGTCTC+CGG | - | chr7_3:2672584-2672603 | Msa1089340:intron | 35.0% |
| TCGAATGTAACTATGTGAGT+CGG | + | chr7_3:2672640-2672659 | None:intergenic | 35.0% | |
| !! | CTGTTCTTCATAGCTTTTTC+TGG | - | chr7_3:2672718-2672737 | Msa1089340:CDS | 35.0% |
| ATTATGTAAACCTACCTCCT+TGG | - | chr7_3:2672781-2672800 | Msa1089340:intron | 35.0% | |
| AGTTATGAAGTAACGTGTCA+AGG | + | chr7_3:2672913-2672932 | None:intergenic | 35.0% | |
| CAAGATATCTCATCGTTGAT+GGG | - | chr7_3:2672985-2673004 | Msa1089340:intron | 35.0% | |
| GATTAGTATTTGCACTGTGT+TGG | - | chr7_3:2673135-2673154 | Msa1089340:intron | 35.0% | |
| TTCAACATTTAAGAGAACCG+AGG | - | chr7_3:2673199-2673218 | Msa1089340:intron | 35.0% | |
| CTCATCGAATCATCATCTAT+TGG | - | chr7_3:2673239-2673258 | Msa1089340:intron | 35.0% | |
| TGATTGAACAGTCCATTTAG+AGG | + | chr7_3:2673694-2673713 | None:intergenic | 35.0% | |
| ! | TTGCATATATTTGAGACCAG+AGG | - | chr7_3:2673785-2673804 | Msa1089340:intron | 35.0% |
| ! | TGCATATATTTGAGACCAGA+GGG | - | chr7_3:2673786-2673805 | Msa1089340:intron | 35.0% |
| AACAATATTGTTAGTGCGGT+TGG | + | chr7_3:2674173-2674192 | None:intergenic | 35.0% | |
| GCACAACAATATTGTTAGTG+CGG | + | chr7_3:2674177-2674196 | None:intergenic | 35.0% | |
| CTTTAATGCATGTACATGTC+GGG | + | chr7_3:2674218-2674237 | None:intergenic | 35.0% | |
| !! | GAAACATTTTGGTCATGGTT+TGG | + | chr7_3:2674307-2674326 | None:intergenic | 35.0% |
| ! | TATAGCTGGTGGAAACATTT+TGG | + | chr7_3:2674318-2674337 | None:intergenic | 35.0% |
| ATTCAAACAAGTATAGCTGG+TGG | + | chr7_3:2674329-2674348 | None:intergenic | 35.0% | |
| ! | TTCAACCTGATCATGCATTT+TGG | + | chr7_3:2674374-2674393 | None:intergenic | 35.0% |
| TACAAAGCTGACAAGAATGT+TGG | - | chr7_3:2674523-2674542 | Msa1089340:intron | 35.0% | |
| ACTTGTAGAACACATCATTG+TGG | - | chr7_3:2674583-2674602 | Msa1089340:intron | 35.0% | |
| TGGAGAACACAATCAAATAG+TGG | + | chr7_3:2674648-2674667 | None:intergenic | 35.0% | |
| AGATTGACATAAGAGTGGTG+GGG | + | chr7_3:2671071-2671090 | None:intergenic | 40.0% | |
| AAACTGTGCATGTGTTTAGC+GGG | + | chr7_3:2671163-2671182 | None:intergenic | 40.0% | |
| GAAACTGTGCATGTGTTTAG+CGG | + | chr7_3:2671164-2671183 | None:intergenic | 40.0% | |
| CTAAATCCACCCAATTTCCA+AGG | - | chr7_3:2671192-2671211 | Msa1089340:three_prime_UTR | 40.0% | |
| AGAGAGACACCTTGGAAATT+GGG | + | chr7_3:2671204-2671223 | None:intergenic | 40.0% | |
| AAGAGAGACACCTTGGAAAT+TGG | + | chr7_3:2671205-2671224 | None:intergenic | 40.0% | |
| ! | GTAAGCTTTCCATTTCAGGT+AGG | - | chr7_3:2671413-2671432 | Msa1089340:CDS | 40.0% |
| TGGATTAACATTTCAGCCCT+TGG | + | chr7_3:2671818-2671837 | None:intergenic | 40.0% | |
| AGGGCTGAAATGTTAATCCA+TGG | - | chr7_3:2671818-2671837 | Msa1089340:intron | 40.0% | |
| AAGTGATTGTTGTAAACCCG+GGG | + | chr7_3:2671922-2671941 | None:intergenic | 40.0% | |
| ! | TCAACATCCCACCATGTTTT+CGG | - | chr7_3:2672252-2672271 | Msa1089340:intron | 40.0% |
| !! | ATGATGGACATCCGAAAACA+TGG | + | chr7_3:2672266-2672285 | None:intergenic | 40.0% |
| ! | ATGTTTTCGGATGTCCATCA+TGG | - | chr7_3:2672265-2672284 | Msa1089340:intron | 40.0% |
| ! | TGTTTTCGGATGTCCATCAT+GGG | - | chr7_3:2672266-2672285 | Msa1089340:intron | 40.0% |
| ! | GAAGCTCAAACTTTTGGACA+TGG | + | chr7_3:2672325-2672344 | None:intergenic | 40.0% |
| AACTCAGTGCTTTACTGTTG+TGG | + | chr7_3:2672374-2672393 | None:intergenic | 40.0% | |
| TCATCTTCAACTCAATCGAC+TGG | - | chr7_3:2672414-2672433 | Msa1089340:intron | 40.0% | |
| AAAACACCAGTTGACAAGCA+CGG | + | chr7_3:2672485-2672504 | None:intergenic | 40.0% | |
| ! | GCACCGACACTTCAAATTAA+AGG | - | chr7_3:2672575-2672594 | Msa1089340:intron | 40.0% |
| AGACATCCATACACAGACAA+CGG | + | chr7_3:2672700-2672719 | None:intergenic | 40.0% | |
| TATATAGCCAGTGCTAACCA+AGG | + | chr7_3:2672801-2672820 | None:intergenic | 40.0% | |
| !! | GGTTAGCACTGGCTATATAT+TGG | - | chr7_3:2672802-2672821 | Msa1089340:intron | 40.0% |
| GCAAGATATCTCATCGTTGA+TGG | - | chr7_3:2672984-2673003 | Msa1089340:intron | 40.0% | |
| ACACATACACAGCAGACAAT+GGG | + | chr7_3:2673038-2673057 | None:intergenic | 40.0% | |
| TACACATACACAGCAGACAA+TGG | + | chr7_3:2673039-2673058 | None:intergenic | 40.0% | |
| TTTGCACTGTGTTGGATACT+AGG | - | chr7_3:2673143-2673162 | Msa1089340:intron | 40.0% | |
| GTAGAAGAACAATGCTGGAA+AGG | + | chr7_3:2673176-2673195 | None:intergenic | 40.0% | |
| TTCCAGCATTGTTCTTCTAC+TGG | - | chr7_3:2673176-2673195 | Msa1089340:intron | 40.0% | |
| AACCAGTAGAAGAACAATGC+TGG | + | chr7_3:2673181-2673200 | None:intergenic | 40.0% | |
| AGAACCGAGGAGAACAATAT+GGG | - | chr7_3:2673212-2673231 | Msa1089340:intron | 40.0% | |
| ACATCCCATATTGTTCTCCT+CGG | + | chr7_3:2673219-2673238 | None:intergenic | 40.0% | |
| ! | TGTTCTAGTGGATGGAAGTA+TGG | - | chr7_3:2673335-2673354 | Msa1089340:intron | 40.0% |
| TCAATATCAACATGCTGGAG+TGG | + | chr7_3:2673536-2673555 | None:intergenic | 40.0% | |
| TGTCGATGTCTAGTCCTTTA+CGG | - | chr7_3:2673725-2673744 | Msa1089340:five_prime_UTR | 40.0% | |
| ! | TGACACTTGTTGCTAGTTAC+AGG | - | chr7_3:2673891-2673910 | Msa1089340:intron | 40.0% |
| AAATTCTGACCAGCTTCTTC+AGG | - | chr7_3:2673933-2673952 | Msa1089340:intron | 40.0% | |
| AATTCTGACCAGCTTCTTCA+GGG | - | chr7_3:2673934-2673953 | Msa1089340:intron | 40.0% | |
| TATCAGATGGCAAGGGAATT+CGG | + | chr7_3:2673984-2674003 | None:intergenic | 40.0% | |
| AATTCCCTTGCCATCTGATA+TGG | - | chr7_3:2673984-2674003 | Msa1089340:intron | 40.0% | |
| AGCAGTACCATGCTATTATG+AGG | - | chr7_3:2674034-2674053 | Msa1089340:intron | 40.0% | |
| CATGCATTAAAGAGAGCTAG+AGG | - | chr7_3:2674226-2674245 | Msa1089340:intron | 40.0% | |
| ! | GCGAATCAAGCTTTGATTCT+TGG | + | chr7_3:2674285-2674304 | None:intergenic | 40.0% |
| !! | TGGTGGAAACATTTTGGTCA+TGG | + | chr7_3:2674312-2674331 | None:intergenic | 40.0% |
| GGAATCCAAAATGCATGATC+AGG | - | chr7_3:2674366-2674385 | Msa1089340:intron | 40.0% | |
| GATGCTTCTGATGTCACATA+CGG | - | chr7_3:2674406-2674425 | Msa1089340:intron | 40.0% | |
| ATGTCACATACGGATCTCAT+AGG | - | chr7_3:2674416-2674435 | Msa1089340:intron | 40.0% | |
| TGAAATGTTTCAGCAGCAAC+AGG | - | chr7_3:2674441-2674460 | Msa1089340:intron | 40.0% | |
| TTCTACAAGTCTCTCACATG+CGG | + | chr7_3:2674573-2674592 | None:intergenic | 40.0% | |
| TGTAGAACACATCATTGTGG+TGG | - | chr7_3:2674586-2674605 | Msa1089340:intron | 40.0% | |
| TGTTCTCCAATCTCTACCAT+TGG | - | chr7_3:2674659-2674678 | Msa1089340:intron | 40.0% | |
| GTTCTCCAATCTCTACCATT+GGG | - | chr7_3:2674660-2674679 | Msa1089340:intron | 40.0% | |
| AACTGTGCATGTGTTTAGCG+GGG | + | chr7_3:2671162-2671181 | None:intergenic | 45.0% | |
| !! | ATGGAGGGTAAGTTGATCCA+AGG | - | chr7_3:2671798-2671817 | Msa1089340:intron | 45.0% |
| !! | TGGAGGGTAAGTTGATCCAA+GGG | - | chr7_3:2671799-2671818 | Msa1089340:intron | 45.0% |
| ATAGAGGATTGGACGAACCA+TGG | + | chr7_3:2671838-2671857 | None:intergenic | 45.0% | |
| CAATCACTTACGCTAGACCA+CGG | - | chr7_3:2671933-2671952 | Msa1089340:CDS | 45.0% | |
| TACTGCAACGATAATCTGGC+AGG | - | chr7_3:2672099-2672118 | Msa1089340:intron | 45.0% | |
| TGGACATCCGAAAACATGGT+GGG | + | chr7_3:2672262-2672281 | None:intergenic | 45.0% | |
| ATGGACATCCGAAAACATGG+TGG | + | chr7_3:2672263-2672282 | None:intergenic | 45.0% | |
| ! | GTTTTCGGATGTCCATCATG+GGG | - | chr7_3:2672267-2672286 | Msa1089340:intron | 45.0% |
| TCAGAAGATCTTCCCCATGA+TGG | + | chr7_3:2672282-2672301 | None:intergenic | 45.0% | |
| AAAGTGGAAGCTCTACCACA+AGG | - | chr7_3:2672345-2672364 | Msa1089340:intron | 45.0% | |
| TTACTGTTGTGGCATCCTTG+TGG | + | chr7_3:2672363-2672382 | None:intergenic | 45.0% | |
| CATACACAGACAACGGACAT+TGG | + | chr7_3:2672693-2672712 | None:intergenic | 45.0% | |
| CAATGTCCGTTGTCTGTGTA+TGG | - | chr7_3:2672691-2672710 | Msa1089340:CDS | 45.0% | |
| ATACTAATCAAATGGGGGCG+TGG | + | chr7_3:2673124-2673143 | None:intergenic | 45.0% | |
| GAGAACCGAGGAGAACAATA+TGG | - | chr7_3:2673211-2673230 | Msa1089340:intron | 45.0% | |
| ATCCATTAGTGGAGGATGGA+CGG | + | chr7_3:2673279-2673298 | None:intergenic | 45.0% | |
| TGTGATCCATTAGTGGAGGA+TGG | + | chr7_3:2673283-2673302 | None:intergenic | 45.0% | |
| ! | GATTGGCTGTGATCCATTAG+TGG | + | chr7_3:2673290-2673309 | None:intergenic | 45.0% |
| TATGCTGATCCAGGCTACAA+TGG | - | chr7_3:2673417-2673436 | Msa1089340:intron | 45.0% | |
| GGCCTACTTTCTGCTTCATA+TGG | - | chr7_3:2673438-2673457 | Msa1089340:intron | 45.0% | |
| GGCCATATGAAGCAGAAAGT+AGG | + | chr7_3:2673443-2673462 | None:intergenic | 45.0% | |
| CAACATGCTGGAGTGGAATA+CGG | + | chr7_3:2673529-2673548 | None:intergenic | 45.0% | |
| TTAGGAGTAGATGTTGCAGC+TGG | - | chr7_3:2673641-2673660 | Msa1089340:CDS | 45.0% | |
| CAGAAGCAGTTTCCATTAGC+TGG | + | chr7_3:2673960-2673979 | None:intergenic | 45.0% | |
| TCTGCCATATCAGATGGCAA+GGG | + | chr7_3:2673991-2674010 | None:intergenic | 45.0% | |
| TTCTGCCATATCAGATGGCA+AGG | + | chr7_3:2673992-2674011 | None:intergenic | 45.0% | |
| GGTTCTTCTGCCATATCAGA+TGG | + | chr7_3:2673997-2674016 | None:intergenic | 45.0% | |
| GTCTTCGCCTCATAATAGCA+TGG | + | chr7_3:2674044-2674063 | None:intergenic | 45.0% | |
| TTATGAGGCGAAGACAGTGT+CGG | - | chr7_3:2674049-2674068 | Msa1089340:intron | 45.0% | |
| ! | TTAAAGAGAGCTAGAGGTGC+CGG | - | chr7_3:2674232-2674251 | Msa1089340:intron | 45.0% |
| AGCAACAGGAGTTAGAGTTC+AGG | - | chr7_3:2674455-2674474 | Msa1089340:intron | 45.0% | |
| AGTTACCCTTCTTCTCAGAC+TGG | - | chr7_3:2674484-2674503 | Msa1089340:intron | 45.0% | |
| TCCTTCCAGTCTGAGAAGAA+GGG | + | chr7_3:2674492-2674511 | None:intergenic | 45.0% | |
| TTCCTTCCAGTCTGAGAAGA+AGG | + | chr7_3:2674493-2674512 | None:intergenic | 45.0% | |
| GACTTCCCAATGGTAGAGAT+TGG | + | chr7_3:2674668-2674687 | None:intergenic | 45.0% | |
| TACCATTGGGAAGTCATCCT+TGG | - | chr7_3:2674673-2674692 | Msa1089340:intron | 45.0% | |
| TGTGACTCTATCGTAGTCGT+TGG | - | chr7_3:2674932-2674951 | Msa1089340:five_prime_UTR | 45.0% | |
| CGTAGTCGTTGGATTGAGAT+TGG | - | chr7_3:2674943-2674962 | Msa1089340:five_prime_UTR | 45.0% | |
| TCGTTGGATTGAGATTGGCA+GGG | - | chr7_3:2674948-2674967 | Msa1089340:five_prime_UTR | 45.0% | |
| !!! | ATAATTCATTAAATTTTAAA+AGG | + | chr7_3:2673580-2673599 | None:intergenic | 5.0% |
| GAGACACCTTGGAAATTGGG+TGG | + | chr7_3:2671201-2671220 | None:intergenic | 50.0% | |
| ! | TCGACTGGCTCATCACAATC+AGG | - | chr7_3:2672429-2672448 | Msa1089340:intron | 50.0% |
| GTGATTCCGTGCTTGTCAAC+TGG | - | chr7_3:2672476-2672495 | Msa1089340:CDS | 50.0% | |
| CACTAACACGTGTCTCACAC+CGG | + | chr7_3:2672606-2672625 | None:intergenic | 50.0% | |
| AGACACGTGTTAGTGTCCGA+AGG | - | chr7_3:2672611-2672630 | Msa1089340:intron | 50.0% | |
| ! | CTATGTGAGTCGGTGTCCTT+CGG | + | chr7_3:2672630-2672649 | None:intergenic | 50.0% |
| ATAGCCAGTGCTAACCAAGG+AGG | + | chr7_3:2672798-2672817 | None:intergenic | 50.0% | |
| TGGCTGTGATCCATTAGTGG+AGG | + | chr7_3:2673287-2673306 | None:intergenic | 50.0% | |
| TGTAGCCTGGATCAGCATAG+TGG | + | chr7_3:2673416-2673435 | None:intergenic | 50.0% | |
| GAAAGTAGGCCATTGTAGCC+TGG | + | chr7_3:2673429-2673448 | None:intergenic | 50.0% | |
| CTAGACATCGACAGAGAGCA+CGG | + | chr7_3:2673718-2673737 | None:intergenic | 50.0% | |
| AGCTGAACTAGTAGTCCCTC+TGG | + | chr7_3:2673804-2673823 | None:intergenic | 50.0% | |
| TATGAGGCGAAGACAGTGTC+GGG | - | chr7_3:2674050-2674069 | Msa1089340:intron | 50.0% | |
| TGTCGGGACTCGTGAAGATA+TGG | + | chr7_3:2674202-2674221 | None:intergenic | 50.0% | |
| ! | AGCATTGAGAAAACGGCCAC+CGG | + | chr7_3:2674254-2674273 | None:intergenic | 50.0% |
| ACCCTTCTTCTCAGACTGGA+AGG | - | chr7_3:2674488-2674507 | Msa1089340:intron | 50.0% | |
| ACAAGTCTCTCACATGCGGA+CGG | + | chr7_3:2674569-2674588 | None:intergenic | 50.0% | |
| AGCCAAGGATGACTTCCCAA+TGG | + | chr7_3:2674678-2674697 | None:intergenic | 50.0% | |
| GTCGTTGGATTGAGATTGGC+AGG | - | chr7_3:2674947-2674966 | Msa1089340:five_prime_UTR | 50.0% | |
| TGGATTGAGATTGGCAGGGA+CGG | - | chr7_3:2674952-2674971 | Msa1089340:five_prime_UTR | 50.0% | |
| !! | AGGAATCAAACTCGGTGCCC+CGG | - | chr7_3:2671902-2671921 | Msa1089340:CDS | 55.0% |
| TCACTTACGCTAGACCACGG+TGG | - | chr7_3:2671936-2671955 | Msa1089340:CDS | 55.0% | |
| CTAGACCACGGTGGTACTCA+CGG | - | chr7_3:2671945-2671964 | Msa1089340:CDS | 55.0% | |
| TAGACCACGGTGGTACTCAC+GGG | - | chr7_3:2671946-2671965 | Msa1089340:CDS | 55.0% | |
| AAATCCCGTGAGTACCACCG+TGG | + | chr7_3:2671953-2671972 | None:intergenic | 55.0% | |
| CCAGTGCTAACCAAGGAGGT+AGG | + | chr7_3:2672794-2672813 | None:intergenic | 55.0% | |
| CCTACCTCCTTGGTTAGCAC+TGG | - | chr7_3:2672791-2672810 | Msa1089340:intron | 55.0% | |
| GGAGGATGGACGGTGAGATT+TGG | + | chr7_3:2673269-2673288 | None:intergenic | 55.0% | |
| CACCGTCCATCCTCCACTAA+TGG | - | chr7_3:2673274-2673293 | Msa1089340:intron | 55.0% | |
| GCACTCCACTATGCTGATCC+AGG | - | chr7_3:2673408-2673427 | Msa1089340:intron | 55.0% | |
| TTAGCTGGCCCTGAAGAAGC+TGG | + | chr7_3:2673945-2673964 | None:intergenic | 55.0% | |
| GCTTCTTCAGGGCCAGCTAA+TGG | - | chr7_3:2673945-2673964 | Msa1089340:intron | 55.0% | |
| CTCACATGCGGACGGATAGT+CGG | + | chr7_3:2674561-2674580 | None:intergenic | 55.0% | |
| !! | GGAATCAAACTCGGTGCCCC+GGG | - | chr7_3:2671903-2671922 | Msa1089340:CDS | 60.0% |
| !! | AAGAGAGCTAGAGGTGCCGG+TGG | - | chr7_3:2674235-2674254 | Msa1089340:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 2670943 | 2674997 | 2670943 | ID=Msa1089340;Name=Msa1089340 |
| chr7_3 | mRNA | 2670943 | 2674997 | 2670943 | ID=Msa1089340-mRNA-1;Parent=Msa1089340;Name=Msa1089340-mRNA-1;_AED=0.23;_eAED=0.23;_QI=302|1|1|1|0.8|0.66|6|418|345 |
| chr7_3 | exon | 2670943 | 2671741 | 2670943 | ID=Msa1089340-mRNA-1:exon:1149;Parent=Msa1089340-mRNA-1 |
| chr7_3 | exon | 2671827 | 2672027 | 2671827 | ID=Msa1089340-mRNA-1:exon:1148;Parent=Msa1089340-mRNA-1 |
| chr7_3 | exon | 2672467 | 2672541 | 2672467 | ID=Msa1089340-mRNA-1:exon:1147;Parent=Msa1089340-mRNA-1 |
| chr7_3 | exon | 2672627 | 2672775 | 2672627 | ID=Msa1089340-mRNA-1:exon:1146;Parent=Msa1089340-mRNA-1 |
| chr7_3 | exon | 2673490 | 2673752 | 2673490 | ID=Msa1089340-mRNA-1:exon:1145;Parent=Msa1089340-mRNA-1 |
| chr7_3 | exon | 2674727 | 2674997 | 2674727 | ID=Msa1089340-mRNA-1:exon:1144;Parent=Msa1089340-mRNA-1 |
| chr7_3 | five_prime_UTR | 2674727 | 2674997 | 2674727 | ID=Msa1089340-mRNA-1:five_prime_utr;Parent=Msa1089340-mRNA-1 |
| chr7_3 | five_prime_UTR | 2673722 | 2673752 | 2673722 | ID=Msa1089340-mRNA-1:five_prime_utr;Parent=Msa1089340-mRNA-1 |
| chr7_3 | CDS | 2673490 | 2673721 | 2673490 | ID=Msa1089340-mRNA-1:cds;Parent=Msa1089340-mRNA-1 |
| chr7_3 | CDS | 2672627 | 2672775 | 2672627 | ID=Msa1089340-mRNA-1:cds;Parent=Msa1089340-mRNA-1 |
| chr7_3 | CDS | 2672467 | 2672541 | 2672467 | ID=Msa1089340-mRNA-1:cds;Parent=Msa1089340-mRNA-1 |
| chr7_3 | CDS | 2671827 | 2672027 | 2671827 | ID=Msa1089340-mRNA-1:cds;Parent=Msa1089340-mRNA-1 |
| chr7_3 | CDS | 2671361 | 2671741 | 2671361 | ID=Msa1089340-mRNA-1:cds;Parent=Msa1089340-mRNA-1 |
| chr7_3 | three_prime_UTR | 2670943 | 2671360 | 2670943 | ID=Msa1089340-mRNA-1:three_prime_utr;Parent=Msa1089340-mRNA-1 |
| Gene Sequence |
| Protein sequence |
