Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0444080 | XP_003598626.1 | 96.750 | 400 | 10 | 1 | 1 | 397 | 1 | 400 | 0.0 | 793 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0444080 | sp|Q8L7A4|AGD11_ARATH | 67.448 | 384 | 110 | 4 | 17 | 397 | 14 | 385 | 0.0 | 527 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0444080 | G7IYV8 | 96.750 | 400 | 10 | 1 | 1 | 397 | 1 | 400 | 0.0 | 793 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0015680 | Msa0444080 | 0.802533 | 5.362095e-49 | -8.615850e-47 |
| Msa0057590 | Msa0444080 | 0.812744 | 3.633908e-51 | -8.615850e-47 |
| Msa0065010 | Msa0444080 | 0.800223 | 1.594076e-48 | -8.615850e-47 |
| Msa0108870 | Msa0444080 | 0.804847 | 1.774953e-49 | -8.615850e-47 |
| Msa0126770 | Msa0444080 | 0.816476 | 5.422676e-52 | -8.615850e-47 |
| Msa0171850 | Msa0444080 | 0.811062 | 8.446099e-51 | -8.615850e-47 |
| Msa0174000 | Msa0444080 | 0.807119 | 5.907213e-50 | -8.615850e-47 |
| Msa0177230 | Msa0444080 | 0.801087 | 1.062210e-48 | -8.615850e-47 |
| Msa0221600 | Msa0444080 | 0.816748 | 4.713707e-52 | -8.615850e-47 |
| Msa0229360 | Msa0444080 | 0.801041 | 1.085812e-48 | -8.615850e-47 |
| Msa0236070 | Msa0444080 | 0.802171 | 6.366853e-49 | -8.615850e-47 |
| Msa0384670 | Msa0444080 | 0.817284 | 3.571199e-52 | -8.615850e-47 |
| Msa0396540 | Msa0444080 | 0.832985 | 6.913178e-56 | -8.615850e-47 |
| Msa0413730 | Msa0444080 | 0.811618 | 6.399261e-51 | -8.615850e-47 |
| Msa0419520 | Msa0444080 | 0.801009 | 1.102066e-48 | -8.615850e-47 |
| Msa0439890 | Msa0444080 | 0.816135 | 6.463584e-52 | -8.615850e-47 |
| Msa0444080 | Msa0474700 | 0.815790 | 7.716483e-52 | -8.615850e-47 |
| Msa0444080 | Msa0478580 | 0.803524 | 3.346474e-49 | -8.615850e-47 |
| Msa0444080 | Msa0491540 | 0.849107 | 3.998162e-60 | -8.615850e-47 |
| Msa0444080 | Msa0505380 | 0.817891 | 2.606105e-52 | -8.615850e-47 |
| Msa0444080 | Msa0514610 | 0.817315 | 3.515557e-52 | -8.615850e-47 |
| Msa0444080 | Msa0527910 | 0.819197 | 1.317658e-52 | -8.615850e-47 |
| Msa0444080 | Msa0546570 | 0.813332 | 2.701136e-51 | -8.615850e-47 |
| Msa0444080 | Msa0550540 | 0.812454 | 4.205632e-51 | -8.615850e-47 |
| Msa0444080 | Msa0550570 | 0.810533 | 1.099215e-50 | -8.615850e-47 |
| Msa0444080 | Msa0586850 | 0.810574 | 1.077235e-50 | -8.615850e-47 |
| Msa0444080 | Msa0602370 | 0.814205 | 1.734123e-51 | -8.615850e-47 |
| Msa0444080 | Msa0603670 | 0.814994 | 1.160106e-51 | -8.615850e-47 |
| Msa0444080 | Msa0609000 | 0.800094 | 1.693694e-48 | -8.615850e-47 |
| Msa0444080 | Msa0619920 | 0.823582 | 1.281824e-53 | -8.615850e-47 |
| Msa0444080 | Msa0646130 | 0.807854 | 4.125198e-50 | -8.615850e-47 |
| Msa0444080 | Msa0659790 | 0.805813 | 1.113366e-49 | -8.615850e-47 |
| Msa0444080 | Msa0659990 | 0.802593 | 5.213100e-49 | -8.615850e-47 |
| Msa0444080 | Msa0706390 | 0.820882 | 5.423255e-53 | -8.615850e-47 |
| Msa0444080 | Msa0781270 | 0.824213 | 9.115548e-54 | -8.615850e-47 |
| Msa0444080 | Msa0795660 | 0.809709 | 1.654725e-50 | -8.615850e-47 |
| Msa0444080 | Msa0818770 | 0.831833 | 1.333951e-55 | -8.615850e-47 |
| Msa0444080 | Msa0827460 | 0.837310 | 5.604318e-57 | -8.615850e-47 |
| Msa0444080 | Msa0981430 | 0.813593 | 2.366353e-51 | -8.615850e-47 |
| Msa0444080 | Msa1070390 | 0.809070 | 2.269554e-50 | -8.615850e-47 |
| Msa0444080 | Msa1114040 | 0.826277 | 2.963187e-54 | -8.615850e-47 |
| Msa0444080 | Msa1158770 | 0.804352 | 2.251452e-49 | -8.615850e-47 |
| Msa0444080 | Msa1162830 | 0.818931 | 1.514657e-52 | -8.615850e-47 |
| Msa0444080 | Msa1163540 | 0.836302 | 1.013292e-56 | -8.615850e-47 |
| Msa0444080 | Msa1179980 | 0.803045 | 4.204228e-49 | -8.615850e-47 |
| Msa0444080 | Msa1223330 | 0.809654 | 1.700237e-50 | -8.615850e-47 |
| Msa0444080 | Msa1226610 | 0.840676 | 7.534016e-58 | -8.615850e-47 |
| Msa0444080 | Msa1270620 | 0.809334 | 1.992389e-50 | -8.615850e-47 |
| Msa0444080 | Msa1270690 | 0.802324 | 5.922789e-49 | -8.615850e-47 |
| Msa0444080 | Msa1317270 | 0.803103 | 4.089919e-49 | -8.615850e-47 |
| Msa0444080 | Msa1329450 | 0.806644 | 7.444026e-50 | -8.615850e-47 |
| Msa0444080 | Msa1355700 | 0.805966 | 1.034320e-49 | -8.615850e-47 |
| Msa0444080 | Msa1418920 | 0.807442 | 5.043806e-50 | -8.615850e-47 |
| Msa0444080 | Msa1462470 | 0.815459 | 9.146008e-52 | -8.615850e-47 |
| Msa0239490 | Msa0444080 | 0.806928 | 6.483018e-50 | -8.615850e-47 |
| Msa0244930 | Msa0444080 | 0.802188 | 6.315704e-49 | -8.615850e-47 |
| Msa0274100 | Msa0444080 | 0.809044 | 2.297994e-50 | -8.615850e-47 |
| Msa0335320 | Msa0444080 | -0.809368 | 1.959115e-50 | -8.615850e-47 |
| Msa0349700 | Msa0444080 | 0.825549 | 4.412222e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0444080 | MtrunA17_Chr3g0083541 | 96.750 | 400 | 10 | 1 | 1 | 397 | 1 | 400 | 0.0 | 793 |
| Msa0444080 | MtrunA17_Chr2g0292461 | 45.714 | 350 | 152 | 4 | 48 | 397 | 18 | 329 | 2.32e-107 | 319 |
| Msa0444080 | MtrunA17_Chr8g0352751 | 83.951 | 162 | 26 | 0 | 236 | 397 | 1 | 162 | 5.22e-95 | 281 |
| Msa0444080 | MtrunA17_Chr8g0352731 | 66.851 | 181 | 59 | 1 | 55 | 234 | 1 | 181 | 4.22e-82 | 249 |
| Msa0444080 | MtrunA17_Chr8g0380381 | 46.071 | 280 | 115 | 4 | 116 | 395 | 1 | 244 | 1.98e-78 | 242 |
| Msa0444080 | MtrunA17_Chr2g0280981 | 45.283 | 159 | 78 | 2 | 239 | 393 | 3 | 156 | 8.13e-38 | 134 |
| Msa0444080 | MtrunA17_Chr3g0111361 | 44.444 | 162 | 81 | 2 | 236 | 393 | 1 | 157 | 1.48e-37 | 133 |
| Msa0444080 | MtrunA17_Chr8g0393081 | 41.250 | 160 | 93 | 1 | 236 | 395 | 17 | 175 | 3.42e-37 | 133 |
| Msa0444080 | MtrunA17_Chr2g0290631 | 45.860 | 157 | 84 | 1 | 236 | 391 | 1 | 157 | 1.90e-34 | 125 |
| Msa0444080 | MtrunA17_Chr1g0160811 | 44.231 | 156 | 85 | 2 | 239 | 393 | 5 | 159 | 4.93e-34 | 124 |
| Msa0444080 | MtrunA17_Chr6g0478401 | 38.728 | 173 | 102 | 2 | 223 | 395 | 3 | 171 | 2.50e-31 | 117 |
| Msa0444080 | MtrunA17_Chr4g0043861 | 39.394 | 165 | 91 | 2 | 236 | 396 | 1 | 160 | 8.81e-31 | 115 |
| Msa0444080 | MtrunA17_Chr6g0481511 | 43.478 | 115 | 64 | 1 | 51 | 165 | 36 | 149 | 2.62e-24 | 100 |
| Msa0444080 | MtrunA17_Chr2g0318391 | 41.803 | 122 | 63 | 3 | 51 | 172 | 19 | 132 | 1.37e-23 | 102 |
| Msa0444080 | MtrunA17_Chr8g0360731 | 44.248 | 113 | 55 | 3 | 51 | 163 | 19 | 123 | 6.40e-23 | 100 |
| Msa0444080 | MtrunA17_Chr8g0385781 | 39.583 | 144 | 61 | 4 | 51 | 169 | 497 | 639 | 1.70e-20 | 94.0 |
| Msa0444080 | MtrunA17_Chr8g0380371 | 58.491 | 53 | 22 | 0 | 48 | 100 | 9 | 61 | 1.71e-19 | 82.0 |
| Msa0444080 | MtrunA17_Chr7g0221441 | 39.552 | 134 | 56 | 3 | 54 | 163 | 508 | 640 | 4.80e-19 | 89.4 |
| Msa0444080 | MtrunA17_Chr8g0366741 | 51.429 | 70 | 33 | 1 | 54 | 123 | 16 | 84 | 4.14e-18 | 85.5 |
| Msa0444080 | MtrunA17_Chr1g0182571 | 48.052 | 77 | 39 | 1 | 50 | 126 | 6 | 81 | 6.80e-18 | 85.1 |
| Msa0444080 | MtrunA17_Chr8g0366731 | 51.429 | 70 | 33 | 1 | 54 | 123 | 16 | 84 | 7.41e-18 | 84.7 |
| Msa0444080 | MtrunA17_Chr7g0262921 | 48.052 | 77 | 39 | 1 | 50 | 126 | 6 | 81 | 2.29e-17 | 83.6 |
| Msa0444080 | MtrunA17_Chr3g0131671 | 35.000 | 140 | 66 | 3 | 48 | 163 | 497 | 635 | 3.31e-17 | 84.0 |
| Msa0444080 | MtrunA17_Chr4g0037651 | 41.818 | 110 | 55 | 5 | 32 | 133 | 457 | 565 | 3.13e-15 | 77.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0444080 | AT3G07940.1 | 67.448 | 384 | 110 | 4 | 17 | 397 | 14 | 385 | 0.0 | 527 |
| Msa0444080 | AT4G05330.3 | 48.571 | 350 | 152 | 4 | 48 | 397 | 15 | 336 | 1.63e-117 | 345 |
| Msa0444080 | AT4G05330.1 | 48.571 | 350 | 152 | 4 | 48 | 397 | 15 | 336 | 1.63e-117 | 345 |
| Msa0444080 | AT4G21160.2 | 48.286 | 350 | 154 | 4 | 48 | 397 | 15 | 337 | 2.19e-117 | 345 |
| Msa0444080 | AT4G21160.3 | 48.286 | 350 | 154 | 4 | 48 | 397 | 15 | 337 | 2.19e-117 | 345 |
| Msa0444080 | AT4G21160.1 | 48.286 | 350 | 154 | 4 | 48 | 397 | 15 | 337 | 2.19e-117 | 345 |
| Msa0444080 | AT4G21160.4 | 48.286 | 350 | 154 | 4 | 48 | 397 | 15 | 337 | 2.19e-117 | 345 |
| Msa0444080 | AT3G07940.2 | 59.846 | 259 | 89 | 4 | 17 | 272 | 14 | 260 | 4.66e-106 | 314 |
| Msa0444080 | AT4G05330.2 | 48.607 | 323 | 138 | 4 | 75 | 397 | 7 | 301 | 1.34e-104 | 311 |
| Msa0444080 | AT1G70790.3 | 45.752 | 153 | 82 | 1 | 240 | 391 | 6 | 158 | 4.05e-37 | 133 |
| Msa0444080 | AT1G70790.2 | 45.752 | 153 | 82 | 1 | 240 | 391 | 6 | 158 | 4.05e-37 | 133 |
| Msa0444080 | AT1G70790.1 | 45.752 | 153 | 82 | 1 | 240 | 391 | 6 | 158 | 4.05e-37 | 133 |
| Msa0444080 | AT1G66360.1 | 42.593 | 162 | 92 | 1 | 236 | 396 | 1 | 162 | 1.15e-36 | 132 |
| Msa0444080 | AT1G70800.1 | 42.073 | 164 | 94 | 1 | 228 | 391 | 2 | 164 | 1.65e-36 | 131 |
| Msa0444080 | AT1G73580.1 | 42.500 | 160 | 91 | 1 | 236 | 395 | 4 | 162 | 2.57e-36 | 130 |
| Msa0444080 | AT1G70810.1 | 41.139 | 158 | 92 | 1 | 236 | 393 | 1 | 157 | 3.95e-34 | 125 |
| Msa0444080 | AT5G37740.1 | 41.875 | 160 | 91 | 1 | 236 | 393 | 1 | 160 | 1.30e-33 | 123 |
| Msa0444080 | AT2G01540.1 | 42.484 | 153 | 87 | 1 | 240 | 391 | 6 | 158 | 5.93e-33 | 122 |
| Msa0444080 | AT5G47710.1 | 40.881 | 159 | 93 | 1 | 236 | 393 | 1 | 159 | 4.86e-32 | 119 |
| Msa0444080 | AT5G47710.2 | 40.881 | 159 | 93 | 1 | 236 | 393 | 1 | 159 | 4.86e-32 | 119 |
| Msa0444080 | AT5G47710.3 | 40.881 | 159 | 93 | 1 | 236 | 393 | 1 | 159 | 4.86e-32 | 119 |
| Msa0444080 | AT5G47710.4 | 40.881 | 159 | 93 | 1 | 236 | 393 | 1 | 159 | 4.86e-32 | 119 |
| Msa0444080 | AT1G48590.4 | 39.024 | 164 | 91 | 2 | 236 | 395 | 6 | 164 | 6.79e-32 | 119 |
| Msa0444080 | AT1G48590.1 | 39.024 | 164 | 91 | 2 | 236 | 395 | 6 | 164 | 6.79e-32 | 119 |
| Msa0444080 | AT1G48590.2 | 37.097 | 186 | 96 | 3 | 226 | 395 | 15 | 195 | 1.20e-31 | 119 |
| Msa0444080 | AT1G23140.1 | 37.888 | 161 | 99 | 1 | 236 | 396 | 1 | 160 | 3.27e-31 | 117 |
| Msa0444080 | AT3G17980.1 | 36.585 | 164 | 95 | 2 | 236 | 395 | 13 | 171 | 6.55e-31 | 116 |
| Msa0444080 | AT5G37740.2 | 39.412 | 170 | 91 | 2 | 236 | 393 | 1 | 170 | 1.35e-30 | 115 |
| Msa0444080 | AT5G54310.1 | 38.235 | 170 | 89 | 3 | 51 | 212 | 19 | 180 | 9.40e-25 | 105 |
| Msa0444080 | AT3G17660.4 | 40.708 | 113 | 59 | 2 | 51 | 163 | 19 | 123 | 5.72e-24 | 98.2 |
| Msa0444080 | AT3G17660.1 | 40.708 | 113 | 59 | 2 | 51 | 163 | 19 | 123 | 1.12e-23 | 99.0 |
| Msa0444080 | AT3G17660.2 | 40.708 | 113 | 59 | 2 | 51 | 163 | 19 | 123 | 3.46e-23 | 97.8 |
| Msa0444080 | AT1G70790.4 | 43.697 | 119 | 66 | 1 | 274 | 391 | 3 | 121 | 2.56e-22 | 92.8 |
| Msa0444080 | AT5G13300.1 | 46.789 | 109 | 52 | 3 | 29 | 135 | 485 | 589 | 1.61e-19 | 91.3 |
| Msa0444080 | AT5G61980.1 | 40.146 | 137 | 57 | 3 | 51 | 163 | 501 | 636 | 9.07e-19 | 89.0 |
| Msa0444080 | AT2G35210.2 | 50.725 | 69 | 33 | 1 | 54 | 122 | 16 | 83 | 1.31e-17 | 84.0 |
| Msa0444080 | AT3G17660.3 | 37.931 | 116 | 48 | 4 | 51 | 163 | 19 | 113 | 1.81e-17 | 81.3 |
| Msa0444080 | AT2G35210.1 | 50.725 | 69 | 33 | 1 | 54 | 122 | 16 | 83 | 2.33e-17 | 83.6 |
| Msa0444080 | AT1G48590.3 | 29.570 | 186 | 78 | 4 | 226 | 395 | 15 | 163 | 2.75e-17 | 79.3 |
| Msa0444080 | AT5G46750.1 | 50.725 | 69 | 33 | 1 | 54 | 122 | 16 | 83 | 4.16e-17 | 82.8 |
| Msa0444080 | AT2G37550.2 | 46.753 | 77 | 40 | 1 | 50 | 126 | 6 | 81 | 8.95e-17 | 82.0 |
| Msa0444080 | AT2G37550.1 | 46.753 | 77 | 40 | 1 | 50 | 126 | 6 | 81 | 8.95e-17 | 82.0 |
| Msa0444080 | AT1G10870.1 | 40.000 | 130 | 57 | 5 | 59 | 169 | 478 | 605 | 9.20e-17 | 82.8 |
| Msa0444080 | AT4G17890.2 | 49.275 | 69 | 34 | 1 | 54 | 122 | 19 | 86 | 1.83e-16 | 80.9 |
| Msa0444080 | AT3G53710.1 | 46.154 | 78 | 41 | 1 | 50 | 127 | 6 | 82 | 2.43e-16 | 80.9 |
| Msa0444080 | AT3G53710.3 | 46.154 | 78 | 41 | 1 | 50 | 127 | 6 | 82 | 2.43e-16 | 80.9 |
| Msa0444080 | AT3G53710.2 | 46.154 | 78 | 41 | 1 | 50 | 127 | 6 | 82 | 2.43e-16 | 80.9 |
| Msa0444080 | AT4G17890.1 | 49.275 | 69 | 34 | 1 | 54 | 122 | 19 | 86 | 2.58e-16 | 80.5 |
| Msa0444080 | AT1G10870.2 | 38.519 | 135 | 57 | 5 | 59 | 169 | 478 | 610 | 3.90e-16 | 80.9 |
| Msa0444080 | AT1G60860.2 | 54.688 | 64 | 27 | 1 | 59 | 120 | 367 | 430 | 6.28e-15 | 77.0 |
| Msa0444080 | AT1G60860.3 | 54.688 | 64 | 27 | 1 | 59 | 120 | 307 | 370 | 7.11e-15 | 76.6 |
| Msa0444080 | AT1G60860.1 | 54.688 | 64 | 27 | 1 | 59 | 120 | 478 | 541 | 7.42e-15 | 77.0 |
| Msa0444080 | AT1G03370.1 | 37.778 | 90 | 55 | 1 | 243 | 331 | 3 | 92 | 1.10e-11 | 67.4 |
| Msa0444080 | AT1G03370.2 | 37.778 | 90 | 55 | 1 | 243 | 331 | 3 | 92 | 1.81e-11 | 66.6 |
Find 85 sgRNAs with CRISPR-Local
Find 314 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTGAATACTTACACCCATTT+TGG | 0.186231 | 3_3:-16848030 | None:intergenic |
| ATTAAGGTTAATGTAGTTAA+AGG | 0.211722 | 3_3:+16850143 | Msa0444080:CDS |
| TATTTCCTCCACTTGAAATT+AGG | 0.226494 | 3_3:-16845604 | None:intergenic |
| TTTGTCAGAAATATATTCTT+TGG | 0.235295 | 3_3:+16845408 | Msa0444080:five_prime_UTR |
| ATAGTGACATTCCTTGATTT+TGG | 0.250360 | 3_3:+16845870 | Msa0444080:five_prime_UTR |
| GTTTCAAATATTTGAGGATA+TGG | 0.252120 | 3_3:+16845892 | Msa0444080:exon |
| TGAATTTGTTGGATTGATTA+AGG | 0.287189 | 3_3:+16850127 | Msa0444080:CDS |
| AGTCAATGCAGCTTGGAAAA+TGG | 0.292719 | 3_3:+16850767 | Msa0444080:CDS |
| TCTTGCGTGGGATGGTATAA+AGG | 0.303502 | 3_3:-16849316 | None:intergenic |
| GTGGATCATCAGAGCCAAAA+TGG | 0.335283 | 3_3:+16848016 | Msa0444080:CDS |
| AGAACAATTTAAATCCTGTT+TGG | 0.340329 | 3_3:+16850341 | Msa0444080:CDS |
| TCAATGGAAGAATTCGGTTT+TGG | 0.341563 | 3_3:-16849100 | None:intergenic |
| ACGAACGTACCTTAGATATA+TGG | 0.348879 | 3_3:-16848863 | None:intergenic |
| GCAGGTATGGTTGAATTTGT+TGG | 0.378256 | 3_3:+16850116 | Msa0444080:CDS |
| CCTTATGTCATCCTTTCTCT+TGG | 0.379448 | 3_3:+16850203 | Msa0444080:CDS |
| AACATCAGGTCTTCAAGTCT+TGG | 0.381673 | 3_3:+16848792 | Msa0444080:intron |
| GTCAATGCAGCTTGGAAAAT+GGG | 0.386273 | 3_3:+16850768 | Msa0444080:CDS |
| ATGAGAGAGATAGGAGTAAA+GGG | 0.387504 | 3_3:+16850937 | Msa0444080:three_prime_UTR |
| CCTAGGAGTCCATATATCTA+AGG | 0.390014 | 3_3:+16848854 | Msa0444080:CDS |
| ACTCAATAGATGAGAGAGAT+AGG | 0.395457 | 3_3:+16850928 | Msa0444080:exon |
| TTAAGAGGAGGGATGTTCTC+AGG | 0.396970 | 3_3:-16850388 | None:intergenic |
| AGAGAGCGATGGATGTTATC+TGG | 0.401047 | 3_3:+16847792 | Msa0444080:CDS |
| TCTCTCATCTATTGAGTAAG+AGG | 0.407997 | 3_3:-16850922 | None:intergenic |
| GGCTATCATTTCGAAACAGC+TGG | 0.413504 | 3_3:+16849430 | Msa0444080:CDS |
| TCTCAGGGATTGACAGCATT+AGG | 0.419633 | 3_3:-16850372 | None:intergenic |
| GATGAGAGAGATAGGAGTAA+AGG | 0.422637 | 3_3:+16850936 | Msa0444080:exon |
| CGCTCCTCAATGGAAGAATT+CGG | 0.431409 | 3_3:-16849106 | None:intergenic |
| ATTAGGCTTTCATTCCAAAC+AGG | 0.437169 | 3_3:-16850355 | None:intergenic |
| AAACAACTAGAAATCGTATT+GGG | 0.442080 | 3_3:+16849409 | Msa0444080:CDS |
| AGTCGATTCATTGGTCAACT+TGG | 0.444047 | 3_3:+16849018 | Msa0444080:CDS |
| CAAACAACTAGAAATCGTAT+TGG | 0.459695 | 3_3:+16849408 | Msa0444080:CDS |
| TTTATTTGCATCAAGTGCTC+TGG | 0.459972 | 3_3:+16848819 | Msa0444080:CDS |
| GGAATAATATCTCTTGAAGA+AGG | 0.465885 | 3_3:+16850823 | Msa0444080:CDS |
| TTTACTGTTATAGGCAGGTA+TGG | 0.466561 | 3_3:+16850103 | Msa0444080:intron |
| GACAATCTGATGCGTCAAGC+AGG | 0.474603 | 3_3:+16847973 | Msa0444080:CDS |
| AAAATCAGAGCGCTCCTCAA+TGG | 0.477617 | 3_3:-16849116 | None:intergenic |
| AAGGTTGAAACTTATCAATA+AGG | 0.480735 | 3_3:-16851130 | None:intergenic |
| AGACGAACAAGTCGATTCAT+TGG | 0.483436 | 3_3:+16849009 | Msa0444080:CDS |
| GTTTGAGGAACTGCTCTGAC+TGG | 0.484449 | 3_3:-16849349 | None:intergenic |
| TGAAGAAGGGAAAGTGAGAC+AGG | 0.489048 | 3_3:+16850837 | Msa0444080:CDS |
| TCTGAAATCAATGGTATGAC+AGG | 0.489321 | 3_3:+16845935 | Msa0444080:CDS |
| TTGTGGAGGATTGTAGTTTG+AGG | 0.495974 | 3_3:-16849364 | None:intergenic |
| CTTGCGTGGGATGGTATAAA+GGG | 0.496671 | 3_3:-16849315 | None:intergenic |
| TGTCACTGAATCTAGATGAA+TGG | 0.499000 | 3_3:+16848984 | Msa0444080:CDS |
| CCAAGAGAAAGGATGACATA+AGG | 0.500819 | 3_3:-16850203 | None:intergenic |
| TGACTTTGAGAATTTAAACT+TGG | 0.501348 | 3_3:-16847768 | None:intergenic |
| AATATTTGAAACCAAAATCA+AGG | 0.504727 | 3_3:-16845881 | None:intergenic |
| TTTATCTTCATGCAGAGAAA+GGG | 0.506547 | 3_3:+16845819 | Msa0444080:intron |
| GATTCATTGGTCAACTTGGG+TGG | 0.513627 | 3_3:+16849022 | Msa0444080:CDS |
| TCACTATATCTCTGATAGCT+AGG | 0.520516 | 3_3:-16850172 | None:intergenic |
| CAAGAGAAAGGATGACATAA+GGG | 0.522273 | 3_3:-16850202 | None:intergenic |
| CCTTAGATATATGGACTCCT+AGG | 0.529324 | 3_3:-16848854 | None:intergenic |
| GTCGATTCATTGGTCAACTT+GGG | 0.529688 | 3_3:+16849019 | Msa0444080:CDS |
| TGAAATTAGGCATGAGCCAA+TGG | 0.532679 | 3_3:-16845591 | None:intergenic |
| GACAATACACTTGTGAAAGA+TGG | 0.535420 | 3_3:+16850802 | Msa0444080:CDS |
| TGGATCATCAGAGCCAAAAT+GGG | 0.539189 | 3_3:+16848017 | Msa0444080:CDS |
| ATCATGGAGTCAATGCAGCT+TGG | 0.540788 | 3_3:+16850760 | Msa0444080:CDS |
| TAAGAGGAGGGATGTTCTCA+GGG | 0.542262 | 3_3:-16850387 | None:intergenic |
| TCACTTGGTGACCAAGAGAA+AGG | 0.546656 | 3_3:-16850214 | None:intergenic |
| GCTATCATTTCGAAACAGCT+GGG | 0.550078 | 3_3:+16849431 | Msa0444080:CDS |
| ATATGAGAAATCATCAATCA+TGG | 0.553492 | 3_3:+16850744 | Msa0444080:CDS |
| TGGATGAAGTTGTTCTTGCG+TGG | 0.558865 | 3_3:-16849329 | None:intergenic |
| CAGTGCAAAAGAGATCATAA+AGG | 0.562906 | 3_3:-16847740 | None:intergenic |
| TGTAGAGAATAAGCTGCCAT+TGG | 0.563081 | 3_3:+16845575 | Msa0444080:intron |
| GGATGAAGTTGTTCTTGCGT+GGG | 0.571202 | 3_3:-16849328 | None:intergenic |
| GATCACTAGGTCCACAGGAA+AGG | 0.571277 | 3_3:+16847947 | Msa0444080:intron |
| AACAAGTTCTGTGCTGATTG+TGG | 0.576035 | 3_3:+16847997 | Msa0444080:CDS |
| CTTCCGATCACTAGGTCCAC+AGG | 0.578366 | 3_3:+16847942 | Msa0444080:intron |
| AAAACCGAATTCTTCCATTG+AGG | 0.580396 | 3_3:+16849102 | Msa0444080:CDS |
| GGCTCATGCCTAATTTCAAG+TGG | 0.582598 | 3_3:+16845596 | Msa0444080:five_prime_UTR |
| GAATAATATCTCTTGAAGAA+GGG | 0.592669 | 3_3:+16850824 | Msa0444080:CDS |
| TACAAAGAAGAGTAACTCGT+TGG | 0.593650 | 3_3:+16849479 | Msa0444080:CDS |
| GAAGTTGTTCTTGCGTGGGA+TGG | 0.594112 | 3_3:-16849324 | None:intergenic |
| TCTGGTATACATAGAAGCCT+AGG | 0.599149 | 3_3:+16848837 | Msa0444080:CDS |
| AGATTGTCTAACCTTTCCTG+TGG | 0.600164 | 3_3:-16847958 | None:intergenic |
| CTCAAAGTCAAAGAGAGCGA+TGG | 0.600889 | 3_3:+16847781 | Msa0444080:CDS |
| GGGACAAATCAAATTCTCCT+CGG | 0.602338 | 3_3:-16849295 | None:intergenic |
| ACAATCTGATGCGTCAAGCA+GGG | 0.621759 | 3_3:+16847974 | Msa0444080:CDS |
| AGAAAGGGATGATAAATACA+TGG | 0.628093 | 3_3:+16845834 | Msa0444080:five_prime_UTR |
| AGGAATGTCACTATAATCTG+AGG | 0.645784 | 3_3:-16845861 | None:intergenic |
| TCATGCCTAATTTCAAGTGG+AGG | 0.646065 | 3_3:+16845599 | Msa0444080:five_prime_UTR |
| CTTGGAAAATGGGTAGCAAG+TGG | 0.649585 | 3_3:+16850778 | Msa0444080:CDS |
| AGGCTACAAAATGTTGAGAG+AGG | 0.650552 | 3_3:+16850871 | Msa0444080:CDS |
| CTATCATTTCGAAACAGCTG+GGG | 0.665639 | 3_3:+16849432 | Msa0444080:CDS |
| TGAGACAGGAAATCTCATTG+AGG | 0.699747 | 3_3:+16850851 | Msa0444080:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTGAATTTTAAGTTAATT+AGG | + | chr3_3:16846792-16846811 | Msa0444080:intron | 10.0% |
| !!! | TTTGAATTTTAAGTTAATTA+GGG | + | chr3_3:16846793-16846812 | Msa0444080:intron | 10.0% |
| !! | AAAATTTATCAAAACTAAAT+TGG | - | chr3_3:16848310-16848329 | None:intergenic | 10.0% |
| !! | GAGAAAAAAAAAAAAAAAAT+AGG | + | chr3_3:16849946-16849965 | Msa0444080:intron | 10.0% |
| !!! | TATTTTTTTTAATCTACATA+AGG | - | chr3_3:16851078-16851097 | None:intergenic | 10.0% |
| !!! | ATTAATAGGATAGTTTTTTT+TGG | + | chr3_3:16846851-16846870 | Msa0444080:intron | 15.0% |
| !! | ATAATAAATTATCTGTTATC+AGG | + | chr3_3:16847084-16847103 | Msa0444080:intron | 15.0% |
| !! | GATAAATGTAACAATTAAAA+GGG | - | chr3_3:16847825-16847844 | None:intergenic | 15.0% |
| !! | TGATAAATGTAACAATTAAA+AGG | - | chr3_3:16847826-16847845 | None:intergenic | 15.0% |
| !!! | TCTTTTTAATTTTATTATCC+AGG | + | chr3_3:16849241-16849260 | Msa0444080:intron | 15.0% |
| !! | TAATAGAACAAAAAAATTAC+AGG | - | chr3_3:16849640-16849659 | None:intergenic | 15.0% |
| !! | AAAAAAAAAAATAGGGATAA+AGG | + | chr3_3:16849954-16849973 | Msa0444080:intron | 15.0% |
| !!! | TTGAAATATTACATTTTTCT+TGG | + | chr3_3:16850050-16850069 | Msa0444080:intron | 15.0% |
| !!! | AATTTGCAAAAATTACATTT+TGG | + | chr3_3:16850970-16850989 | Msa0444080:three_prime_UTR | 15.0% |
| !! | TTTGTCAGAAATATATTCTT+TGG | + | chr3_3:16845408-16845427 | Msa0444080:five_prime_UTR | 20.0% |
| !! | GAAATATCAAAATCAAAACA+TGG | - | chr3_3:16845521-16845540 | None:intergenic | 20.0% |
| !!! | TGATTTTGATATTTCTCTTT+TGG | + | chr3_3:16845526-16845545 | Msa0444080:intron | 20.0% |
| !! | AAAATGTCATAATACAAGAT+TGG | - | chr3_3:16845713-16845732 | None:intergenic | 20.0% |
| !!! | AATATTTGAAACCAAAATCA+AGG | - | chr3_3:16845884-16845903 | None:intergenic | 20.0% |
| !!! | ATTTTGGTTTCAAATATTTG+AGG | + | chr3_3:16845886-16845905 | Msa0444080:five_prime_UTR | 20.0% |
| !!! | TTTTAAATTATTATCCGTGT+CGG | - | chr3_3:16846181-16846200 | None:intergenic | 20.0% |
| !! | TTCAGTGTAATTATATTTGT+CGG | - | chr3_3:16846673-16846692 | None:intergenic | 20.0% |
| !! | AACTATCCTATTAATCTATA+AGG | - | chr3_3:16846846-16846865 | None:intergenic | 20.0% |
| !!! | AATTTTTGTTCTGAATTTTG+AGG | + | chr3_3:16846884-16846903 | Msa0444080:intron | 20.0% |
| !!! | ATTTTTGTTCTGAATTTTGA+GGG | + | chr3_3:16846885-16846904 | Msa0444080:intron | 20.0% |
| !! | AAATTAAACATGATCTATGA+GGG | + | chr3_3:16847049-16847068 | Msa0444080:intron | 20.0% |
| !! | ACAGATAATTTATTATAGAC+AGG | - | chr3_3:16847080-16847099 | None:intergenic | 20.0% |
| !!! | TCCATTTTCTTAAATATTAC+TGG | - | chr3_3:16847288-16847307 | None:intergenic | 20.0% |
| !! | TACAAATGCTTAAAAACAAA+CGG | - | chr3_3:16847491-16847510 | None:intergenic | 20.0% |
| !! | AAATTAAATGTCTCAATTGT+AGG | + | chr3_3:16847702-16847721 | Msa0444080:intron | 20.0% |
| !! | AATTAAATGTCTCAATTGTA+GGG | + | chr3_3:16847703-16847722 | Msa0444080:intron | 20.0% |
| !!! | TAATTTGTTTATCCAAACAT+GGG | - | chr3_3:16848352-16848371 | None:intergenic | 20.0% |
| !!! | TTAATTTGTTTATCCAAACA+TGG | - | chr3_3:16848353-16848372 | None:intergenic | 20.0% |
| !! | AAAATAAAAAAATTTGTCCG+AGG | - | chr3_3:16848628-16848647 | None:intergenic | 20.0% |
| !! | ATTCATATTTATCTTGAGAT+AGG | + | chr3_3:16849198-16849217 | Msa0444080:intron | 20.0% |
| !! | AAAAGAAAAGTGAAAAACAA+TGG | - | chr3_3:16849227-16849246 | None:intergenic | 20.0% |
| !! | TAGACTAAAATGGAAAAATA+GGG | - | chr3_3:16849667-16849686 | None:intergenic | 20.0% |
| !! | ATAGACTAAAATGGAAAAAT+AGG | - | chr3_3:16849668-16849687 | None:intergenic | 20.0% |
| !! | AAATGTTACATAGACTAAAA+TGG | - | chr3_3:16849677-16849696 | None:intergenic | 20.0% |
| !! | AAGCAAAAAATATATACTAC+AGG | + | chr3_3:16849839-16849858 | Msa0444080:intron | 20.0% |
| !! | AGCAAAAAATATATACTACA+GGG | + | chr3_3:16849840-16849859 | Msa0444080:intron | 20.0% |
| !! | ATTAAGGTTAATGTAGTTAA+AGG | + | chr3_3:16850143-16850162 | Msa0444080:CDS | 20.0% |
| !!! | ATTCAACTTACTATTTTAAG+AGG | - | chr3_3:16850406-16850425 | None:intergenic | 20.0% |
| !!! | ATTCAAAAATGACGATTTTA+TGG | + | chr3_3:16850675-16850694 | Msa0444080:CDS | 20.0% |
| !!! | TTCAAAAATGACGATTTTAT+GGG | + | chr3_3:16850676-16850695 | Msa0444080:CDS | 20.0% |
| !!! | TTTTTTAATCTACATAAGGA+TGG | - | chr3_3:16851074-16851093 | None:intergenic | 20.0% |
| !!! | ATTATCTCTAAGTGTTTTTT+TGG | + | chr3_3:16851101-16851120 | Msa0444080:three_prime_UTR | 20.0% |
| !!! | TTTTTCAAATCAATCTCTGA+GGG | - | chr3_3:16845445-16845464 | None:intergenic | 25.0% |
| !!! | TTTTTTCAAATCAATCTCTG+AGG | - | chr3_3:16845446-16845465 | None:intergenic | 25.0% |
| ! | GATTGGAAAAACATGAAAAA+TGG | - | chr3_3:16845696-16845715 | None:intergenic | 25.0% |
| ! | GTTTCAAATATTTGAGGATA+TGG | + | chr3_3:16845892-16845911 | Msa0444080:exon | 25.0% |
| !! | CAAGAAAAATCTGAAATCAA+TGG | + | chr3_3:16845926-16845945 | Msa0444080:CDS | 25.0% |
| ! | ATTCATTATATCACTTCGAT+GGG | - | chr3_3:16846001-16846020 | None:intergenic | 25.0% |
| ! | AGATAATTCAGTGTAATCAT+AGG | + | chr3_3:16846206-16846225 | Msa0444080:intron | 25.0% |
| ! | TGAGTTCCTTATAGATTAAT+AGG | + | chr3_3:16846837-16846856 | Msa0444080:intron | 25.0% |
| !! | TTTAATTTCTTTCCTTGAGA+AGG | - | chr3_3:16847037-16847056 | None:intergenic | 25.0% |
| ! | GAAATTAAACATGATCTATG+AGG | + | chr3_3:16847048-16847067 | Msa0444080:intron | 25.0% |
| ! | GCCAGTAATATTTAAGAAAA+TGG | + | chr3_3:16847284-16847303 | Msa0444080:intron | 25.0% |
| ! | TAGTAAAGCAGAAACAATAA+AGG | - | chr3_3:16847408-16847427 | None:intergenic | 25.0% |
| !!! | ATTTGTAAGTTGAGTTTTGA+AGG | + | chr3_3:16847504-16847523 | Msa0444080:intron | 25.0% |
| !!! | TTTGTAAGTTGAGTTTTGAA+GGG | + | chr3_3:16847505-16847524 | Msa0444080:intron | 25.0% |
| !! | TGACTTTGAGAATTTAAACT+TGG | - | chr3_3:16847437-16847456 | None:intergenic | 25.0% |
| ! | ATCAAATAACCAACATTATC+CGG | + | chr3_3:16847842-16847861 | Msa0444080:intron | 25.0% |
| !!! | TTGTTTGAAAAGCATTATCT+TGG | + | chr3_3:16848099-16848118 | Msa0444080:intron | 25.0% |
| !!! | TTTTTTCAGATAAGTGCTTA+TGG | + | chr3_3:16848447-16848466 | Msa0444080:intron | 25.0% |
| ! | ACATGATTTGACATGATTAT+AGG | + | chr3_3:16848958-16848977 | Msa0444080:intron | 25.0% |
| !!! | TTTGGTTTTTTTATGTAGCT+TGG | - | chr3_3:16849085-16849104 | None:intergenic | 25.0% |
| !! | GATTTTATTAGGTAACTAAC+TGG | + | chr3_3:16849133-16849152 | Msa0444080:intron | 25.0% |
| !!! | TCATAACGTTTTTTTTCTTG+TGG | - | chr3_3:16849384-16849403 | None:intergenic | 25.0% |
| ! | AAACAACTAGAAATCGTATT+GGG | + | chr3_3:16849409-16849428 | Msa0444080:CDS | 25.0% |
| ! | CTAAAGATGGATATATTACA+GGG | - | chr3_3:16849600-16849619 | None:intergenic | 25.0% |
| ! | TGCTAAAACAAAATGTTACA+AGG | + | chr3_3:16849916-16849935 | Msa0444080:intron | 25.0% |
| !!! | TGAATTTGTTGGATTGATTA+AGG | + | chr3_3:16850127-16850146 | Msa0444080:CDS | 25.0% |
| ! | ACTTATCATAATGTTTGCAA+AGG | + | chr3_3:16850263-16850282 | Msa0444080:intron | 25.0% |
| ! | AGAACAATTTAAATCCTGTT+TGG | + | chr3_3:16850341-16850360 | Msa0444080:CDS | 25.0% |
| !!! | AACTTACTATTTTAAGAGGA+GGG | - | chr3_3:16850402-16850421 | None:intergenic | 25.0% |
| ! | CATCATTTGAAAAATAAGCA+TGG | + | chr3_3:16850447-16850466 | Msa0444080:intron | 25.0% |
| ! | TTGAAAAATAAGCATGGAAT+TGG | + | chr3_3:16850453-16850472 | Msa0444080:intron | 25.0% |
| ! | ATATGAGAAATCATCAATCA+TGG | + | chr3_3:16850744-16850763 | Msa0444080:CDS | 25.0% |
| ! | GAATAATATCTCTTGAAGAA+GGG | + | chr3_3:16850824-16850843 | Msa0444080:CDS | 25.0% |
| ! | AAGGTTGAAACTTATCAATA+AGG | - | chr3_3:16851133-16851152 | None:intergenic | 25.0% |
| TATTTCCTCCACTTGAAATT+AGG | - | chr3_3:16845607-16845626 | None:intergenic | 30.0% | |
| ! | GATCTGTAAGATTTTTCTGT+TGG | + | chr3_3:16845635-16845654 | Msa0444080:intron | 30.0% |
| TCTCTGCATGAAGATAAAAA+GGG | - | chr3_3:16845817-16845836 | None:intergenic | 30.0% | |
| TTCTCTGCATGAAGATAAAA+AGG | - | chr3_3:16845818-16845837 | None:intergenic | 30.0% | |
| ! | TTTTATCTTCATGCAGAGAA+AGG | + | chr3_3:16845818-16845837 | Msa0444080:intron | 30.0% |
| TTTATCTTCATGCAGAGAAA+GGG | + | chr3_3:16845819-16845838 | Msa0444080:intron | 30.0% | |
| AGAAAGGGATGATAAATACA+TGG | + | chr3_3:16845834-16845853 | Msa0444080:five_prime_UTR | 30.0% | |
| ! | ATAGTGACATTCCTTGATTT+TGG | + | chr3_3:16845870-16845889 | Msa0444080:five_prime_UTR | 30.0% |
| ! | GAAGAAAGAATGATGGAAAA+GGG | - | chr3_3:16845975-16845994 | None:intergenic | 30.0% |
| TTCATTATATCACTTCGATG+GGG | - | chr3_3:16846000-16846019 | None:intergenic | 30.0% | |
| CATTCATTATATCACTTCGA+TGG | - | chr3_3:16846002-16846021 | None:intergenic | 30.0% | |
| CATCGAAGTGATATAATGAA+TGG | + | chr3_3:16846000-16846019 | Msa0444080:intron | 30.0% | |
| GAACAACAAGAATAAGTCAT+TGG | + | chr3_3:16846033-16846052 | Msa0444080:intron | 30.0% | |
| CATGTTTAACCAAAACAAAG+AGG | - | chr3_3:16846484-16846503 | None:intergenic | 30.0% | |
| GTTTATGATAAACCAATCCA+TGG | + | chr3_3:16846503-16846522 | Msa0444080:intron | 30.0% | |
| GTCAGTGTAATTATATGAGT+CGG | - | chr3_3:16846644-16846663 | None:intergenic | 30.0% | |
| AATTAGGGATGTTACTACAA+TGG | + | chr3_3:16846808-16846827 | Msa0444080:intron | 30.0% | |
| TTTCTCAAGACATCTTGTAT+TGG | + | chr3_3:16847113-16847132 | Msa0444080:intron | 30.0% | |
| CTTCAAATTAAAGGTTTGTC+AGG | - | chr3_3:16847348-16847367 | None:intergenic | 30.0% | |
| CTTTCTCTTATGTAGAAATG+GGG | - | chr3_3:16847565-16847584 | None:intergenic | 30.0% | |
| CCTTTCTCTTATGTAGAAAT+GGG | - | chr3_3:16847566-16847585 | None:intergenic | 30.0% | |
| TCCTTTCTCTTATGTAGAAA+TGG | - | chr3_3:16847567-16847586 | None:intergenic | 30.0% | |
| AGTGTAAGCTCAAAGATTAA+GGG | - | chr3_3:16847911-16847930 | None:intergenic | 30.0% | |
| TAGTGTAAGCTCAAAGATTA+AGG | - | chr3_3:16847912-16847931 | None:intergenic | 30.0% | |
| AAGGAACAATAAGATTTGTG+TGG | - | chr3_3:16848156-16848175 | None:intergenic | 30.0% | |
| TCTCAGTTATAACTTAGACA+AGG | - | chr3_3:16848175-16848194 | None:intergenic | 30.0% | |
| ! | AGTTGAAATTGATAGTCCTA+AGG | - | chr3_3:16848209-16848228 | None:intergenic | 30.0% |
| AAACTATACAAATCATGCTG+CGG | - | chr3_3:16848266-16848285 | None:intergenic | 30.0% | |
| ACTTATTTAAGCTGATCTAC+TGG | - | chr3_3:16848540-16848559 | None:intergenic | 30.0% | |
| ! | ATCACAAGAAGTTTAGAATG+AGG | + | chr3_3:16848658-16848677 | Msa0444080:intron | 30.0% |
| ATAGAAAGTTTCATGTCTCA+AGG | - | chr3_3:16848689-16848708 | None:intergenic | 30.0% | |
| ! | ATATGAGCTGCAACAATTTT+TGG | + | chr3_3:16849269-16849288 | Msa0444080:CDS | 30.0% |
| !!! | TAACGTTTTTTTTCTTGTGG+AGG | - | chr3_3:16849381-16849400 | None:intergenic | 30.0% |
| CAAACAACTAGAAATCGTAT+TGG | + | chr3_3:16849408-16849427 | Msa0444080:CDS | 30.0% | |
| CCTAAAGATGGATATATTAC+AGG | - | chr3_3:16849601-16849620 | None:intergenic | 30.0% | |
| CCTGTAATATATCCATCTTT+AGG | + | chr3_3:16849598-16849617 | Msa0444080:intron | 30.0% | |
| GTTTCAACAAAACCTAAAGA+TGG | - | chr3_3:16849613-16849632 | None:intergenic | 30.0% | |
| TCCCTATATGTTTGAAAACT+CGG | + | chr3_3:16849714-16849733 | Msa0444080:intron | 30.0% | |
| ! | ACCGAGTTTTCAAACATATA+GGG | - | chr3_3:16849718-16849737 | None:intergenic | 30.0% |
| ! | TACCGAGTTTTCAAACATAT+AGG | - | chr3_3:16849719-16849738 | None:intergenic | 30.0% |
| CTTTGAGTCTCTAACATATA+GGG | - | chr3_3:16849822-16849841 | None:intergenic | 30.0% | |
| ! | TAGGGATAAAGGTATATTAC+AGG | + | chr3_3:16849965-16849984 | Msa0444080:intron | 30.0% |
| ! | AGGGATAAAGGTATATTACA+GGG | + | chr3_3:16849966-16849985 | Msa0444080:intron | 30.0% |
| TTCTCCCTATTTACTGTTAT+AGG | + | chr3_3:16850094-16850113 | Msa0444080:intron | 30.0% | |
| TTAATATCTGATCTTGCAGT+CGG | + | chr3_3:16850300-16850319 | Msa0444080:intron | 30.0% | |
| !! | CAACTTACTATTTTAAGAGG+AGG | - | chr3_3:16850403-16850422 | None:intergenic | 30.0% |
| AAATGATGTCTCACAGAAAA+TGG | - | chr3_3:16850435-16850454 | None:intergenic | 30.0% | |
| ! | TTACTTCTTAAGCGATGTTT+TGG | + | chr3_3:16850511-16850530 | Msa0444080:intron | 30.0% |
| !!! | AATTTTGGCTCATTCAAAAG+TGG | - | chr3_3:16850539-16850558 | None:intergenic | 30.0% |
| GGAATAATATCTCTTGAAGA+AGG | + | chr3_3:16850823-16850842 | Msa0444080:CDS | 30.0% | |
| AGGAATGTCACTATAATCTG+AGG | - | chr3_3:16845864-16845883 | None:intergenic | 35.0% | |
| ! | TCTGAAATCAATGGTATGAC+AGG | + | chr3_3:16845935-16845954 | Msa0444080:CDS | 35.0% |
| ! | GGAAGAAAGAATGATGGAAA+AGG | - | chr3_3:16845976-16845995 | None:intergenic | 35.0% |
| ! | ACGTCTTCAATTTGAAGTGT+CGG | - | chr3_3:16846083-16846102 | None:intergenic | 35.0% |
| AATTGAAGACGTGTATGTGT+TGG | + | chr3_3:16846091-16846110 | Msa0444080:intron | 35.0% | |
| TGTGTAGTACCTATGAAGTA+GGG | + | chr3_3:16846114-16846133 | Msa0444080:intron | 35.0% | |
| TATGAAGCACAAACACTCTT+CGG | - | chr3_3:16846291-16846310 | None:intergenic | 35.0% | |
| GTTTAACCAAAACAAAGAGG+AGG | - | chr3_3:16846481-16846500 | None:intergenic | 35.0% | |
| TCATGACAAGCTATGAAACA+CGG | + | chr3_3:16846572-16846591 | Msa0444080:intron | 35.0% | |
| TTGCATTAGTCACTACCATA+TGG | - | chr3_3:16846932-16846951 | None:intergenic | 35.0% | |
| TTTCTTTCCTTGAGAAGGTT+GGG | - | chr3_3:16847032-16847051 | None:intergenic | 35.0% | |
| ATTTCTTTCCTTGAGAAGGT+TGG | - | chr3_3:16847033-16847052 | None:intergenic | 35.0% | |
| ! | CAAGAAACATCAGAAGCTTT+TGG | - | chr3_3:16847195-16847214 | None:intergenic | 35.0% |
| AGCTTCTGATGTTTCTTGTA+TGG | + | chr3_3:16847197-16847216 | Msa0444080:intron | 35.0% | |
| ! | GCACTGTCACTTCAAATTAA+AGG | - | chr3_3:16847357-16847376 | None:intergenic | 35.0% |
| CCCATTTCTACATAAGAGAA+AGG | + | chr3_3:16847563-16847582 | Msa0444080:intron | 35.0% | |
| TCACAAGTCAGAGTGTATAA+TGG | + | chr3_3:16847658-16847677 | Msa0444080:intron | 35.0% | |
| GTGTATAATGGTATTTCGAC+AGG | + | chr3_3:16847670-16847689 | Msa0444080:intron | 35.0% | |
| CAGTGCAAAAGAGATCATAA+AGG | - | chr3_3:16847743-16847762 | None:intergenic | 35.0% | |
| AACATAAACACTTGTGAGAC+CGG | - | chr3_3:16847864-16847883 | None:intergenic | 35.0% | |
| TCAAAGATTAAGGGTCTGTT+TGG | - | chr3_3:16847902-16847921 | None:intergenic | 35.0% | |
| ! | GTGAATACTTACACCCATTT+TGG | - | chr3_3:16848033-16848052 | None:intergenic | 35.0% |
| ACGTTTAATTAGCCCATGTT+TGG | + | chr3_3:16848337-16848356 | Msa0444080:intron | 35.0% | |
| GTTTATCTCTCCTACTTGTA+AGG | + | chr3_3:16848584-16848603 | Msa0444080:intron | 35.0% | |
| TTTATTTGCATCAAGTGCTC+TGG | + | chr3_3:16848819-16848838 | Msa0444080:CDS | 35.0% | |
| ACGAACGTACCTTAGATATA+TGG | - | chr3_3:16848866-16848885 | None:intergenic | 35.0% | |
| TGTCACTGAATCTAGATGAA+TGG | + | chr3_3:16848984-16849003 | Msa0444080:CDS | 35.0% | |
| ! | TCAATGGAAGAATTCGGTTT+TGG | - | chr3_3:16849103-16849122 | None:intergenic | 35.0% |
| AAAACCGAATTCTTCCATTG+AGG | + | chr3_3:16849102-16849121 | Msa0444080:CDS | 35.0% | |
| TACAAAGAAGAGTAACTCGT+TGG | + | chr3_3:16849479-16849498 | Msa0444080:CDS | 35.0% | |
| !!! | TTTTGCCTCTGGCTTTAAAT+GGG | - | chr3_3:16849799-16849818 | None:intergenic | 35.0% |
| ! | GCTTTGAGTCTCTAACATAT+AGG | - | chr3_3:16849823-16849842 | None:intergenic | 35.0% |
| ! | CTCAAGATGATTCTCAGTTT+TGG | - | chr3_3:16849993-16850012 | None:intergenic | 35.0% |
| ACTGAGAATCATCTTGAGAA+TGG | + | chr3_3:16849995-16850014 | Msa0444080:intron | 35.0% | |
| CTGAGAATCATCTTGAGAAT+GGG | + | chr3_3:16849996-16850015 | Msa0444080:intron | 35.0% | |
| CCTGCCTATAACAGTAAATA+GGG | - | chr3_3:16850101-16850120 | None:intergenic | 35.0% | |
| ACCTGCCTATAACAGTAAAT+AGG | - | chr3_3:16850102-16850121 | None:intergenic | 35.0% | |
| TTTACTGTTATAGGCAGGTA+TGG | + | chr3_3:16850103-16850122 | Msa0444080:intron | 35.0% | |
| TCACTATATCTCTGATAGCT+AGG | - | chr3_3:16850175-16850194 | None:intergenic | 35.0% | |
| CAAGAGAAAGGATGACATAA+GGG | - | chr3_3:16850205-16850224 | None:intergenic | 35.0% | |
| ATTAGGCTTTCATTCCAAAC+AGG | - | chr3_3:16850358-16850377 | None:intergenic | 35.0% | |
| !!! | TAAGCATGGAATTGGTCTTT+TGG | + | chr3_3:16850461-16850480 | Msa0444080:intron | 35.0% |
| ! | TACACCTCTAGCATCAATTT+TGG | - | chr3_3:16850554-16850573 | None:intergenic | 35.0% |
| AGAAATCGAACGCAAACTAT+AGG | - | chr3_3:16850588-16850607 | None:intergenic | 35.0% | |
| TCGTATACAATCTGCATGTA+AGG | - | chr3_3:16850646-16850665 | None:intergenic | 35.0% | |
| ! | AAATGACGATTTTATGGGAG+AGG | + | chr3_3:16850681-16850700 | Msa0444080:CDS | 35.0% |
| GACAATACACTTGTGAAAGA+TGG | + | chr3_3:16850802-16850821 | Msa0444080:CDS | 35.0% | |
| TCTCTCATCTATTGAGTAAG+AGG | - | chr3_3:16850925-16850944 | None:intergenic | 35.0% | |
| ACTCAATAGATGAGAGAGAT+AGG | + | chr3_3:16850928-16850947 | Msa0444080:exon | 35.0% | |
| ATGAGAGAGATAGGAGTAAA+GGG | + | chr3_3:16850937-16850956 | Msa0444080:three_prime_UTR | 35.0% | |
| ! | GTCTGTTTTCACAAGCAAAA+AGG | - | chr3_3:16851152-16851171 | None:intergenic | 35.0% |
| TGTAGAGAATAAGCTGCCAT+TGG | + | chr3_3:16845575-16845594 | Msa0444080:intron | 40.0% | |
| TGAAATTAGGCATGAGCCAA+TGG | - | chr3_3:16845594-16845613 | None:intergenic | 40.0% | |
| ! | TCATGCCTAATTTCAAGTGG+AGG | + | chr3_3:16845599-16845618 | Msa0444080:five_prime_UTR | 40.0% |
| ATTATATCACTTCGATGGGG+AGG | - | chr3_3:16845997-16846016 | None:intergenic | 40.0% | |
| !! | TGAAGTGTCGGTGTTACATA+CGG | - | chr3_3:16846071-16846090 | None:intergenic | 40.0% |
| GTGTGTAGTACCTATGAAGT+AGG | + | chr3_3:16846113-16846132 | Msa0444080:intron | 40.0% | |
| ! | ACAAACACTCTTCGGATTAG+GGG | - | chr3_3:16846283-16846302 | None:intergenic | 40.0% |
| CACAAACACTCTTCGGATTA+GGG | - | chr3_3:16846284-16846303 | None:intergenic | 40.0% | |
| CTGAATATAACCACCTGTGT+TGG | - | chr3_3:16846339-16846358 | None:intergenic | 40.0% | |
| TAACCAAAACAAAGAGGAGG+AGG | - | chr3_3:16846478-16846497 | None:intergenic | 40.0% | |
| ATCTCTTCTCAACCATGGAT+TGG | - | chr3_3:16846518-16846537 | None:intergenic | 40.0% | |
| TATGAAACACGGATACTCCT+CGG | + | chr3_3:16846583-16846602 | Msa0444080:intron | 40.0% | |
| TCGTCTATGAACCATGGATA+CGG | - | chr3_3:16846765-16846784 | None:intergenic | 40.0% | |
| TACTTGTCGTCTATGAACCA+TGG | - | chr3_3:16846771-16846790 | None:intergenic | 40.0% | |
| AGTGACAGTGCTACATACAA+AGG | + | chr3_3:16847366-16847385 | Msa0444080:intron | 40.0% | |
| GTGACAGTGCTACATACAAA+GGG | + | chr3_3:16847367-16847386 | Msa0444080:intron | 40.0% | |
| !! | GAAAAGCTTGACTTGCAAGA+AGG | + | chr3_3:16847535-16847554 | Msa0444080:intron | 40.0% |
| AATGTCTCAATTGTAGGGTC+AGG | + | chr3_3:16847708-16847727 | Msa0444080:intron | 40.0% | |
| AGATTGTCTAACCTTTCCTG+TGG | - | chr3_3:16847961-16847980 | None:intergenic | 40.0% | |
| !! | AACAAGTTCTGTGCTGATTG+TGG | + | chr3_3:16847997-16848016 | Msa0444080:CDS | 40.0% |
| TGGATCATCAGAGCCAAAAT+GGG | + | chr3_3:16848017-16848036 | Msa0444080:CDS | 40.0% | |
| TGAGAAGCTAAAGATGCCTT+AGG | + | chr3_3:16848190-16848209 | Msa0444080:intron | 40.0% | |
| TTAGCACTTGTGAGAGCTTA+TGG | - | chr3_3:16848515-16848534 | None:intergenic | 40.0% | |
| GGAGAGATAAACCACACTAA+GGG | - | chr3_3:16848576-16848595 | None:intergenic | 40.0% | |
| AGGAGAGATAAACCACACTA+AGG | - | chr3_3:16848577-16848596 | None:intergenic | 40.0% | |
| !! | ACTAAGAGCACCTTACAAGT+AGG | - | chr3_3:16848597-16848616 | None:intergenic | 40.0% |
| GCTCTTAGTAACATTGTCCT+CGG | + | chr3_3:16848608-16848627 | Msa0444080:intron | 40.0% | |
| AACATCAGGTCTTCAAGTCT+TGG | + | chr3_3:16848792-16848811 | Msa0444080:intron | 40.0% | |
| TCTGGTATACATAGAAGCCT+AGG | + | chr3_3:16848837-16848856 | Msa0444080:CDS | 40.0% | |
| CCTTAGATATATGGACTCCT+AGG | - | chr3_3:16848857-16848876 | None:intergenic | 40.0% | |
| CCTAGGAGTCCATATATCTA+AGG | + | chr3_3:16848854-16848873 | Msa0444080:CDS | 40.0% | |
| ! | AGACGAACAAGTCGATTCAT+TGG | + | chr3_3:16849009-16849028 | Msa0444080:CDS | 40.0% |
| ! | AGTCGATTCATTGGTCAACT+TGG | + | chr3_3:16849018-16849037 | Msa0444080:CDS | 40.0% |
| ! | GTCGATTCATTGGTCAACTT+GGG | + | chr3_3:16849019-16849038 | Msa0444080:CDS | 40.0% |
| !!! | AGGAGCGCTCTGATTTTATT+AGG | + | chr3_3:16849122-16849141 | Msa0444080:CDS | 40.0% |
| ! | TTGCAGCTCATATTTTCTCC+TGG | - | chr3_3:16849262-16849281 | None:intergenic | 40.0% |
| !! | GCAACAATTTTTGGATTCCG+AGG | + | chr3_3:16849278-16849297 | Msa0444080:CDS | 40.0% |
| GGGACAAATCAAATTCTCCT+CGG | - | chr3_3:16849298-16849317 | None:intergenic | 40.0% | |
| TTGTGGAGGATTGTAGTTTG+AGG | - | chr3_3:16849367-16849386 | None:intergenic | 40.0% | |
| GCTATCATTTCGAAACAGCT+GGG | + | chr3_3:16849431-16849450 | Msa0444080:CDS | 40.0% | |
| CTATCATTTCGAAACAGCTG+GGG | + | chr3_3:16849432-16849451 | Msa0444080:CDS | 40.0% | |
| ! | AAAACTCGGTATCTAGCTCA+AGG | + | chr3_3:16849728-16849747 | Msa0444080:intron | 40.0% |
| !! | GATTGGTCTCTCGAATTAGT+CGG | - | chr3_3:16849755-16849774 | None:intergenic | 40.0% |
| !! | TTTGCCTCTGGCTTTAAATG+GGG | - | chr3_3:16849798-16849817 | None:intergenic | 40.0% |
| !!! | GTTTTGCCTCTGGCTTTAAA+TGG | - | chr3_3:16849800-16849819 | None:intergenic | 40.0% |
| ! | AACATATAGGGTTTTGCCTC+TGG | - | chr3_3:16849810-16849829 | None:intergenic | 40.0% |
| CCCTATTTACTGTTATAGGC+AGG | + | chr3_3:16850098-16850117 | Msa0444080:intron | 40.0% | |
| GCAGGTATGGTTGAATTTGT+TGG | + | chr3_3:16850116-16850135 | Msa0444080:CDS | 40.0% | |
| CCAAGAGAAAGGATGACATA+AGG | - | chr3_3:16850206-16850225 | None:intergenic | 40.0% | |
| CCTTATGTCATCCTTTCTCT+TGG | + | chr3_3:16850203-16850222 | Msa0444080:CDS | 40.0% | |
| GTGACATGAAAACACTCACT+TGG | - | chr3_3:16850232-16850251 | None:intergenic | 40.0% | |
| TGAGCCAAAATTGATGCTAG+AGG | + | chr3_3:16850547-16850566 | Msa0444080:intron | 40.0% | |
| GTTTGCGTTCGATTTCTTTC+TGG | + | chr3_3:16850591-16850610 | Msa0444080:intron | 40.0% | |
| ! | GCTTTTGCTGCTGATACTAA+TGG | - | chr3_3:16850724-16850743 | None:intergenic | 40.0% |
| AGTCAATGCAGCTTGGAAAA+TGG | + | chr3_3:16850767-16850786 | Msa0444080:CDS | 40.0% | |
| GTCAATGCAGCTTGGAAAAT+GGG | + | chr3_3:16850768-16850787 | Msa0444080:CDS | 40.0% | |
| TGAGACAGGAAATCTCATTG+AGG | + | chr3_3:16850851-16850870 | Msa0444080:CDS | 40.0% | |
| AGGCTACAAAATGTTGAGAG+AGG | + | chr3_3:16850871-16850890 | Msa0444080:CDS | 40.0% | |
| GATGAGAGAGATAGGAGTAA+AGG | + | chr3_3:16850936-16850955 | Msa0444080:exon | 40.0% | |
| GGCTCATGCCTAATTTCAAG+TGG | + | chr3_3:16845596-16845615 | Msa0444080:five_prime_UTR | 45.0% | |
| TGGGGAGGAAGAAAGAATGA+TGG | - | chr3_3:16845982-16846001 | None:intergenic | 45.0% | |
| TGTCTGTGTCCCTACTTCAT+AGG | - | chr3_3:16846126-16846145 | None:intergenic | 45.0% | |
| ATGAAGTAGGGACACAGACA+CGG | + | chr3_3:16846126-16846145 | Msa0444080:intron | 45.0% | |
| ! | TATTATCCGTGTCGGCATGT+CGG | - | chr3_3:16846173-16846192 | None:intergenic | 45.0% |
| ! | CATAGGTGTTGTGTCACTGT+CGG | + | chr3_3:16846223-16846242 | Msa0444080:intron | 45.0% |
| GCACAAACACTCTTCGGATT+AGG | - | chr3_3:16846285-16846304 | None:intergenic | 45.0% | |
| GATACATGAGACACCAACAC+AGG | + | chr3_3:16846323-16846342 | Msa0444080:intron | 45.0% | |
| AAAACAAAGAGGAGGAGGAG+GGG | - | chr3_3:16846473-16846492 | None:intergenic | 45.0% | |
| CAAAACAAAGAGGAGGAGGA+GGG | - | chr3_3:16846474-16846493 | None:intergenic | 45.0% | |
| GCAACATCTCTTCTCAACCA+TGG | - | chr3_3:16846523-16846542 | None:intergenic | 45.0% | |
| TACGACACGAACACTGACAT+GGG | - | chr3_3:16846728-16846747 | None:intergenic | 45.0% | |
| ATACGACACGAACACTGACA+TGG | - | chr3_3:16846729-16846748 | None:intergenic | 45.0% | |
| ATGAACCATGGATACGGACA+TGG | - | chr3_3:16846759-16846778 | None:intergenic | 45.0% | |
| AACAATAGCCCTGCACCATA+TGG | + | chr3_3:16846914-16846933 | Msa0444080:intron | 45.0% | |
| AGTCACTACCATATGGTGCA+GGG | - | chr3_3:16846925-16846944 | None:intergenic | 45.0% | |
| TAGTCACTACCATATGGTGC+AGG | - | chr3_3:16846926-16846945 | None:intergenic | 45.0% | |
| ATCACTTCCCAACCTTCTCA+AGG | + | chr3_3:16847022-16847041 | Msa0444080:intron | 45.0% | |
| !! | TGAAGCACTGATACAGACAC+TGG | + | chr3_3:16847240-16847259 | Msa0444080:intron | 45.0% |
| ACAGTGCTACATACAAAGGG+AGG | + | chr3_3:16847370-16847389 | Msa0444080:intron | 45.0% | |
| CTCAAAGTCAAAGAGAGCGA+TGG | + | chr3_3:16847781-16847800 | Msa0444080:CDS | 45.0% | |
| AGAGAGCGATGGATGTTATC+TGG | + | chr3_3:16847792-16847811 | Msa0444080:CDS | 45.0% | |
| CTTGTGAGACCGGATAATGT+TGG | - | chr3_3:16847854-16847873 | None:intergenic | 45.0% | |
| TCTGCTTACTTCCGATCACT+AGG | + | chr3_3:16847934-16847953 | Msa0444080:intron | 45.0% | |
| TTTCCTGTGGACCTAGTGAT+CGG | - | chr3_3:16847948-16847967 | None:intergenic | 45.0% | |
| ACAATCTGATGCGTCAAGCA+GGG | + | chr3_3:16847974-16847993 | Msa0444080:CDS | 45.0% | |
| GTGGATCATCAGAGCCAAAA+TGG | + | chr3_3:16848016-16848035 | Msa0444080:CDS | 45.0% | |
| ATCCAAACAGTCCCTTAGTG+TGG | + | chr3_3:16848562-16848581 | Msa0444080:intron | 45.0% | |
| AACCACACTAAGGGACTGTT+TGG | - | chr3_3:16848567-16848586 | None:intergenic | 45.0% | |
| CAGCGCATTGTTTGAACATC+AGG | + | chr3_3:16848778-16848797 | Msa0444080:intron | 45.0% | |
| GATTCATTGGTCAACTTGGG+TGG | + | chr3_3:16849022-16849041 | Msa0444080:CDS | 45.0% | |
| CGCTCCTCAATGGAAGAATT+CGG | - | chr3_3:16849109-16849128 | None:intergenic | 45.0% | |
| ! | AAAATCAGAGCGCTCCTCAA+TGG | - | chr3_3:16849119-16849138 | None:intergenic | 45.0% |
| CTTGCGTGGGATGGTATAAA+GGG | - | chr3_3:16849318-16849337 | None:intergenic | 45.0% | |
| TCTTGCGTGGGATGGTATAA+AGG | - | chr3_3:16849319-16849338 | None:intergenic | 45.0% | |
| GGATGAAGTTGTTCTTGCGT+GGG | - | chr3_3:16849331-16849350 | None:intergenic | 45.0% | |
| TGGATGAAGTTGTTCTTGCG+TGG | - | chr3_3:16849332-16849351 | None:intergenic | 45.0% | |
| GGCTATCATTTCGAAACAGC+TGG | + | chr3_3:16849430-16849449 | Msa0444080:CDS | 45.0% | |
| AATCTGACTGTCCTCTAGCA+GGG | + | chr3_3:16849771-16849790 | Msa0444080:intron | 45.0% | |
| ! | TCACTTGGTGACCAAGAGAA+AGG | - | chr3_3:16850217-16850236 | None:intergenic | 45.0% |
| TAAGAGGAGGGATGTTCTCA+GGG | - | chr3_3:16850390-16850409 | None:intergenic | 45.0% | |
| TTAAGAGGAGGGATGTTCTC+AGG | - | chr3_3:16850391-16850410 | None:intergenic | 45.0% | |
| ATCATGGAGTCAATGCAGCT+TGG | + | chr3_3:16850760-16850779 | Msa0444080:CDS | 45.0% | |
| CTTGGAAAATGGGTAGCAAG+TGG | + | chr3_3:16850778-16850797 | Msa0444080:CDS | 45.0% | |
| TGAAGAAGGGAAAGTGAGAC+AGG | + | chr3_3:16850837-16850856 | Msa0444080:CDS | 45.0% | |
| !!! | CTATTTTTTTAAATTATTAT+CGG | + | chr3_3:16846365-16846384 | Msa0444080:intron | 5.0% |
| !! | AGAAAAAAAAAAAAAAAATA+GGG | + | chr3_3:16849947-16849966 | Msa0444080:intron | 5.0% |
| !! | TCTTCGGATTAGGGGTGTTC+CGG | - | chr3_3:16846275-16846294 | None:intergenic | 50.0% |
| ACATGAGACACCAACACAGG+TGG | + | chr3_3:16846326-16846345 | Msa0444080:intron | 50.0% | |
| CCAAAACAAAGAGGAGGAGG+AGG | - | chr3_3:16846475-16846494 | None:intergenic | 50.0% | |
| !! | CCTCCTCCTCCTCTTTGTTT+TGG | + | chr3_3:16846472-16846491 | Msa0444080:intron | 50.0% |
| ACACGGATACTCCTCGGATT+AGG | + | chr3_3:16846589-16846608 | Msa0444080:intron | 50.0% | |
| ACTGAGACACTCCTAATCCG+AGG | - | chr3_3:16846603-16846622 | None:intergenic | 50.0% | |
| GTCAGTGTTCGTGTCGTATC+CGG | + | chr3_3:16846730-16846749 | Msa0444080:intron | 50.0% | |
| ATGGATACGGACATGGACAC+CGG | - | chr3_3:16846752-16846771 | None:intergenic | 50.0% | |
| GATCACTAGGTCCACAGGAA+AGG | + | chr3_3:16847947-16847966 | Msa0444080:intron | 50.0% | |
| GACAATCTGATGCGTCAAGC+AGG | + | chr3_3:16847973-16847992 | Msa0444080:CDS | 50.0% | |
| GAAGTTGTTCTTGCGTGGGA+TGG | - | chr3_3:16849327-16849346 | None:intergenic | 50.0% | |
| GTTTGAGGAACTGCTCTGAC+TGG | - | chr3_3:16849352-16849371 | None:intergenic | 50.0% | |
| CTGCTAGAGGACAGTCAGAT+TGG | - | chr3_3:16849772-16849791 | None:intergenic | 50.0% | |
| CAATCTGACTGTCCTCTAGC+AGG | + | chr3_3:16849770-16849789 | Msa0444080:intron | 50.0% | |
| ATCTGACTGTCCTCTAGCAG+GGG | + | chr3_3:16849772-16849791 | Msa0444080:intron | 50.0% | |
| GGTGTCCATGTCCGTATCCA+TGG | + | chr3_3:16846751-16846770 | Msa0444080:intron | 55.0% | |
| CTTCCGATCACTAGGTCCAC+AGG | + | chr3_3:16847942-16847961 | Msa0444080:intron | 55.0% | |
| TTAAATGGGGCCCCTGCTAG+AGG | - | chr3_3:16849785-16849804 | None:intergenic | 55.0% | |
| AGGGACACAGACACGGACAC+CGG | + | chr3_3:16846133-16846152 | Msa0444080:intron | 60.0% | |
| ! | TTCCGGTGTCAGACACGCGT+CGG | - | chr3_3:16846258-16846277 | None:intergenic | 60.0% |
| GAGTCGGACACGACACGTGT+TGG | - | chr3_3:16846628-16846647 | None:intergenic | 60.0% | |
| ! | GGGGCCCCATTTAAAGCCAG+AGG | + | chr3_3:16849791-16849810 | Msa0444080:intron | 60.0% |
| CGGACACCGACATGCCGACA+CGG | + | chr3_3:16846164-16846183 | Msa0444080:intron | 65.0% | |
| CACCGACGCGTGTCTGACAC+CGG | + | chr3_3:16846253-16846272 | Msa0444080:intron | 65.0% | |
| CACGGACACCGGACACGACG+CGG | + | chr3_3:16846144-16846163 | Msa0444080:intron | 70.0% | |
| ! | GTCGGTGTCCGCGTCGTGTC+CGG | - | chr3_3:16846155-16846174 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 16845378 | 16851176 | 16845378 | ID=Msa0444080;Name=Msa0444080 |
| chr3_3 | mRNA | 16845378 | 16851176 | 16845378 | ID=Msa0444080-mRNA-1;Parent=Msa0444080;Name=Msa0444080-mRNA-1;_AED=0.05;_eAED=0.05;_QI=247|1|1|1|0.8|0.72|11|240|397 |
| chr3_3 | exon | 16845378 | 16845487 | 16845378 | ID=Msa0444080-mRNA-1:exon:3488;Parent=Msa0444080-mRNA-1 |
| chr3_3 | exon | 16845580 | 16845639 | 16845580 | ID=Msa0444080-mRNA-1:exon:3489;Parent=Msa0444080-mRNA-1 |
| chr3_3 | exon | 16845834 | 16845956 | 16845834 | ID=Msa0444080-mRNA-1:exon:3490;Parent=Msa0444080-mRNA-1 |
| chr3_3 | exon | 16847724 | 16847813 | 16847724 | ID=Msa0444080-mRNA-1:exon:3491;Parent=Msa0444080-mRNA-1 |
| chr3_3 | exon | 16847956 | 16848040 | 16847956 | ID=Msa0444080-mRNA-1:exon:3492;Parent=Msa0444080-mRNA-1 |
| chr3_3 | exon | 16848800 | 16848875 | 16848800 | ID=Msa0444080-mRNA-1:exon:3493;Parent=Msa0444080-mRNA-1 |
| chr3_3 | exon | 16848980 | 16849143 | 16848980 | ID=Msa0444080-mRNA-1:exon:3494;Parent=Msa0444080-mRNA-1 |
| chr3_3 | exon | 16849263 | 16849500 | 16849263 | ID=Msa0444080-mRNA-1:exon:3495;Parent=Msa0444080-mRNA-1 |
| chr3_3 | exon | 16850116 | 16850232 | 16850116 | ID=Msa0444080-mRNA-1:exon:3496;Parent=Msa0444080-mRNA-1 |
| chr3_3 | exon | 16850319 | 16850414 | 16850319 | ID=Msa0444080-mRNA-1:exon:3497;Parent=Msa0444080-mRNA-1 |
| chr3_3 | exon | 16850655 | 16851176 | 16850655 | ID=Msa0444080-mRNA-1:exon:3498;Parent=Msa0444080-mRNA-1 |
| chr3_3 | five_prime_UTR | 16845378 | 16845487 | 16845378 | ID=Msa0444080-mRNA-1:five_prime_utr;Parent=Msa0444080-mRNA-1 |
| chr3_3 | five_prime_UTR | 16845580 | 16845639 | 16845580 | ID=Msa0444080-mRNA-1:five_prime_utr;Parent=Msa0444080-mRNA-1 |
| chr3_3 | five_prime_UTR | 16845834 | 16845910 | 16845834 | ID=Msa0444080-mRNA-1:five_prime_utr;Parent=Msa0444080-mRNA-1 |
| chr3_3 | CDS | 16845911 | 16845956 | 16845911 | ID=Msa0444080-mRNA-1:cds;Parent=Msa0444080-mRNA-1 |
| chr3_3 | CDS | 16847724 | 16847813 | 16847724 | ID=Msa0444080-mRNA-1:cds;Parent=Msa0444080-mRNA-1 |
| chr3_3 | CDS | 16847956 | 16848040 | 16847956 | ID=Msa0444080-mRNA-1:cds;Parent=Msa0444080-mRNA-1 |
| chr3_3 | CDS | 16848800 | 16848875 | 16848800 | ID=Msa0444080-mRNA-1:cds;Parent=Msa0444080-mRNA-1 |
| chr3_3 | CDS | 16848980 | 16849143 | 16848980 | ID=Msa0444080-mRNA-1:cds;Parent=Msa0444080-mRNA-1 |
| chr3_3 | CDS | 16849263 | 16849500 | 16849263 | ID=Msa0444080-mRNA-1:cds;Parent=Msa0444080-mRNA-1 |
| chr3_3 | CDS | 16850116 | 16850232 | 16850116 | ID=Msa0444080-mRNA-1:cds;Parent=Msa0444080-mRNA-1 |
| chr3_3 | CDS | 16850319 | 16850414 | 16850319 | ID=Msa0444080-mRNA-1:cds;Parent=Msa0444080-mRNA-1 |
| chr3_3 | CDS | 16850655 | 16850936 | 16850655 | ID=Msa0444080-mRNA-1:cds;Parent=Msa0444080-mRNA-1 |
| chr3_3 | three_prime_UTR | 16850937 | 16851176 | 16850937 | ID=Msa0444080-mRNA-1:three_prime_utr;Parent=Msa0444080-mRNA-1 |
| Gene Sequence |
| Protein sequence |
