Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0827460 | XP_013458995.1 | 99.383 | 162 | 1 | 0 | 1 | 162 | 209 | 370 | 4.93e-109 | 325 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0827460 | sp|Q8L7A4|AGD11_ARATH | 83.951 | 162 | 26 | 0 | 1 | 162 | 224 | 385 | 8.11e-95 | 282 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0827460 | A0A072UVE7 | 99.383 | 162 | 1 | 0 | 1 | 162 | 209 | 370 | 2.36e-109 | 325 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0444080 | Msa0827460 | 0.837310 | 5.604318e-57 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0827460 | MtrunA17_Chr3g0083541 | 99.383 | 162 | 1 | 0 | 1 | 162 | 239 | 400 | 1.21e-112 | 325 |
| Msa0827460 | MtrunA17_Chr8g0352751 | 83.951 | 162 | 26 | 0 | 1 | 162 | 1 | 162 | 2.82e-98 | 280 |
| Msa0827460 | MtrunA17_Chr8g0380381 | 54.938 | 162 | 73 | 0 | 1 | 162 | 85 | 246 | 1.99e-64 | 197 |
| Msa0827460 | MtrunA17_Chr2g0292461 | 52.469 | 162 | 77 | 0 | 1 | 162 | 168 | 329 | 3.23e-60 | 189 |
| Msa0827460 | MtrunA17_Chr2g0280981 | 44.720 | 161 | 80 | 2 | 2 | 158 | 1 | 156 | 4.49e-41 | 135 |
| Msa0827460 | MtrunA17_Chr3g0111361 | 44.444 | 162 | 81 | 2 | 1 | 158 | 1 | 157 | 5.15e-41 | 135 |
| Msa0827460 | MtrunA17_Chr8g0393081 | 41.250 | 160 | 93 | 1 | 1 | 160 | 17 | 175 | 2.30e-40 | 134 |
| Msa0827460 | MtrunA17_Chr2g0290631 | 45.860 | 157 | 84 | 1 | 1 | 156 | 1 | 157 | 1.12e-37 | 127 |
| Msa0827460 | MtrunA17_Chr1g0160811 | 44.444 | 153 | 83 | 2 | 5 | 156 | 6 | 157 | 2.10e-37 | 126 |
| Msa0827460 | MtrunA17_Chr6g0478401 | 39.375 | 160 | 96 | 1 | 1 | 160 | 13 | 171 | 2.91e-34 | 118 |
| Msa0827460 | MtrunA17_Chr4g0043861 | 39.394 | 165 | 91 | 2 | 1 | 161 | 1 | 160 | 7.42e-34 | 117 |
| Msa0827460 | MtrunA17_Chr1g0147471 | 45.000 | 60 | 32 | 1 | 27 | 85 | 2 | 61 | 8.86e-12 | 57.4 |
| Msa0827460 | MtrunA17_Chr8g0350031 | 36.145 | 83 | 51 | 2 | 6 | 86 | 4 | 86 | 5.50e-11 | 57.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0827460 | AT3G07940.1 | 83.951 | 162 | 26 | 0 | 1 | 162 | 224 | 385 | 8.25e-96 | 282 |
| Msa0827460 | AT4G21160.2 | 56.173 | 162 | 71 | 0 | 1 | 162 | 176 | 337 | 9.35e-66 | 204 |
| Msa0827460 | AT4G21160.3 | 56.173 | 162 | 71 | 0 | 1 | 162 | 176 | 337 | 9.35e-66 | 204 |
| Msa0827460 | AT4G21160.1 | 56.173 | 162 | 71 | 0 | 1 | 162 | 176 | 337 | 9.35e-66 | 204 |
| Msa0827460 | AT4G21160.4 | 56.173 | 162 | 71 | 0 | 1 | 162 | 176 | 337 | 9.35e-66 | 204 |
| Msa0827460 | AT4G05330.2 | 56.790 | 162 | 70 | 0 | 1 | 162 | 140 | 301 | 1.04e-65 | 202 |
| Msa0827460 | AT4G05330.3 | 56.790 | 162 | 70 | 0 | 1 | 162 | 175 | 336 | 3.52e-65 | 202 |
| Msa0827460 | AT4G05330.1 | 56.790 | 162 | 70 | 0 | 1 | 162 | 175 | 336 | 3.52e-65 | 202 |
| Msa0827460 | AT1G70790.3 | 44.444 | 153 | 84 | 1 | 5 | 156 | 6 | 158 | 2.75e-40 | 134 |
| Msa0827460 | AT1G70790.2 | 44.444 | 153 | 84 | 1 | 5 | 156 | 6 | 158 | 2.75e-40 | 134 |
| Msa0827460 | AT1G70790.1 | 44.444 | 153 | 84 | 1 | 5 | 156 | 6 | 158 | 2.75e-40 | 134 |
| Msa0827460 | AT1G66360.1 | 42.593 | 162 | 92 | 1 | 1 | 161 | 1 | 162 | 4.43e-40 | 133 |
| Msa0827460 | AT1G73580.1 | 42.500 | 160 | 91 | 1 | 1 | 160 | 4 | 162 | 1.29e-39 | 132 |
| Msa0827460 | AT1G70800.1 | 43.590 | 156 | 87 | 1 | 1 | 156 | 10 | 164 | 1.30e-39 | 132 |
| Msa0827460 | AT1G70810.1 | 41.667 | 156 | 90 | 1 | 1 | 156 | 1 | 155 | 2.43e-37 | 126 |
| Msa0827460 | AT5G37740.1 | 41.875 | 160 | 91 | 1 | 1 | 158 | 1 | 160 | 6.24e-37 | 125 |
| Msa0827460 | AT2G01540.1 | 42.484 | 153 | 87 | 1 | 5 | 156 | 6 | 158 | 4.86e-36 | 123 |
| Msa0827460 | AT5G47710.1 | 40.881 | 159 | 93 | 1 | 1 | 158 | 1 | 159 | 4.29e-35 | 120 |
| Msa0827460 | AT5G47710.2 | 40.881 | 159 | 93 | 1 | 1 | 158 | 1 | 159 | 4.29e-35 | 120 |
| Msa0827460 | AT5G47710.3 | 40.881 | 159 | 93 | 1 | 1 | 158 | 1 | 159 | 4.29e-35 | 120 |
| Msa0827460 | AT5G47710.4 | 40.881 | 159 | 93 | 1 | 1 | 158 | 1 | 159 | 4.29e-35 | 120 |
| Msa0827460 | AT1G48590.4 | 39.024 | 164 | 91 | 2 | 1 | 160 | 6 | 164 | 4.43e-35 | 120 |
| Msa0827460 | AT1G48590.1 | 39.024 | 164 | 91 | 2 | 1 | 160 | 6 | 164 | 4.43e-35 | 120 |
| Msa0827460 | AT1G48590.2 | 39.024 | 164 | 91 | 2 | 1 | 160 | 37 | 195 | 1.00e-34 | 120 |
| Msa0827460 | AT1G23140.1 | 37.888 | 161 | 99 | 1 | 1 | 161 | 1 | 160 | 2.39e-34 | 118 |
| Msa0827460 | AT5G37740.2 | 39.412 | 170 | 91 | 2 | 1 | 158 | 1 | 170 | 1.03e-33 | 117 |
| Msa0827460 | AT3G17980.1 | 36.585 | 164 | 95 | 2 | 1 | 160 | 13 | 171 | 1.03e-33 | 117 |
| Msa0827460 | AT1G70790.4 | 42.017 | 119 | 68 | 1 | 39 | 156 | 3 | 121 | 2.15e-24 | 92.8 |
| Msa0827460 | AT1G48590.3 | 30.488 | 164 | 73 | 3 | 1 | 160 | 37 | 163 | 3.06e-19 | 80.1 |
| Msa0827460 | AT3G07940.2 | 86.486 | 37 | 5 | 0 | 1 | 37 | 224 | 260 | 5.42e-15 | 70.9 |
| Msa0827460 | AT1G03370.1 | 37.778 | 90 | 55 | 1 | 8 | 96 | 3 | 92 | 5.46e-13 | 66.2 |
| Msa0827460 | AT1G03370.2 | 37.778 | 90 | 55 | 1 | 8 | 96 | 3 | 92 | 7.93e-13 | 65.5 |
Find 31 sgRNAs with CRISPR-Local
Find 110 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTAAGGTTAATGTAGTTAA+AGG | 0.211722 | 5_3:+68740065 | Msa0827460:CDS |
| TGAATTTGTTGGATTGATTA+AGG | 0.287189 | 5_3:+68740049 | Msa0827460:CDS |
| AGTCAATGCAGCTTGGAAAA+TGG | 0.292719 | 5_3:+68740689 | Msa0827460:CDS |
| AGAACAATTTAAATCCTGTT+TGG | 0.340329 | 5_3:+68740263 | Msa0827460:CDS |
| GCAGGTATGGTTGAATTTGT+TGG | 0.378256 | 5_3:+68740038 | Msa0827460:exon |
| CCTTATGTCATCCTTTCTCT+TGG | 0.379448 | 5_3:+68740125 | Msa0827460:CDS |
| GTCAATGCAGCTTGGAAAAT+GGG | 0.386273 | 5_3:+68740690 | Msa0827460:CDS |
| ATGAGAGAGATAGGAGTAAA+GGG | 0.387504 | 5_3:+68740859 | Msa0827460:three_prime_UTR |
| ACTCAATAGATGAGAGAGAT+AGG | 0.395457 | 5_3:+68740850 | Msa0827460:exon |
| TTAAGAGGAGGGATGTTCTC+AGG | 0.396970 | 5_3:-68740310 | None:intergenic |
| TCTCTCATCTATTGAGTAAG+AGG | 0.407997 | 5_3:-68740844 | None:intergenic |
| TCTCAGGGATTGACAGCATT+AGG | 0.419633 | 5_3:-68740294 | None:intergenic |
| GATGAGAGAGATAGGAGTAA+AGG | 0.422637 | 5_3:+68740858 | Msa0827460:exon |
| ATTAGGCTTTCATTCCAAAC+AGG | 0.437169 | 5_3:-68740277 | None:intergenic |
| CCCTATTTACTGTTATAGGC+AGG | 0.450636 | 5_3:+68740020 | None:intergenic |
| GGAATAATATCTCTTGAAGA+AGG | 0.465885 | 5_3:+68740745 | Msa0827460:CDS |
| TTTACTGTTATAGGCAGGTA+TGG | 0.466561 | 5_3:+68740025 | None:intergenic |
| AAGGTTGAAACTTATCAATA+AGG | 0.480735 | 5_3:-68741052 | None:intergenic |
| TGAAGAAGGGAAAGTGAGAC+AGG | 0.489048 | 5_3:+68740759 | Msa0827460:CDS |
| CCAAGAGAAAGGATGACATA+AGG | 0.500819 | 5_3:-68740125 | None:intergenic |
| TCACTATATCTCTGATAGCT+AGG | 0.520516 | 5_3:-68740094 | None:intergenic |
| CAAGAGAAAGGATGACATAA+GGG | 0.522273 | 5_3:-68740124 | None:intergenic |
| GACAATACACTTGTGAAAGA+TGG | 0.535420 | 5_3:+68740724 | Msa0827460:CDS |
| ATCATGGAGTCAATGCAGCT+TGG | 0.540788 | 5_3:+68740682 | Msa0827460:CDS |
| TAAGAGGAGGGATGTTCTCA+GGG | 0.542262 | 5_3:-68740309 | None:intergenic |
| TCACTTGGTGACCAAGAGAA+AGG | 0.546656 | 5_3:-68740136 | None:intergenic |
| ATATGAGAAATCATCAATCA+TGG | 0.553492 | 5_3:+68740666 | Msa0827460:CDS |
| GAATAATATCTCTTGAAGAA+GGG | 0.592669 | 5_3:+68740746 | Msa0827460:CDS |
| CTTGGAAAATGGGTAGCAAG+TGG | 0.649585 | 5_3:+68740700 | Msa0827460:CDS |
| AGGCTACAAAATGTTGAGAG+AGG | 0.650552 | 5_3:+68740793 | Msa0827460:CDS |
| TGAGACAGGAAATCTCATTG+AGG | 0.699747 | 5_3:+68740773 | Msa0827460:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTTTTTAATCTACATA+AGG | - | chr5_3:68741000-68741019 | None:intergenic | 10.0% |
| !!! | TATTTTTTTTAATCTACATA+AGG | - | chr5_3:68741000-68741019 | None:intergenic | 10.0% |
| !!! | AATTTGCAAAAATTACATTT+TGG | + | chr5_3:68740892-68740911 | Msa0827460:three_prime_UTR | 15.0% |
| !!! | AATTTGCAAAAATTACATTT+TGG | + | chr5_3:68740892-68740911 | Msa0827460:three_prime_UTR | 15.0% |
| !! | ATTAAGGTTAATGTAGTTAA+AGG | + | chr5_3:68740065-68740084 | Msa0827460:CDS | 20.0% |
| !!! | ATTCAACTTACTATTTTAAG+AGG | - | chr5_3:68740328-68740347 | None:intergenic | 20.0% |
| !!! | ATTCAAAAATGACGATTTTA+TGG | + | chr5_3:68740597-68740616 | Msa0827460:CDS | 20.0% |
| !!! | TTCAAAAATGACGATTTTAT+GGG | + | chr5_3:68740598-68740617 | Msa0827460:CDS | 20.0% |
| !!! | TTTTTTAATCTACATAAGGA+TGG | - | chr5_3:68740996-68741015 | None:intergenic | 20.0% |
| !!! | ATTATCTCTAAGTGTTTTTT+TGG | + | chr5_3:68741023-68741042 | Msa0827460:three_prime_UTR | 20.0% |
| !! | ATTAAGGTTAATGTAGTTAA+AGG | + | chr5_3:68740065-68740084 | Msa0827460:CDS | 20.0% |
| !!! | ATTCAACTTACTATTTTAAG+AGG | - | chr5_3:68740328-68740347 | None:intergenic | 20.0% |
| !!! | ATTCAAAAATGACGATTTTA+TGG | + | chr5_3:68740597-68740616 | Msa0827460:CDS | 20.0% |
| !!! | TTCAAAAATGACGATTTTAT+GGG | + | chr5_3:68740598-68740617 | Msa0827460:CDS | 20.0% |
| !!! | TTTTTTAATCTACATAAGGA+TGG | - | chr5_3:68740996-68741015 | None:intergenic | 20.0% |
| !!! | ATTATCTCTAAGTGTTTTTT+TGG | + | chr5_3:68741023-68741042 | Msa0827460:three_prime_UTR | 20.0% |
| !!! | TGAATTTGTTGGATTGATTA+AGG | + | chr5_3:68740049-68740068 | Msa0827460:CDS | 25.0% |
| ! | ACTTATCATAATGTTTGCAA+AGG | + | chr5_3:68740185-68740204 | Msa0827460:intron | 25.0% |
| ! | AGAACAATTTAAATCCTGTT+TGG | + | chr5_3:68740263-68740282 | Msa0827460:CDS | 25.0% |
| !!! | AACTTACTATTTTAAGAGGA+GGG | - | chr5_3:68740324-68740343 | None:intergenic | 25.0% |
| ! | CATCATTTGAAAAATAAGCA+TGG | + | chr5_3:68740369-68740388 | Msa0827460:intron | 25.0% |
| ! | TTGAAAAATAAGCATGGAAT+TGG | + | chr5_3:68740375-68740394 | Msa0827460:intron | 25.0% |
| ! | ATATGAGAAATCATCAATCA+TGG | + | chr5_3:68740666-68740685 | Msa0827460:CDS | 25.0% |
| ! | GAATAATATCTCTTGAAGAA+GGG | + | chr5_3:68740746-68740765 | Msa0827460:CDS | 25.0% |
| ! | AAGGTTGAAACTTATCAATA+AGG | - | chr5_3:68741055-68741074 | None:intergenic | 25.0% |
| !!! | TGAATTTGTTGGATTGATTA+AGG | + | chr5_3:68740049-68740068 | Msa0827460:CDS | 25.0% |
| ! | ACTTATCATAATGTTTGCAA+AGG | + | chr5_3:68740185-68740204 | Msa0827460:intron | 25.0% |
| ! | AGAACAATTTAAATCCTGTT+TGG | + | chr5_3:68740263-68740282 | Msa0827460:CDS | 25.0% |
| !!! | AACTTACTATTTTAAGAGGA+GGG | - | chr5_3:68740324-68740343 | None:intergenic | 25.0% |
| ! | CATCATTTGAAAAATAAGCA+TGG | + | chr5_3:68740369-68740388 | Msa0827460:intron | 25.0% |
| ! | TTGAAAAATAAGCATGGAAT+TGG | + | chr5_3:68740375-68740394 | Msa0827460:intron | 25.0% |
| ! | ATATGAGAAATCATCAATCA+TGG | + | chr5_3:68740666-68740685 | Msa0827460:CDS | 25.0% |
| ! | GAATAATATCTCTTGAAGAA+GGG | + | chr5_3:68740746-68740765 | Msa0827460:CDS | 25.0% |
| ! | AAGGTTGAAACTTATCAATA+AGG | - | chr5_3:68741055-68741074 | None:intergenic | 25.0% |
| TTAATATCTGATCTTGCAGT+CGG | + | chr5_3:68740222-68740241 | Msa0827460:intron | 30.0% | |
| !! | CAACTTACTATTTTAAGAGG+AGG | - | chr5_3:68740325-68740344 | None:intergenic | 30.0% |
| AAATGATGTCTCACAGAAAA+TGG | - | chr5_3:68740357-68740376 | None:intergenic | 30.0% | |
| ! | TTACTTCTTAAGCGATGTTT+TGG | + | chr5_3:68740433-68740452 | Msa0827460:intron | 30.0% |
| !!! | AATTTTGGCTCATTCAAAAG+TGG | - | chr5_3:68740461-68740480 | None:intergenic | 30.0% |
| GGAATAATATCTCTTGAAGA+AGG | + | chr5_3:68740745-68740764 | Msa0827460:CDS | 30.0% | |
| TTAATATCTGATCTTGCAGT+CGG | + | chr5_3:68740222-68740241 | Msa0827460:intron | 30.0% | |
| !! | CAACTTACTATTTTAAGAGG+AGG | - | chr5_3:68740325-68740344 | None:intergenic | 30.0% |
| AAATGATGTCTCACAGAAAA+TGG | - | chr5_3:68740357-68740376 | None:intergenic | 30.0% | |
| ! | TTACTTCTTAAGCGATGTTT+TGG | + | chr5_3:68740433-68740452 | Msa0827460:intron | 30.0% |
| !!! | AATTTTGGCTCATTCAAAAG+TGG | - | chr5_3:68740461-68740480 | None:intergenic | 30.0% |
| GGAATAATATCTCTTGAAGA+AGG | + | chr5_3:68740745-68740764 | Msa0827460:CDS | 30.0% | |
| TCACTATATCTCTGATAGCT+AGG | - | chr5_3:68740097-68740116 | None:intergenic | 35.0% | |
| CAAGAGAAAGGATGACATAA+GGG | - | chr5_3:68740127-68740146 | None:intergenic | 35.0% | |
| ATTAGGCTTTCATTCCAAAC+AGG | - | chr5_3:68740280-68740299 | None:intergenic | 35.0% | |
| !!! | TAAGCATGGAATTGGTCTTT+TGG | + | chr5_3:68740383-68740402 | Msa0827460:intron | 35.0% |
| ! | TACACCTCTAGCATCAATTT+TGG | - | chr5_3:68740476-68740495 | None:intergenic | 35.0% |
| AGAAATCGAACGCAAACTAT+AGG | - | chr5_3:68740510-68740529 | None:intergenic | 35.0% | |
| TCGTATACAATCTGCATGTA+AGG | - | chr5_3:68740568-68740587 | None:intergenic | 35.0% | |
| ! | AAATGACGATTTTATGGGAG+AGG | + | chr5_3:68740603-68740622 | Msa0827460:CDS | 35.0% |
| GACAATACACTTGTGAAAGA+TGG | + | chr5_3:68740724-68740743 | Msa0827460:CDS | 35.0% | |
| TCTCTCATCTATTGAGTAAG+AGG | - | chr5_3:68740847-68740866 | None:intergenic | 35.0% | |
| ACTCAATAGATGAGAGAGAT+AGG | + | chr5_3:68740850-68740869 | Msa0827460:exon | 35.0% | |
| ATGAGAGAGATAGGAGTAAA+GGG | + | chr5_3:68740859-68740878 | Msa0827460:three_prime_UTR | 35.0% | |
| ! | GTCTGTTTTCACAAGCAAAA+AGG | - | chr5_3:68741074-68741093 | None:intergenic | 35.0% |
| TCACTATATCTCTGATAGCT+AGG | - | chr5_3:68740097-68740116 | None:intergenic | 35.0% | |
| CAAGAGAAAGGATGACATAA+GGG | - | chr5_3:68740127-68740146 | None:intergenic | 35.0% | |
| ATTAGGCTTTCATTCCAAAC+AGG | - | chr5_3:68740280-68740299 | None:intergenic | 35.0% | |
| !!! | TAAGCATGGAATTGGTCTTT+TGG | + | chr5_3:68740383-68740402 | Msa0827460:intron | 35.0% |
| ! | TACACCTCTAGCATCAATTT+TGG | - | chr5_3:68740476-68740495 | None:intergenic | 35.0% |
| AGAAATCGAACGCAAACTAT+AGG | - | chr5_3:68740510-68740529 | None:intergenic | 35.0% | |
| TCGTATACAATCTGCATGTA+AGG | - | chr5_3:68740568-68740587 | None:intergenic | 35.0% | |
| ! | AAATGACGATTTTATGGGAG+AGG | + | chr5_3:68740603-68740622 | Msa0827460:CDS | 35.0% |
| GACAATACACTTGTGAAAGA+TGG | + | chr5_3:68740724-68740743 | Msa0827460:CDS | 35.0% | |
| TCTCTCATCTATTGAGTAAG+AGG | - | chr5_3:68740847-68740866 | None:intergenic | 35.0% | |
| ACTCAATAGATGAGAGAGAT+AGG | + | chr5_3:68740850-68740869 | Msa0827460:exon | 35.0% | |
| ATGAGAGAGATAGGAGTAAA+GGG | + | chr5_3:68740859-68740878 | Msa0827460:three_prime_UTR | 35.0% | |
| ! | GTCTGTTTTCACAAGCAAAA+AGG | - | chr5_3:68741074-68741093 | None:intergenic | 35.0% |
| GCAGGTATGGTTGAATTTGT+TGG | + | chr5_3:68740038-68740057 | Msa0827460:exon | 40.0% | |
| CCAAGAGAAAGGATGACATA+AGG | - | chr5_3:68740128-68740147 | None:intergenic | 40.0% | |
| CCTTATGTCATCCTTTCTCT+TGG | + | chr5_3:68740125-68740144 | Msa0827460:CDS | 40.0% | |
| GTGACATGAAAACACTCACT+TGG | - | chr5_3:68740154-68740173 | None:intergenic | 40.0% | |
| TGAGCCAAAATTGATGCTAG+AGG | + | chr5_3:68740469-68740488 | Msa0827460:intron | 40.0% | |
| GTTTGCGTTCGATTTCTTTC+TGG | + | chr5_3:68740513-68740532 | Msa0827460:intron | 40.0% | |
| ! | GCTTTTGCTGCTGATACTAA+TGG | - | chr5_3:68740646-68740665 | None:intergenic | 40.0% |
| AGTCAATGCAGCTTGGAAAA+TGG | + | chr5_3:68740689-68740708 | Msa0827460:CDS | 40.0% | |
| GTCAATGCAGCTTGGAAAAT+GGG | + | chr5_3:68740690-68740709 | Msa0827460:CDS | 40.0% | |
| TGAGACAGGAAATCTCATTG+AGG | + | chr5_3:68740773-68740792 | Msa0827460:CDS | 40.0% | |
| AGGCTACAAAATGTTGAGAG+AGG | + | chr5_3:68740793-68740812 | Msa0827460:CDS | 40.0% | |
| GATGAGAGAGATAGGAGTAA+AGG | + | chr5_3:68740858-68740877 | Msa0827460:exon | 40.0% | |
| GCAGGTATGGTTGAATTTGT+TGG | + | chr5_3:68740038-68740057 | Msa0827460:exon | 40.0% | |
| CCAAGAGAAAGGATGACATA+AGG | - | chr5_3:68740128-68740147 | None:intergenic | 40.0% | |
| CCTTATGTCATCCTTTCTCT+TGG | + | chr5_3:68740125-68740144 | Msa0827460:CDS | 40.0% | |
| GTGACATGAAAACACTCACT+TGG | - | chr5_3:68740154-68740173 | None:intergenic | 40.0% | |
| TGAGCCAAAATTGATGCTAG+AGG | + | chr5_3:68740469-68740488 | Msa0827460:intron | 40.0% | |
| GTTTGCGTTCGATTTCTTTC+TGG | + | chr5_3:68740513-68740532 | Msa0827460:intron | 40.0% | |
| ! | GCTTTTGCTGCTGATACTAA+TGG | - | chr5_3:68740646-68740665 | None:intergenic | 40.0% |
| AGTCAATGCAGCTTGGAAAA+TGG | + | chr5_3:68740689-68740708 | Msa0827460:CDS | 40.0% | |
| GTCAATGCAGCTTGGAAAAT+GGG | + | chr5_3:68740690-68740709 | Msa0827460:CDS | 40.0% | |
| TGAGACAGGAAATCTCATTG+AGG | + | chr5_3:68740773-68740792 | Msa0827460:CDS | 40.0% | |
| AGGCTACAAAATGTTGAGAG+AGG | + | chr5_3:68740793-68740812 | Msa0827460:CDS | 40.0% | |
| GATGAGAGAGATAGGAGTAA+AGG | + | chr5_3:68740858-68740877 | Msa0827460:exon | 40.0% | |
| ! | TCACTTGGTGACCAAGAGAA+AGG | - | chr5_3:68740139-68740158 | None:intergenic | 45.0% |
| TCTCAGGGATTGACAGCATT+AGG | - | chr5_3:68740297-68740316 | None:intergenic | 45.0% | |
| TAAGAGGAGGGATGTTCTCA+GGG | - | chr5_3:68740312-68740331 | None:intergenic | 45.0% | |
| TTAAGAGGAGGGATGTTCTC+AGG | - | chr5_3:68740313-68740332 | None:intergenic | 45.0% | |
| ATCATGGAGTCAATGCAGCT+TGG | + | chr5_3:68740682-68740701 | Msa0827460:CDS | 45.0% | |
| CTTGGAAAATGGGTAGCAAG+TGG | + | chr5_3:68740700-68740719 | Msa0827460:CDS | 45.0% | |
| TGAAGAAGGGAAAGTGAGAC+AGG | + | chr5_3:68740759-68740778 | Msa0827460:CDS | 45.0% | |
| ! | TCACTTGGTGACCAAGAGAA+AGG | - | chr5_3:68740139-68740158 | None:intergenic | 45.0% |
| TCTCAGGGATTGACAGCATT+AGG | - | chr5_3:68740297-68740316 | None:intergenic | 45.0% | |
| TAAGAGGAGGGATGTTCTCA+GGG | - | chr5_3:68740312-68740331 | None:intergenic | 45.0% | |
| TTAAGAGGAGGGATGTTCTC+AGG | - | chr5_3:68740313-68740332 | None:intergenic | 45.0% | |
| ATCATGGAGTCAATGCAGCT+TGG | + | chr5_3:68740682-68740701 | Msa0827460:CDS | 45.0% | |
| CTTGGAAAATGGGTAGCAAG+TGG | + | chr5_3:68740700-68740719 | Msa0827460:CDS | 45.0% | |
| TGAAGAAGGGAAAGTGAGAC+AGG | + | chr5_3:68740759-68740778 | Msa0827460:CDS | 45.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 68740035 | 68741098 | 68740035 | ID=Msa0827460;Name=Msa0827460 |
| chr5_3 | mRNA | 68740035 | 68741098 | 68740035 | ID=Msa0827460-mRNA-1;Parent=Msa0827460;Name=Msa0827460-mRNA-1;_AED=0.03;_eAED=0.03;_QI=9|1|1|1|1|1|3|240|162 |
| chr5_3 | exon | 68740035 | 68740154 | 68740035 | ID=Msa0827460-mRNA-1:exon:21598;Parent=Msa0827460-mRNA-1 |
| chr5_3 | exon | 68740241 | 68740336 | 68740241 | ID=Msa0827460-mRNA-1:exon:21599;Parent=Msa0827460-mRNA-1 |
| chr5_3 | exon | 68740577 | 68741098 | 68740577 | ID=Msa0827460-mRNA-1:exon:21600;Parent=Msa0827460-mRNA-1 |
| chr5_3 | five_prime_UTR | 68740035 | 68740043 | 68740035 | ID=Msa0827460-mRNA-1:five_prime_utr;Parent=Msa0827460-mRNA-1 |
| chr5_3 | CDS | 68740044 | 68740154 | 68740044 | ID=Msa0827460-mRNA-1:cds;Parent=Msa0827460-mRNA-1 |
| chr5_3 | CDS | 68740241 | 68740336 | 68740241 | ID=Msa0827460-mRNA-1:cds;Parent=Msa0827460-mRNA-1 |
| chr5_3 | CDS | 68740577 | 68740858 | 68740577 | ID=Msa0827460-mRNA-1:cds;Parent=Msa0827460-mRNA-1 |
| chr5_3 | three_prime_UTR | 68740859 | 68741098 | 68740859 | ID=Msa0827460-mRNA-1:three_prime_utr;Parent=Msa0827460-mRNA-1 |
| Gene Sequence |
| Protein sequence |
