AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0303890

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0303890 MtrunA17_Chr2g0331051 100.000 307 0 0 1 307 335 641 0.0 627
Msa0303890 MtrunA17_Chr8g0340671 80.000 335 39 1 1 307 282 616 0.0 534
Msa0303890 MtrunA17_Chr3g0140501 83.388 307 51 0 1 307 272 578 0.0 521
Msa0303890 MtrunA17_Chr8g0389961 79.153 307 64 0 1 307 285 591 8.35e-176 499
Msa0303890 MtrunA17_Chr8g0337031 40.604 298 150 8 5 281 297 588 1.84e-58 197
Msa0303890 MtrunA17_Chr7g0247001 35.938 320 183 6 5 303 276 594 7.42e-58 196
Msa0303890 MtrunA17_Chr8g0349861 35.938 320 183 7 5 303 279 597 2.00e-56 192
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0303890 AT1G79750.1 82.736 307 53 0 1 307 340 646 0.0 525
Msa0303890 AT5G25880.1 79.153 307 64 0 1 307 282 588 0.0 513
Msa0303890 AT2G19900.2 77.524 307 69 0 1 307 176 482 5.61e-171 483
Msa0303890 AT5G11670.1 77.850 307 68 0 1 307 282 588 2.17e-170 485
Msa0303890 AT2G19900.1 77.524 307 69 0 1 307 275 581 2.03e-169 483
Msa0303890 AT5G25880.2 79.928 279 56 0 1 279 282 560 5.38e-163 466
Msa0303890 AT5G25880.3 80.000 180 36 0 1 180 282 461 8.40e-100 303
Msa0303890 AT2G13560.1 39.077 325 171 8 5 303 292 615 6.39e-63 210
Msa0303890 AT4G00570.1 38.365 318 175 7 5 303 285 600 6.10e-60 201

Find 105 sgRNAs with CRISPR-Local

Find 348 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTATATTCAACCGGCGAAAA+TGG 0.198852 2_3:+61107696 None:intergenic
ATTAAGCCAACAGTGCTTAT+TGG 0.199640 2_3:-61108072 Msa0303890:CDS
ACGAAGTGCGCAAGAATATT+TGG 0.247961 2_3:-61108303 Msa0303890:CDS
GGTGGGTTAGTAAGGAAATT+AGG 0.273545 2_3:-61106765 Msa0303890:three_prime_UTR
ACGGCATCGGTTGTTCTTGC+TGG 0.299277 2_3:-61108687 Msa0303890:CDS
ACTAGTTGCAGCTTTGAAAT+TGG 0.312159 2_3:-61108664 Msa0303890:CDS
TTCGAAAGAGAGAGAATAAT+AGG 0.315133 2_3:+61107883 None:intergenic
CACCGGTAGCTTCTGTAGGC+TGG 0.319833 2_3:+61106912 None:intergenic
CCTTCCACAGCCGAAAGATT+TGG 0.330794 2_3:-61106964 Msa0303890:CDS
TTTACAAGTCATAATTGTAT+TGG 0.330980 2_3:-61106787 Msa0303890:three_prime_UTR
TTACAAGTCATAATTGTATT+GGG 0.337018 2_3:-61106786 Msa0303890:three_prime_UTR
ATATTCCCTGGTTTCGGCCT+AGG 0.341563 2_3:-61107551 Msa0303890:CDS
GGCCTAGGTTTAATAATGTC+TGG 0.353628 2_3:-61107536 Msa0303890:CDS
CATCGCCTCAACCACCTCTT+TGG 0.369878 2_3:+61108023 None:intergenic
TTGTATTGGGTGGGTTAGTA+AGG 0.371068 2_3:-61106773 Msa0303890:three_prime_UTR
GCATACATATTCCCTGGTTT+CGG 0.381227 2_3:-61107557 Msa0303890:CDS
TGCACTTGAAACATCTAAAC+AGG 0.390476 2_3:-61108433 Msa0303890:intron
TTGCAGCTTTGAAATTGGTT+GGG 0.391250 2_3:-61108659 Msa0303890:CDS
GACCACAAATTCTTATTCCT+TGG 0.393449 2_3:-61108624 Msa0303890:CDS
TGGTGGTTGCAGGCGGGCAC+TGG 0.394769 2_3:-61108471 Msa0303890:intron
AATGTTGGAGTGATTCTTTA+CGG 0.399579 2_3:+61108248 None:intergenic
GCAAACTTCACCAAATCTTT+CGG 0.406965 2_3:+61106954 None:intergenic
ACGGTATTCAAATTTAGAAA+TGG 0.412514 2_3:-61106668 Msa0303890:three_prime_UTR
TCTTGCGCACTTCGTCCAAT+GGG 0.414035 2_3:+61108311 None:intergenic
ATGTTGGAGTGATTCTTTAC+GGG 0.416918 2_3:+61108249 None:intergenic
AGCTTCTTCAGCGGTACATT+CGG 0.417313 2_3:+61107846 None:intergenic
ACTTTCCCCTTATATTCAAC+CGG 0.431090 2_3:+61107687 None:intergenic
TAGTGGTAGTTGGACTACTA+AGG 0.438046 2_3:-61106736 Msa0303890:three_prime_UTR
ACCGGTAGCTTCTGTAGGCT+GGG 0.438513 2_3:+61106913 None:intergenic
TACATTCGGACTGTGATGTT+GGG 0.447948 2_3:+61107860 None:intergenic
TTCTTGCGCACTTCGTCCAA+TGG 0.448381 2_3:+61108310 None:intergenic
GAAAGTGTTTGTGCCTGGCC+AGG 0.451079 2_3:-61107670 Msa0303890:intron
ATAAGCTTTAGCAGCAACTT+TGG 0.454475 2_3:+61107269 None:intergenic
TAGGAAGGTGTAGTGGTAGT+TGG 0.462789 2_3:-61106746 Msa0303890:three_prime_UTR
TATATTCAACCGGCGAAAAT+GGG 0.463892 2_3:+61107697 None:intergenic
AAAATATAGATCAACACATC+TGG 0.469282 2_3:-61108829 Msa0303890:CDS
CCCACGGCTTCTTGAAATGT+TGG 0.470716 2_3:+61108233 None:intergenic
GTTGCAGCTTTGAAATTGGT+TGG 0.474733 2_3:-61108660 Msa0303890:CDS
AGCTGAAATCTTTCTGATGT+TGG 0.479781 2_3:+61107302 None:intergenic
TGCAGCTTTGAAATTGGTTG+GGG 0.485824 2_3:-61108658 Msa0303890:CDS
TTCACCAAATCTTTCGGCTG+TGG 0.487173 2_3:+61106960 None:intergenic
CAAAGAGGTGGTTGAGGCGA+TGG 0.487602 2_3:-61108022 Msa0303890:CDS
GTACATTCGGACTGTGATGT+TGG 0.495071 2_3:+61107859 None:intergenic
ATCTTTCTGATGTTGGTGAA+TGG 0.499491 2_3:+61107309 None:intergenic
TCTTGGGCTTAGACCTGGCC+AGG 0.502152 2_3:+61107657 None:intergenic
ACTAAGTACCTCGTTAATAG+AGG 0.503924 2_3:+61107999 None:intergenic
TATTTGGTTGGTGGACTCAA+AGG 0.506374 2_3:-61108287 Msa0303890:CDS
AATAATGCATACATATTCCC+TGG 0.508008 2_3:-61107563 Msa0303890:CDS
GCCTAGGTTTAATAATGTCT+GGG 0.511042 2_3:-61107535 Msa0303890:CDS
ATTTGGTTGGTGGACTCAAA+GGG 0.512793 2_3:-61108286 Msa0303890:CDS
TTTGTTCCAGGGAACGGCAT+CGG 0.514994 2_3:-61108700 Msa0303890:intron
ACAGTGCTTATTGGAACATC+GGG 0.517722 2_3:-61108063 Msa0303890:CDS
GCGCAAGAATATTTGGTTGG+TGG 0.519227 2_3:-61108296 Msa0303890:CDS
AAGTCATAATTGTATTGGGT+GGG 0.523261 2_3:-61106782 Msa0303890:three_prime_UTR
CACCAAGGAATAAGAATTTG+TGG 0.527209 2_3:+61108622 None:intergenic
AAATTCTTATTCCTTGGTGC+CGG 0.527719 2_3:-61108618 Msa0303890:CDS
ACTTACAGGCAGCAAGAAGC+AGG 0.528795 2_3:+61107492 None:intergenic
AAGGGGAAAGTGTTTGTGCC+TGG 0.536779 2_3:-61107675 Msa0303890:CDS
CCAAATCTTTCGGCTGTGGA+AGG 0.537409 2_3:+61106964 None:intergenic
GCTGCTAAAGCTTATGAACT+TGG 0.538654 2_3:-61107261 Msa0303890:intron
ATCAGAAGAGAACTTTGAGA+AGG 0.539232 2_3:-61107346 Msa0303890:CDS
TTATTGTCTCGTTGTATCAC+CGG 0.541338 2_3:+61106895 None:intergenic
TTCTGATGTTGGTGAATGGT+GGG 0.541430 2_3:+61107313 None:intergenic
GAATGGAACAGCTGAGGCAT+TGG 0.543029 2_3:-61107379 Msa0303890:intron
GATGCAGACAAATGCCCCAT+TGG 0.548923 2_3:-61108326 Msa0303890:intron
CAAGTCATAATTGTATTGGG+TGG 0.549761 2_3:-61106783 Msa0303890:three_prime_UTR
TCAGAAGAGAACTTTGAGAA+GGG 0.550927 2_3:-61107345 Msa0303890:CDS
ATTAAACCTAGGCCGAAACC+AGG 0.561358 2_3:+61107545 None:intergenic
TCCAACATTTCAAGAAGCCG+TGG 0.562460 2_3:-61108234 Msa0303890:CDS
GTATCACCGGTAGCTTCTGT+AGG 0.562772 2_3:+61106908 None:intergenic
GATGTTCCAATAAGCACTGT+TGG 0.567606 2_3:+61108066 None:intergenic
CAAGCAGATCAAAAGCATTG+TGG 0.567935 2_3:+61108853 None:intergenic
AGGAAATTAGGAAGGTGTAG+TGG 0.573108 2_3:-61106753 Msa0303890:three_prime_UTR
AACAGTGCTTATTGGAACAT+CGG 0.574999 2_3:-61108064 Msa0303890:CDS
TTTCGCCGGTTGAATATAAG+GGG 0.577166 2_3:-61107692 Msa0303890:CDS
TTTCTGATGTTGGTGAATGG+TGG 0.584930 2_3:+61107312 None:intergenic
CTTATTGGAACATCGGGACA+AGG 0.586028 2_3:-61108057 Msa0303890:CDS
GGTTAGTAAGGAAATTAGGA+AGG 0.589372 2_3:-61106761 Msa0303890:three_prime_UTR
CTTATTCCTTGGTGCCGGCG+AGG 0.593339 2_3:-61108613 Msa0303890:intron
AGTGCGCAAGAATATTTGGT+TGG 0.599784 2_3:-61108299 Msa0303890:CDS
CCGGTAGCTTCTGTAGGCTG+GGG 0.599908 2_3:+61106914 None:intergenic
GACATACCTCGCCGGCACCA+AGG 0.605182 2_3:+61108607 None:intergenic
GTTTACCAAAGAGGTGGTTG+AGG 0.606667 2_3:-61108028 Msa0303890:CDS
GGTTCGTGTTCATGAGCCCA+CGG 0.614980 2_3:+61108217 None:intergenic
TGGGGTATACATACAGCTCT+CGG 0.615153 2_3:+61106932 None:intergenic
AGGAAGTGCGTTTACCAAAG+AGG 0.621719 2_3:-61108037 Msa0303890:CDS
CCCCAGCCTACAGAAGCTAC+CGG 0.627715 2_3:-61106914 Msa0303890:CDS
GTACATTAACAGCATCGAGA+AGG 0.628699 2_3:+61108185 None:intergenic
TTTCGGCTGTGGAAGGCGAG+TGG 0.629320 2_3:+61106971 None:intergenic
GGACGTGCGATCTTTGCAAG+TGG 0.629712 2_3:-61107723 Msa0303890:CDS
AGTGGTAGTTGGACTACTAA+GGG 0.634455 2_3:-61106735 Msa0303890:three_prime_UTR
GACGTGCGATCTTTGCAAGT+GGG 0.636596 2_3:-61107722 Msa0303890:CDS
AAAAGAAGATAAGAAAATGG+GGG 0.642535 2_3:+61106870 None:intergenic
AGGAATAAGACATACCTCGC+CGG 0.646107 2_3:+61108599 None:intergenic
CAGGTCGTCATGTACACGAA+TGG 0.648656 2_3:+61107511 None:intergenic
CTTGCGCACTTCGTCCAATG+GGG 0.656636 2_3:+61108312 None:intergenic
AAGTGCGTTTACCAAAGAGG+TGG 0.663594 2_3:-61108034 Msa0303890:CDS
CCAACATTTCAAGAAGCCGT+GGG 0.668065 2_3:-61108233 Msa0303890:CDS
TTAAACCTAGGCCGAAACCA+GGG 0.671079 2_3:+61107546 None:intergenic
AGAAGCTTATACGTGGACCC+AGG 0.672069 2_3:-61107830 Msa0303890:intron
CCGCTGAAGAAGCTTATACG+TGG 0.683051 2_3:-61107837 Msa0303890:CDS
GCAGCTTTGAAATTGGTTGG+GGG 0.689153 2_3:-61108657 Msa0303890:CDS
CCACGTATAAGCTTCTTCAG+CGG 0.718316 2_3:+61107837 None:intergenic
GGCGATGGCCTCTATTAACG+AGG 0.722025 2_3:-61108007 Msa0303890:intron
TCCCAGACATTATTAAACCT+AGG 0.725512 2_3:+61107534 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CAAAAAAAATAAAAAATCTT+GGG + chr2_3:61107856-61107875 None:intergenic 10.0%
!! CAAAAAAAATAAAAAATCTT+GGG + chr2_3:61107856-61107875 None:intergenic 10.0%
!! CCAAAAAAAATAAAAAATCT+TGG + chr2_3:61107857-61107876 None:intergenic 15.0%
!!! CCAAGATTTTTTATTTTTTT+TGG - chr2_3:61107854-61107873 Msa0303890:CDS 15.0%
!! AAATTGATGTAAATGTAATA+AGG - chr2_3:61108055-61108074 Msa0303890:CDS 15.0%
!! AACAAAAGATAAAATAAAGT+CGG - chr2_3:61108431-61108450 Msa0303890:intron 15.0%
!! AAAAAAGAAGATAAGAAAAT+GGG + chr2_3:61108629-61108648 None:intergenic 15.0%
!!! TTTTCTTGAAATAATTTTAC+TGG - chr2_3:61108645-61108664 Msa0303890:CDS 15.0%
!! CCAAAAAAAATAAAAAATCT+TGG + chr2_3:61107857-61107876 None:intergenic 15.0%
!!! CCAAGATTTTTTATTTTTTT+TGG - chr2_3:61107854-61107873 Msa0303890:CDS 15.0%
!! AAATTGATGTAAATGTAATA+AGG - chr2_3:61108055-61108074 Msa0303890:CDS 15.0%
!! AACAAAAGATAAAATAAAGT+CGG - chr2_3:61108431-61108450 Msa0303890:intron 15.0%
!! AAAAAAGAAGATAAGAAAAT+GGG + chr2_3:61108629-61108648 None:intergenic 15.0%
!!! TTTTCTTGAAATAATTTTAC+TGG - chr2_3:61108645-61108664 Msa0303890:CDS 15.0%
!!! ATGTAGGTTTTTTAAAATCT+TGG - chr2_3:61106944-61106963 Msa0303890:CDS 20.0%
!!! TAGTATTTTCATGTCAAATA+AGG - chr2_3:61107879-61107898 Msa0303890:CDS 20.0%
!! CTTTAATCTTTCTTATTGAA+TGG - chr2_3:61108098-61108117 Msa0303890:intron 20.0%
!! AAAAAGAAGATAAGAAAATG+GGG + chr2_3:61108628-61108647 None:intergenic 20.0%
!! GAAAAAAGAAGATAAGAAAA+TGG + chr2_3:61108630-61108649 None:intergenic 20.0%
!! TTTACAAGTCATAATTGTAT+TGG - chr2_3:61108707-61108726 Msa0303890:intron 20.0%
!! TTACAAGTCATAATTGTATT+GGG - chr2_3:61108708-61108727 Msa0303890:intron 20.0%
!!! ATGTAGGTTTTTTAAAATCT+TGG - chr2_3:61106944-61106963 Msa0303890:CDS 20.0%
!!! TAGTATTTTCATGTCAAATA+AGG - chr2_3:61107879-61107898 Msa0303890:CDS 20.0%
!! CTTTAATCTTTCTTATTGAA+TGG - chr2_3:61108098-61108117 Msa0303890:intron 20.0%
!! AAAAAGAAGATAAGAAAATG+GGG + chr2_3:61108628-61108647 None:intergenic 20.0%
!! GAAAAAAGAAGATAAGAAAA+TGG + chr2_3:61108630-61108649 None:intergenic 20.0%
!! TTTACAAGTCATAATTGTAT+TGG - chr2_3:61108707-61108726 Msa0303890:intron 20.0%
!! TTACAAGTCATAATTGTATT+GGG - chr2_3:61108708-61108727 Msa0303890:intron 20.0%
! AAAATATAGATCAACACATC+TGG - chr2_3:61106665-61106684 Msa0303890:three_prime_UTR 25.0%
!!! TTTTGAAACTTGTTAGATGT+AGG - chr2_3:61106928-61106947 Msa0303890:CDS 25.0%
!! TTAATGTACGGTCAATTTTT+CGG - chr2_3:61107323-61107342 Msa0303890:CDS 25.0%
!! CATATACACAACATAAGTTT+TGG - chr2_3:61107367-61107386 Msa0303890:CDS 25.0%
!! TTGAAATTTGAGCGTATTTT+TGG - chr2_3:61107714-61107733 Msa0303890:CDS 25.0%
!!! TATTCTGTTTCATTTTTCTC+AGG - chr2_3:61107749-61107768 Msa0303890:intron 25.0%
!!! ATTCTGTTTCATTTTTCTCA+GGG - chr2_3:61107750-61107769 Msa0303890:intron 25.0%
! ATGTCAAATAAGGTCTAATT+TGG - chr2_3:61107889-61107908 Msa0303890:CDS 25.0%
! GATGTAAATGTAATAAGGTA+TGG - chr2_3:61108060-61108079 Msa0303890:CDS 25.0%
! AAAAGAAGATAAGAAAATGG+GGG + chr2_3:61108627-61108646 None:intergenic 25.0%
!! ATATTATTTTCTCTGTGTGA+CGG - chr2_3:61108807-61108826 Msa0303890:intron 25.0%
! ACGGTATTCAAATTTAGAAA+TGG - chr2_3:61108826-61108845 Msa0303890:CDS 25.0%
! AAAATATAGATCAACACATC+TGG - chr2_3:61106665-61106684 Msa0303890:three_prime_UTR 25.0%
!!! TTTTGAAACTTGTTAGATGT+AGG - chr2_3:61106928-61106947 Msa0303890:CDS 25.0%
!! TTAATGTACGGTCAATTTTT+CGG - chr2_3:61107323-61107342 Msa0303890:CDS 25.0%
!! CATATACACAACATAAGTTT+TGG - chr2_3:61107367-61107386 Msa0303890:CDS 25.0%
!! TTGAAATTTGAGCGTATTTT+TGG - chr2_3:61107714-61107733 Msa0303890:CDS 25.0%
!!! TATTCTGTTTCATTTTTCTC+AGG - chr2_3:61107749-61107768 Msa0303890:intron 25.0%
!!! ATTCTGTTTCATTTTTCTCA+GGG - chr2_3:61107750-61107769 Msa0303890:intron 25.0%
! ATGTCAAATAAGGTCTAATT+TGG - chr2_3:61107889-61107908 Msa0303890:CDS 25.0%
! GATGTAAATGTAATAAGGTA+TGG - chr2_3:61108060-61108079 Msa0303890:CDS 25.0%
! AAAAGAAGATAAGAAAATGG+GGG + chr2_3:61108627-61108646 None:intergenic 25.0%
!! ATATTATTTTCTCTGTGTGA+CGG - chr2_3:61108807-61108826 Msa0303890:intron 25.0%
! ACGGTATTCAAATTTAGAAA+TGG - chr2_3:61108826-61108845 Msa0303890:CDS 25.0%
ACTTTATCTACTTTGTTCCA+GGG - chr2_3:61106783-61106802 Msa0303890:three_prime_UTR 30.0%
AGTTTCAAAATGCTATGTCA+AGG + chr2_3:61106918-61106937 None:intergenic 30.0%
TAAAATCTTGGAGTAACAAC+TGG - chr2_3:61106956-61106975 Msa0303890:CDS 30.0%
TTACATCCATTTACTCTTTG+TGG - chr2_3:61106985-61107004 Msa0303890:intron 30.0%
AATGTTGGAGTGATTCTTTA+CGG + chr2_3:61107249-61107268 None:intergenic 30.0%
TTGTGTATATGCATGTATCA+AGG + chr2_3:61107358-61107377 None:intergenic 30.0%
TTCGAAAGAGAGAGAATAAT+AGG + chr2_3:61107614-61107633 None:intergenic 30.0%
! CAAGTTAGTTTCTATTACCT+GGG + chr2_3:61107684-61107703 None:intergenic 30.0%
! ACAAGTTAGTTTCTATTACC+TGG + chr2_3:61107685-61107704 None:intergenic 30.0%
!! ATTTGGATGTTTTGTTCATC+AGG - chr2_3:61107906-61107925 Msa0303890:intron 30.0%
AATAATGCATACATATTCCC+TGG - chr2_3:61107931-61107950 Msa0303890:intron 30.0%
GTAATAAGGTATGGTTGAAA+TGG - chr2_3:61108069-61108088 Msa0303890:CDS 30.0%
! TACATGTTTTGCATCTTTGA+AGG - chr2_3:61108294-61108313 Msa0303890:CDS 30.0%
GTAAGTTGTTTATCCAAGTA+GGG + chr2_3:61108342-61108361 None:intergenic 30.0%
AGTAAGTTGTTTATCCAAGT+AGG + chr2_3:61108343-61108362 None:intergenic 30.0%
AAGTCATAATTGTATTGGGT+GGG - chr2_3:61108712-61108731 Msa0303890:intron 30.0%
ACTTTATCTACTTTGTTCCA+GGG - chr2_3:61106783-61106802 Msa0303890:three_prime_UTR 30.0%
AGTTTCAAAATGCTATGTCA+AGG + chr2_3:61106918-61106937 None:intergenic 30.0%
TAAAATCTTGGAGTAACAAC+TGG - chr2_3:61106956-61106975 Msa0303890:CDS 30.0%
TTACATCCATTTACTCTTTG+TGG - chr2_3:61106985-61107004 Msa0303890:intron 30.0%
AATGTTGGAGTGATTCTTTA+CGG + chr2_3:61107249-61107268 None:intergenic 30.0%
TTGTGTATATGCATGTATCA+AGG + chr2_3:61107358-61107377 None:intergenic 30.0%
TTCGAAAGAGAGAGAATAAT+AGG + chr2_3:61107614-61107633 None:intergenic 30.0%
! CAAGTTAGTTTCTATTACCT+GGG + chr2_3:61107684-61107703 None:intergenic 30.0%
! ACAAGTTAGTTTCTATTACC+TGG + chr2_3:61107685-61107704 None:intergenic 30.0%
!! ATTTGGATGTTTTGTTCATC+AGG - chr2_3:61107906-61107925 Msa0303890:intron 30.0%
AATAATGCATACATATTCCC+TGG - chr2_3:61107931-61107950 Msa0303890:intron 30.0%
GTAATAAGGTATGGTTGAAA+TGG - chr2_3:61108069-61108088 Msa0303890:CDS 30.0%
! TACATGTTTTGCATCTTTGA+AGG - chr2_3:61108294-61108313 Msa0303890:CDS 30.0%
GTAAGTTGTTTATCCAAGTA+GGG + chr2_3:61108342-61108361 None:intergenic 30.0%
AGTAAGTTGTTTATCCAAGT+AGG + chr2_3:61108343-61108362 None:intergenic 30.0%
AAGTCATAATTGTATTGGGT+GGG - chr2_3:61108712-61108731 Msa0303890:intron 30.0%
!! AAGTAGATAAAGTGTCGAGA+CGG + chr2_3:61106776-61106795 None:intergenic 35.0%
CACTTTATCTACTTTGTTCC+AGG - chr2_3:61106782-61106801 Msa0303890:three_prime_UTR 35.0%
!! ACTAGTTGCAGCTTTGAAAT+TGG - chr2_3:61106830-61106849 Msa0303890:three_prime_UTR 35.0%
!! TTGCAGCTTTGAAATTGGTT+GGG - chr2_3:61106835-61106854 Msa0303890:three_prime_UTR 35.0%
GACCACAAATTCTTATTCCT+TGG - chr2_3:61106870-61106889 Msa0303890:three_prime_UTR 35.0%
CACCAAGGAATAAGAATTTG+TGG + chr2_3:61106875-61106894 None:intergenic 35.0%
! AAATTCTTATTCCTTGGTGC+CGG - chr2_3:61106876-61106895 Msa0303890:three_prime_UTR 35.0%
CTTAAGCCACAAAGAGTAAA+TGG + chr2_3:61106994-61107013 None:intergenic 35.0%
TGTGGCTTAAGTGTATTGTT+TGG - chr2_3:61107003-61107022 Msa0303890:intron 35.0%
TGCACTTGAAACATCTAAAC+AGG - chr2_3:61107061-61107080 Msa0303890:intron 35.0%
CTTGAAACATCTAAACAGGT+TGG - chr2_3:61107065-61107084 Msa0303890:intron 35.0%
ATGTTGGAGTGATTCTTTAC+GGG + chr2_3:61107248-61107267 None:intergenic 35.0%
TTCTCGATGCTGTTAATGTA+CGG - chr2_3:61107311-61107330 Msa0303890:CDS 35.0%
ATTAAGCCAACAGTGCTTAT+TGG - chr2_3:61107422-61107441 Msa0303890:intron 35.0%
AACAGTGCTTATTGGAACAT+CGG - chr2_3:61107430-61107449 Msa0303890:intron 35.0%
ACTAAGTACCTCGTTAATAG+AGG + chr2_3:61107498-61107517 None:intergenic 35.0%
ATTCAGACATGAGATTGCAT+GGG + chr2_3:61107550-61107569 None:intergenic 35.0%
TATTCAGACATGAGATTGCA+TGG + chr2_3:61107551-61107570 None:intergenic 35.0%
TATATTCAACCGGCGAAAAT+GGG + chr2_3:61107800-61107819 None:intergenic 35.0%
TTATATTCAACCGGCGAAAA+TGG + chr2_3:61107801-61107820 None:intergenic 35.0%
!! ATTTTCGCCGGTTGAATATA+AGG - chr2_3:61107800-61107819 Msa0303890:intron 35.0%
!! TTTTCGCCGGTTGAATATAA+GGG - chr2_3:61107801-61107820 Msa0303890:intron 35.0%
ACTTTCCCCTTATATTCAAC+CGG + chr2_3:61107810-61107829 None:intergenic 35.0%
GCCTAGGTTTAATAATGTCT+GGG - chr2_3:61107959-61107978 Msa0303890:intron 35.0%
TCCCAGACATTATTAAACCT+AGG + chr2_3:61107963-61107982 None:intergenic 35.0%
CAAATCAGTTGTGAACTTAC+AGG + chr2_3:61108019-61108038 None:intergenic 35.0%
! ATCAGAAGAGAACTTTGAGA+AGG - chr2_3:61108148-61108167 Msa0303890:intron 35.0%
! TCAGAAGAGAACTTTGAGAA+GGG - chr2_3:61108149-61108168 Msa0303890:intron 35.0%
! ATCTTTCTGATGTTGGTGAA+TGG + chr2_3:61108188-61108207 None:intergenic 35.0%
AGCTGAAATCTTTCTGATGT+TGG + chr2_3:61108195-61108214 None:intergenic 35.0%
! ATAAGCTTTAGCAGCAACTT+TGG + chr2_3:61108228-61108247 None:intergenic 35.0%
CAAAGATGCAAAACATGTAC+TGG + chr2_3:61108293-61108312 None:intergenic 35.0%
!!! TTGCATCTTTGAAGGCATTT+TGG - chr2_3:61108302-61108321 Msa0303890:CDS 35.0%
TACTTAAGCGCTTATAGCAT+AGG - chr2_3:61108359-61108378 Msa0303890:intron 35.0%
! TTCTTGTTTGCATTTCTGTC+AGG - chr2_3:61108495-61108514 Msa0303890:intron 35.0%
GCAAACTTCACCAAATCTTT+CGG + chr2_3:61108543-61108562 None:intergenic 35.0%
TTATTGTCTCGTTGTATCAC+CGG + chr2_3:61108602-61108621 None:intergenic 35.0%
CAAGTCATAATTGTATTGGG+TGG - chr2_3:61108711-61108730 Msa0303890:intron 35.0%
GGTTAGTAAGGAAATTAGGA+AGG - chr2_3:61108733-61108752 Msa0303890:intron 35.0%
!! AAGTAGATAAAGTGTCGAGA+CGG + chr2_3:61106776-61106795 None:intergenic 35.0%
CACTTTATCTACTTTGTTCC+AGG - chr2_3:61106782-61106801 Msa0303890:three_prime_UTR 35.0%
!! ACTAGTTGCAGCTTTGAAAT+TGG - chr2_3:61106830-61106849 Msa0303890:three_prime_UTR 35.0%
!! TTGCAGCTTTGAAATTGGTT+GGG - chr2_3:61106835-61106854 Msa0303890:three_prime_UTR 35.0%
GACCACAAATTCTTATTCCT+TGG - chr2_3:61106870-61106889 Msa0303890:three_prime_UTR 35.0%
CACCAAGGAATAAGAATTTG+TGG + chr2_3:61106875-61106894 None:intergenic 35.0%
! AAATTCTTATTCCTTGGTGC+CGG - chr2_3:61106876-61106895 Msa0303890:three_prime_UTR 35.0%
CTTAAGCCACAAAGAGTAAA+TGG + chr2_3:61106994-61107013 None:intergenic 35.0%
TGTGGCTTAAGTGTATTGTT+TGG - chr2_3:61107003-61107022 Msa0303890:intron 35.0%
TGCACTTGAAACATCTAAAC+AGG - chr2_3:61107061-61107080 Msa0303890:intron 35.0%
CTTGAAACATCTAAACAGGT+TGG - chr2_3:61107065-61107084 Msa0303890:intron 35.0%
ATGTTGGAGTGATTCTTTAC+GGG + chr2_3:61107248-61107267 None:intergenic 35.0%
TTCTCGATGCTGTTAATGTA+CGG - chr2_3:61107311-61107330 Msa0303890:CDS 35.0%
ATTAAGCCAACAGTGCTTAT+TGG - chr2_3:61107422-61107441 Msa0303890:intron 35.0%
AACAGTGCTTATTGGAACAT+CGG - chr2_3:61107430-61107449 Msa0303890:intron 35.0%
ACTAAGTACCTCGTTAATAG+AGG + chr2_3:61107498-61107517 None:intergenic 35.0%
ATTCAGACATGAGATTGCAT+GGG + chr2_3:61107550-61107569 None:intergenic 35.0%
TATTCAGACATGAGATTGCA+TGG + chr2_3:61107551-61107570 None:intergenic 35.0%
TATATTCAACCGGCGAAAAT+GGG + chr2_3:61107800-61107819 None:intergenic 35.0%
TTATATTCAACCGGCGAAAA+TGG + chr2_3:61107801-61107820 None:intergenic 35.0%
!! ATTTTCGCCGGTTGAATATA+AGG - chr2_3:61107800-61107819 Msa0303890:intron 35.0%
!! TTTTCGCCGGTTGAATATAA+GGG - chr2_3:61107801-61107820 Msa0303890:intron 35.0%
ACTTTCCCCTTATATTCAAC+CGG + chr2_3:61107810-61107829 None:intergenic 35.0%
GCCTAGGTTTAATAATGTCT+GGG - chr2_3:61107959-61107978 Msa0303890:intron 35.0%
TCCCAGACATTATTAAACCT+AGG + chr2_3:61107963-61107982 None:intergenic 35.0%
CAAATCAGTTGTGAACTTAC+AGG + chr2_3:61108019-61108038 None:intergenic 35.0%
! ATCAGAAGAGAACTTTGAGA+AGG - chr2_3:61108148-61108167 Msa0303890:intron 35.0%
! TCAGAAGAGAACTTTGAGAA+GGG - chr2_3:61108149-61108168 Msa0303890:intron 35.0%
! ATCTTTCTGATGTTGGTGAA+TGG + chr2_3:61108188-61108207 None:intergenic 35.0%
AGCTGAAATCTTTCTGATGT+TGG + chr2_3:61108195-61108214 None:intergenic 35.0%
! ATAAGCTTTAGCAGCAACTT+TGG + chr2_3:61108228-61108247 None:intergenic 35.0%
CAAAGATGCAAAACATGTAC+TGG + chr2_3:61108293-61108312 None:intergenic 35.0%
!!! TTGCATCTTTGAAGGCATTT+TGG - chr2_3:61108302-61108321 Msa0303890:CDS 35.0%
TACTTAAGCGCTTATAGCAT+AGG - chr2_3:61108359-61108378 Msa0303890:intron 35.0%
! TTCTTGTTTGCATTTCTGTC+AGG - chr2_3:61108495-61108514 Msa0303890:intron 35.0%
GCAAACTTCACCAAATCTTT+CGG + chr2_3:61108543-61108562 None:intergenic 35.0%
TTATTGTCTCGTTGTATCAC+CGG + chr2_3:61108602-61108621 None:intergenic 35.0%
CAAGTCATAATTGTATTGGG+TGG - chr2_3:61108711-61108730 Msa0303890:intron 35.0%
GGTTAGTAAGGAAATTAGGA+AGG - chr2_3:61108733-61108752 Msa0303890:intron 35.0%
!! CAAGCAGATCAAAAGCATTG+TGG + chr2_3:61106644-61106663 None:intergenic 40.0%
! GGTTTTCAACGACGATATTC+AGG - chr2_3:61106686-61106705 Msa0303890:three_prime_UTR 40.0%
ATCTACTTTGTTCCAGGGAA+CGG - chr2_3:61106788-61106807 Msa0303890:three_prime_UTR 40.0%
!! GTTGCAGCTTTGAAATTGGT+TGG - chr2_3:61106834-61106853 Msa0303890:three_prime_UTR 40.0%
!! TGCAGCTTTGAAATTGGTTG+GGG - chr2_3:61106836-61106855 Msa0303890:three_prime_UTR 40.0%
GGCTTAAGTGTATTGTTTGG+TGG - chr2_3:61107006-61107025 Msa0303890:intron 40.0%
!!! ACAGGTTGGTAGCTACTTTT+AGG - chr2_3:61107079-61107098 Msa0303890:intron 40.0%
!!! CAGGTTGGTAGCTACTTTTA+GGG - chr2_3:61107080-61107099 Msa0303890:intron 40.0%
GCATTTGTCTGCATCAAAGA+TGG + chr2_3:61107163-61107182 None:intergenic 40.0%
ACGAAGTGCGCAAGAATATT+TGG - chr2_3:61107191-61107210 Msa0303890:intron 40.0%
AGTGCGCAAGAATATTTGGT+TGG - chr2_3:61107195-61107214 Msa0303890:intron 40.0%
!! TATTTGGTTGGTGGACTCAA+AGG - chr2_3:61107207-61107226 Msa0303890:intron 40.0%
!! ATTTGGTTGGTGGACTCAAA+GGG - chr2_3:61107208-61107227 Msa0303890:intron 40.0%
! GCATCGAGAAGGTTTTTAAC+AGG + chr2_3:61107301-61107320 None:intergenic 40.0%
! GTACATTAACAGCATCGAGA+AGG + chr2_3:61107312-61107331 None:intergenic 40.0%
! GATGTTCCAATAAGCACTGT+TGG + chr2_3:61107431-61107450 None:intergenic 40.0%
ACAGTGCTTATTGGAACATC+GGG - chr2_3:61107431-61107450 Msa0303890:intron 40.0%
TACATTCGGACTGTGATGTT+GGG + chr2_3:61107637-61107656 None:intergenic 40.0%
! TTTCGCCGGTTGAATATAAG+GGG - chr2_3:61107802-61107821 Msa0303890:intron 40.0%
AAAAATCTTGGGCTTAGACC+TGG + chr2_3:61107845-61107864 None:intergenic 40.0%
GCATACATATTCCCTGGTTT+CGG - chr2_3:61107937-61107956 Msa0303890:intron 40.0%
GGCCTAGGTTTAATAATGTC+TGG - chr2_3:61107958-61107977 Msa0303890:intron 40.0%
AAGGTATGGTTGAAATGGCA+TGG - chr2_3:61108074-61108093 Msa0303890:CDS 40.0%
CTTATTGAATGGAACAGCTG+AGG - chr2_3:61108109-61108128 Msa0303890:intron 40.0%
! TTCTGATGTTGGTGAATGGT+GGG + chr2_3:61108184-61108203 None:intergenic 40.0%
! TTTCTGATGTTGGTGAATGG+TGG + chr2_3:61108185-61108204 None:intergenic 40.0%
GCTGCTAAAGCTTATGAACT+TGG - chr2_3:61108233-61108252 Msa0303890:CDS 40.0%
ACTGGAGTTGAGAAAAGGAA+AGG + chr2_3:61108275-61108294 None:intergenic 40.0%
CATGTACTGGAGTTGAGAAA+AGG + chr2_3:61108280-61108299 None:intergenic 40.0%
AAAATGACGAACACCCTACT+TGG - chr2_3:61108326-61108345 Msa0303890:intron 40.0%
!! TTGTATTGGGTGGGTTAGTA+AGG - chr2_3:61108721-61108740 Msa0303890:intron 40.0%
!! GGTGGGTTAGTAAGGAAATT+AGG - chr2_3:61108729-61108748 Msa0303890:intron 40.0%
! AGGAAATTAGGAAGGTGTAG+TGG - chr2_3:61108741-61108760 Msa0303890:intron 40.0%
TAGTGGTAGTTGGACTACTA+AGG - chr2_3:61108758-61108777 Msa0303890:intron 40.0%
AGTGGTAGTTGGACTACTAA+GGG - chr2_3:61108759-61108778 Msa0303890:intron 40.0%
!! CAAGCAGATCAAAAGCATTG+TGG + chr2_3:61106644-61106663 None:intergenic 40.0%
! GGTTTTCAACGACGATATTC+AGG - chr2_3:61106686-61106705 Msa0303890:three_prime_UTR 40.0%
ATCTACTTTGTTCCAGGGAA+CGG - chr2_3:61106788-61106807 Msa0303890:three_prime_UTR 40.0%
!! GTTGCAGCTTTGAAATTGGT+TGG - chr2_3:61106834-61106853 Msa0303890:three_prime_UTR 40.0%
!! TGCAGCTTTGAAATTGGTTG+GGG - chr2_3:61106836-61106855 Msa0303890:three_prime_UTR 40.0%
GGCTTAAGTGTATTGTTTGG+TGG - chr2_3:61107006-61107025 Msa0303890:intron 40.0%
!!! ACAGGTTGGTAGCTACTTTT+AGG - chr2_3:61107079-61107098 Msa0303890:intron 40.0%
!!! CAGGTTGGTAGCTACTTTTA+GGG - chr2_3:61107080-61107099 Msa0303890:intron 40.0%
GCATTTGTCTGCATCAAAGA+TGG + chr2_3:61107163-61107182 None:intergenic 40.0%
ACGAAGTGCGCAAGAATATT+TGG - chr2_3:61107191-61107210 Msa0303890:intron 40.0%
AGTGCGCAAGAATATTTGGT+TGG - chr2_3:61107195-61107214 Msa0303890:intron 40.0%
!! TATTTGGTTGGTGGACTCAA+AGG - chr2_3:61107207-61107226 Msa0303890:intron 40.0%
!! ATTTGGTTGGTGGACTCAAA+GGG - chr2_3:61107208-61107227 Msa0303890:intron 40.0%
! GCATCGAGAAGGTTTTTAAC+AGG + chr2_3:61107301-61107320 None:intergenic 40.0%
! GTACATTAACAGCATCGAGA+AGG + chr2_3:61107312-61107331 None:intergenic 40.0%
! GATGTTCCAATAAGCACTGT+TGG + chr2_3:61107431-61107450 None:intergenic 40.0%
ACAGTGCTTATTGGAACATC+GGG - chr2_3:61107431-61107450 Msa0303890:intron 40.0%
TACATTCGGACTGTGATGTT+GGG + chr2_3:61107637-61107656 None:intergenic 40.0%
! TTTCGCCGGTTGAATATAAG+GGG - chr2_3:61107802-61107821 Msa0303890:intron 40.0%
AAAAATCTTGGGCTTAGACC+TGG + chr2_3:61107845-61107864 None:intergenic 40.0%
GCATACATATTCCCTGGTTT+CGG - chr2_3:61107937-61107956 Msa0303890:intron 40.0%
GGCCTAGGTTTAATAATGTC+TGG - chr2_3:61107958-61107977 Msa0303890:intron 40.0%
AAGGTATGGTTGAAATGGCA+TGG - chr2_3:61108074-61108093 Msa0303890:CDS 40.0%
CTTATTGAATGGAACAGCTG+AGG - chr2_3:61108109-61108128 Msa0303890:intron 40.0%
! TTCTGATGTTGGTGAATGGT+GGG + chr2_3:61108184-61108203 None:intergenic 40.0%
! TTTCTGATGTTGGTGAATGG+TGG + chr2_3:61108185-61108204 None:intergenic 40.0%
GCTGCTAAAGCTTATGAACT+TGG - chr2_3:61108233-61108252 Msa0303890:CDS 40.0%
ACTGGAGTTGAGAAAAGGAA+AGG + chr2_3:61108275-61108294 None:intergenic 40.0%
CATGTACTGGAGTTGAGAAA+AGG + chr2_3:61108280-61108299 None:intergenic 40.0%
AAAATGACGAACACCCTACT+TGG - chr2_3:61108326-61108345 Msa0303890:intron 40.0%
!! TTGTATTGGGTGGGTTAGTA+AGG - chr2_3:61108721-61108740 Msa0303890:intron 40.0%
!! GGTGGGTTAGTAAGGAAATT+AGG - chr2_3:61108729-61108748 Msa0303890:intron 40.0%
! AGGAAATTAGGAAGGTGTAG+TGG - chr2_3:61108741-61108760 Msa0303890:intron 40.0%
TAGTGGTAGTTGGACTACTA+AGG - chr2_3:61108758-61108777 Msa0303890:intron 40.0%
AGTGGTAGTTGGACTACTAA+GGG - chr2_3:61108759-61108778 Msa0303890:intron 40.0%
!! GCAGCTTTGAAATTGGTTGG+GGG - chr2_3:61106837-61106856 Msa0303890:three_prime_UTR 45.0%
AGGAATAAGACATACCTCGC+CGG + chr2_3:61106898-61106917 None:intergenic 45.0%
! GTGTATTGTTTGGTGGTTGC+AGG - chr2_3:61107013-61107032 Msa0303890:intron 45.0%
! TATTGTTTGGTGGTTGCAGG+CGG - chr2_3:61107016-61107035 Msa0303890:intron 45.0%
!!! GTTGGTAGCTACTTTTAGGG+TGG - chr2_3:61107083-61107102 Msa0303890:intron 45.0%
GCGCAAGAATATTTGGTTGG+TGG - chr2_3:61107198-61107217 Msa0303890:intron 45.0%
TCCAACATTTCAAGAAGCCG+TGG - chr2_3:61107260-61107279 Msa0303890:intron 45.0%
CCAACATTTCAAGAAGCCGT+GGG - chr2_3:61107261-61107280 Msa0303890:intron 45.0%
CTTATTGGAACATCGGGACA+AGG - chr2_3:61107437-61107456 Msa0303890:intron 45.0%
! AGGAAGTGCGTTTACCAAAG+AGG - chr2_3:61107457-61107476 Msa0303890:intron 45.0%
AAGTGCGTTTACCAAAGAGG+TGG - chr2_3:61107460-61107479 Msa0303890:intron 45.0%
GTTTACCAAAGAGGTGGTTG+AGG - chr2_3:61107466-61107485 Msa0303890:intron 45.0%
TTGCATGGGAGATACTAGCT+AGG + chr2_3:61107536-61107555 None:intergenic 45.0%
GTACATTCGGACTGTGATGT+TGG + chr2_3:61107638-61107657 None:intergenic 45.0%
AGCTTCTTCAGCGGTACATT+CGG + chr2_3:61107651-61107670 None:intergenic 45.0%
CCACGTATAAGCTTCTTCAG+CGG + chr2_3:61107660-61107679 None:intergenic 45.0%
TTAAACCTAGGCCGAAACCA+GGG + chr2_3:61107951-61107970 None:intergenic 45.0%
ATTAAACCTAGGCCGAAACC+AGG + chr2_3:61107952-61107971 None:intergenic 45.0%
GTTTGCATTTCTGTCAGGCT+TGG - chr2_3:61108500-61108519 Msa0303890:intron 45.0%
TTCACCAAATCTTTCGGCTG+TGG + chr2_3:61108537-61108556 None:intergenic 45.0%
TGGGGTATACATACAGCTCT+CGG + chr2_3:61108565-61108584 None:intergenic 45.0%
! TAGGAAGGTGTAGTGGTAGT+TGG - chr2_3:61108748-61108767 Msa0303890:intron 45.0%
!! GCAGCTTTGAAATTGGTTGG+GGG - chr2_3:61106837-61106856 Msa0303890:three_prime_UTR 45.0%
AGGAATAAGACATACCTCGC+CGG + chr2_3:61106898-61106917 None:intergenic 45.0%
! GTGTATTGTTTGGTGGTTGC+AGG - chr2_3:61107013-61107032 Msa0303890:intron 45.0%
! TATTGTTTGGTGGTTGCAGG+CGG - chr2_3:61107016-61107035 Msa0303890:intron 45.0%
!!! GTTGGTAGCTACTTTTAGGG+TGG - chr2_3:61107083-61107102 Msa0303890:intron 45.0%
GCGCAAGAATATTTGGTTGG+TGG - chr2_3:61107198-61107217 Msa0303890:intron 45.0%
TCCAACATTTCAAGAAGCCG+TGG - chr2_3:61107260-61107279 Msa0303890:intron 45.0%
CCAACATTTCAAGAAGCCGT+GGG - chr2_3:61107261-61107280 Msa0303890:intron 45.0%
CTTATTGGAACATCGGGACA+AGG - chr2_3:61107437-61107456 Msa0303890:intron 45.0%
! AGGAAGTGCGTTTACCAAAG+AGG - chr2_3:61107457-61107476 Msa0303890:intron 45.0%
AAGTGCGTTTACCAAAGAGG+TGG - chr2_3:61107460-61107479 Msa0303890:intron 45.0%
GTTTACCAAAGAGGTGGTTG+AGG - chr2_3:61107466-61107485 Msa0303890:intron 45.0%
TTGCATGGGAGATACTAGCT+AGG + chr2_3:61107536-61107555 None:intergenic 45.0%
GTACATTCGGACTGTGATGT+TGG + chr2_3:61107638-61107657 None:intergenic 45.0%
AGCTTCTTCAGCGGTACATT+CGG + chr2_3:61107651-61107670 None:intergenic 45.0%
CCACGTATAAGCTTCTTCAG+CGG + chr2_3:61107660-61107679 None:intergenic 45.0%
TTAAACCTAGGCCGAAACCA+GGG + chr2_3:61107951-61107970 None:intergenic 45.0%
ATTAAACCTAGGCCGAAACC+AGG + chr2_3:61107952-61107971 None:intergenic 45.0%
GTTTGCATTTCTGTCAGGCT+TGG - chr2_3:61108500-61108519 Msa0303890:intron 45.0%
TTCACCAAATCTTTCGGCTG+TGG + chr2_3:61108537-61108556 None:intergenic 45.0%
TGGGGTATACATACAGCTCT+CGG + chr2_3:61108565-61108584 None:intergenic 45.0%
! TAGGAAGGTGTAGTGGTAGT+TGG - chr2_3:61108748-61108767 Msa0303890:intron 45.0%
TTTGTTCCAGGGAACGGCAT+CGG - chr2_3:61106794-61106813 Msa0303890:three_prime_UTR 50.0%
! ATTGTTTGGTGGTTGCAGGC+GGG - chr2_3:61107017-61107036 Msa0303890:intron 50.0%
GATGCAGACAAATGCCCCAT+TGG - chr2_3:61107168-61107187 Msa0303890:intron 50.0%
TCTTGCGCACTTCGTCCAAT+GGG + chr2_3:61107186-61107205 None:intergenic 50.0%
TTCTTGCGCACTTCGTCCAA+TGG + chr2_3:61107187-61107206 None:intergenic 50.0%
CCCACGGCTTCTTGAAATGT+TGG + chr2_3:61107264-61107283 None:intergenic 50.0%
CCGCTGAAGAAGCTTATACG+TGG - chr2_3:61107657-61107676 Msa0303890:intron 50.0%
AGAAGCTTATACGTGGACCC+AGG - chr2_3:61107664-61107683 Msa0303890:intron 50.0%
GACGTGCGATCTTTGCAAGT+GGG - chr2_3:61107772-61107791 Msa0303890:intron 50.0%
!! AAGGGGAAAGTGTTTGTGCC+TGG - chr2_3:61107819-61107838 Msa0303890:intron 50.0%
ATATTCCCTGGTTTCGGCCT+AGG - chr2_3:61107943-61107962 Msa0303890:intron 50.0%
CAGGTCGTCATGTACACGAA+TGG + chr2_3:61107986-61108005 None:intergenic 50.0%
ACTTACAGGCAGCAAGAAGC+AGG + chr2_3:61108005-61108024 None:intergenic 50.0%
GAATGGAACAGCTGAGGCAT+TGG - chr2_3:61108115-61108134 Msa0303890:intron 50.0%
CCAAATCTTTCGGCTGTGGA+AGG + chr2_3:61108533-61108552 None:intergenic 50.0%
CCTTCCACAGCCGAAAGATT+TGG - chr2_3:61108530-61108549 Msa0303890:intron 50.0%
GTATCACCGGTAGCTTCTGT+AGG + chr2_3:61108589-61108608 None:intergenic 50.0%
TTTGTTCCAGGGAACGGCAT+CGG - chr2_3:61106794-61106813 Msa0303890:three_prime_UTR 50.0%
! ATTGTTTGGTGGTTGCAGGC+GGG - chr2_3:61107017-61107036 Msa0303890:intron 50.0%
GATGCAGACAAATGCCCCAT+TGG - chr2_3:61107168-61107187 Msa0303890:intron 50.0%
TCTTGCGCACTTCGTCCAAT+GGG + chr2_3:61107186-61107205 None:intergenic 50.0%
TTCTTGCGCACTTCGTCCAA+TGG + chr2_3:61107187-61107206 None:intergenic 50.0%
CCCACGGCTTCTTGAAATGT+TGG + chr2_3:61107264-61107283 None:intergenic 50.0%
CCGCTGAAGAAGCTTATACG+TGG - chr2_3:61107657-61107676 Msa0303890:intron 50.0%
AGAAGCTTATACGTGGACCC+AGG - chr2_3:61107664-61107683 Msa0303890:intron 50.0%
GACGTGCGATCTTTGCAAGT+GGG - chr2_3:61107772-61107791 Msa0303890:intron 50.0%
!! AAGGGGAAAGTGTTTGTGCC+TGG - chr2_3:61107819-61107838 Msa0303890:intron 50.0%
ATATTCCCTGGTTTCGGCCT+AGG - chr2_3:61107943-61107962 Msa0303890:intron 50.0%
CAGGTCGTCATGTACACGAA+TGG + chr2_3:61107986-61108005 None:intergenic 50.0%
ACTTACAGGCAGCAAGAAGC+AGG + chr2_3:61108005-61108024 None:intergenic 50.0%
GAATGGAACAGCTGAGGCAT+TGG - chr2_3:61108115-61108134 Msa0303890:intron 50.0%
CCAAATCTTTCGGCTGTGGA+AGG + chr2_3:61108533-61108552 None:intergenic 50.0%
CCTTCCACAGCCGAAAGATT+TGG - chr2_3:61108530-61108549 Msa0303890:intron 50.0%
GTATCACCGGTAGCTTCTGT+AGG + chr2_3:61108589-61108608 None:intergenic 50.0%
!! ACGGCATCGGTTGTTCTTGC+TGG - chr2_3:61106807-61106826 Msa0303890:three_prime_UTR 55.0%
CTTGCGCACTTCGTCCAATG+GGG + chr2_3:61107185-61107204 None:intergenic 55.0%
GGTTCGTGTTCATGAGCCCA+CGG + chr2_3:61107280-61107299 None:intergenic 55.0%
CATCGCCTCAACCACCTCTT+TGG + chr2_3:61107474-61107493 None:intergenic 55.0%
CAAAGAGGTGGTTGAGGCGA+TGG - chr2_3:61107472-61107491 Msa0303890:intron 55.0%
GGCGATGGCCTCTATTAACG+AGG - chr2_3:61107487-61107506 Msa0303890:intron 55.0%
GGACGTGCGATCTTTGCAAG+TGG - chr2_3:61107771-61107790 Msa0303890:intron 55.0%
! AAGTGGGAGCCCATTTTCGC+CGG - chr2_3:61107788-61107807 Msa0303890:intron 55.0%
!! GAAAGTGTTTGTGCCTGGCC+AGG - chr2_3:61107824-61107843 Msa0303890:intron 55.0%
ACCGGTAGCTTCTGTAGGCT+GGG + chr2_3:61108584-61108603 None:intergenic 55.0%
!! ACGGCATCGGTTGTTCTTGC+TGG - chr2_3:61106807-61106826 Msa0303890:three_prime_UTR 55.0%
CTTGCGCACTTCGTCCAATG+GGG + chr2_3:61107185-61107204 None:intergenic 55.0%
GGTTCGTGTTCATGAGCCCA+CGG + chr2_3:61107280-61107299 None:intergenic 55.0%
CATCGCCTCAACCACCTCTT+TGG + chr2_3:61107474-61107493 None:intergenic 55.0%
CAAAGAGGTGGTTGAGGCGA+TGG - chr2_3:61107472-61107491 Msa0303890:intron 55.0%
GGCGATGGCCTCTATTAACG+AGG - chr2_3:61107487-61107506 Msa0303890:intron 55.0%
GGACGTGCGATCTTTGCAAG+TGG - chr2_3:61107771-61107790 Msa0303890:intron 55.0%
! AAGTGGGAGCCCATTTTCGC+CGG - chr2_3:61107788-61107807 Msa0303890:intron 55.0%
!! GAAAGTGTTTGTGCCTGGCC+AGG - chr2_3:61107824-61107843 Msa0303890:intron 55.0%
ACCGGTAGCTTCTGTAGGCT+GGG + chr2_3:61108584-61108603 None:intergenic 55.0%
GAACAACCGATGCCGTTCCC+TGG + chr2_3:61106803-61106822 None:intergenic 60.0%
!! CTTATTCCTTGGTGCCGGCG+AGG - chr2_3:61106881-61106900 Msa0303890:three_prime_UTR 60.0%
TCTTGGGCTTAGACCTGGCC+AGG + chr2_3:61107840-61107859 None:intergenic 60.0%
TTTCGGCTGTGGAAGGCGAG+TGG + chr2_3:61108526-61108545 None:intergenic 60.0%
CCGGTAGCTTCTGTAGGCTG+GGG + chr2_3:61108583-61108602 None:intergenic 60.0%
CCCCAGCCTACAGAAGCTAC+CGG - chr2_3:61108580-61108599 Msa0303890:intron 60.0%
CACCGGTAGCTTCTGTAGGC+TGG + chr2_3:61108585-61108604 None:intergenic 60.0%
GAACAACCGATGCCGTTCCC+TGG + chr2_3:61106803-61106822 None:intergenic 60.0%
!! CTTATTCCTTGGTGCCGGCG+AGG - chr2_3:61106881-61106900 Msa0303890:three_prime_UTR 60.0%
TCTTGGGCTTAGACCTGGCC+AGG + chr2_3:61107840-61107859 None:intergenic 60.0%
TTTCGGCTGTGGAAGGCGAG+TGG + chr2_3:61108526-61108545 None:intergenic 60.0%
CCGGTAGCTTCTGTAGGCTG+GGG + chr2_3:61108583-61108602 None:intergenic 60.0%
CCCCAGCCTACAGAAGCTAC+CGG - chr2_3:61108580-61108599 Msa0303890:intron 60.0%
CACCGGTAGCTTCTGTAGGC+TGG + chr2_3:61108585-61108604 None:intergenic 60.0%
GACATACCTCGCCGGCACCA+AGG + chr2_3:61106890-61106909 None:intergenic 65.0%
GACATACCTCGCCGGCACCA+AGG + chr2_3:61106890-61106909 None:intergenic 65.0%
TGGTGGTTGCAGGCGGGCAC+TGG - chr2_3:61107023-61107042 Msa0303890:intron 70.0%
TGGTGGTTGCAGGCGGGCAC+TGG - chr2_3:61107023-61107042 Msa0303890:intron 70.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 61106636 61108880 61106636 ID=Msa0303890;Name=Msa0303890
chr2_3 mRNA 61106636 61108880 61106636 ID=Msa0303890-mRNA-1;Parent=Msa0303890;Name=Msa0303890-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0|1|0.9|1|1|1|10|275|307
chr2_3 exon 61106636 61106999 61106636 ID=Msa0303890-mRNA-1:exon:20135;Parent=Msa0303890-mRNA-1
chr2_3 exon 61107262 61107390 61107262 ID=Msa0303890-mRNA-1:exon:20134;Parent=Msa0303890-mRNA-1
chr2_3 exon 61107498 61107588 61107498 ID=Msa0303890-mRNA-1:exon:20133;Parent=Msa0303890-mRNA-1
chr2_3 exon 61107671 61107745 61107671 ID=Msa0303890-mRNA-1:exon:20132;Parent=Msa0303890-mRNA-1
chr2_3 exon 61107831 61107908 61107831 ID=Msa0303890-mRNA-1:exon:20131;Parent=Msa0303890-mRNA-1
chr2_3 exon 61108008 61108097 61108008 ID=Msa0303890-mRNA-1:exon:20130;Parent=Msa0303890-mRNA-1
chr2_3 exon 61108189 61108341 61108189 ID=Msa0303890-mRNA-1:exon:20129;Parent=Msa0303890-mRNA-1
chr2_3 exon 61108434 61108481 61108434 ID=Msa0303890-mRNA-1:exon:20128;Parent=Msa0303890-mRNA-1
chr2_3 exon 61108614 61108712 61108614 ID=Msa0303890-mRNA-1:exon:20127;Parent=Msa0303890-mRNA-1
chr2_3 exon 61108809 61108880 61108809 ID=Msa0303890-mRNA-1:exon:20126;Parent=Msa0303890-mRNA-1
chr2_3 CDS 61108809 61108880 61108809 ID=Msa0303890-mRNA-1:cds;Parent=Msa0303890-mRNA-1
chr2_3 CDS 61108614 61108712 61108614 ID=Msa0303890-mRNA-1:cds;Parent=Msa0303890-mRNA-1
chr2_3 CDS 61108434 61108481 61108434 ID=Msa0303890-mRNA-1:cds;Parent=Msa0303890-mRNA-1
chr2_3 CDS 61108189 61108341 61108189 ID=Msa0303890-mRNA-1:cds;Parent=Msa0303890-mRNA-1
chr2_3 CDS 61108008 61108097 61108008 ID=Msa0303890-mRNA-1:cds;Parent=Msa0303890-mRNA-1
chr2_3 CDS 61107831 61107908 61107831 ID=Msa0303890-mRNA-1:cds;Parent=Msa0303890-mRNA-1
chr2_3 CDS 61107671 61107745 61107671 ID=Msa0303890-mRNA-1:cds;Parent=Msa0303890-mRNA-1
chr2_3 CDS 61107498 61107588 61107498 ID=Msa0303890-mRNA-1:cds;Parent=Msa0303890-mRNA-1
chr2_3 CDS 61107262 61107390 61107262 ID=Msa0303890-mRNA-1:cds;Parent=Msa0303890-mRNA-1
chr2_3 CDS 61106911 61106999 61106911 ID=Msa0303890-mRNA-1:cds;Parent=Msa0303890-mRNA-1
chr2_3 three_prime_UTR 61106636 61106910 61106636 ID=Msa0303890-mRNA-1:three_prime_utr;Parent=Msa0303890-mRNA-1
Gene Sequence

>Msa0303890

GCGAACCACAATGCTTTTGATCTGCTTGAAAAATATAGATCAACACATCTGGTTTTCAACGACGATATTCAGGGAACGGCATCGGTTGTTCTTGCTGGACTAGTTGCAGCTTTGAAATTGGTTGGGGGAAACTTAGCTGACCACAAATTCTTATTCCTTGGTGCCGGCGAGGCGGGCACTGGAATTGCAGAGCTCATTGCACTTGAAACATCTAAACAGACAAATGCCCCATTGGACGAAGTGCGCAAGAATATTTGGTTGGTGGACTCAAAGGGATTGATTGTCAGTTCCCGTAAAGAATCACTCCAACATTTCAAGAAGCCGTGGGCTCATGAACACGAACCTGTTAAAAACCTTCTCGATGCTGTTAATAAAATTAAGCCAACAGTGCTTATTGGAACATCGGGACAAGGAAGTGCGTTTACCAAAGAGGTGGTTGAGGCGATGGCCTCTATTAACGAGAAACCTATTATTCTCTCTCTTTCGAACCCAACATCACAGTCCGAATGTACCGCTGAAGAAGCTTATACGTGGACCCAGGGACGTGCGATCTTTGCAAGTGGGAGCCCATTTTCGCCGGTTGAATATAAGGGGAAAGTGTTTGTGCCTGGCCAGGCAAATAATGCATACATATTCCCTGGTTTCGGCCTAGGTTTAATAATGTCTGGGACCATTCGTGTACATGACGACCTGCTTCTTGCTGCCTCTGAGGCATTGGCTGAACAAGTATCAGAAGAGAACTTTGAGAAGGGTTTGATATTCCCACCATTCACCAACATCAGAAAGATTTCAGCTCACATAGCTGCCAAAGTTGCTGCTAAAGCTTATGAACTTGGCTTGGCCACTCGCCTTCCACAGCCGAAAGATTTGGTGAAGTTTGCCGAGAGCTGTATGTATACCCCAGCCTACAGAAGCTACCGGTGA
Protein sequence

>Msa0303890

ANHNAFDLLEKYRSTHLVFNDDIQGTASVVLAGLVAALKLVGGNLADHKFLFLGAGEAGTGIAELIALETSKQTNAPLDEVRKNIWLVDSKGLIVSSRKESLQHFKKPWAHEHEPVKNLLDAVNKIKPTVLIGTSGQGSAFTKEVVEAMASINEKPIILSLSNPTSQSECTAEEAYTWTQGRAIFASGSPFSPVEYKGKVFVPGQANNAYIFPGFGLGLIMSGTIRVHDDLLLAASEALAEQVSEENFEKGLIFPPFTNIRKISAHIAAKVAAKAYELGLATRLPQPKDLVKFAESCMYTPAYRSYR*