Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0724800 | RHN55325.1 | 98.901 | 182 | 2 | 0 | 1 | 182 | 58 | 239 | 1.08e-130 | 376 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0724800 | sp|Q9S784|HA22C_ARATH | 61.170 | 188 | 59 | 4 | 2 | 182 | 4 | 184 | 1.44e-78 | 234 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0724800 | A0A396HVB1 | 98.901 | 182 | 2 | 0 | 1 | 182 | 58 | 239 | 5.14e-131 | 376 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0025580 | Msa0724800 | 0.807152 | 5.811768e-50 | -8.615850e-47 |
| Msa0027280 | Msa0724800 | 0.813703 | 2.238203e-51 | -8.615850e-47 |
| Msa0048510 | Msa0724800 | 0.804347 | 2.257067e-49 | -8.615850e-47 |
| Msa0050660 | Msa0724800 | 0.805338 | 1.400973e-49 | -8.615850e-47 |
| Msa0050700 | Msa0724800 | 0.804187 | 2.436765e-49 | -8.615850e-47 |
| Msa0067330 | Msa0724800 | 0.815707 | 8.051856e-52 | -8.615850e-47 |
| Msa0666700 | Msa0724800 | 0.800558 | 1.362414e-48 | -8.615850e-47 |
| Msa0724800 | Msa0740710 | 0.807130 | 5.874202e-50 | -8.615850e-47 |
| Msa0724800 | Msa0795870 | 0.806202 | 9.224381e-50 | -8.615850e-47 |
| Msa0724800 | Msa0815920 | 0.814673 | 1.366547e-51 | -8.615850e-47 |
| Msa0724800 | Msa0819170 | 0.802579 | 5.247875e-49 | -8.615850e-47 |
| Msa0724800 | Msa0828060 | 0.914521 | 1.739066e-84 | -8.615850e-47 |
| Msa0724800 | Msa0833650 | 0.802932 | 4.436032e-49 | -8.615850e-47 |
| Msa0724800 | Msa0859290 | 0.809570 | 1.772256e-50 | -8.615850e-47 |
| Msa0724800 | Msa1009950 | 0.821964 | 3.050535e-53 | -8.615850e-47 |
| Msa0724800 | Msa1078880 | 0.810627 | 1.049486e-50 | -8.615850e-47 |
| Msa0724800 | Msa1078970 | 0.824817 | 6.570575e-54 | -8.615850e-47 |
| Msa0724800 | Msa1090140 | 0.801900 | 7.239963e-49 | -8.615850e-47 |
| Msa0724800 | Msa1116660 | 0.807510 | 4.880266e-50 | -8.615850e-47 |
| Msa0724800 | Msa1169190 | 0.802859 | 4.594235e-49 | -8.615850e-47 |
| Msa0724800 | Msa1303650 | 0.803970 | 2.702788e-49 | -8.615850e-47 |
| Msa0724800 | Msa1372040 | 0.802316 | 5.944323e-49 | -8.615850e-47 |
| Msa0724800 | Msa1384460 | 0.805293 | 1.431452e-49 | -8.615850e-47 |
| Msa0724800 | Msa1409410 | 0.812064 | 5.116343e-51 | -8.615850e-47 |
| Msa0724800 | Msa1415540 | 0.813196 | 2.893245e-51 | -8.615850e-47 |
| Msa0121330 | Msa0724800 | 0.829801 | 4.201493e-55 | -8.615850e-47 |
| Msa0149350 | Msa0724800 | 0.813187 | 2.905610e-51 | -8.615850e-47 |
| Msa0188610 | Msa0724800 | 0.801131 | 1.040397e-48 | -8.615850e-47 |
| Msa0200050 | Msa0724800 | 0.805105 | 1.567103e-49 | -8.615850e-47 |
| Msa0369790 | Msa0724800 | 0.842466 | 2.541867e-58 | -8.615850e-47 |
| Msa0435210 | Msa0724800 | 0.808449 | 3.080654e-50 | -8.615850e-47 |
| Msa0464000 | Msa0724800 | 0.842804 | 2.067875e-58 | -8.615850e-47 |
| Msa0509550 | Msa0724800 | 0.831054 | 2.075033e-55 | -8.615850e-47 |
| Msa0528570 | Msa0724800 | 0.821292 | 4.362920e-53 | -8.615850e-47 |
| Msa0548470 | Msa0724800 | 0.801364 | 9.321847e-49 | -8.615850e-47 |
| Msa0557460 | Msa0724800 | 0.808016 | 3.810402e-50 | -8.615850e-47 |
| Msa0580200 | Msa0724800 | 0.810322 | 1.221329e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0724800 | MtrunA17_Chr5g0416561 | 98.901 | 182 | 2 | 0 | 1 | 182 | 58 | 239 | 9.90e-135 | 376 |
| Msa0724800 | MtrunA17_Chr4g0060581 | 61.494 | 174 | 55 | 3 | 8 | 180 | 11 | 173 | 2.95e-75 | 223 |
| Msa0724800 | MtrunA17_Chr3g0097141 | 43.396 | 159 | 85 | 1 | 8 | 166 | 3 | 156 | 7.90e-41 | 135 |
| Msa0724800 | MtrunA17_Chr5g0443431 | 44.172 | 163 | 79 | 2 | 7 | 166 | 2 | 155 | 6.11e-40 | 133 |
| Msa0724800 | MtrunA17_Chr8g0386221 | 47.619 | 105 | 52 | 1 | 9 | 110 | 4 | 108 | 1.63e-29 | 105 |
| Msa0724800 | MtrunA17_Chr3g0132031 | 50.526 | 95 | 47 | 0 | 9 | 103 | 4 | 98 | 1.66e-27 | 101 |
| Msa0724800 | MtrunA17_Chr4g0049651 | 41.429 | 140 | 72 | 3 | 19 | 158 | 17 | 146 | 5.66e-26 | 103 |
| Msa0724800 | MtrunA17_Chr4g0049701 | 38.889 | 144 | 78 | 3 | 19 | 162 | 14 | 147 | 1.48e-25 | 100 |
| Msa0724800 | MtrunA17_Chr4g0049671 | 41.221 | 131 | 67 | 3 | 32 | 162 | 21 | 141 | 1.39e-23 | 97.1 |
| Msa0724800 | MtrunA17_Chr5g0427761 | 30.476 | 105 | 73 | 0 | 1 | 105 | 1 | 105 | 1.56e-13 | 67.8 |
| Msa0724800 | MtrunA17_Chr5g0403731 | 34.066 | 91 | 60 | 0 | 20 | 110 | 32 | 122 | 1.38e-12 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0724800 | AT1G69700.1 | 61.170 | 188 | 59 | 4 | 2 | 182 | 4 | 184 | 1.47e-79 | 234 |
| Msa0724800 | AT1G74520.1 | 55.556 | 171 | 66 | 2 | 1 | 170 | 1 | 162 | 1.01e-68 | 207 |
| Msa0724800 | AT1G74520.2 | 55.556 | 171 | 66 | 2 | 1 | 170 | 1 | 162 | 1.01e-68 | 207 |
| Msa0724800 | AT5G62490.1 | 45.355 | 183 | 83 | 4 | 1 | 182 | 1 | 167 | 7.66e-50 | 159 |
| Msa0724800 | AT2G42820.1 | 38.509 | 161 | 92 | 2 | 7 | 166 | 2 | 156 | 1.80e-36 | 124 |
| Msa0724800 | AT5G50720.1 | 56.471 | 85 | 37 | 0 | 19 | 103 | 14 | 98 | 1.86e-27 | 100 |
| Msa0724800 | AT4G24960.1 | 51.190 | 84 | 41 | 0 | 20 | 103 | 15 | 98 | 2.22e-25 | 95.5 |
| Msa0724800 | AT4G24960.3 | 51.282 | 78 | 38 | 0 | 26 | 103 | 2 | 79 | 1.18e-23 | 91.3 |
| Msa0724800 | AT4G24960.2 | 47.761 | 67 | 35 | 0 | 37 | 103 | 1 | 67 | 9.01e-18 | 75.1 |
| Msa0724800 | AT4G36720.1 | 28.571 | 112 | 79 | 1 | 20 | 130 | 40 | 151 | 4.94e-11 | 59.3 |
Find 50 sgRNAs with CRISPR-Local
Find 211 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCAACAATGGCTCACTTAT+TGG | 0.141168 | 5_1:+23900876 | Msa0724800:CDS |
| AACAATATTCTTGGTTTCTA+TGG | 0.170643 | 5_1:-23900849 | None:intergenic |
| TTGGTTCTTCCTCACTTTAA+TGG | 0.200883 | 5_1:+23903175 | Msa0724800:CDS |
| CTGCCAAACATGGGTGCTTC+TGG | 0.275435 | 5_1:+23900543 | Msa0724800:exon |
| TCACTTTAATAATTCTATAA+TGG | 0.279272 | 5_1:+23903703 | Msa0724800:three_prime_UTR |
| TTTGTTGAAGAGTGGGAAAA+AGG | 0.291665 | 5_1:-23900515 | None:intergenic |
| TTGGTCATCAACAATATTCT+TGG | 0.302983 | 5_1:-23900858 | None:intergenic |
| TTATTAAAGTGACTAAATTA+AGG | 0.315991 | 5_1:-23903692 | None:intergenic |
| GAGAGGTACATGCAAGAAAA+TGG | 0.319550 | 5_1:+23903346 | Msa0724800:CDS |
| CCAACAATGGCTCACTTATT+GGG | 0.324995 | 5_1:+23900877 | Msa0724800:CDS |
| TACCACATTTGCGAAGTTCC+TGG | 0.390647 | 5_1:-23903271 | None:intergenic |
| AACTTACACTTCAAGAACTT+TGG | 0.394572 | 5_1:-23900939 | None:intergenic |
| CAAAGTTGATACTGAGTTGT+TGG | 0.408295 | 5_1:+23903152 | Msa0724800:CDS |
| CTTCTAATCTTCTCATGAGT+TGG | 0.409118 | 5_1:-23903959 | None:intergenic |
| TTGCCAGAAGCACCCATGTT+TGG | 0.413835 | 5_1:-23900546 | None:intergenic |
| GCGGCATTTGTGGTAATTGT+GGG | 0.420764 | 5_1:-23903243 | None:intergenic |
| CCCAATAAGTGAGCCATTGT+TGG | 0.422265 | 5_1:-23900877 | None:intergenic |
| GGGACTAATGAGAAGAGAAA+AGG | 0.425839 | 5_1:-23900482 | None:intergenic |
| AACTTTGCATAAGGCCAAAT+CGG | 0.431332 | 5_1:-23903136 | None:intergenic |
| CCTGGCATTAGCGGCATTTG+TGG | 0.433095 | 5_1:-23903253 | None:intergenic |
| AGCGGCATTTGTGGTAATTG+TGG | 0.440775 | 5_1:-23903244 | None:intergenic |
| AGATATGCTGCAGGGTCTGC+TGG | 0.449211 | 5_1:+23903828 | Msa0724800:three_prime_UTR |
| GGACTAATGAGAAGAGAAAA+GGG | 0.454767 | 5_1:-23900481 | None:intergenic |
| CTCAGTATCAACTTTGCATA+AGG | 0.465176 | 5_1:-23903145 | None:intergenic |
| CAGTGTGCAAGTTTGTTTGA+TGG | 0.482841 | 5_1:+23903771 | Msa0724800:three_prime_UTR |
| GAATCTAAAGCAAGGAGGAA+TGG | 0.484072 | 5_1:+23903596 | Msa0724800:CDS |
| GCAGCATATCTATGTTAAGT+TGG | 0.495163 | 5_1:-23903816 | None:intergenic |
| TGCAAGTTTGTTTGATGGGT+CGG | 0.497811 | 5_1:+23903776 | Msa0724800:three_prime_UTR |
| AAACATCATAACATGTCTCT+TGG | 0.508337 | 5_1:-23903665 | None:intergenic |
| CCACAAATGCCGCTAATGCC+AGG | 0.511549 | 5_1:+23903253 | Msa0724800:CDS |
| TGTCAGATATGCTTCAATCA+AGG | 0.516461 | 5_1:+23900826 | Msa0724800:intron |
| ACTTAACATAGATATGCTGC+AGG | 0.521360 | 5_1:+23903819 | Msa0724800:three_prime_UTR |
| TGCGAAGTTCCTGGCATTAG+CGG | 0.524899 | 5_1:-23903262 | None:intergenic |
| AGTGTGCAAGTTTGTTTGAT+GGG | 0.540699 | 5_1:+23903772 | Msa0724800:three_prime_UTR |
| CGCAAATGTGGTATGTTCCA+CGG | 0.554204 | 5_1:+23903281 | Msa0724800:CDS |
| TGCCAGGAACTTCGCAAATG+TGG | 0.559503 | 5_1:+23903269 | Msa0724800:CDS |
| AATTGTGGGTTCATGTAGAA+TGG | 0.566744 | 5_1:-23903229 | None:intergenic |
| GTTGATACTGAGTTGTTGGT+TGG | 0.567156 | 5_1:+23903156 | Msa0724800:CDS |
| TTACTGAATATGTTCTTCCG+TGG | 0.635410 | 5_1:-23903298 | None:intergenic |
| ATACTTACAAAGGATAAACA+AGG | 0.644880 | 5_1:-23900728 | None:intergenic |
| ATATTGTTGATGACCAACAA+TGG | 0.658273 | 5_1:+23900864 | Msa0724800:CDS |
| GGATAAACAAGGGTTACCAA+AGG | 0.666185 | 5_1:-23900717 | None:intergenic |
| CTGACAGAGAATCTAAAGCA+AGG | 0.668145 | 5_1:+23903588 | Msa0724800:CDS |
| TGTGCTGCTCCATTAAAGTG+AGG | 0.689754 | 5_1:-23903184 | None:intergenic |
| CTTAACATAGATATGCTGCA+GGG | 0.701242 | 5_1:+23903820 | Msa0724800:three_prime_UTR |
| ATTGATGTGTAAGCATTCTG+TGG | 0.706202 | 5_1:-23903908 | None:intergenic |
| TACTTACAAAGGATAAACAA+GGG | 0.713530 | 5_1:-23900727 | None:intergenic |
| ATTTGAAAGACTCATCACAA+AGG | 0.722475 | 5_1:+23903378 | Msa0724800:CDS |
| ATGTTCTTAGTGCTGCAGAG+AGG | 0.731265 | 5_1:+23903329 | Msa0724800:CDS |
| ACAGAGAATCTAAAGCAAGG+AGG | 0.733583 | 5_1:+23903591 | Msa0724800:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATAATGATATTTTTCAAAT+AGG | + | chr5_1:23901182-23901201 | Msa0724800:intron | 10.0% |
| !!! | TTTTTAAAATAGAATTTTCA+AGG | + | chr5_1:23901392-23901411 | Msa0724800:intron | 10.0% |
| !! | ATGAATTAAAAATGTAATAA+TGG | - | chr5_1:23902056-23902075 | None:intergenic | 10.0% |
| !!! | ATTATTACATTTTTAATTCA+TGG | + | chr5_1:23902055-23902074 | Msa0724800:intron | 10.0% |
| !! | AAATTTAGTAATTTAAACTT+CGG | - | chr5_1:23903456-23903475 | None:intergenic | 10.0% |
| !! | AAATTATAACATACTTACAA+AGG | - | chr5_1:23900741-23900760 | None:intergenic | 15.0% |
| !!! | TTAACATAAAGTCTATTTTA+TGG | + | chr5_1:23901054-23901073 | Msa0724800:intron | 15.0% |
| !!! | TAACATAAAGTCTATTTTAT+GGG | + | chr5_1:23901055-23901074 | Msa0724800:intron | 15.0% |
| !!! | ATCAAATGATTTTATGATAT+TGG | - | chr5_1:23901926-23901945 | None:intergenic | 15.0% |
| !!! | TTCAAGAATTTTTTTTTAGT+TGG | + | chr5_1:23902910-23902929 | Msa0724800:intron | 15.0% |
| !!! | TCAAGAATTTTTTTTTAGTT+GGG | + | chr5_1:23902911-23902930 | Msa0724800:intron | 15.0% |
| !! | ATTACTAAATTTGAAAAACT+AGG | + | chr5_1:23903464-23903483 | Msa0724800:intron | 15.0% |
| !! | TTATTAAAGTGACTAAATTA+AGG | - | chr5_1:23903695-23903714 | None:intergenic | 15.0% |
| !! | TCACTTTAATAATTCTATAA+TGG | + | chr5_1:23903703-23903722 | Msa0724800:three_prime_UTR | 15.0% |
| !!! | AAGTTTTTTATGACTAAATC+TGG | + | chr5_1:23900957-23900976 | Msa0724800:intron | 20.0% |
| !!! | TTTTTTCTTATAATAGAGAC+AGG | + | chr5_1:23901322-23901341 | Msa0724800:intron | 20.0% |
| !!! | TTTTTCTTATAATAGAGACA+GGG | + | chr5_1:23901323-23901342 | Msa0724800:intron | 20.0% |
| !! | ACTATTGAATCTACTAATTT+GGG | - | chr5_1:23901543-23901562 | None:intergenic | 20.0% |
| !! | AACTATTGAATCTACTAATT+TGG | - | chr5_1:23901544-23901563 | None:intergenic | 20.0% |
| !!! | AAATGATTTTATGATATTGG+AGG | - | chr5_1:23901923-23901942 | None:intergenic | 20.0% |
| !! | GCAATATGATTATAATATCA+GGG | - | chr5_1:23902785-23902804 | None:intergenic | 20.0% |
| !! | AGCAATATGATTATAATATC+AGG | - | chr5_1:23902786-23902805 | None:intergenic | 20.0% |
| !! | TATGATCACAATTTACTAAT+TGG | + | chr5_1:23902829-23902848 | Msa0724800:intron | 20.0% |
| !!! | CATATCACCTAATTTTTTTT+TGG | + | chr5_1:23903409-23903428 | Msa0724800:intron | 20.0% |
| !!! | CTGTTGTTTTTTTAGAAAAT+TGG | + | chr5_1:23903493-23903512 | Msa0724800:intron | 20.0% |
| !!! | AGAATTTTTTGTTGAAGAGT+GGG | - | chr5_1:23900525-23900544 | None:intergenic | 25.0% |
| ! | GCTATTTAACATAGATACAA+AGG | - | chr5_1:23900628-23900647 | None:intergenic | 25.0% |
| ! | TACTTACAAAGGATAAACAA+GGG | - | chr5_1:23900730-23900749 | None:intergenic | 25.0% |
| ! | ATACTTACAAAGGATAAACA+AGG | - | chr5_1:23900731-23900750 | None:intergenic | 25.0% |
| !!! | GTGAGTTTTTTTTGATCTAT+TGG | + | chr5_1:23900794-23900813 | Msa0724800:intron | 25.0% |
| ! | AACAATATTCTTGGTTTCTA+TGG | - | chr5_1:23900852-23900871 | None:intergenic | 25.0% |
| ! | GGTTTATAGAAAAGTTAGAA+AGG | + | chr5_1:23901076-23901095 | Msa0724800:intron | 25.0% |
| !!! | AATTGCTAATTTTTGGTCAA+CGG | - | chr5_1:23901241-23901260 | None:intergenic | 25.0% |
| !! | CTGAAGTAATTGCTAATTTT+TGG | - | chr5_1:23901248-23901267 | None:intergenic | 25.0% |
| ! | TTATCCTTTAATTCTTCTCT+TGG | - | chr5_1:23901470-23901489 | None:intergenic | 25.0% |
| ! | ACATAATCACTCATTTAAAC+AGG | - | chr5_1:23901515-23901534 | None:intergenic | 25.0% |
| ! | AAGAAATAACATAACTATCC+TGG | - | chr5_1:23901593-23901612 | None:intergenic | 25.0% |
| ! | AAAAAACCAATCATAACTGA+AGG | - | chr5_1:23901641-23901660 | None:intergenic | 25.0% |
| ! | AAATTGTTCACAACAATTGT+GGG | - | chr5_1:23901678-23901697 | None:intergenic | 25.0% |
| ! | TAAATTGTTCACAACAATTG+TGG | - | chr5_1:23901679-23901698 | None:intergenic | 25.0% |
| ! | CATAAACAAGTATTTGTACT+AGG | + | chr5_1:23901749-23901768 | Msa0724800:intron | 25.0% |
| ! | AAGGATAATAGGTACATTAT+GGG | - | chr5_1:23902284-23902303 | None:intergenic | 25.0% |
| ! | TAAGGATAATAGGTACATTA+TGG | - | chr5_1:23902285-23902304 | None:intergenic | 25.0% |
| ! | TTAAGACAAAAACAAAACCA+TGG | - | chr5_1:23902482-23902501 | None:intergenic | 25.0% |
| ! | AACAATGTGATTATGGAATT+GGG | - | chr5_1:23902753-23902772 | None:intergenic | 25.0% |
| ! | TAACAATGTGATTATGGAAT+TGG | - | chr5_1:23902754-23902773 | None:intergenic | 25.0% |
| !! | GTTTGTTAACAATGTGATTA+TGG | - | chr5_1:23902760-23902779 | None:intergenic | 25.0% |
| ! | ATATCATTGCATTCAAATCT+CGG | - | chr5_1:23902812-23902831 | None:intergenic | 25.0% |
| ! | TAATGCATACTCAAATTACA+TGG | + | chr5_1:23902853-23902872 | Msa0724800:intron | 25.0% |
| ! | AATTCTTGAACTATGAAGTA+AGG | - | chr5_1:23902900-23902919 | None:intergenic | 25.0% |
| ! | CTCTTCACCAAAAAAAAATT+AGG | - | chr5_1:23903419-23903438 | None:intergenic | 25.0% |
| !!! | CAGAATTTTTTGTTGAAGAG+TGG | - | chr5_1:23900526-23900545 | None:intergenic | 30.0% |
| ACAAAAAATTCTGCCAAACA+TGG | + | chr5_1:23900533-23900552 | Msa0724800:exon | 30.0% | |
| CAAAAAATTCTGCCAAACAT+GGG | + | chr5_1:23900534-23900553 | Msa0724800:exon | 30.0% | |
| ! | AGCAAGAACATCAAAGTTTT+TGG | - | chr5_1:23900592-23900611 | None:intergenic | 30.0% |
| !!! | TCTTGTGTTTTTTTTTGTGC+AGG | + | chr5_1:23900694-23900713 | Msa0724800:intron | 30.0% |
| TTGGTCATCAACAATATTCT+TGG | - | chr5_1:23900861-23900880 | None:intergenic | 30.0% | |
| !! | ATATTGTTGATGACCAACAA+TGG | + | chr5_1:23900864-23900883 | Msa0724800:CDS | 30.0% |
| AACTTACACTTCAAGAACTT+TGG | - | chr5_1:23900942-23900961 | None:intergenic | 30.0% | |
| !! | TAAGTTTTGACCAAGACAAA+AGG | - | chr5_1:23901215-23901234 | None:intergenic | 30.0% |
| ATGTATCTGATCTATACATC+AGG | - | chr5_1:23901273-23901292 | None:intergenic | 30.0% | |
| TCAACCAAGAGAAGAATTAA+AGG | + | chr5_1:23901463-23901482 | Msa0724800:intron | 30.0% | |
| AACAAGTATTTGTACTAGGT+TGG | + | chr5_1:23901753-23901772 | Msa0724800:intron | 30.0% | |
| ACAAGTATTTGTACTAGGTT+GGG | + | chr5_1:23901754-23901773 | Msa0724800:intron | 30.0% | |
| TCAACAAAAACACCATTGAT+AGG | - | chr5_1:23901800-23901819 | None:intergenic | 30.0% | |
| CAATGGAAATGACTACTTAT+AGG | + | chr5_1:23901828-23901847 | Msa0724800:intron | 30.0% | |
| GTACTTGAATGAATACCAAT+AGG | + | chr5_1:23901861-23901880 | Msa0724800:intron | 30.0% | |
| ! | AAAGGTAACGTTTTTCTCTT+TGG | - | chr5_1:23901899-23901918 | None:intergenic | 30.0% |
| ! | TTTTATGATATTGGAGGCAA+AGG | - | chr5_1:23901917-23901936 | None:intergenic | 30.0% |
| !! | ATATGACTGACTTGTTTCAA+GGG | + | chr5_1:23902003-23902022 | Msa0724800:intron | 30.0% |
| AACTATGTGATCATGAGATT+GGG | - | chr5_1:23902229-23902248 | None:intergenic | 30.0% | |
| AAACTATGTGATCATGAGAT+TGG | - | chr5_1:23902230-23902249 | None:intergenic | 30.0% | |
| GATCATGGTATAAGGATAAT+AGG | - | chr5_1:23902295-23902314 | None:intergenic | 30.0% | |
| ATCCTTATACCATGATCATA+TGG | + | chr5_1:23902298-23902317 | Msa0724800:intron | 30.0% | |
| AACCATATGATCATGGTATA+AGG | - | chr5_1:23902303-23902322 | None:intergenic | 30.0% | |
| ATGACTAAACCATATGATCA+TGG | - | chr5_1:23902310-23902329 | None:intergenic | 30.0% | |
| TATCATTGCATTCAAATCTC+GGG | - | chr5_1:23902811-23902830 | None:intergenic | 30.0% | |
| !!! | AGTTGATAGTTGCAATTTTC+AGG | + | chr5_1:23903110-23903129 | Msa0724800:intron | 30.0% |
| ATTTGAAAGACTCATCACAA+AGG | + | chr5_1:23903378-23903397 | Msa0724800:CDS | 30.0% | |
| AAACATCATAACATGTCTCT+TGG | - | chr5_1:23903668-23903687 | None:intergenic | 30.0% | |
| GGACTAATGAGAAGAGAAAA+GGG | - | chr5_1:23900484-23900503 | None:intergenic | 35.0% | |
| TTGTTGAAGAGTGGGAAAAA+GGG | - | chr5_1:23900517-23900536 | None:intergenic | 35.0% | |
| TTTGTTGAAGAGTGGGAAAA+AGG | - | chr5_1:23900518-23900537 | None:intergenic | 35.0% | |
| !!! | TTTTTTTTTGTGCAGGCCTT+TGG | + | chr5_1:23900701-23900720 | Msa0724800:intron | 35.0% |
| TGTCAGATATGCTTCAATCA+AGG | + | chr5_1:23900826-23900845 | Msa0724800:intron | 35.0% | |
| AAGTGGTTGTACTCTACTAA+AGG | - | chr5_1:23901423-23901442 | None:intergenic | 35.0% | |
| TGCAGGTTCAAAATATGAAG+TGG | - | chr5_1:23901440-23901459 | None:intergenic | 35.0% | |
| GTTGCATTAACATGTCTAGT+AGG | + | chr5_1:23901561-23901580 | Msa0724800:intron | 35.0% | |
| TTAACATGTCTAGTAGGTTG+TGG | + | chr5_1:23901567-23901586 | Msa0724800:intron | 35.0% | |
| TGACTAGTGAGAGAAATTTC+AGG | + | chr5_1:23901713-23901732 | Msa0724800:intron | 35.0% | |
| !! | ATGGTGTTTTTGTTGAGAGA+TGG | + | chr5_1:23901804-23901823 | Msa0724800:intron | 35.0% |
| ! | TTTTGTTGAGAGATGGACAA+TGG | + | chr5_1:23901811-23901830 | Msa0724800:intron | 35.0% |
| GGAAATGACTACTTATAGGT+TGG | + | chr5_1:23901832-23901851 | Msa0724800:intron | 35.0% | |
| ! | ACTACTTATAGGTTGGATTG+AGG | + | chr5_1:23901839-23901858 | Msa0724800:intron | 35.0% |
| ACTATGGTGAGATCACTATA+AGG | - | chr5_1:23901968-23901987 | None:intergenic | 35.0% | |
| TCACATAAAGAATCGCACTA+TGG | - | chr5_1:23901984-23902003 | None:intergenic | 35.0% | |
| !! | GATATGACTGACTTGTTTCA+AGG | + | chr5_1:23902002-23902021 | Msa0724800:intron | 35.0% |
| ! | ATCCATGTGATCATGGTTTT+AGG | - | chr5_1:23902081-23902100 | None:intergenic | 35.0% |
| ! | ATGGATTATCCATGTGATCA+TGG | - | chr5_1:23902088-23902107 | None:intergenic | 35.0% |
| TAACTATGCGATCAAGTCAT+CGG | - | chr5_1:23902115-23902134 | None:intergenic | 35.0% | |
| TCCATATGATCATGGCATAT+GGG | - | chr5_1:23902146-23902165 | None:intergenic | 35.0% | |
| ATCCATATGATCATGGCATA+TGG | - | chr5_1:23902147-23902166 | None:intergenic | 35.0% | |
| TTGGGTTATCCATATGATCA+TGG | - | chr5_1:23902154-23902173 | None:intergenic | 35.0% | |
| ATGATGTGATCATTGCATTG+AGG | - | chr5_1:23902335-23902354 | None:intergenic | 35.0% | |
| TTTCATATGTCACGATCACT+TGG | + | chr5_1:23902355-23902374 | Msa0724800:intron | 35.0% | |
| TTTCATATGTCACGATCACT+TGG | + | chr5_1:23902355-23902374 | Msa0724800:intron | 35.0% | |
| !!! | TTGTTTTTGTCTTAACCCCT+TGG | + | chr5_1:23902487-23902506 | Msa0724800:intron | 35.0% |
| ! | TGATCCTTTTCCATTACCAA+GGG | - | chr5_1:23902506-23902525 | None:intergenic | 35.0% |
| ! | ATGATCCTTTTCCATTACCA+AGG | - | chr5_1:23902507-23902526 | None:intergenic | 35.0% |
| ATCATGGTTGGAACAATTCT+TGG | - | chr5_1:23902570-23902589 | None:intergenic | 35.0% | |
| TTAATCGTTTCGCGTTTAAC+CGG | + | chr5_1:23902606-23902625 | Msa0724800:intron | 35.0% | |
| AAATGTTACCCATGTGATCA+CGG | - | chr5_1:23902665-23902684 | None:intergenic | 35.0% | |
| ! | ATGGATTATCCATGTGATCA+TGG | - | chr5_1:23902088-23902107 | None:intergenic | 35.0% |
| TGATTATGGAATTGGGTTCA+TGG | - | chr5_1:23902746-23902765 | None:intergenic | 35.0% | |
| AAAGCATGCAAATCATGCTA+AGG | - | chr5_1:23902994-23903013 | None:intergenic | 35.0% | |
| AACTTTGCATAAGGCCAAAT+CGG | - | chr5_1:23903139-23903158 | None:intergenic | 35.0% | |
| CTCAGTATCAACTTTGCATA+AGG | - | chr5_1:23903148-23903167 | None:intergenic | 35.0% | |
| !! | CAAAGTTGATACTGAGTTGT+TGG | + | chr5_1:23903152-23903171 | Msa0724800:CDS | 35.0% |
| ! | TTGGTTCTTCCTCACTTTAA+TGG | + | chr5_1:23903175-23903194 | Msa0724800:CDS | 35.0% |
| AATTGTGGGTTCATGTAGAA+TGG | - | chr5_1:23903232-23903251 | None:intergenic | 35.0% | |
| TTACTGAATATGTTCTTCCG+TGG | - | chr5_1:23903301-23903320 | None:intergenic | 35.0% | |
| ! | AGTGTGCAAGTTTGTTTGAT+GGG | + | chr5_1:23903772-23903791 | Msa0724800:three_prime_UTR | 35.0% |
| GCAGCATATCTATGTTAAGT+TGG | - | chr5_1:23903819-23903838 | None:intergenic | 35.0% | |
| ACTTAACATAGATATGCTGC+AGG | + | chr5_1:23903819-23903838 | Msa0724800:three_prime_UTR | 35.0% | |
| CTTAACATAGATATGCTGCA+GGG | + | chr5_1:23903820-23903839 | Msa0724800:three_prime_UTR | 35.0% | |
| ATTGATGTGTAAGCATTCTG+TGG | - | chr5_1:23903911-23903930 | None:intergenic | 35.0% | |
| CTTCTAATCTTCTCATGAGT+TGG | - | chr5_1:23903962-23903981 | None:intergenic | 35.0% | |
| GGGACTAATGAGAAGAGAAA+AGG | - | chr5_1:23900485-23900504 | None:intergenic | 40.0% | |
| GGGAAAAAGGGTTTGAAGAT+GGG | - | chr5_1:23900505-23900524 | None:intergenic | 40.0% | |
| TGGGAAAAAGGGTTTGAAGA+TGG | - | chr5_1:23900506-23900525 | None:intergenic | 40.0% | |
| GGATAAACAAGGGTTACCAA+AGG | - | chr5_1:23900720-23900739 | None:intergenic | 40.0% | |
| ACCAACAATGGCTCACTTAT+TGG | + | chr5_1:23900876-23900895 | Msa0724800:CDS | 40.0% | |
| CCAACAATGGCTCACTTATT+GGG | + | chr5_1:23900877-23900896 | Msa0724800:CDS | 40.0% | |
| !! | TGACCAAGACAAAAGGCATT+GGG | - | chr5_1:23901208-23901227 | None:intergenic | 40.0% |
| ! | TTGACCAAGACAAAAGGCAT+TGG | - | chr5_1:23901209-23901228 | None:intergenic | 40.0% |
| TTATAATAGAGACAGGGCAG+AGG | + | chr5_1:23901329-23901348 | Msa0724800:intron | 40.0% | |
| ! | GGTTTCTTGCTACTTCTGTT+TGG | - | chr5_1:23901494-23901513 | None:intergenic | 40.0% |
| TGATAGGACTTAACCCCATT+AGG | - | chr5_1:23901784-23901803 | None:intergenic | 40.0% | |
| ATGGGGTTAAGTCCTATCAA+TGG | + | chr5_1:23901785-23901804 | Msa0724800:intron | 40.0% | |
| ! | GGTAACGTTTTTCTCTTTGG+AGG | - | chr5_1:23901896-23901915 | None:intergenic | 40.0% |
| AACTATGCGATCAAGTCATC+GGG | - | chr5_1:23902114-23902133 | None:intergenic | 40.0% | |
| ACCCATATGCCATGATCATA+TGG | + | chr5_1:23902142-23902161 | Msa0724800:intron | 40.0% | |
| ACATTATGGGATTGTGACCT+CGG | - | chr5_1:23902271-23902290 | None:intergenic | 40.0% | |
| ACTTGGTTAATCGATGACTG+TGG | + | chr5_1:23902372-23902391 | Msa0724800:intron | 40.0% | |
| ACTTGGTTAATCGATGACTG+TGG | + | chr5_1:23902372-23902391 | Msa0724800:intron | 40.0% | |
| TTGTCTTAACCCCTTGGTAA+TGG | + | chr5_1:23902493-23902512 | Msa0724800:intron | 40.0% | |
| !! | TAACCCCTTGGTAATGGAAA+AGG | + | chr5_1:23902499-23902518 | Msa0724800:intron | 40.0% |
| ! | GATCCTTTTCCATTACCAAG+GGG | - | chr5_1:23902505-23902524 | None:intergenic | 40.0% |
| AATCCAGAGTTCGATTCAGA+TGG | + | chr5_1:23902530-23902549 | Msa0724800:intron | 40.0% | |
| TCTTGAGTTCGAATCATGGT+TGG | - | chr5_1:23902582-23902601 | None:intergenic | 40.0% | |
| GAGTTCTTGAGTTCGAATCA+TGG | - | chr5_1:23902586-23902605 | None:intergenic | 40.0% | |
| TGTTATGGTTACTAACCAGG+TGG | - | chr5_1:23902642-23902661 | None:intergenic | 40.0% | |
| ATGTGATCATGGTATCGCAA+GGG | - | chr5_1:23902716-23902735 | None:intergenic | 40.0% | |
| !! | CAATTTTCAGGCTTCCGATT+TGG | + | chr5_1:23903122-23903141 | Msa0724800:intron | 40.0% |
| GTTGATACTGAGTTGTTGGT+TGG | + | chr5_1:23903156-23903175 | Msa0724800:CDS | 40.0% | |
| ! | GAGAGGTACATGCAAGAAAA+TGG | + | chr5_1:23903346-23903365 | Msa0724800:CDS | 40.0% |
| GTCTGCACATCAACAACAAT+AGG | - | chr5_1:23903569-23903588 | None:intergenic | 40.0% | |
| ! | CTGACAGAGAATCTAAAGCA+AGG | + | chr5_1:23903588-23903607 | Msa0724800:CDS | 40.0% |
| ! | ACAGAGAATCTAAAGCAAGG+AGG | + | chr5_1:23903591-23903610 | Msa0724800:CDS | 40.0% |
| ! | GAATCTAAAGCAAGGAGGAA+TGG | + | chr5_1:23903596-23903615 | Msa0724800:CDS | 40.0% |
| ! | CAGTGTGCAAGTTTGTTTGA+TGG | + | chr5_1:23903771-23903790 | Msa0724800:three_prime_UTR | 40.0% |
| ! | TGCAAGTTTGTTTGATGGGT+CGG | + | chr5_1:23903776-23903795 | Msa0724800:three_prime_UTR | 40.0% |
| CCCAATAAGTGAGCCATTGT+TGG | - | chr5_1:23900880-23900899 | None:intergenic | 45.0% | |
| CTTCTCTTGGTTGAGTTTGC+AGG | - | chr5_1:23901457-23901476 | None:intergenic | 45.0% | |
| CCAATCATAACTGAAGGTCG+TGG | - | chr5_1:23901635-23901654 | None:intergenic | 45.0% | |
| CCACGACCTTCAGTTATGAT+TGG | + | chr5_1:23901632-23901651 | Msa0724800:intron | 45.0% | |
| ! | ACTAGGTTGGGCTTTCCTAA+TGG | + | chr5_1:23901766-23901785 | Msa0724800:intron | 45.0% |
| ! | CTAGGTTGGGCTTTCCTAAT+GGG | + | chr5_1:23901767-23901786 | Msa0724800:intron | 45.0% |
| ! | TAGGTTGGGCTTTCCTAATG+GGG | + | chr5_1:23901768-23901787 | Msa0724800:intron | 45.0% |
| GGCCTAAAACCATGATCACA+TGG | + | chr5_1:23902076-23902095 | Msa0724800:intron | 45.0% | |
| GATCATGGCATATGGGTGAT+GGG | - | chr5_1:23902139-23902158 | None:intergenic | 45.0% | |
| TGATCATGGCATATGGGTGA+TGG | - | chr5_1:23902140-23902159 | None:intergenic | 45.0% | |
| TATGGATAACCCAAACCTCG+TGG | + | chr5_1:23902160-23902179 | Msa0724800:intron | 45.0% | |
| GTGATCATGAGATTGGGTCA+TGG | - | chr5_1:23902223-23902242 | None:intergenic | 45.0% | |
| CATTATGGGATTGTGACCTC+GGG | - | chr5_1:23902270-23902289 | None:intergenic | 45.0% | |
| !! | CGGTGTTATGGTTACTAACC+AGG | - | chr5_1:23902645-23902664 | None:intergenic | 45.0% |
| ACCATAACACCGTGATCACA+TGG | + | chr5_1:23902653-23902672 | Msa0724800:intron | 45.0% | |
| CCATAACACCGTGATCACAT+GGG | + | chr5_1:23902654-23902673 | Msa0724800:intron | 45.0% | |
| CATGTGATCATGGTATCGCA+AGG | - | chr5_1:23902717-23902736 | None:intergenic | 45.0% | |
| CTTGCGATACCATGATCACA+TGG | + | chr5_1:23902715-23902734 | Msa0724800:intron | 45.0% | |
| ! | TGTGCTGCTCCATTAAAGTG+AGG | - | chr5_1:23903187-23903206 | None:intergenic | 45.0% |
| GCGGCATTTGTGGTAATTGT+GGG | - | chr5_1:23903246-23903265 | None:intergenic | 45.0% | |
| AGCGGCATTTGTGGTAATTG+TGG | - | chr5_1:23903247-23903266 | None:intergenic | 45.0% | |
| TACCACATTTGCGAAGTTCC+TGG | - | chr5_1:23903274-23903293 | None:intergenic | 45.0% | |
| CGCAAATGTGGTATGTTCCA+CGG | + | chr5_1:23903281-23903300 | Msa0724800:CDS | 45.0% | |
| ATGTTCTTAGTGCTGCAGAG+AGG | + | chr5_1:23903329-23903348 | Msa0724800:CDS | 45.0% | |
| !! | TTGCCAGAAGCACCCATGTT+TGG | - | chr5_1:23900549-23900568 | None:intergenic | 50.0% |
| ! | AGGCCCAATGCCTTTTGTCT+TGG | + | chr5_1:23901202-23901221 | Msa0724800:intron | 50.0% |
| ATGTCTAGTAGGTTGTGGCC+AGG | + | chr5_1:23901572-23901591 | Msa0724800:intron | 50.0% | |
| TGGAGGCTTCACTCACCTAT+TGG | - | chr5_1:23901879-23901898 | None:intergenic | 50.0% | |
| CGATCAAGTCATCGGGATCA+TGG | - | chr5_1:23902107-23902126 | None:intergenic | 50.0% | |
| TAACCCAAACCTCGTGGCTA+TGG | + | chr5_1:23902166-23902185 | Msa0724800:intron | 50.0% | |
| TGACCATAGCCACGAGGTTT+GGG | - | chr5_1:23902172-23902191 | None:intergenic | 50.0% | |
| TTGATGTGACCATAGCCACG+AGG | - | chr5_1:23902178-23902197 | None:intergenic | 50.0% | |
| TATAGTTCACCCATGACCCG+AGG | + | chr5_1:23902251-23902270 | Msa0724800:intron | 50.0% | |
| AATCGATGACTGTGGCACGA+TGG | + | chr5_1:23902380-23902399 | Msa0724800:intron | 50.0% | |
| AATCGATGACTGTGGCACCA+TGG | + | chr5_1:23902462-23902481 | Msa0724800:intron | 50.0% | |
| CTGCCATCTGAATCGAACTC+TGG | - | chr5_1:23902536-23902555 | None:intergenic | 50.0% | |
| CAGAGTTCGATTCAGATGGC+AGG | + | chr5_1:23902534-23902553 | Msa0724800:intron | 50.0% | |
| !! | ACCAGGTGGTTGATGACTTC+CGG | - | chr5_1:23902628-23902647 | None:intergenic | 50.0% |
| ! | CCCATGTGATCACGGTGTTA+TGG | - | chr5_1:23902657-23902676 | None:intergenic | 50.0% |
| TGCGAAGTTCCTGGCATTAG+CGG | - | chr5_1:23903265-23903284 | None:intergenic | 50.0% | |
| TGCCAGGAACTTCGCAAATG+TGG | + | chr5_1:23903269-23903288 | Msa0724800:CDS | 50.0% | |
| CTGCCAAACATGGGTGCTTC+TGG | + | chr5_1:23900543-23900562 | Msa0724800:exon | 55.0% | |
| GTGACCATAGCCACGAGGTT+TGG | - | chr5_1:23902173-23902192 | None:intergenic | 55.0% | |
| GGATTGTGACCTCGGGTCAT+GGG | - | chr5_1:23902263-23902282 | None:intergenic | 55.0% | |
| ACCGGAAGTCATCAACCACC+TGG | + | chr5_1:23902624-23902643 | Msa0724800:intron | 55.0% | |
| CCTGGCATTAGCGGCATTTG+TGG | - | chr5_1:23903256-23903275 | None:intergenic | 55.0% | |
| CCACAAATGCCGCTAATGCC+AGG | + | chr5_1:23903253-23903272 | Msa0724800:CDS | 55.0% | |
| AGATATGCTGCAGGGTCTGC+TGG | + | chr5_1:23903828-23903847 | Msa0724800:three_prime_UTR | 55.0% | |
| GGGATTGTGACCTCGGGTCA+TGG | - | chr5_1:23902264-23902283 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 23900425 | 23903995 | 23900425 | ID=Msa0724800;Name=Msa0724800 |
| chr5_1 | mRNA | 23900425 | 23903995 | 23900425 | ID=Msa0724800-mRNA-1;Parent=Msa0724800;Name=Msa0724800-mRNA-1;_AED=0.39;_eAED=0.39;_QI=127|1|1|1|1|1|5|340|182 |
| chr5_1 | exon | 23900425 | 23900613 | 23900425 | ID=Msa0724800-mRNA-1:exon:8821;Parent=Msa0724800-mRNA-1 |
| chr5_1 | exon | 23900716 | 23900742 | 23900716 | ID=Msa0724800-mRNA-1:exon:8822;Parent=Msa0724800-mRNA-1 |
| chr5_1 | exon | 23900832 | 23900954 | 23900832 | ID=Msa0724800-mRNA-1:exon:8823;Parent=Msa0724800-mRNA-1 |
| chr5_1 | exon | 23903132 | 23903399 | 23903132 | ID=Msa0724800-mRNA-1:exon:8824;Parent=Msa0724800-mRNA-1 |
| chr5_1 | exon | 23903587 | 23903995 | 23903587 | ID=Msa0724800-mRNA-1:exon:8825;Parent=Msa0724800-mRNA-1 |
| chr5_1 | five_prime_UTR | 23900425 | 23900551 | 23900425 | ID=Msa0724800-mRNA-1:five_prime_utr;Parent=Msa0724800-mRNA-1 |
| chr5_1 | CDS | 23900552 | 23900613 | 23900552 | ID=Msa0724800-mRNA-1:cds;Parent=Msa0724800-mRNA-1 |
| chr5_1 | CDS | 23900716 | 23900742 | 23900716 | ID=Msa0724800-mRNA-1:cds;Parent=Msa0724800-mRNA-1 |
| chr5_1 | CDS | 23900832 | 23900954 | 23900832 | ID=Msa0724800-mRNA-1:cds;Parent=Msa0724800-mRNA-1 |
| chr5_1 | CDS | 23903132 | 23903399 | 23903132 | ID=Msa0724800-mRNA-1:cds;Parent=Msa0724800-mRNA-1 |
| chr5_1 | CDS | 23903587 | 23903655 | 23903587 | ID=Msa0724800-mRNA-1:cds;Parent=Msa0724800-mRNA-1 |
| chr5_1 | three_prime_UTR | 23903656 | 23903995 | 23903656 | ID=Msa0724800-mRNA-1:three_prime_utr;Parent=Msa0724800-mRNA-1 |
| Gene Sequence |
| Protein sequence |
