AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0827920


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0827920 MtrunA17_Chr2g0331051 97.654 341 7 1 35 375 1 340 0.0 695
Msa0827920 MtrunA17_Chr8g0340671 85.357 280 40 1 96 375 9 287 1.01e-175 503
Msa0827920 MtrunA17_Chr8g0389961 75.258 291 71 1 85 375 1 290 2.39e-160 463
Msa0827920 MtrunA17_Chr3g0140501 77.239 268 60 1 108 375 11 277 6.94e-154 446
Msa0827920 MtrunA17_Chr8g0349861 45.570 237 119 1 136 362 33 269 3.58e-69 228
Msa0827920 MtrunA17_Chr8g0337031 43.825 251 121 2 123 353 28 278 3.58e-69 229
Msa0827920 MtrunA17_Chr7g0247001 45.570 237 119 1 136 362 30 266 8.30e-68 224
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0827920 AT1G79750.1 76.080 301 70 2 75 375 47 345 2.04e-165 478
Msa0827920 AT5G11670.1 78.058 278 59 2 99 375 11 287 4.64e-157 454
Msa0827920 AT5G25880.3 76.866 268 61 1 108 375 21 287 6.78e-154 444
Msa0827920 AT2G19900.1 77.154 267 60 1 109 375 15 280 1.21e-153 446
Msa0827920 AT5G25880.2 76.866 268 61 1 108 375 21 287 1.24e-152 442
Msa0827920 AT5G25880.1 76.866 268 61 1 108 375 21 287 2.94e-152 442
Msa0827920 AT2G19900.2 81.868 182 32 1 194 375 1 181 3.78e-105 318
Msa0827920 AT2G13560.1 46.930 228 111 1 136 353 46 273 5.98e-68 226
Msa0827920 AT4G00570.1 44.304 237 122 1 136 362 39 275 3.28e-67 223

Find 111 sgRNAs with CRISPR-Local

Find 206 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAATTTATTTCCTGGCTTAC+CGG 0.269879 5_3:+69809384 Msa0827920:CDS
CTCAATGATGAATTATATAT+CGG 0.286816 5_3:+69809238 Msa0827920:CDS
TTCAAGAAGTACTGAGAAAT+TGG 0.292051 5_3:+69808762 Msa0827920:CDS
AAAAGGCACAATTTATTTCC+TGG 0.307020 5_3:+69809376 Msa0827920:CDS
ACCTTTGAAAGAAATTAAAA+AGG 0.309592 5_3:+69807444 Msa0827920:CDS
GGAAGAAGTTGAGGGTAGTT+TGG 0.339854 5_3:+69806568 Msa0827920:five_prime_UTR
GAGCAGGGTTGCTCAGGATT+AGG 0.343833 5_3:+69807310 Msa0827920:intron
CGCAACCAGATGCACCTTCC+TGG 0.347752 5_3:+69806948 Msa0827920:CDS
CATGGCAATGATGGATCTTC+AGG 0.348590 5_3:+69808235 Msa0827920:CDS
GAGAACGGATCTTGGGTCTT+GGG 0.354537 5_3:+69808822 Msa0827920:CDS
CTGCCATTTCTATCATTGAT+TGG 0.363401 5_3:-69807400 None:intergenic
ATCTTGGGTCTTGGGGATCT+AGG 0.377783 5_3:+69808830 Msa0827920:CDS
AACTGACGGAGAACGGATCT+TGG 0.382641 5_3:+69808814 Msa0827920:CDS
CTAAAGCAAAGACGAGCAAC+TGG 0.382953 5_3:+69809262 Msa0827920:CDS
TTTCTTGAGGAATAGTTGTT+GGG 0.398481 5_3:-69808154 None:intergenic
GGCGGTCCTCGTGATGTTTA+CGG 0.403565 5_3:+69807508 Msa0827920:CDS
TGATGTTTACGGCGAGGATA+AGG 0.403820 5_3:+69807519 Msa0827920:CDS
TCTGCAGCGGAACTTGATAT+TGG 0.406075 5_3:-69808208 None:intergenic
GTTTCTTGAGGAATAGTTGT+TGG 0.410920 5_3:-69808155 None:intergenic
TTTGTGAGGTCACCTTAAAA+AGG 0.413924 5_3:-69806655 None:intergenic
GGAGAACGGATCTTGGGTCT+TGG 0.422394 5_3:+69808821 Msa0827920:CDS
GTCCCAACGTCAATAGTAAT+AGG 0.429982 5_3:-69809199 None:intergenic
GGCGAGGCTTGCCAGAAATA+CGG 0.435554 5_3:+69808550 Msa0827920:CDS
TCACCAATCAATGATAGAAA+TGG 0.438037 5_3:+69807397 Msa0827920:CDS
TATTACGAGCAGGGTTGCTC+AGG 0.442722 5_3:+69807304 Msa0827920:intron
GATTACCAGGAAGGTGCATC+TGG 0.447748 5_3:-69806953 None:intergenic
ATGACTTGAATGTTCTTCTC+AGG 0.450733 5_3:-69808785 None:intergenic
TCTTGGGGATCTAGGTTGTC+AGG 0.451273 5_3:+69808838 Msa0827920:CDS
ACTGACGGAGAACGGATCTT+GGG 0.451817 5_3:+69808815 Msa0827920:CDS
GCGAGGCTTGCCAGAAATAC+GGG 0.458405 5_3:+69808551 Msa0827920:CDS
TGCCTATTACTATTGACGTT+GGG 0.467929 5_3:+69809197 Msa0827920:CDS
AGGATCACTTTGTGACTCCT+TGG 0.470415 5_3:+69807548 Msa0827920:CDS
TGGGAAATGGTGTTCAATCC+TGG 0.472484 5_3:+69806603 Msa0827920:CDS
CTTGGAGTGTTTCTGTTGCT+AGG 0.475788 5_3:+69807566 Msa0827920:CDS
CTTGATATTGGCGTATGTGC+TGG 0.477673 5_3:-69808196 None:intergenic
CTTTCTTTATATACTGCACT+AGG 0.479696 5_3:+69808993 Msa0827920:CDS
GTAGATGATAATCCGATCTC+TGG 0.489891 5_3:+69807484 Msa0827920:CDS
AACTTGTTTCAACAAGTGCC+AGG 0.492140 5_3:-69806621 None:intergenic
TAGTTTGGTAAGACCGAGGA+TGG 0.494244 5_3:+69806583 Msa0827920:exon
GCAGAGATACATGGCAATGA+TGG 0.495415 5_3:+69808226 Msa0827920:CDS
GGTGGACAAAGAAGGGGTTA+TGG 0.497198 5_3:+69807352 Msa0827920:CDS
CAGGAAGGTGCATCTGGTTG+CGG 0.497828 5_3:-69806947 None:intergenic
GTCTTAATTCAGGTATCAAT+CGG 0.501097 5_3:+69809349 Msa0827920:CDS
AGATTACAGTCCGGTAAGCC+AGG 0.501801 5_3:-69809394 None:intergenic
AGGTATCAATCGGTATCAAA+AGG 0.505301 5_3:+69809359 Msa0827920:CDS
CGAGATCCACACTTCAACAA+AGG 0.513276 5_3:+69808077 Msa0827920:CDS
TTCCTCACCTGAGTTTCTTG+AGG 0.515530 5_3:-69808167 None:intergenic
GTAAGACCGAGGATGGGAAA+TGG 0.515743 5_3:+69806590 Msa0827920:exon
CATTTCTGATACAGCAAAGC+AGG 0.516038 5_3:+69806887 Msa0827920:intron
TGCTCAGGATTAGGTGGGAG+TGG 0.522946 5_3:+69807319 Msa0827920:CDS
CAGTTGGAGTATACACGATT+GGG 0.524429 5_3:-69808525 None:intergenic
TGGCAAGCCTCGCCAACAGT+TGG 0.524943 5_3:-69808541 None:intergenic
CATCTGTGGTGGACAAAGAA+GGG 0.527534 5_3:+69807345 Msa0827920:CDS
ACATCTGTGGTGGACAAAGA+AGG 0.527702 5_3:+69807344 Msa0827920:CDS
TCAATGATGAATTATATATC+GGG 0.527768 5_3:+69809239 Msa0827920:CDS
TTCTTAGGGAATGGGAATAC+CGG 0.532496 5_3:+69808962 Msa0827920:intron
AGAACGGATCTTGGGTCTTG+GGG 0.533680 5_3:+69808823 Msa0827920:CDS
GAGATCCACACTTCAACAAA+GGG 0.535263 5_3:+69808078 Msa0827920:CDS
AAAGAAGGGGTTATGGACCT+TGG 0.537944 5_3:+69807359 Msa0827920:CDS
TGAACACCATTTCCCATCCT+CGG 0.538701 5_3:-69806596 None:intergenic
ACAGTTGGAGTATACACGAT+TGG 0.538743 5_3:-69808526 None:intergenic
CAGGGTTGCTCAGGATTAGG+TGG 0.538947 5_3:+69807313 Msa0827920:intron
AACTATTCCTCAAGAAACTC+AGG 0.543335 5_3:+69808160 Msa0827920:CDS
TAGTCGTAACTGACGGAGAA+CGG 0.544724 5_3:+69808807 Msa0827920:CDS
GCAAAGACGAGCAACTGGGC+AGG 0.551006 5_3:+69809267 Msa0827920:CDS
GAAGGGGTTATGGACCTTGG+AGG 0.553034 5_3:+69807362 Msa0827920:CDS
GAGAAAATGGATTACCAGGA+AGG 0.553962 5_3:-69806962 None:intergenic
GCCAACCCTTTGTTGAAGTG+TGG 0.558358 5_3:-69808083 None:intergenic
ACTGCAGTCAAGCAAACTTA+CGG 0.561180 5_3:+69809319 Msa0827920:CDS
CTGCCTATTACTATTGACGT+TGG 0.562046 5_3:+69809196 Msa0827920:CDS
TTCTTGAGGAATAGTTGTTG+GGG 0.562054 5_3:-69808153 None:intergenic
CAACGTCAATAGTAATAGGC+AGG 0.562884 5_3:-69809195 None:intergenic
AGTTCCGCTGCAGAGATACA+TGG 0.564512 5_3:+69808217 Msa0827920:CDS
CGAGGACCGCCACCAGAGAT+CGG 0.565872 5_3:-69807496 None:intergenic
GACATACACGTCACCCTCCA+AGG 0.567462 5_3:-69807376 None:intergenic
AAGGGGTTATGGACCTTGGA+GGG 0.574548 5_3:+69807363 Msa0827920:CDS
GGTTGCGGAGATCATGATGA+TGG 0.581814 5_3:-69806932 None:intergenic
TGGCAGTGTTGTTAATGTGA+TGG 0.582189 5_3:+69807417 Msa0827920:CDS
TGAAATATACTTACAGCTGA+AGG 0.582276 5_3:-69809026 None:intergenic
ATCGTGTATACTCCAACTGT+TGG 0.586387 5_3:+69808529 Msa0827920:CDS
TCCACACTTCAACAAAGGGT+TGG 0.604356 5_3:+69808082 Msa0827920:CDS
GATGATAATCCGATCTCTGG+TGG 0.606918 5_3:+69807487 Msa0827920:CDS
GTATACTCCAACTGTTGGCG+AGG 0.612280 5_3:+69808534 Msa0827920:CDS
GATAATCCGATCTCTGGTGG+CGG 0.626841 5_3:+69807490 Msa0827920:CDS
GGAGATCATGATGATGGGTA+TGG 0.627196 5_3:-69806926 None:intergenic
AGGGTTGCTCAGGATTAGGT+GGG 0.630605 5_3:+69807314 Msa0827920:intron
ATCTGTGGTGGACAAAGAAG+GGG 0.631306 5_3:+69807346 Msa0827920:CDS
GGGAGTGGTAACATCTGTGG+TGG 0.633634 5_3:+69807334 Msa0827920:CDS
AATTAGTACAGATTACAGTC+CGG 0.643738 5_3:-69809403 None:intergenic
TTCCTCAAGAAACTCAGGTG+AGG 0.644386 5_3:+69808165 Msa0827920:CDS
TCTTTATATACTGCACTAGG+AGG 0.647726 5_3:+69808996 Msa0827920:CDS
ATTGCCATGTATCTCTGCAG+CGG 0.652441 5_3:-69808221 None:intergenic
TAAAGCAAAGACGAGCAACT+GGG 0.653376 5_3:+69809263 Msa0827920:CDS
CAAGTCATAGTCGTAACTGA+CGG 0.653587 5_3:+69808800 Msa0827920:CDS
TCCTCGTGATGTTTACGGCG+AGG 0.654154 5_3:+69807513 Msa0827920:CDS
GGTGGGAGTGGTAACATCTG+TGG 0.657067 5_3:+69807331 Msa0827920:CDS
TTAGGGAATGGGAATACCGG+TGG 0.661512 5_3:+69808965 Msa0827920:intron
TCTTGAGGAATAGTTGTTGG+GGG 0.666205 5_3:-69808152 None:intergenic
AGTTTGGTAAGACCGAGGAT+GGG 0.666330 5_3:+69806584 Msa0827920:exon
TAGGGAATGGGAATACCGGT+GGG 0.671378 5_3:+69808966 Msa0827920:intron
ATCATCTACATCTTCCACCA+CGG 0.673365 5_3:-69807470 None:intergenic
ACGTTGGGACAAACAACGAG+AGG 0.675167 5_3:+69809212 Msa0827920:CDS
TCCTCGCCGTAAACATCACG+AGG 0.677177 5_3:-69807514 None:intergenic
GTTGCGGAGATCATGATGAT+GGG 0.677547 5_3:-69806931 None:intergenic
AGGGATGCACACTACTTGCG+TGG 0.680318 5_3:+69808122 Msa0827920:CDS
AGGGTAGTTTGGTAAGACCG+AGG 0.680927 5_3:+69806579 Msa0827920:five_prime_UTR
CGAGGCTTGCCAGAAATACG+GGG 0.683912 5_3:+69808552 Msa0827920:CDS
CTAGCAACAGAAACACTCCA+AGG 0.695145 5_3:-69807565 None:intergenic
CGGCGAGGATAAGGCCACTG+AGG 0.703363 5_3:+69807528 Msa0827920:CDS
AAACTTATATAAAGACCCTG+TGG 0.705672 5_3:-69808589 None:intergenic
AGTCACAAAGTGATCCTCAG+TGG 0.733513 5_3:-69807542 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTAATTTTTTTCATTTTGA+TGG + chr5_3:69807277-69807296 Msa0827920:intron 10.0%
!! GTTAAAACATAAAAAAATAA+TGG - chr5_3:69807649-69807668 None:intergenic 10.0%
!! TCTAAATCACAAAATAAATA+TGG + chr5_3:69806983-69807002 Msa0827920:intron 15.0%
!!! ATTAGTTGATTTATTTATCT+GGG + chr5_3:69807230-69807249 Msa0827920:intron 15.0%
!!! TTAATTTAATTTAATAAGGG+AGG + chr5_3:69807798-69807817 Msa0827920:intron 15.0%
!! GATAACATTAAAGATTTAAT+AGG - chr5_3:69809156-69809175 None:intergenic 15.0%
!!! ATTTTGTGATTTAGAGAAAA+TGG - chr5_3:69806978-69806997 None:intergenic 20.0%
!! TTAAATATTCAACAAGTTTC+TGG + chr5_3:69807011-69807030 Msa0827920:intron 20.0%
!! TAAATATTCAACAAGTTTCT+GGG + chr5_3:69807012-69807031 Msa0827920:intron 20.0%
!!! GATTAGTTGATTTATTTATC+TGG + chr5_3:69807229-69807248 Msa0827920:intron 20.0%
!!! ACCTTTGAAAGAAATTAAAA+AGG + chr5_3:69807444-69807463 Msa0827920:CDS 20.0%
!!! TCCTTTTTAATTTCTTTCAA+AGG - chr5_3:69807448-69807467 None:intergenic 20.0%
!! TTTGAAAGAAATTAAAAAGG+AGG + chr5_3:69807447-69807466 Msa0827920:CDS 20.0%
!!! CAATCAAATTTCAAATTTTC+AGG - chr5_3:69807738-69807757 None:intergenic 20.0%
!! AACATATGACGATATAAATT+AGG - chr5_3:69807871-69807890 None:intergenic 20.0%
!!! GTTTTGACAATGTTAAAAAA+GGG - chr5_3:69808288-69808307 None:intergenic 20.0%
!!! AGTTTTGACAATGTTAAAAA+AGG - chr5_3:69808289-69808308 None:intergenic 20.0%
!! TTAATGTAAAAACCATATGT+TGG + chr5_3:69808364-69808383 Msa0827920:intron 20.0%
!!! TTTATTGTTTCTTTTTCTCT+TGG + chr5_3:69808713-69808732 Msa0827920:intron 20.0%
!!! TTATTGTTTCTTTTTCTCTT+GGG + chr5_3:69808714-69808733 Msa0827920:intron 20.0%
!! CTCAATGATGAATTATATAT+CGG + chr5_3:69809238-69809257 Msa0827920:CDS 20.0%
!! TCAATGATGAATTATATATC+GGG + chr5_3:69809239-69809258 Msa0827920:CDS 20.0%
! ATTAGCTGATATATTCATCT+GGG + chr5_3:69807095-69807114 Msa0827920:intron 25.0%
!! TATTAACGTTCACAATTTTC+TGG + chr5_3:69807124-69807143 Msa0827920:intron 25.0%
!! ATTAACGTTCACAATTTTCT+GGG + chr5_3:69807125-69807144 Msa0827920:intron 25.0%
! TCAAATATGAATCTAGCAAA+GGG - chr5_3:69807671-69807690 None:intergenic 25.0%
! ATCAAATATGAATCTAGCAA+AGG - chr5_3:69807672-69807691 None:intergenic 25.0%
! AATTCAAAATATTGCCAATC+AGG - chr5_3:69808409-69808428 None:intergenic 25.0%
! CTTTCACTTTGATATATTGT+TGG + chr5_3:69808440-69808459 Msa0827920:intron 25.0%
!!! TATTGTTTCTTTTTCTCTTG+GGG + chr5_3:69808715-69808734 Msa0827920:intron 25.0%
! AATACAAAATAGGTTGTCAA+AGG - chr5_3:69808944-69808963 None:intergenic 25.0%
!! ACAACCTATTTTGTATTCTT+AGG + chr5_3:69808947-69808966 Msa0827920:intron 25.0%
!! CAACCTATTTTGTATTCTTA+GGG + chr5_3:69808948-69808967 Msa0827920:intron 25.0%
! ATTCCCTAAGAATACAAAAT+AGG - chr5_3:69808954-69808973 None:intergenic 25.0%
!! TATTTTGTATTCTTAGGGAA+TGG + chr5_3:69808953-69808972 Msa0827920:intron 25.0%
!! ATTTTGTATTCTTAGGGAAT+GGG + chr5_3:69808954-69808973 Msa0827920:intron 25.0%
! TTTACAGTAGGCATTATTTA+CGG - chr5_3:69809073-69809092 None:intergenic 25.0%
! GATACTTCATTTCCTATTAT+TGG + chr5_3:69809106-69809125 Msa0827920:intron 25.0%
! TGTGTTGTTGGAATGAATTA+TGG - chr5_3:69806694-69806713 None:intergenic 30.0%
AAGAGAAATGAATGTGTTGT+TGG - chr5_3:69806706-69806725 None:intergenic 30.0%
TATAGAGAGAGAGATTGTTA+AGG - chr5_3:69806845-69806864 None:intergenic 30.0%
!! TTTAGAGAAAATGGATTACC+AGG - chr5_3:69806969-69806988 None:intergenic 30.0%
! GATTAGCTGATATATTCATC+TGG + chr5_3:69807094-69807113 Msa0827920:intron 30.0%
TCACCAATCAATGATAGAAA+TGG + chr5_3:69807397-69807416 Msa0827920:CDS 30.0%
TAATGGCATGATCAAAATCA+AGG - chr5_3:69807632-69807651 None:intergenic 30.0%
TAAGAGTTCTGTATGTATGT+TGG + chr5_3:69807997-69808016 Msa0827920:intron 30.0%
!!! GGTTGATTCTTTGTTTTTAG+TGG + chr5_3:69808041-69808060 Msa0827920:intron 30.0%
TTTCTTGAGGAATAGTTGTT+GGG - chr5_3:69808157-69808176 None:intergenic 30.0%
AACAAAAAACCAAAGAAGGT+GGG - chr5_3:69808312-69808331 None:intergenic 30.0%
CATGAACAAAAAACCAAAGA+AGG - chr5_3:69808316-69808335 None:intergenic 30.0%
ATGTAAAAACCATATGTTGG+TGG + chr5_3:69808367-69808386 Msa0827920:intron 30.0%
AATTAACTTCCACCAACATA+TGG - chr5_3:69808379-69808398 None:intergenic 30.0%
! TTTGATATATTGTTGGTTGC+AGG + chr5_3:69808447-69808466 Msa0827920:intron 30.0%
AAACTTATATAAAGACCCTG+TGG - chr5_3:69808592-69808611 None:intergenic 30.0%
AAAATTCTACGAGGATAAAC+AGG - chr5_3:69808643-69808662 None:intergenic 30.0%
TTGCAACAAAAAATTCTACG+AGG - chr5_3:69808652-69808671 None:intergenic 30.0%
!! ATTGTTTCTTTTTCTCTTGG+GGG + chr5_3:69808716-69808735 Msa0827920:intron 30.0%
!! TTCAAGAAGTACTGAGAAAT+TGG + chr5_3:69808762-69808781 Msa0827920:CDS 30.0%
! TATAAAGAAAGTTTTCCCAC+CGG - chr5_3:69808984-69809003 None:intergenic 30.0%
CTTTCTTTATATACTGCACT+AGG + chr5_3:69808993-69809012 Msa0827920:CDS 30.0%
TGAAATATACTTACAGCTGA+AGG - chr5_3:69809029-69809048 None:intergenic 30.0%
TTACAGTAGGCATTATTTAC+GGG - chr5_3:69809072-69809091 None:intergenic 30.0%
GATCATTGTAAGTTTACAGT+AGG - chr5_3:69809085-69809104 None:intergenic 30.0%
CACTATGCATAACCAATAAT+AGG - chr5_3:69809121-69809140 None:intergenic 30.0%
!! AGGCACTGTAATGATTTTAA+CGG - chr5_3:69809178-69809197 None:intergenic 30.0%
GTCTTAATTCAGGTATCAAT+CGG + chr5_3:69809349-69809368 Msa0827920:CDS 30.0%
! AAAAGGCACAATTTATTTCC+TGG + chr5_3:69809376-69809395 Msa0827920:CDS 30.0%
TTTGTGAGGTCACCTTAAAA+AGG - chr5_3:69806658-69806677 None:intergenic 35.0%
TGATGGAAATTATTACGAGC+AGG + chr5_3:69807294-69807313 Msa0827920:intron 35.0%
GATGGAAATTATTACGAGCA+GGG + chr5_3:69807295-69807314 Msa0827920:intron 35.0%
! CTGCCATTTCTATCATTGAT+TGG - chr5_3:69807403-69807422 None:intergenic 35.0%
!!! TTTTCAGGTACACCAATTGA+GGG - chr5_3:69807723-69807742 None:intergenic 35.0%
!!! ATTTTCAGGTACACCAATTG+AGG - chr5_3:69807724-69807743 None:intergenic 35.0%
TGATCCATGTTCTTACATGT+TGG + chr5_3:69808020-69808039 Msa0827920:intron 35.0%
TCAACCAACATGTAAGAACA+TGG - chr5_3:69808027-69808046 None:intergenic 35.0%
!!! ATCCCTCTCTTTTTCAGTAA+AGG - chr5_3:69808108-69808127 None:intergenic 35.0%
TTCTTGAGGAATAGTTGTTG+GGG - chr5_3:69808156-69808175 None:intergenic 35.0%
GTTTCTTGAGGAATAGTTGT+TGG - chr5_3:69808158-69808177 None:intergenic 35.0%
AACTATTCCTCAAGAAACTC+AGG + chr5_3:69808160-69808179 Msa0827920:CDS 35.0%
GACGACATAAAATGTTGACA+AGG - chr5_3:69808266-69808285 None:intergenic 35.0%
GAACAAAAAACCAAAGAAGG+TGG - chr5_3:69808313-69808332 None:intergenic 35.0%
TTGGTGGAAGTTAATTCACA+TGG + chr5_3:69808383-69808402 Msa0827920:intron 35.0%
TAAAAATGTCCCCGTATTTC+TGG - chr5_3:69808564-69808583 None:intergenic 35.0%
TAGAATAGAGACTCGATCAA+AGG - chr5_3:69808679-69808698 None:intergenic 35.0%
!! TTGTTTCTTTTTCTCTTGGG+GGG + chr5_3:69808717-69808736 Msa0827920:intron 35.0%
!! TTGGGGGGTGTTTAAATTAT+AGG + chr5_3:69808732-69808751 Msa0827920:intron 35.0%
!! TGGGGGGTGTTTAAATTATA+GGG + chr5_3:69808733-69808752 Msa0827920:intron 35.0%
ATGACTTGAATGTTCTTCTC+AGG - chr5_3:69808788-69808807 None:intergenic 35.0%
TCTTTATATACTGCACTAGG+AGG + chr5_3:69808996-69809015 Msa0827920:CDS 35.0%
TGCCTATTACTATTGACGTT+GGG + chr5_3:69809197-69809216 Msa0827920:CDS 35.0%
CGGTGAAAAAGTCTTAATTC+AGG + chr5_3:69809339-69809358 Msa0827920:CDS 35.0%
AGGTATCAATCGGTATCAAA+AGG + chr5_3:69809359-69809378 Msa0827920:CDS 35.0%
CAATTTATTTCCTGGCTTAC+CGG + chr5_3:69809384-69809403 Msa0827920:CDS 35.0%
! AACTTGTTTCAACAAGTGCC+AGG - chr5_3:69806624-69806643 None:intergenic 40.0%
! TGCGAGTTCCAACCTTTTTA+AGG + chr5_3:69806643-69806662 Msa0827920:CDS 40.0%
TGAGGTCACCTTAAAAAGGT+TGG - chr5_3:69806654-69806673 None:intergenic 40.0%
! GAAGTGAAACACGTTTTGTG+AGG - chr5_3:69806672-69806691 None:intergenic 40.0%
AAACTCAACTCAGCATCATC+AGG + chr5_3:69806777-69806796 Msa0827920:intron 40.0%
CATTTCTGATACAGCAAAGC+AGG + chr5_3:69806887-69806906 Msa0827920:intron 40.0%
!! GAGAAAATGGATTACCAGGA+AGG - chr5_3:69806965-69806984 None:intergenic 40.0%
! TGGCAGTGTTGTTAATGTGA+TGG + chr5_3:69807417-69807436 Msa0827920:CDS 40.0%
AGAAATTAAAAAGGAGGCCG+TGG + chr5_3:69807453-69807472 Msa0827920:CDS 40.0%
ATCATCTACATCTTCCACCA+CGG - chr5_3:69807473-69807492 None:intergenic 40.0%
GTAGATGATAATCCGATCTC+TGG + chr5_3:69807484-69807503 Msa0827920:CDS 40.0%
CATAGACAACACAGCAAACA+AGG - chr5_3:69807695-69807714 None:intergenic 40.0%
! TTTCAGGTACACCAATTGAG+GGG - chr5_3:69807722-69807741 None:intergenic 40.0%
GAGATCCACACTTCAACAAA+GGG + chr5_3:69808078-69808097 Msa0827920:CDS 40.0%
TGGCCTTTACTGAAAAAGAG+AGG + chr5_3:69808102-69808121 Msa0827920:CDS 40.0%
GGCCTTTACTGAAAAAGAGA+GGG + chr5_3:69808103-69808122 Msa0827920:CDS 40.0%
TCTTGAGGAATAGTTGTTGG+GGG - chr5_3:69808155-69808174 None:intergenic 40.0%
GTTAATTCACATGGCCTGAT+TGG + chr5_3:69808392-69808411 Msa0827920:intron 40.0%
CAGTTGGAGTATACACGATT+GGG - chr5_3:69808528-69808547 None:intergenic 40.0%
ACAGTTGGAGTATACACGAT+TGG - chr5_3:69808529-69808548 None:intergenic 40.0%
ATCGTGTATACTCCAACTGT+TGG + chr5_3:69808529-69808548 Msa0827920:CDS 40.0%
! GACATTTTTATGCGTCCACA+GGG + chr5_3:69808574-69808593 Msa0827920:CDS 40.0%
ATTCTACGAGGATAAACAGG+CGG - chr5_3:69808640-69808659 None:intergenic 40.0%
!! GGGGGGTGTTTAAATTATAG+GGG + chr5_3:69808734-69808753 Msa0827920:intron 40.0%
!! GGGGGTGTTTAAATTATAGG+GGG + chr5_3:69808735-69808754 Msa0827920:intron 40.0%
GGTGTTTAAATTATAGGGGG+AGG + chr5_3:69808738-69808757 Msa0827920:intron 40.0%
CAAGTCATAGTCGTAACTGA+CGG + chr5_3:69808800-69808819 Msa0827920:CDS 40.0%
TTCTTAGGGAATGGGAATAC+CGG + chr5_3:69808962-69808981 Msa0827920:intron 40.0%
CAACGTCAATAGTAATAGGC+AGG - chr5_3:69809198-69809217 None:intergenic 40.0%
CTGCCTATTACTATTGACGT+TGG + chr5_3:69809196-69809215 Msa0827920:CDS 40.0%
GTCCCAACGTCAATAGTAAT+AGG - chr5_3:69809202-69809221 None:intergenic 40.0%
TAAAGCAAAGACGAGCAACT+GGG + chr5_3:69809263-69809282 Msa0827920:CDS 40.0%
ACTGCAGTCAAGCAAACTTA+CGG + chr5_3:69809319-69809338 Msa0827920:CDS 40.0%
GGAAGAAGTTGAGGGTAGTT+TGG + chr5_3:69806568-69806587 Msa0827920:five_prime_UTR 45.0%
TAGTTTGGTAAGACCGAGGA+TGG + chr5_3:69806583-69806602 Msa0827920:exon 45.0%
AGTTTGGTAAGACCGAGGAT+GGG + chr5_3:69806584-69806603 Msa0827920:exon 45.0%
TGAACACCATTTCCCATCCT+CGG - chr5_3:69806599-69806618 None:intergenic 45.0%
TGGGAAATGGTGTTCAATCC+TGG + chr5_3:69806603-69806622 Msa0827920:CDS 45.0%
GAGAGAGAAAGAGAGATCAG+AGG - chr5_3:69806729-69806748 None:intergenic 45.0%
!! GGAGATCATGATGATGGGTA+TGG - chr5_3:69806929-69806948 None:intergenic 45.0%
GTTGCGGAGATCATGATGAT+GGG - chr5_3:69806934-69806953 None:intergenic 45.0%
!! ACATCTGTGGTGGACAAAGA+AGG + chr5_3:69807344-69807363 Msa0827920:CDS 45.0%
!! CATCTGTGGTGGACAAAGAA+GGG + chr5_3:69807345-69807364 Msa0827920:CDS 45.0%
!! ATCTGTGGTGGACAAAGAAG+GGG + chr5_3:69807346-69807365 Msa0827920:CDS 45.0%
AAAGAAGGGGTTATGGACCT+TGG + chr5_3:69807359-69807378 Msa0827920:CDS 45.0%
AATTAAAAAGGAGGCCGTGG+TGG + chr5_3:69807456-69807475 Msa0827920:CDS 45.0%
GATGATAATCCGATCTCTGG+TGG + chr5_3:69807487-69807506 Msa0827920:CDS 45.0%
TGATGTTTACGGCGAGGATA+AGG + chr5_3:69807519-69807538 Msa0827920:CDS 45.0%
AGTCACAAAGTGATCCTCAG+TGG - chr5_3:69807545-69807564 None:intergenic 45.0%
AGGATCACTTTGTGACTCCT+TGG + chr5_3:69807548-69807567 Msa0827920:CDS 45.0%
CTAGCAACAGAAACACTCCA+AGG - chr5_3:69807568-69807587 None:intergenic 45.0%
! CTTGGAGTGTTTCTGTTGCT+AGG + chr5_3:69807566-69807585 Msa0827920:CDS 45.0%
CGAGATCCACACTTCAACAA+AGG + chr5_3:69808077-69808096 Msa0827920:CDS 45.0%
TCCACACTTCAACAAAGGGT+TGG + chr5_3:69808082-69808101 Msa0827920:CDS 45.0%
TTCCTCAAGAAACTCAGGTG+AGG + chr5_3:69808165-69808184 Msa0827920:CDS 45.0%
TTCCTCACCTGAGTTTCTTG+AGG - chr5_3:69808170-69808189 None:intergenic 45.0%
CTTGATATTGGCGTATGTGC+TGG - chr5_3:69808199-69808218 None:intergenic 45.0%
TCTGCAGCGGAACTTGATAT+TGG - chr5_3:69808211-69808230 None:intergenic 45.0%
ATTGCCATGTATCTCTGCAG+CGG - chr5_3:69808224-69808243 None:intergenic 45.0%
GCAGAGATACATGGCAATGA+TGG + chr5_3:69808226-69808245 Msa0827920:CDS 45.0%
!! CATGGCAATGATGGATCTTC+AGG + chr5_3:69808235-69808254 Msa0827920:CDS 45.0%
GTCAAAACTCCCACCTTCTT+TGG + chr5_3:69808300-69808319 Msa0827920:intron 45.0%
! GGACATTTTTATGCGTCCAC+AGG + chr5_3:69808573-69808592 Msa0827920:CDS 45.0%
TTCTACGAGGATAAACAGGC+GGG - chr5_3:69808639-69808658 None:intergenic 45.0%
TAGTCGTAACTGACGGAGAA+CGG + chr5_3:69808807-69808826 Msa0827920:CDS 45.0%
CTAAAGCAAAGACGAGCAAC+TGG + chr5_3:69809262-69809281 Msa0827920:CDS 45.0%
!!! TTGTTTAATTTAATTTAATA+AGG + chr5_3:69807794-69807813 Msa0827920:intron 5.0%
!!! TGTTTAATTTAATTTAATAA+GGG + chr5_3:69807795-69807814 Msa0827920:intron 5.0%
AGGGTAGTTTGGTAAGACCG+AGG + chr5_3:69806579-69806598 Msa0827920:five_prime_UTR 50.0%
GTAAGACCGAGGATGGGAAA+TGG + chr5_3:69806590-69806609 Msa0827920:exon 50.0%
GGTTGCGGAGATCATGATGA+TGG - chr5_3:69806935-69806954 None:intergenic 50.0%
! GATTACCAGGAAGGTGCATC+TGG - chr5_3:69806956-69806975 None:intergenic 50.0%
TATTACGAGCAGGGTTGCTC+AGG + chr5_3:69807304-69807323 Msa0827920:intron 50.0%
AGGGTTGCTCAGGATTAGGT+GGG + chr5_3:69807314-69807333 Msa0827920:intron 50.0%
GGTGGACAAAGAAGGGGTTA+TGG + chr5_3:69807352-69807371 Msa0827920:CDS 50.0%
AAGGGGTTATGGACCTTGGA+GGG + chr5_3:69807363-69807382 Msa0827920:CDS 50.0%
GATAATCCGATCTCTGGTGG+CGG + chr5_3:69807490-69807509 Msa0827920:CDS 50.0%
GTCTATGCCATCCCCTCAAT+TGG + chr5_3:69807708-69807727 Msa0827920:intron 50.0%
AGGTACACCAATTGAGGGGA+TGG - chr5_3:69807718-69807737 None:intergenic 50.0%
GCCAACCCTTTGTTGAAGTG+TGG - chr5_3:69808086-69808105 None:intergenic 50.0%
AGTTCCGCTGCAGAGATACA+TGG + chr5_3:69808217-69808236 Msa0827920:CDS 50.0%
GTATACTCCAACTGTTGGCG+AGG + chr5_3:69808534-69808553 Msa0827920:CDS 50.0%
AACTGACGGAGAACGGATCT+TGG + chr5_3:69808814-69808833 Msa0827920:CDS 50.0%
ACTGACGGAGAACGGATCTT+GGG + chr5_3:69808815-69808834 Msa0827920:CDS 50.0%
GAGAACGGATCTTGGGTCTT+GGG + chr5_3:69808822-69808841 Msa0827920:CDS 50.0%
AGAACGGATCTTGGGTCTTG+GGG + chr5_3:69808823-69808842 Msa0827920:CDS 50.0%
ATCTTGGGTCTTGGGGATCT+AGG + chr5_3:69808830-69808849 Msa0827920:CDS 50.0%
TCTTGGGGATCTAGGTTGTC+AGG + chr5_3:69808838-69808857 Msa0827920:CDS 50.0%
TTAGGGAATGGGAATACCGG+TGG + chr5_3:69808965-69808984 Msa0827920:intron 50.0%
TAGGGAATGGGAATACCGGT+GGG + chr5_3:69808966-69808985 Msa0827920:intron 50.0%
ACGTTGGGACAAACAACGAG+AGG + chr5_3:69809212-69809231 Msa0827920:CDS 50.0%
AGATTACAGTCCGGTAAGCC+AGG - chr5_3:69809397-69809416 None:intergenic 50.0%
! CAGGAAGGTGCATCTGGTTG+CGG - chr5_3:69806950-69806969 None:intergenic 55.0%
GAGCAGGGTTGCTCAGGATT+AGG + chr5_3:69807310-69807329 Msa0827920:intron 55.0%
CAGGGTTGCTCAGGATTAGG+TGG + chr5_3:69807313-69807332 Msa0827920:intron 55.0%
TGCTCAGGATTAGGTGGGAG+TGG + chr5_3:69807319-69807338 Msa0827920:CDS 55.0%
GGTGGGAGTGGTAACATCTG+TGG + chr5_3:69807331-69807350 Msa0827920:CDS 55.0%
GGGAGTGGTAACATCTGTGG+TGG + chr5_3:69807334-69807353 Msa0827920:CDS 55.0%
GAAGGGGTTATGGACCTTGG+AGG + chr5_3:69807362-69807381 Msa0827920:CDS 55.0%
GACATACACGTCACCCTCCA+AGG - chr5_3:69807379-69807398 None:intergenic 55.0%
GGCGGTCCTCGTGATGTTTA+CGG + chr5_3:69807508-69807527 Msa0827920:CDS 55.0%
TCCTCGTGATGTTTACGGCG+AGG + chr5_3:69807513-69807532 Msa0827920:CDS 55.0%
TCCTCGCCGTAAACATCACG+AGG - chr5_3:69807517-69807536 None:intergenic 55.0%
AGGGATGCACACTACTTGCG+TGG + chr5_3:69808122-69808141 Msa0827920:CDS 55.0%
GGCGAGGCTTGCCAGAAATA+CGG + chr5_3:69808550-69808569 Msa0827920:CDS 55.0%
GCGAGGCTTGCCAGAAATAC+GGG + chr5_3:69808551-69808570 Msa0827920:CDS 55.0%
CGAGGCTTGCCAGAAATACG+GGG + chr5_3:69808552-69808571 Msa0827920:CDS 55.0%
GGAGAACGGATCTTGGGTCT+TGG + chr5_3:69808821-69808840 Msa0827920:CDS 55.0%
CGCAACCAGATGCACCTTCC+TGG + chr5_3:69806948-69806967 Msa0827920:CDS 60.0%
TGGCAAGCCTCGCCAACAGT+TGG - chr5_3:69808544-69808563 None:intergenic 60.0%
GCAAAGACGAGCAACTGGGC+AGG + chr5_3:69809267-69809286 Msa0827920:CDS 60.0%
CGAGGACCGCCACCAGAGAT+CGG - chr5_3:69807499-69807518 None:intergenic 65.0%
CGGCGAGGATAAGGCCACTG+AGG + chr5_3:69807528-69807547 Msa0827920:CDS 65.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 69806568 69809423 69806568 ID=Msa0827920;Name=Msa0827920
chr5_3 mRNA 69806568 69809423 69806568 ID=Msa0827920-mRNA-1;Parent=Msa0827920;Name=Msa0827920-mRNA-1;_AED=0.14;_eAED=0.14;_QI=34|1|0.87|1|1|1|8|0|384
chr5_3 exon 69806568 69806664 69806568 ID=Msa0827920-mRNA-1:exon:21916;Parent=Msa0827920-mRNA-1
chr5_3 exon 69806901 69806969 69806901 ID=Msa0827920-mRNA-1:exon:21917;Parent=Msa0827920-mRNA-1
chr5_3 exon 69807316 69807587 69807316 ID=Msa0827920-mRNA-1:exon:21918;Parent=Msa0827920-mRNA-1
chr5_3 exon 69808061 69808256 69808061 ID=Msa0827920-mRNA-1:exon:21919;Parent=Msa0827920-mRNA-1
chr5_3 exon 69808469 69808620 69808469 ID=Msa0827920-mRNA-1:exon:21920;Parent=Msa0827920-mRNA-1
chr5_3 exon 69808754 69808859 69808754 ID=Msa0827920-mRNA-1:exon:21921;Parent=Msa0827920-mRNA-1
chr5_3 exon 69808969 69809034 69808969 ID=Msa0827920-mRNA-1:exon:21922;Parent=Msa0827920-mRNA-1
chr5_3 exon 69809193 69809423 69809193 ID=Msa0827920-mRNA-1:exon:21923;Parent=Msa0827920-mRNA-1
chr5_3 five_prime_UTR 69806568 69806601 69806568 ID=Msa0827920-mRNA-1:five_prime_utr;Parent=Msa0827920-mRNA-1
chr5_3 CDS 69806602 69806664 69806602 ID=Msa0827920-mRNA-1:cds;Parent=Msa0827920-mRNA-1
chr5_3 CDS 69806901 69806969 69806901 ID=Msa0827920-mRNA-1:cds;Parent=Msa0827920-mRNA-1
chr5_3 CDS 69807316 69807587 69807316 ID=Msa0827920-mRNA-1:cds;Parent=Msa0827920-mRNA-1
chr5_3 CDS 69808061 69808256 69808061 ID=Msa0827920-mRNA-1:cds;Parent=Msa0827920-mRNA-1
chr5_3 CDS 69808469 69808620 69808469 ID=Msa0827920-mRNA-1:cds;Parent=Msa0827920-mRNA-1
chr5_3 CDS 69808754 69808859 69808754 ID=Msa0827920-mRNA-1:cds;Parent=Msa0827920-mRNA-1
chr5_3 CDS 69808969 69809034 69808969 ID=Msa0827920-mRNA-1:cds;Parent=Msa0827920-mRNA-1
chr5_3 CDS 69809193 69809423 69809193 ID=Msa0827920-mRNA-1:cds;Parent=Msa0827920-mRNA-1
Gene Sequence

>Msa0827920

ATGGGAAATGGTGTTCAATCCTGGCACTTGTTGAAACAAGTTGCGAGTTCCAACCTTTTTAAGCAAAGCAGGACTCTTTCTCGCACTTCCATACCCATCATCATGATCTCCGCAACCAGATGCACCTTCCTGGGTTGCTCAGGATTAGGTGGGAGTGGTAACATCTGTGGTGGACAAAGAAGGGGTTATGGACCTTGGAGGGTGACGTGTATGTCACCAATCAATGATAGAAATGGCAGTGTTGTTAATGTGATGGAGACACCTTTGAAAGAAATTAAAAAGGAGGCCGTGGTGGAAGATGTAGATGATAATCCGATCTCTGGTGGCGGTCCTCGTGATGTTTACGGCGAGGATAAGGCCACTGAGGATCACTTTGTGACTCCTTGGAGTGTTTCTGTTGCTAGTGGTTATACATTGTTGCGAGATCCACACTTCAACAAAGGGTTGGCCTTTACTGAAAAAGAGAGGGATGCACACTACTTGCGTGGTCTTCTTCCCCCAACAACTATTCCTCAAGAAACTCAGGTGAGGAAAATGATCCAGCACATACGCCAATATCAAGTTCCGCTGCAGAGATACATGGCAATGATGGATCTTCAGGAAAGAAATGAACGTCTGTTTTACAAACTTCTCATTGATCACGTTGAAGAATTGCTCCCAATCGTGTATACTCCAACTGTTGGCGAGGCTTGCCAGAAATACGGGGACATTTTTATGCGTCCACAGGGTCTTTATATAAGTTTGAAAGAGAAGGGGAGGATTCAAGAAGTACTGAGAAATTGGCCTGAGAAGAACATTCAAGTCATAGTCGTAACTGACGGAGAACGGATCTTGGGTCTTGGGGATCTAGGTTGTCAGGGAATGGGAATACCGGTGGGAAAACTTTCTTTATATACTGCACTAGGAGGAGTTCGTCCTTCAGCTTGCCTGCCTATTACTATTGACGTTGGGACAAACAACGAGAGGCTGCTCAATGATGAATTATATATCGGGCTAAAGCAAAGACGAGCAACTGGGCAGGAATATTCTGAACTTATGCACGAATTTATGACTGCAGTCAAGCAAACTTACGGTGAAAAAGTCTTAATTCAGGTATCAATCGGTATCAAAAGGCACAATTTATTTCCTGGCTTACCGGACTGTAATCTGTACTAA

Protein sequence

>Msa0827920

MGNGVQSWHLLKQVASSNLFKQSRTLSRTSIPIIMISATRCTFLGCSGLGGSGNICGGQRRGYGPWRVTCMSPINDRNGSVVNVMETPLKEIKKEAVVEDVDDNPISGGGPRDVYGEDKATEDHFVTPWSVSVASGYTLLRDPHFNKGLAFTEKERDAHYLRGLLPPTTIPQETQVRKMIQHIRQYQVPLQRYMAMMDLQERNERLFYKLLIDHVEELLPIVYTPTVGEACQKYGDIFMRPQGLYISLKEKGRIQEVLRNWPEKNIQVIVVTDGERILGLGDLGCQGMGIPVGKLSLYTALGGVRPSACLPITIDVGTNNERLLNDELYIGLKQRRATGQEYSELMHEFMTAVKQTYGEKVLIQVSIGIKRHNLFPGLPDCNLY*