Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0828060 | XP_003613687.3 | 90.659 | 182 | 10 | 1 | 1 | 175 | 1 | 182 | 1.14e-116 | 338 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0828060 | sp|Q9S784|HA22C_ARATH | 53.723 | 188 | 66 | 5 | 2 | 175 | 4 | 184 | 6.75e-65 | 200 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0828060 | G7KCI8 | 90.659 | 182 | 10 | 1 | 1 | 175 | 1 | 182 | 5.47e-117 | 338 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0724800 | Msa0828060 | 0.914521 | 1.739066e-84 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0828060 | MtrunA17_Chr5g0416561 | 90.659 | 182 | 10 | 1 | 1 | 175 | 58 | 239 | 3.56e-120 | 339 |
| Msa0828060 | MtrunA17_Chr4g0060581 | 55.747 | 174 | 58 | 4 | 8 | 173 | 11 | 173 | 1.94e-63 | 193 |
| Msa0828060 | MtrunA17_Chr3g0097141 | 38.217 | 157 | 92 | 1 | 3 | 159 | 5 | 156 | 4.33e-31 | 110 |
| Msa0828060 | MtrunA17_Chr5g0443431 | 41.216 | 148 | 69 | 2 | 18 | 159 | 20 | 155 | 1.56e-30 | 108 |
| Msa0828060 | MtrunA17_Chr8g0386221 | 45.882 | 85 | 43 | 1 | 22 | 103 | 24 | 108 | 7.13e-21 | 82.8 |
| Msa0828060 | MtrunA17_Chr4g0049651 | 35.821 | 134 | 76 | 3 | 18 | 151 | 23 | 146 | 2.08e-18 | 81.6 |
| Msa0828060 | MtrunA17_Chr4g0049701 | 33.333 | 141 | 84 | 3 | 12 | 152 | 14 | 144 | 7.51e-18 | 79.3 |
| Msa0828060 | MtrunA17_Chr3g0132031 | 42.045 | 88 | 51 | 0 | 9 | 96 | 11 | 98 | 8.20e-18 | 75.9 |
| Msa0828060 | MtrunA17_Chr4g0049671 | 38.710 | 124 | 66 | 3 | 28 | 151 | 24 | 137 | 3.09e-17 | 78.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0828060 | AT1G69700.1 | 53.723 | 188 | 66 | 5 | 2 | 175 | 4 | 184 | 6.86e-66 | 200 |
| Msa0828060 | AT1G74520.1 | 49.123 | 171 | 70 | 3 | 1 | 163 | 1 | 162 | 3.63e-57 | 177 |
| Msa0828060 | AT1G74520.2 | 49.123 | 171 | 70 | 3 | 1 | 163 | 1 | 162 | 3.63e-57 | 177 |
| Msa0828060 | AT5G62490.1 | 39.891 | 183 | 86 | 5 | 1 | 175 | 1 | 167 | 4.03e-38 | 129 |
| Msa0828060 | AT2G42820.1 | 32.298 | 161 | 95 | 3 | 7 | 159 | 2 | 156 | 1.05e-25 | 97.1 |
| Msa0828060 | AT5G50720.1 | 45.455 | 88 | 48 | 0 | 9 | 96 | 11 | 98 | 6.00e-19 | 78.2 |
| Msa0828060 | AT4G24960.3 | 43.038 | 79 | 45 | 0 | 18 | 96 | 1 | 79 | 2.16e-17 | 74.7 |
| Msa0828060 | AT4G24960.2 | 50.820 | 61 | 30 | 0 | 36 | 96 | 7 | 67 | 2.52e-17 | 73.6 |
| Msa0828060 | AT4G24960.1 | 43.038 | 79 | 45 | 0 | 18 | 96 | 20 | 98 | 4.97e-17 | 73.9 |
Find 48 sgRNAs with CRISPR-Local
Find 199 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCAACAATGGCTCACTTAT+TGG | 0.141168 | 5_4:+338110 | Msa0828060:CDS |
| TTGGTTCTTCCTCACTTTAA+TGG | 0.200883 | 5_4:+340280 | Msa0828060:CDS |
| CAACAATATTCTTGGTTCTA+TGG | 0.244073 | 5_4:-338084 | None:intergenic |
| AACTTTGCATAAGGCCAAAT+TGG | 0.249813 | 5_4:-340241 | None:intergenic |
| CTGCCAAACATGGGTGCTTC+TGG | 0.275435 | 5_4:+337777 | Msa0828060:exon |
| TCACTTTAATAATTCTATAA+TGG | 0.279272 | 5_4:+340808 | Msa0828060:three_prime_UTR |
| TTTGTTGAAGAGTGGGAAAA+AGG | 0.291665 | 5_4:-337749 | None:intergenic |
| TTGGTCATCAACAATATTCT+TGG | 0.302983 | 5_4:-338092 | None:intergenic |
| TTATTAAAGTGACTAAATTA+AGG | 0.315991 | 5_4:-340797 | None:intergenic |
| GAGAGGTACATGCAAGAAAA+TGG | 0.319550 | 5_4:+340451 | Msa0828060:CDS |
| CCAACAATGGCTCACTTATT+GGG | 0.324995 | 5_4:+338111 | Msa0828060:CDS |
| TACCACATTTGCGAAGTTCC+TGG | 0.390647 | 5_4:-340376 | None:intergenic |
| AACTTACACTTCAAGAACTT+TGG | 0.394572 | 5_4:-338173 | None:intergenic |
| CAAAGTTGATACTGAGTTGT+TGG | 0.408295 | 5_4:+340257 | Msa0828060:CDS |
| CTTCTAATCTTCTCATGAGT+TGG | 0.409118 | 5_4:-341064 | None:intergenic |
| TTGCCAGAAGCACCCATGTT+TGG | 0.413835 | 5_4:-337780 | None:intergenic |
| GCGGCATTTGTGGTAATTGT+GGG | 0.420764 | 5_4:-340348 | None:intergenic |
| CCCAATAAGTGAGCCATTGT+TGG | 0.422265 | 5_4:-338111 | None:intergenic |
| GGGACTAATGAGAAGAGAAA+AGG | 0.425839 | 5_4:-337716 | None:intergenic |
| CCTGGCATTAGCGGCATTTG+TGG | 0.433095 | 5_4:-340358 | None:intergenic |
| AGCGGCATTTGTGGTAATTG+TGG | 0.440775 | 5_4:-340349 | None:intergenic |
| AGATATGCTGCAGGGTCTGC+TGG | 0.449211 | 5_4:+340933 | Msa0828060:three_prime_UTR |
| GGACTAATGAGAAGAGAAAA+GGG | 0.454767 | 5_4:-337715 | None:intergenic |
| CTCAGTATCAACTTTGCATA+AGG | 0.465176 | 5_4:-340250 | None:intergenic |
| CAGTGTGCAAGTTTGTTTGA+TGG | 0.482841 | 5_4:+340876 | Msa0828060:three_prime_UTR |
| GAATCTAAAGCAAGGAGGAA+TGG | 0.484072 | 5_4:+340701 | Msa0828060:CDS |
| GCAGCATATCTATGTTAAGT+TGG | 0.495163 | 5_4:-340921 | None:intergenic |
| TGCAAGTTTGTTTGATGGGT+CGG | 0.497811 | 5_4:+340881 | Msa0828060:three_prime_UTR |
| AAACATCATAACATGTCTCT+TGG | 0.508337 | 5_4:-340770 | None:intergenic |
| TTTCTCAACATGCCACAGAA+TGG | 0.510542 | 5_4:+341001 | Msa0828060:three_prime_UTR |
| CCACAAATGCCGCTAATGCC+AGG | 0.511549 | 5_4:+340358 | Msa0828060:CDS |
| TGTCAGATATGCTTCAATCA+AGG | 0.516461 | 5_4:+338061 | Msa0828060:intron |
| ACTTAACATAGATATGCTGC+AGG | 0.521360 | 5_4:+340924 | Msa0828060:three_prime_UTR |
| TGCGAAGTTCCTGGCATTAG+CGG | 0.524899 | 5_4:-340367 | None:intergenic |
| AGTGTGCAAGTTTGTTTGAT+GGG | 0.540699 | 5_4:+340877 | Msa0828060:three_prime_UTR |
| CGCAAATGTGGTATGTTCCA+CGG | 0.554204 | 5_4:+340386 | Msa0828060:CDS |
| TGCCAGGAACTTCGCAAATG+TGG | 0.559503 | 5_4:+340374 | Msa0828060:CDS |
| AATTGTGGGTTCATGTAGAA+TGG | 0.566744 | 5_4:-340334 | None:intergenic |
| GTTGATACTGAGTTGTTGGT+TGG | 0.567156 | 5_4:+340261 | Msa0828060:CDS |
| TTACTGAATATGTTCTTCCG+TGG | 0.635410 | 5_4:-340403 | None:intergenic |
| ATATTGTTGATGACCAACAA+TGG | 0.658273 | 5_4:+338098 | Msa0828060:CDS |
| CTGACAGAGAATCTAAAGCA+AGG | 0.668145 | 5_4:+340693 | Msa0828060:CDS |
| TGTGCTGCTCCATTAAAGTG+AGG | 0.689754 | 5_4:-340289 | None:intergenic |
| CTTAACATAGATATGCTGCA+GGG | 0.701242 | 5_4:+340925 | Msa0828060:three_prime_UTR |
| ATTGATGTGTAACCATTCTG+TGG | 0.703537 | 5_4:-341013 | None:intergenic |
| ATTTGAAAGACTCATCACAA+AGG | 0.722475 | 5_4:+340483 | Msa0828060:CDS |
| ATGTTCTTAGTGCTGCAGAG+AGG | 0.731265 | 5_4:+340434 | Msa0828060:CDS |
| ACAGAGAATCTAAAGCAAGG+AGG | 0.733583 | 5_4:+340696 | Msa0828060:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATAATGATATTTTTCAAAT+AGG | + | chr5_4:338415-338434 | Msa0828060:intron | 10.0% |
| !!! | TTTTTAAAATAGAATTTTCA+AGG | + | chr5_4:338623-338642 | Msa0828060:intron | 10.0% |
| !! | AAATTTAGTAATTTAAACTT+CGG | - | chr5_4:340561-340580 | None:intergenic | 10.0% |
| !! | AAATTATAACATACTTACAA+AGG | - | chr5_4:337976-337995 | None:intergenic | 15.0% |
| !!! | TTAACATAAAGTCTATTTTA+TGG | + | chr5_4:338288-338307 | Msa0828060:intron | 15.0% |
| !!! | TAACATAAAGTCTATTTTAT+GGG | + | chr5_4:338289-338308 | Msa0828060:intron | 15.0% |
| !!! | ATCAAATGATTTTATGATAT+TGG | - | chr5_4:339132-339151 | None:intergenic | 15.0% |
| !! | TGAATTAAAAATGTGATAAT+GGG | - | chr5_4:339257-339276 | None:intergenic | 15.0% |
| !! | ATGAATTAAAAATGTGATAA+TGG | - | chr5_4:339258-339277 | None:intergenic | 15.0% |
| !!! | ATTATCACATTTTTAATTCA+TGG | + | chr5_4:339257-339276 | Msa0828060:intron | 15.0% |
| !!! | TTCAAGATTTTTTTTTTAGT+TGG | + | chr5_4:340023-340042 | Msa0828060:intron | 15.0% |
| !!! | TCAAGATTTTTTTTTTAGTT+GGG | + | chr5_4:340024-340043 | Msa0828060:intron | 15.0% |
| !! | ATTACTAAATTTGAAAAACT+AGG | + | chr5_4:340569-340588 | Msa0828060:intron | 15.0% |
| !! | TTATTAAAGTGACTAAATTA+AGG | - | chr5_4:340800-340819 | None:intergenic | 15.0% |
| !! | TCACTTTAATAATTCTATAA+TGG | + | chr5_4:340808-340827 | Msa0828060:three_prime_UTR | 15.0% |
| !!! | TTTTTTCTTATAATAGAGAC+TGG | + | chr5_4:338555-338574 | Msa0828060:intron | 20.0% |
| !!! | TTTTTCTTATAATAGAGACT+GGG | + | chr5_4:338556-338575 | Msa0828060:intron | 20.0% |
| !! | AAAAAACTAATCATAACTGA+AGG | - | chr5_4:338870-338889 | None:intergenic | 20.0% |
| !!! | AAATGATTTTATGATATTGG+AGG | - | chr5_4:339129-339148 | None:intergenic | 20.0% |
| !!! | CATATCACCTAATTTTTTTT+TGG | + | chr5_4:340514-340533 | Msa0828060:intron | 20.0% |
| !!! | CTGTTGTTTTTTTAGAAAAT+TGG | + | chr5_4:340598-340617 | Msa0828060:intron | 20.0% |
| !!! | AGAATTTTTTGTTGAAGAGT+GGG | - | chr5_4:337759-337778 | None:intergenic | 25.0% |
| ! | GCTATTTAACATAGATACAA+AGG | - | chr5_4:337862-337881 | None:intergenic | 25.0% |
| ! | TACTTACAAAGGATAAACAA+GGG | - | chr5_4:337965-337984 | None:intergenic | 25.0% |
| ! | ATACTTACAAAGGATAAACA+AGG | - | chr5_4:337966-337985 | None:intergenic | 25.0% |
| !!! | GTGAGTTTTTTTTGATCTAT+TGG | + | chr5_4:338029-338048 | Msa0828060:intron | 25.0% |
| !!! | AAGTTTTTTATGACTGAATC+TGG | + | chr5_4:338191-338210 | Msa0828060:intron | 25.0% |
| ! | GGTTTATAGAAAAGTTAGAA+AGG | + | chr5_4:338310-338329 | Msa0828060:intron | 25.0% |
| !!! | AATTGCTAATTTTTGGTCAA+CGG | - | chr5_4:338474-338493 | None:intergenic | 25.0% |
| !! | CTGAAGTAATTGCTAATTTT+TGG | - | chr5_4:338481-338500 | None:intergenic | 25.0% |
| ! | TTATCCTTTAATTCTTCTCT+TGG | - | chr5_4:338699-338718 | None:intergenic | 25.0% |
| ! | ACATAATCACTCATTTAAAC+AGG | - | chr5_4:338744-338763 | None:intergenic | 25.0% |
| ! | ACTATTAAGGCTACTAATTT+GGG | - | chr5_4:338771-338790 | None:intergenic | 25.0% |
| ! | AACTATTAAGGCTACTAATT+TGG | - | chr5_4:338772-338791 | None:intergenic | 25.0% |
| ! | ACATGTTAATGCAACTATTA+AGG | - | chr5_4:338784-338803 | None:intergenic | 25.0% |
| ! | AATGAAAAGGATCATAGTAA+AGG | + | chr5_4:339663-339682 | Msa0828060:intron | 25.0% |
| ! | AAGATCTTAATGTTTGGTAA+CGG | + | chr5_4:339735-339754 | Msa0828060:intron | 25.0% |
| !! | TATCATAGCATTGAAATCTT+GGG | - | chr5_4:339922-339941 | None:intergenic | 25.0% |
| !! | ATATCATAGCATTGAAATCT+TGG | - | chr5_4:339923-339942 | None:intergenic | 25.0% |
| ! | AAATCTTGAACTATGAAGTA+AGG | - | chr5_4:340013-340032 | None:intergenic | 25.0% |
| ! | TATCAACTTCAAAAAAGTCT+TGG | - | chr5_4:340203-340222 | None:intergenic | 25.0% |
| !!! | AGTTGATAATTGCAATTTTC+AGG | + | chr5_4:340215-340234 | Msa0828060:intron | 25.0% |
| ! | CTCTTCACCAAAAAAAAATT+AGG | - | chr5_4:340524-340543 | None:intergenic | 25.0% |
| !!! | CAGAATTTTTTGTTGAAGAG+TGG | - | chr5_4:337760-337779 | None:intergenic | 30.0% |
| ACAAAAAATTCTGCCAAACA+TGG | + | chr5_4:337767-337786 | Msa0828060:exon | 30.0% | |
| CAAAAAATTCTGCCAAACAT+GGG | + | chr5_4:337768-337787 | Msa0828060:exon | 30.0% | |
| ! | AGCAAGAACATCAAAGTTTT+TGG | - | chr5_4:337826-337845 | None:intergenic | 30.0% |
| !!! | TCTTGTGTTTTTTTTTGTGC+AGG | + | chr5_4:337929-337948 | Msa0828060:intron | 30.0% |
| !! | CAACAATATTCTTGGTTCTA+TGG | - | chr5_4:338087-338106 | None:intergenic | 30.0% |
| TTGGTCATCAACAATATTCT+TGG | - | chr5_4:338095-338114 | None:intergenic | 30.0% | |
| !! | ATATTGTTGATGACCAACAA+TGG | + | chr5_4:338098-338117 | Msa0828060:CDS | 30.0% |
| AACTTACACTTCAAGAACTT+TGG | - | chr5_4:338176-338195 | None:intergenic | 30.0% | |
| !! | TAAGTTTTGACCAAGACAAA+AGG | - | chr5_4:338448-338467 | None:intergenic | 30.0% |
| ATGTATCTGATCTATACATC+AGG | - | chr5_4:338506-338525 | None:intergenic | 30.0% | |
| TCAACCAAGAGAAGAATTAA+AGG | + | chr5_4:338692-338711 | Msa0828060:intron | 30.0% | |
| ! | TTAACATGTCTAGTAGGTTT+TGG | + | chr5_4:338795-338814 | Msa0828060:intron | 30.0% |
| ! | GATTTGTTCACAACAATTGT+GGG | - | chr5_4:338907-338926 | None:intergenic | 30.0% |
| !! | TGATTTGTTCACAACAATTG+TGG | - | chr5_4:338908-338927 | None:intergenic | 30.0% |
| !! | GTATTTGTACTAGTCTTCTA+TGG | + | chr5_4:338979-338998 | Msa0828060:intron | 30.0% |
| !! | GTTTTGTTAGAGTTAGATTG+AGG | + | chr5_4:339044-339063 | Msa0828060:intron | 30.0% |
| ! | AAAGGTAACGTTTTTCTCTT+TGG | - | chr5_4:339105-339124 | None:intergenic | 30.0% |
| ! | TTTTATGATATTGGAGGCAA+AGG | - | chr5_4:339123-339142 | None:intergenic | 30.0% |
| AACTATGTGATCAAGTCATT+GGG | - | chr5_4:339315-339334 | None:intergenic | 30.0% | |
| TAACTATGTGATCAAGTCAT+TGG | - | chr5_4:339316-339335 | None:intergenic | 30.0% | |
| TATGTAACTATGTGATCATG+AGG | - | chr5_4:339411-339430 | None:intergenic | 30.0% | |
| TTATCCTTACCATGATCATA+TGG | + | chr5_4:339471-339490 | Msa0828060:intron | 30.0% | |
| TAAACCATATGATCATGGTA+AGG | - | chr5_4:339478-339497 | None:intergenic | 30.0% | |
| AGTTAAGACAAAAACAAACC+TGG | - | chr5_4:339639-339658 | None:intergenic | 30.0% | |
| !!! | GGTTTGTTTTTGTCTTAACT+TGG | + | chr5_4:339639-339658 | Msa0828060:intron | 30.0% |
| ! | GTCTTAACTTGGAAATGAAA+AGG | + | chr5_4:339650-339669 | Msa0828060:intron | 30.0% |
| GAACTCAAGATCTTAATGTT+TGG | + | chr5_4:339729-339748 | Msa0828060:intron | 30.0% | |
| GCCATTTGATTATGATATCA+GGG | - | chr5_4:339896-339915 | None:intergenic | 30.0% | |
| AGCCATTTGATTATGATATC+AGG | - | chr5_4:339897-339916 | None:intergenic | 30.0% | |
| ATGATCACACATTTACCAAT+TGG | + | chr5_4:339941-339960 | Msa0828060:intron | 30.0% | |
| ATAACAACAAAAAAGAGCAG+TGG | - | chr5_4:340075-340094 | None:intergenic | 30.0% | |
| ATTTGAAAGACTCATCACAA+AGG | + | chr5_4:340483-340502 | Msa0828060:CDS | 30.0% | |
| AAACATCATAACATGTCTCT+TGG | - | chr5_4:340773-340792 | None:intergenic | 30.0% | |
| GGACTAATGAGAAGAGAAAA+GGG | - | chr5_4:337718-337737 | None:intergenic | 35.0% | |
| TTGTTGAAGAGTGGGAAAAA+GGG | - | chr5_4:337751-337770 | None:intergenic | 35.0% | |
| TTTGTTGAAGAGTGGGAAAA+AGG | - | chr5_4:337752-337771 | None:intergenic | 35.0% | |
| !!! | TTTTTTTTTGTGCAGGCCTT+TGG | + | chr5_4:337936-337955 | Msa0828060:intron | 35.0% |
| TGTCAGATATGCTTCAATCA+AGG | + | chr5_4:338061-338080 | Msa0828060:intron | 35.0% | |
| AAGTGGTTGTACTCTACTAA+AGG | - | chr5_4:338654-338673 | None:intergenic | 35.0% | |
| TTTGCAGGTTCAAAATGAAG+TGG | - | chr5_4:338671-338690 | None:intergenic | 35.0% | |
| GTTGCATTAACATGTCTAGT+AGG | + | chr5_4:338789-338808 | Msa0828060:intron | 35.0% | |
| ATGGAACAATTGCAGAACAA+TGG | - | chr5_4:338845-338864 | None:intergenic | 35.0% | |
| CTAATCATAACTGAAGGTCA+TGG | - | chr5_4:338864-338883 | None:intergenic | 35.0% | |
| !! | TTGTACTAGTCTTCTATGGT+TGG | + | chr5_4:338983-339002 | Msa0828060:intron | 35.0% |
| ! | TGGTTGGTTAAGTCCTATAA+TGG | + | chr5_4:338999-339018 | Msa0828060:intron | 35.0% |
| ! | GGTTGGTTAAGTCCTATAAT+GGG | + | chr5_4:339000-339019 | Msa0828060:intron | 35.0% |
| CTCTCAACAAAACCCATTAT+AGG | - | chr5_4:339015-339034 | None:intergenic | 35.0% | |
| GTACTCGAATGAATACCAAT+AGG | + | chr5_4:339066-339085 | Msa0828060:intron | 35.0% | |
| ACTATGGTGAGATCACTATA+AGG | - | chr5_4:339174-339193 | None:intergenic | 35.0% | |
| TCACATAAAGAATCGCACTA+TGG | - | chr5_4:339190-339209 | None:intergenic | 35.0% | |
| TATCCATGTGAACATGGTTT+AGG | - | chr5_4:339283-339302 | None:intergenic | 35.0% | |
| ! | ATGGATTATCCATGTGAACA+TGG | - | chr5_4:339289-339308 | None:intergenic | 35.0% |
| ACTATGTGATCAAGTCATTG+GGG | - | chr5_4:339314-339333 | None:intergenic | 35.0% | |
| ATGGCTAAACCATATGATCA+TGG | - | chr5_4:339483-339502 | None:intergenic | 35.0% | |
| AAAATGTGATCATGGCATTG+AGG | - | chr5_4:339507-339526 | None:intergenic | 35.0% | |
| AAGATCTTGAGTTCGAATCA+TGG | - | chr5_4:339723-339742 | None:intergenic | 35.0% | |
| TAACCATAAACCTGATCACA+TGG | + | chr5_4:339780-339799 | Msa0828060:intron | 35.0% | |
| AACCATAAACCTGATCACAT+GGG | + | chr5_4:339781-339800 | Msa0828060:intron | 35.0% | |
| TGATCAAGGTTTCAAAGTCA+TGG | - | chr5_4:339824-339843 | None:intergenic | 35.0% | |
| !! | ACTTTGAAACCTTGATCACA+TGG | + | chr5_4:339826-339845 | Msa0828060:intron | 35.0% |
| !! | CTTTGAAACCTTGATCACAT+GGG | + | chr5_4:339827-339846 | Msa0828060:intron | 35.0% |
| CGATTATGGAATTAGGTTCA+TGG | - | chr5_4:339857-339876 | None:intergenic | 35.0% | |
| AACAGTGCGATTATGGAATT+AGG | - | chr5_4:339864-339883 | None:intergenic | 35.0% | |
| GCCCTGATATCATAATCAAA+TGG | + | chr5_4:339892-339911 | Msa0828060:intron | 35.0% | |
| !! | CAATTTTCAGGCTTCCAATT+TGG | + | chr5_4:340227-340246 | Msa0828060:intron | 35.0% |
| AACTTTGCATAAGGCCAAAT+TGG | - | chr5_4:340244-340263 | None:intergenic | 35.0% | |
| CTCAGTATCAACTTTGCATA+AGG | - | chr5_4:340253-340272 | None:intergenic | 35.0% | |
| !! | CAAAGTTGATACTGAGTTGT+TGG | + | chr5_4:340257-340276 | Msa0828060:CDS | 35.0% |
| ! | TTGGTTCTTCCTCACTTTAA+TGG | + | chr5_4:340280-340299 | Msa0828060:CDS | 35.0% |
| AATTGTGGGTTCATGTAGAA+TGG | - | chr5_4:340337-340356 | None:intergenic | 35.0% | |
| TTACTGAATATGTTCTTCCG+TGG | - | chr5_4:340406-340425 | None:intergenic | 35.0% | |
| ! | AGTGTGCAAGTTTGTTTGAT+GGG | + | chr5_4:340877-340896 | Msa0828060:three_prime_UTR | 35.0% |
| GCAGCATATCTATGTTAAGT+TGG | - | chr5_4:340924-340943 | None:intergenic | 35.0% | |
| ACTTAACATAGATATGCTGC+AGG | + | chr5_4:340924-340943 | Msa0828060:three_prime_UTR | 35.0% | |
| CTTAACATAGATATGCTGCA+GGG | + | chr5_4:340925-340944 | Msa0828060:three_prime_UTR | 35.0% | |
| ATTGATGTGTAACCATTCTG+TGG | - | chr5_4:341016-341035 | None:intergenic | 35.0% | |
| CTTCTAATCTTCTCATGAGT+TGG | - | chr5_4:341067-341086 | None:intergenic | 35.0% | |
| GGGACTAATGAGAAGAGAAA+AGG | - | chr5_4:337719-337738 | None:intergenic | 40.0% | |
| GGGAAAAAGGGTTTGAAGAT+GGG | - | chr5_4:337739-337758 | None:intergenic | 40.0% | |
| TGGGAAAAAGGGTTTGAAGA+TGG | - | chr5_4:337740-337759 | None:intergenic | 40.0% | |
| GGATAAACAAGGGTTACCAA+AGG | - | chr5_4:337955-337974 | None:intergenic | 40.0% | |
| ACCAACAATGGCTCACTTAT+TGG | + | chr5_4:338110-338129 | Msa0828060:CDS | 40.0% | |
| CCAACAATGGCTCACTTATT+GGG | + | chr5_4:338111-338130 | Msa0828060:CDS | 40.0% | |
| !! | TGACCAAGACAAAAGGCATT+GGG | - | chr5_4:338441-338460 | None:intergenic | 40.0% |
| ! | TTGACCAAGACAAAAGGCAT+TGG | - | chr5_4:338442-338461 | None:intergenic | 40.0% |
| TTATAATAGAGACTGGGCAG+AGG | + | chr5_4:338562-338581 | Msa0828060:intron | 40.0% | |
| ! | GGTTTCTTGCTACTTCTGTT+TGG | - | chr5_4:338723-338742 | None:intergenic | 40.0% |
| !!! | ATGTCTAGTAGGTTTTGGCT+AGG | + | chr5_4:338800-338819 | Msa0828060:intron | 40.0% |
| !!! | TGGGTTTTGTTGAGAGATCA+CGG | + | chr5_4:339019-339038 | Msa0828060:intron | 40.0% |
| ! | GGTAACGTTTTTCTCTTTGG+AGG | - | chr5_4:339102-339121 | None:intergenic | 40.0% |
| !! | TGTGATCTGACTTGTTCCAA+CGG | + | chr5_4:339205-339224 | Msa0828060:intron | 40.0% |
| ATTATGCAATCTTGCTCCGT+TGG | - | chr5_4:339224-339243 | None:intergenic | 40.0% | |
| !!! | ACAGGTTTTGGTTATCCAGA+TGG | - | chr5_4:339361-339380 | None:intergenic | 40.0% |
| ATCTGGATAACCAAAACCTG+TGG | + | chr5_4:339360-339379 | Msa0828060:intron | 40.0% | |
| ATAACCAAAACCTGTGGCTA+TGG | + | chr5_4:339366-339385 | Msa0828060:intron | 40.0% | |
| CGTGAGCAAAAATGTGATCA+TGG | - | chr5_4:339515-339534 | None:intergenic | 40.0% | |
| ! | ACATTTTTGCTCACGTCACT+TGG | + | chr5_4:339520-339539 | Msa0828060:intron | 40.0% |
| ACTTGGTTAATCGATGACTG+TGG | + | chr5_4:339537-339556 | Msa0828060:intron | 40.0% | |
| TTAATCGAAGAATGTGCACC+AGG | + | chr5_4:339618-339637 | Msa0828060:intron | 40.0% | |
| CATAGTAAAGGTCATCAACC+AGG | + | chr5_4:339675-339694 | Msa0828060:intron | 40.0% | |
| ATCAACCAGGTAAGTTACCA+AGG | + | chr5_4:339688-339707 | Msa0828060:intron | 40.0% | |
| ! | AACAACCTTGGTAACTTACC+TGG | - | chr5_4:339696-339715 | None:intergenic | 40.0% |
| AATCATGGTTGGAACAACCT+TGG | - | chr5_4:339708-339727 | None:intergenic | 40.0% | |
| TCTTGAGTTCGAATCATGGT+TGG | - | chr5_4:339719-339738 | None:intergenic | 40.0% | |
| GTTTATGGTTACTAACCAGG+TGG | - | chr5_4:339771-339790 | None:intergenic | 40.0% | |
| CAGGTTTATGGTTACTAACC+AGG | - | chr5_4:339774-339793 | None:intergenic | 40.0% | |
| TACCCATGTGATCAGGTTTA+TGG | - | chr5_4:339786-339805 | None:intergenic | 40.0% | |
| AAGTCATGGATCGTAAGTCA+GGG | - | chr5_4:339810-339829 | None:intergenic | 40.0% | |
| AAAGTCATGGATCGTAAGTC+AGG | - | chr5_4:339811-339830 | None:intergenic | 40.0% | |
| ! | ATGGATTACCCATGTGATCA+AGG | - | chr5_4:339838-339857 | None:intergenic | 40.0% |
| GTGTGTTAACAGTGCGATTA+TGG | - | chr5_4:339871-339890 | None:intergenic | 40.0% | |
| GTTGATACTGAGTTGTTGGT+TGG | + | chr5_4:340261-340280 | Msa0828060:CDS | 40.0% | |
| ! | GAGAGGTACATGCAAGAAAA+TGG | + | chr5_4:340451-340470 | Msa0828060:CDS | 40.0% |
| GTCTGCACATCAACAACAAT+AGG | - | chr5_4:340674-340693 | None:intergenic | 40.0% | |
| ! | CTGACAGAGAATCTAAAGCA+AGG | + | chr5_4:340693-340712 | Msa0828060:CDS | 40.0% |
| ! | ACAGAGAATCTAAAGCAAGG+AGG | + | chr5_4:340696-340715 | Msa0828060:CDS | 40.0% |
| ! | GAATCTAAAGCAAGGAGGAA+TGG | + | chr5_4:340701-340720 | Msa0828060:CDS | 40.0% |
| ! | CAGTGTGCAAGTTTGTTTGA+TGG | + | chr5_4:340876-340895 | Msa0828060:three_prime_UTR | 40.0% |
| ! | TGCAAGTTTGTTTGATGGGT+CGG | + | chr5_4:340881-340900 | Msa0828060:three_prime_UTR | 40.0% |
| TTTCTCAACATGCCACAGAA+TGG | + | chr5_4:341001-341020 | Msa0828060:three_prime_UTR | 40.0% | |
| CCCAATAAGTGAGCCATTGT+TGG | - | chr5_4:338114-338133 | None:intergenic | 45.0% | |
| CTTCTCTTGGTTGAGTTTGC+AGG | - | chr5_4:338686-338705 | None:intergenic | 45.0% | |
| TGGCCTAAACCATGTTCACA+TGG | + | chr5_4:339277-339296 | Msa0828060:intron | 45.0% | |
| TGATCAAGTCATTGGGGTCA+TGG | - | chr5_4:339308-339327 | None:intergenic | 45.0% | |
| TTTGGTTATCCAGATGGTCC+TGG | - | chr5_4:339355-339374 | None:intergenic | 45.0% | |
| AACTATGTGACCATAGCCAC+AGG | - | chr5_4:339379-339398 | None:intergenic | 45.0% | |
| GTGATTGTGACTCGTGTCAT+GGG | - | chr5_4:339439-339458 | None:intergenic | 45.0% | |
| TGTGATTGTGACTCGTGTCA+TGG | - | chr5_4:339440-339459 | None:intergenic | 45.0% | |
| ! | GTGATCATGGCATTGAGGAA+TGG | - | chr5_4:339502-339521 | None:intergenic | 45.0% |
| TTGAGTACGCGTTAGCCAAT+TGG | - | chr5_4:339959-339978 | None:intergenic | 45.0% | |
| ! | TGTGCTGCTCCATTAAAGTG+AGG | - | chr5_4:340292-340311 | None:intergenic | 45.0% |
| GCGGCATTTGTGGTAATTGT+GGG | - | chr5_4:340351-340370 | None:intergenic | 45.0% | |
| AGCGGCATTTGTGGTAATTG+TGG | - | chr5_4:340352-340371 | None:intergenic | 45.0% | |
| TACCACATTTGCGAAGTTCC+TGG | - | chr5_4:340379-340398 | None:intergenic | 45.0% | |
| CGCAAATGTGGTATGTTCCA+CGG | + | chr5_4:340386-340405 | Msa0828060:CDS | 45.0% | |
| ATGTTCTTAGTGCTGCAGAG+AGG | + | chr5_4:340434-340453 | Msa0828060:CDS | 45.0% | |
| !! | TTGCCAGAAGCACCCATGTT+TGG | - | chr5_4:337783-337802 | None:intergenic | 50.0% |
| ! | AGGCCCAATGCCTTTTGTCT+TGG | + | chr5_4:338435-338454 | Msa0828060:intron | 50.0% |
| GGAGGACTTCACTCACCTAT+TGG | - | chr5_4:339084-339103 | None:intergenic | 50.0% | |
| ! | GTGACCATAGCCACAGGTTT+TGG | - | chr5_4:339373-339392 | None:intergenic | 50.0% |
| AATCGATGACTGTGGCACGA+TGG | + | chr5_4:339545-339564 | Msa0828060:intron | 50.0% | |
| AACGGAAGTCATCAACCACC+TGG | + | chr5_4:339753-339772 | Msa0828060:intron | 50.0% | |
| TCAGGGTTACCCATGTGATC+AGG | - | chr5_4:339793-339812 | None:intergenic | 50.0% | |
| TGCGAAGTTCCTGGCATTAG+CGG | - | chr5_4:340370-340389 | None:intergenic | 50.0% | |
| TGCCAGGAACTTCGCAAATG+TGG | + | chr5_4:340374-340393 | Msa0828060:CDS | 50.0% | |
| CTGCCAAACATGGGTGCTTC+TGG | + | chr5_4:337777-337796 | Msa0828060:exon | 55.0% | |
| TAACCCATCACCCAGATGCC+AGG | + | chr5_4:339334-339353 | Msa0828060:intron | 55.0% | |
| TCCAGATGGTCCTGGCATCT+GGG | - | chr5_4:339347-339366 | None:intergenic | 55.0% | |
| ATCCAGATGGTCCTGGCATC+TGG | - | chr5_4:339348-339367 | None:intergenic | 55.0% | |
| CCTGGCATTAGCGGCATTTG+TGG | - | chr5_4:340361-340380 | None:intergenic | 55.0% | |
| CCACAAATGCCGCTAATGCC+AGG | + | chr5_4:340358-340377 | Msa0828060:CDS | 55.0% | |
| AGATATGCTGCAGGGTCTGC+TGG | + | chr5_4:340933-340952 | Msa0828060:three_prime_UTR | 55.0% | |
| GGTCCTGGCATCTGGGTGAT+GGG | - | chr5_4:339340-339359 | None:intergenic | 60.0% | |
| TGGTCCTGGCATCTGGGTGA+TGG | - | chr5_4:339341-339360 | None:intergenic | 60.0% | |
| ACCCAGATGCCAGGACCATC+TGG | + | chr5_4:339343-339362 | Msa0828060:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 337659 | 341100 | 337659 | ID=Msa0828060;Name=Msa0828060 |
| chr5_4 | mRNA | 337659 | 341100 | 337659 | ID=Msa0828060-mRNA-1;Parent=Msa0828060;Name=Msa0828060-mRNA-1;_AED=0.32;_eAED=0.32;_QI=127|0.75|0.8|1|1|1|5|340|175 |
| chr5_4 | exon | 337659 | 337847 | 337659 | ID=Msa0828060-mRNA-1:exon:27;Parent=Msa0828060-mRNA-1 |
| chr5_4 | exon | 337951 | 337957 | 337951 | ID=Msa0828060-mRNA-1:exon:28;Parent=Msa0828060-mRNA-1 |
| chr5_4 | exon | 338067 | 338188 | 338067 | ID=Msa0828060-mRNA-1:exon:29;Parent=Msa0828060-mRNA-1 |
| chr5_4 | exon | 340237 | 340504 | 340237 | ID=Msa0828060-mRNA-1:exon:30;Parent=Msa0828060-mRNA-1 |
| chr5_4 | exon | 340692 | 341100 | 340692 | ID=Msa0828060-mRNA-1:exon:31;Parent=Msa0828060-mRNA-1 |
| chr5_4 | five_prime_UTR | 337659 | 337785 | 337659 | ID=Msa0828060-mRNA-1:five_prime_utr;Parent=Msa0828060-mRNA-1 |
| chr5_4 | CDS | 337786 | 337847 | 337786 | ID=Msa0828060-mRNA-1:cds;Parent=Msa0828060-mRNA-1 |
| chr5_4 | CDS | 337951 | 337957 | 337951 | ID=Msa0828060-mRNA-1:cds;Parent=Msa0828060-mRNA-1 |
| chr5_4 | CDS | 338067 | 338188 | 338067 | ID=Msa0828060-mRNA-1:cds;Parent=Msa0828060-mRNA-1 |
| chr5_4 | CDS | 340237 | 340504 | 340237 | ID=Msa0828060-mRNA-1:cds;Parent=Msa0828060-mRNA-1 |
| chr5_4 | CDS | 340692 | 340760 | 340692 | ID=Msa0828060-mRNA-1:cds;Parent=Msa0828060-mRNA-1 |
| chr5_4 | three_prime_UTR | 340761 | 341100 | 340761 | ID=Msa0828060-mRNA-1:three_prime_utr;Parent=Msa0828060-mRNA-1 |
| Gene Sequence |
| Protein sequence |
