Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0828990 | XP_027191381.1 | 55.098 | 461 | 122 | 8 | 1 | 377 | 1 | 460 | 2.54e-146 | 432 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0828990 | sp|Q8RXJ0|NUF2_ARATH | 35.402 | 435 | 197 | 8 | 1 | 353 | 1 | 433 | 2.54e-66 | 219 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0828990 | A0A3Q7Y1L8 | 55.098 | 461 | 122 | 8 | 1 | 377 | 1 | 460 | 1.21e-146 | 432 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0657680 | Msa0828990 | 0.863443 | 2.480039e-64 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0828990 | MtrunA17_Chr8g0380721 | 53.611 | 457 | 128 | 7 | 1 | 373 | 3 | 459 | 9.01e-149 | 428 |
| Msa0828990 | MtrunA17_Chr8g0380701 | 80.000 | 260 | 33 | 2 | 31 | 271 | 8 | 267 | 5.39e-143 | 407 |
| Msa0828990 | MtrunA17_Chr4g0025021 | 65.354 | 127 | 40 | 2 | 1 | 124 | 1 | 126 | 4.66e-51 | 167 |
| Msa0828990 | MtrunA17_Chr4g0025011 | 74.074 | 108 | 28 | 0 | 124 | 231 | 44 | 151 | 2.48e-45 | 153 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0828990 | AT1G61000.1 | 35.402 | 435 | 197 | 8 | 1 | 353 | 1 | 433 | 2.59e-67 | 219 |
Find 97 sgRNAs with CRISPR-Local
Find 298 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGACATCTGTTTGTTGTTC+AGG | 0.210075 | 5_4:-1950256 | None:intergenic |
| TTTAGGAATTGAACTATTTC+CGG | 0.233150 | 5_4:-1949316 | None:intergenic |
| CCACAAATGTTCGATTATTC+CGG | 0.257411 | 5_4:-1949170 | None:intergenic |
| TCCCTCCTCAGTTGAGCTTA+TGG | 0.258527 | 5_4:+1952776 | Msa0828990:intron |
| GTCAAATCCAGCTACTTTAA+TGG | 0.261659 | 5_4:-1953748 | None:intergenic |
| AAACTTTACACGTGTGTCTT+AGG | 0.283307 | 5_4:-1953874 | None:intergenic |
| CTACGATTTCTACCGGAGTT+TGG | 0.305203 | 5_4:-1953831 | None:intergenic |
| AGTAGCTGGATTTGACAATA+TGG | 0.313329 | 5_4:+1953755 | Msa0828990:CDS |
| ATATGGATTCCATTTAACTA+TGG | 0.327768 | 5_4:+1953772 | Msa0828990:exon |
| TTCTCAACTTCATATTTCAT+AGG | 0.333718 | 5_4:+1953962 | Msa0828990:three_prime_UTR |
| AAGCTTAGTCCATAGTTAAA+TGG | 0.349716 | 5_4:-1953781 | None:intergenic |
| TTGTTGTAAAGCTTGATAAC+AGG | 0.354857 | 5_4:-1949608 | None:intergenic |
| TGGCAATTTGAAAGTCGTTT+AGG | 0.365645 | 5_4:-1949333 | None:intergenic |
| AACTCGGTTCGACGAGGATC+AGG | 0.373508 | 5_4:-1949701 | None:intergenic |
| ATTTCCGGCCGCCGTAGCCT+TGG | 0.374553 | 5_4:-1949301 | None:intergenic |
| CACAAATGTTCGATTATTCC+GGG | 0.387009 | 5_4:-1949169 | None:intergenic |
| CCACCCAAGGCTACGGCGGC+CGG | 0.400113 | 5_4:+1949297 | Msa0828990:CDS |
| TTTCCGGCCGCCGTAGCCTT+GGG | 0.425723 | 5_4:-1949300 | None:intergenic |
| GTCGCGGTTCGACATTTCTT+CGG | 0.430403 | 5_4:-1949275 | None:intergenic |
| AACATGTCAGTCGGTGGTTG+TGG | 0.434349 | 5_4:+1953929 | Msa0828990:three_prime_UTR |
| ACCGATCCAACGTGAAGATC+AGG | 0.435005 | 5_4:-1949584 | None:intergenic |
| CAGGATTCTCAAGATGCTCT+AGG | 0.447236 | 5_4:-1949565 | None:intergenic |
| AAGAGAGATGCCTTATGTTC+AGG | 0.450527 | 5_4:+1950190 | Msa0828990:CDS |
| AATCCTATCCTCTTCGATCT+TGG | 0.453367 | 5_4:-1950029 | None:intergenic |
| GAAATATTCATTCAATTTCG+CGG | 0.454407 | 5_4:+1949667 | Msa0828990:CDS |
| AACTGTGGAAATGGATGATA+AGG | 0.455579 | 5_4:+1950310 | Msa0828990:CDS |
| GACATTTCCAACCCTAAAAC+CGG | 0.461248 | 5_4:+1949370 | Msa0828990:CDS |
| TCTCAACTTCATATTTCATA+GGG | 0.467385 | 5_4:+1953963 | Msa0828990:three_prime_UTR |
| CCGGAATAATCGAACATTTG+TGG | 0.469962 | 5_4:+1949170 | Msa0828990:five_prime_UTR |
| GAAGGAGAAAACTGTGGAAA+TGG | 0.471678 | 5_4:+1950301 | Msa0828990:CDS |
| CTGTGTGATGCCGATTGAAA+TGG | 0.475165 | 5_4:-1949239 | None:intergenic |
| GCATCCACCTCCTGAACATA+AGG | 0.477376 | 5_4:-1950200 | None:intergenic |
| TATTGAAGAAATCAACACTT+TGG | 0.480199 | 5_4:+1949994 | Msa0828990:intron |
| CAAGCTTTACAACAAGATCA+AGG | 0.491392 | 5_4:+1949616 | Msa0828990:CDS |
| GTTACTCACACCATTTCAAT+CGG | 0.498884 | 5_4:+1949229 | Msa0828990:five_prime_UTR |
| GACTGATTTGAAGAAGTTGA+AGG | 0.499065 | 5_4:+1950283 | Msa0828990:CDS |
| AGTGCGACCATTAAAGTAGC+TGG | 0.502330 | 5_4:+1953741 | Msa0828990:CDS |
| GCTGTGACATTGAAATAAGA+AGG | 0.503399 | 5_4:+1952895 | Msa0828990:CDS |
| CGAAGAGGATAGGATTATGC+AGG | 0.510366 | 5_4:+1950036 | Msa0828990:CDS |
| ATTGCACATGCGATTGAAAG+TGG | 0.511159 | 5_4:+1953711 | Msa0828990:CDS |
| TACACGTGTGTCTTAGGCTA+AGG | 0.512094 | 5_4:-1953868 | None:intergenic |
| TAAACGCCACCGTGCATCAC+GGG | 0.517393 | 5_4:+1949207 | Msa0828990:five_prime_UTR |
| ACCGCGACCACCCAAGGCTA+CGG | 0.522586 | 5_4:+1949290 | Msa0828990:CDS |
| GCCGTAGCCTTGGGTGGTCG+CGG | 0.528593 | 5_4:-1949291 | None:intergenic |
| ACAGCTCTTTGATTCCATCT+CGG | 0.529333 | 5_4:-1952877 | None:intergenic |
| TGCACGGTGGCGTTTACAGC+GGG | 0.531326 | 5_4:-1949200 | None:intergenic |
| GGAAGGGATGAAGAAGCAGT+TGG | 0.531481 | 5_4:+1952797 | Msa0828990:CDS |
| TGAGGATGTGAGTGTAAAGA+TGG | 0.535763 | 5_4:-1949402 | None:intergenic |
| TGTTCAGGAGGTGGATGCAC+AGG | 0.546856 | 5_4:+1950205 | Msa0828990:CDS |
| TCCTGATCTTCACGTTGGAT+CGG | 0.546920 | 5_4:+1949583 | Msa0828990:CDS |
| GATGATAACGTGCTCAACAT+TGG | 0.552257 | 5_4:-1953809 | None:intergenic |
| AATGTCGTTCTCTGTAACGG+TGG | 0.556631 | 5_4:-1949353 | None:intergenic |
| ACTTTCAATCGCATGTGCAA+TGG | 0.558375 | 5_4:-1953709 | None:intergenic |
| TCCTCAGTTGAGCTTATGGA+AGG | 0.559022 | 5_4:+1952780 | Msa0828990:intron |
| GAGCCAAGATCGAAGAGGAT+AGG | 0.559410 | 5_4:+1950026 | Msa0828990:CDS |
| GGTAAATAGTAGAATTACCT+TGG | 0.560260 | 5_4:+1953253 | Msa0828990:CDS |
| GGAAATGTCGTTCTCTGTAA+CGG | 0.561809 | 5_4:-1949356 | None:intergenic |
| TGAAGAATGCAAAGAAGCAA+GGG | 0.568057 | 5_4:+1950166 | Msa0828990:CDS |
| TGTTATGTTATAGTTGACGT+TGG | 0.570121 | 5_4:+1950139 | Msa0828990:intron |
| TGTCGAACCGCGACCACCCA+AGG | 0.574682 | 5_4:+1949284 | Msa0828990:CDS |
| GATGCCTTATGTTCAGGAGG+TGG | 0.577640 | 5_4:+1950196 | Msa0828990:CDS |
| ATTCGCACTACGATTTCTAC+CGG | 0.579364 | 5_4:-1953838 | None:intergenic |
| AGGATTCTCAAGATGCTCTA+GGG | 0.582230 | 5_4:-1949564 | None:intergenic |
| GAGAATCCTGATCTTCACGT+TGG | 0.583311 | 5_4:+1949578 | Msa0828990:CDS |
| TTGAAGAATGCAAAGAAGCA+AGG | 0.585930 | 5_4:+1950165 | Msa0828990:CDS |
| TTTGAAAGTAGAAAATATCC+CGG | 0.591716 | 5_4:+1949151 | Msa0828990:five_prime_UTR |
| AAAGAAATTAGCTCAAGAGA+AGG | 0.593070 | 5_4:+1951444 | Msa0828990:CDS |
| ATAACGTGCTCAACATTGGA+TGG | 0.593412 | 5_4:-1953805 | None:intergenic |
| TCATATTTCATAGGGAAACA+AGG | 0.595680 | 5_4:+1953971 | Msa0828990:three_prime_UTR |
| TTACAATTGACAGGTGGATG+CGG | 0.596345 | 5_4:+1953232 | Msa0828990:intron |
| GTAAACGCCACCGTGCATCA+CGG | 0.602884 | 5_4:+1949206 | Msa0828990:five_prime_UTR |
| GTAAAGATGGAAAACGACGC+CGG | 0.603830 | 5_4:-1949389 | None:intergenic |
| CCGGCCGCCGTAGCCTTGGG+TGG | 0.607394 | 5_4:-1949297 | None:intergenic |
| GAAAAGATAGTTACTCGGGG+AGG | 0.608338 | 5_4:-1949432 | None:intergenic |
| TGTTGAGGCTGAGTATTCAA+AGG | 0.614515 | 5_4:+1952923 | Msa0828990:CDS |
| TCAGTCGCCTGATAAAGTAC+AGG | 0.621157 | 5_4:+1950795 | Msa0828990:CDS |
| TGTTGTAAAGCTTGATAACA+GGG | 0.622146 | 5_4:-1949607 | None:intergenic |
| GAAGTTGAAGGAGAAAACTG+TGG | 0.622296 | 5_4:+1950295 | Msa0828990:CDS |
| GCGACCACCCAAGGCTACGG+CGG | 0.623441 | 5_4:+1949293 | Msa0828990:CDS |
| AAATTGAATGAATATTTCTG+AGG | 0.626572 | 5_4:-1949662 | None:intergenic |
| ACAACAAACAGATGTCATTG+AGG | 0.632333 | 5_4:+1950261 | Msa0828990:CDS |
| CGAGAGAGCCAAGATCGAAG+AGG | 0.637014 | 5_4:+1950021 | Msa0828990:CDS |
| CCTCAGTTGAGCTTATGGAA+GGG | 0.637886 | 5_4:+1952781 | Msa0828990:intron |
| TTGCACATGCGATTGAAAGT+GGG | 0.640805 | 5_4:+1953712 | Msa0828990:CDS |
| AGAAGGCAAGAAACGCTGAA+AGG | 0.647873 | 5_4:+1951461 | Msa0828990:CDS |
| TGCACATCTAACAAACATGA+CGG | 0.649069 | 5_4:-1953903 | None:intergenic |
| GCACGTTATCATCCAAACTC+CGG | 0.660219 | 5_4:+1953819 | Msa0828990:three_prime_UTR |
| AGAGATGCCTTATGTTCAGG+AGG | 0.660324 | 5_4:+1950193 | Msa0828990:CDS |
| ACTCGGGGAGGAGATAGTTG+AGG | 0.661042 | 5_4:-1949420 | None:intergenic |
| TGTGAGTAACCCGTGATGCA+CGG | 0.663073 | 5_4:-1949216 | None:intergenic |
| TGTGCACTTAACATGTCAGT+CGG | 0.663538 | 5_4:+1953920 | Msa0828990:three_prime_UTR |
| AATAAGAAGGAGACATGTTG+AGG | 0.665309 | 5_4:+1952908 | Msa0828990:CDS |
| ATGCACGGTGGCGTTTACAG+CGG | 0.684810 | 5_4:-1949201 | None:intergenic |
| GAAGAATGCAAAGAAGCAAG+GGG | 0.687158 | 5_4:+1950167 | Msa0828990:CDS |
| AGAAACTGAGAAGAGCGCCG+AGG | 0.742803 | 5_4:-1949727 | None:intergenic |
| GCACTTAACATGTCAGTCGG+TGG | 0.744445 | 5_4:+1953923 | Msa0828990:three_prime_UTR |
| GAGTAACCCGTGATGCACGG+TGG | 0.770874 | 5_4:-1949213 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CATCTTATTTATTTATATAA+AGG | - | chr5_4:1951675-1951694 | None:intergenic | 10.0% |
| !!! | ATTTTCAACATTATTTATAT+TGG | + | chr5_4:1951858-1951877 | Msa0828990:CDS | 10.0% |
| !!! | AAAAACTTTTTTTGTTTTTT+TGG | + | chr5_4:1952188-1952207 | Msa0828990:intron | 10.0% |
| !!! | AGTAATTGTAAATAATTTTT+AGG | + | chr5_4:1954019-1954038 | Msa0828990:three_prime_UTR | 10.0% |
| !! | ATATTAAAAAACTGACAATT+AGG | - | chr5_4:1949941-1949960 | None:intergenic | 15.0% |
| !! | TAACATGGAAAAAAAAATAA+TGG | - | chr5_4:1950863-1950882 | None:intergenic | 15.0% |
| !! | ATGATATCATATATGAAAAA+TGG | + | chr5_4:1951166-1951185 | Msa0828990:intron | 15.0% |
| !! | TAAGGAAATCAAATTTAAAT+AGG | - | chr5_4:1951398-1951417 | None:intergenic | 15.0% |
| !!! | TTTTACTTTTTCTGTTTTTT+TGG | + | chr5_4:1953504-1953523 | Msa0828990:intron | 15.0% |
| !!! | AAATTGAATGAATATTTCTG+AGG | - | chr5_4:1949665-1949684 | None:intergenic | 20.0% |
| !! | AGTTATTCAATGAATTGAAA+AGG | + | chr5_4:1949835-1949854 | Msa0828990:intron | 20.0% |
| !!! | TTTTTTTTTTTCCTCTCTTT+TGG | - | chr5_4:1949905-1949924 | None:intergenic | 20.0% |
| !!! | ATTGTCAGTTTTTTAATATC+AGG | + | chr5_4:1949942-1949961 | Msa0828990:intron | 20.0% |
| !! | AAATCTATTGCATATACTAT+TGG | - | chr5_4:1950435-1950454 | None:intergenic | 20.0% |
| !! | TCACTATTAATTTCTTTGTT+TGG | + | chr5_4:1950601-1950620 | Msa0828990:intron | 20.0% |
| !! | GAATATACAAAAAACTAACA+TGG | - | chr5_4:1950878-1950897 | None:intergenic | 20.0% |
| !!! | TTTGATTTTGTGAACAAAAT+AGG | - | chr5_4:1950926-1950945 | None:intergenic | 20.0% |
| !!! | ATATTGTATTTGCGTTTTAT+TGG | + | chr5_4:1951005-1951024 | Msa0828990:intron | 20.0% |
| !!! | ACATTGTTAGTTTGAAATAA+TGG | + | chr5_4:1951072-1951091 | Msa0828990:intron | 20.0% |
| !! | ATATCATATATGAAAAATGG+CGG | + | chr5_4:1951169-1951188 | Msa0828990:intron | 20.0% |
| !!! | TTCTAACAAACACAATATTT+TGG | - | chr5_4:1951573-1951592 | None:intergenic | 20.0% |
| !! | CAAAATTATCTATATCTCTT+CGG | + | chr5_4:1951944-1951963 | Msa0828990:intron | 20.0% |
| !! | AAAATTATCTATATCTCTTC+GGG | + | chr5_4:1951945-1951964 | Msa0828990:intron | 20.0% |
| !!! | TTTGTTTTTTTGGATTTGAA+TGG | + | chr5_4:1952198-1952217 | Msa0828990:intron | 20.0% |
| !!! | AAAGAATCATAAAGCATTAA+AGG | + | chr5_4:1952367-1952386 | Msa0828990:intron | 20.0% |
| !! | GAAATCATAACAAAATAACA+TGG | - | chr5_4:1952690-1952709 | None:intergenic | 20.0% |
| !! | TTTAGTTATGGATGTATTTA+GGG | - | chr5_4:1952994-1953013 | None:intergenic | 20.0% |
| !!! | ATTTTTTGTTTACAATTGAC+AGG | + | chr5_4:1953223-1953242 | Msa0828990:intron | 20.0% |
| !! | AAAAATTCTAATACCCTATT+TGG | + | chr5_4:1953382-1953401 | Msa0828990:intron | 20.0% |
| !!! | AATAATTGACTTATTATGCT+TGG | + | chr5_4:1953657-1953676 | Msa0828990:intron | 20.0% |
| ! | TTTGAAAGTAGAAAATATCC+CGG | + | chr5_4:1949151-1949170 | Msa0828990:five_prime_UTR | 25.0% |
| ! | TTTAGGAATTGAACTATTTC+CGG | - | chr5_4:1949319-1949338 | None:intergenic | 25.0% |
| ! | AAGAGAAAAACAAAGTGAAA+AGG | - | chr5_4:1949500-1949519 | None:intergenic | 25.0% |
| ! | GAAATATTCATTCAATTTCG+CGG | + | chr5_4:1949667-1949686 | Msa0828990:CDS | 25.0% |
| !! | AAATTTTTGCTTATAAGTGC+CGG | + | chr5_4:1949859-1949878 | Msa0828990:intron | 25.0% |
| !! | TTCTTCAATAATTGGTGATA+TGG | - | chr5_4:1949984-1950003 | None:intergenic | 25.0% |
| !!! | GTGTTGATTTCTTCAATAAT+TGG | - | chr5_4:1949992-1950011 | None:intergenic | 25.0% |
| ! | TATTGAAGAAATCAACACTT+TGG | + | chr5_4:1949994-1950013 | Msa0828990:intron | 25.0% |
| !! | TATAATTTGTATGTGTGTGT+TGG | + | chr5_4:1950091-1950110 | Msa0828990:intron | 25.0% |
| ! | TCATGCTAAGTTTCTATTAT+TGG | - | chr5_4:1950378-1950397 | None:intergenic | 25.0% |
| ! | CATAATCTTACTTGATATTG+AGG | + | chr5_4:1950405-1950424 | Msa0828990:intron | 25.0% |
| ! | TATGCAATAGATTTCATTAG+AGG | + | chr5_4:1950441-1950460 | Msa0828990:intron | 25.0% |
| ! | TAGTATATTAATTCTTGTGC+TGG | + | chr5_4:1950664-1950683 | Msa0828990:intron | 25.0% |
| ! | AAAAATACCTGTACTTTATC+AGG | - | chr5_4:1950805-1950824 | None:intergenic | 25.0% |
| ! | ACACAAAATGTATTATGTCA+GGG | - | chr5_4:1951035-1951054 | None:intergenic | 25.0% |
| ! | AACACAAAATGTATTATGTC+AGG | - | chr5_4:1951036-1951055 | None:intergenic | 25.0% |
| !!! | ATTTTGTGTTTTTACCACAA+TGG | + | chr5_4:1951046-1951065 | Msa0828990:intron | 25.0% |
| ! | AACTAAATATTGAAAGCAAG+TGG | + | chr5_4:1951251-1951270 | Msa0828990:intron | 25.0% |
| !!! | ACAAACACAATATTTTGGAA+TGG | - | chr5_4:1951568-1951587 | None:intergenic | 25.0% |
| ! | TTGTTTCAATTTCAAAACAC+TGG | + | chr5_4:1951599-1951618 | Msa0828990:intron | 25.0% |
| ! | TGTTTCAATTTCAAAACACT+GGG | + | chr5_4:1951600-1951619 | Msa0828990:intron | 25.0% |
| !!! | AGATGATTTGTTTTTACGAT+TGG | + | chr5_4:1951690-1951709 | Msa0828990:intron | 25.0% |
| !! | AATTGAATTTTCCCTTGTAA+TGG | + | chr5_4:1951748-1951767 | Msa0828990:intron | 25.0% |
| !! | ATTGAATTTTCCCTTGTAAT+GGG | + | chr5_4:1951749-1951768 | Msa0828990:intron | 25.0% |
| ! | GAACAAACATGAACATAAAA+TGG | + | chr5_4:1951779-1951798 | Msa0828990:intron | 25.0% |
| ! | ATTGAATGACAACATCTATA+AGG | - | chr5_4:1951840-1951859 | None:intergenic | 25.0% |
| ! | TACATTATGGAATGAGTAAA+TGG | - | chr5_4:1951915-1951934 | None:intergenic | 25.0% |
| ! | TTTGTTTGCAGTTTACATTA+TGG | - | chr5_4:1951928-1951947 | None:intergenic | 25.0% |
| ! | AAATTATCTATATCTCTTCG+GGG | + | chr5_4:1951946-1951965 | Msa0828990:intron | 25.0% |
| !! | ATTTTCTTGTATACCTGAAA+AGG | - | chr5_4:1952032-1952051 | None:intergenic | 25.0% |
| !!! | TTTTCCTTGTTTGATATACA+GGG | - | chr5_4:1952172-1952191 | None:intergenic | 25.0% |
| !!! | TTTTTCCTTGTTTGATATAC+AGG | - | chr5_4:1952173-1952192 | None:intergenic | 25.0% |
| ! | TTCAATAGATTTAGCTGAAT+AGG | - | chr5_4:1952348-1952367 | None:intergenic | 25.0% |
| !!! | CAAAGGTATCTTTTATTAAG+CGG | + | chr5_4:1952940-1952959 | Msa0828990:intron | 25.0% |
| ! | CTTTAGTTATGGATGTATTT+AGG | - | chr5_4:1952995-1953014 | None:intergenic | 25.0% |
| !! | AGTAACGTTTTCTTTAGTTA+TGG | - | chr5_4:1953006-1953025 | None:intergenic | 25.0% |
| !!! | TGAAATTTTGAAGCCAAATA+GGG | - | chr5_4:1953398-1953417 | None:intergenic | 25.0% |
| !!! | TTGAAATTTTGAAGCCAAAT+AGG | - | chr5_4:1953399-1953418 | None:intergenic | 25.0% |
| !! | ATTTCCATTTTCCTATTATG+AGG | - | chr5_4:1953434-1953453 | None:intergenic | 25.0% |
| ! | ATATGGATTCCATTTAACTA+TGG | + | chr5_4:1953772-1953791 | Msa0828990:exon | 25.0% |
| ! | TTCTCAACTTCATATTTCAT+AGG | + | chr5_4:1953962-1953981 | Msa0828990:three_prime_UTR | 25.0% |
| ! | TCTCAACTTCATATTTCATA+GGG | + | chr5_4:1953963-1953982 | Msa0828990:three_prime_UTR | 25.0% |
| AAGAGAAAAGATAGTTACTC+GGG | - | chr5_4:1949439-1949458 | None:intergenic | 30.0% | |
| GAAGAGAAAAGATAGTTACT+CGG | - | chr5_4:1949440-1949459 | None:intergenic | 30.0% | |
| !! | TTCTCTTTTTCATTTCTCAC+AGG | + | chr5_4:1949513-1949532 | Msa0828990:intron | 30.0% |
| !! | TCTCTTTTTCATTTCTCACA+GGG | + | chr5_4:1949514-1949533 | Msa0828990:intron | 30.0% |
| ! | TGTTGTAAAGCTTGATAACA+GGG | - | chr5_4:1949610-1949629 | None:intergenic | 30.0% |
| ! | TTGTTGTAAAGCTTGATAAC+AGG | - | chr5_4:1949611-1949630 | None:intergenic | 30.0% |
| TGTTATGTTATAGTTGACGT+TGG | + | chr5_4:1950139-1950158 | Msa0828990:intron | 30.0% | |
| CTTGTGTGAATAGTTTATGT+TGG | + | chr5_4:1950532-1950551 | Msa0828990:intron | 30.0% | |
| !!! | ATTAATTCTTGTGCTGGTTT+TGG | + | chr5_4:1950670-1950689 | Msa0828990:intron | 30.0% |
| TATATTCAGCATCAGAAATC+TGG | - | chr5_4:1950726-1950745 | None:intergenic | 30.0% | |
| ! | ACTAACAATGTTTTCCATTG+TGG | - | chr5_4:1951063-1951082 | None:intergenic | 30.0% |
| !! | ATGAGCATGCATTGATTAAA+AGG | - | chr5_4:1951105-1951124 | None:intergenic | 30.0% |
| CACAGGACATTTAGTAAAAA+AGG | - | chr5_4:1951134-1951153 | None:intergenic | 30.0% | |
| ! | TTTTTACTAAATGTCCTGTG+AGG | + | chr5_4:1951134-1951153 | Msa0828990:intron | 30.0% |
| ! | TTTTACTAAATGTCCTGTGA+GGG | + | chr5_4:1951135-1951154 | Msa0828990:intron | 30.0% |
| ! | TTTAGATTTTCTTCCTGTGT+AGG | + | chr5_4:1951347-1951366 | Msa0828990:intron | 30.0% |
| ATAAAATCCTATACCTACAC+AGG | - | chr5_4:1951363-1951382 | None:intergenic | 30.0% | |
| TTTCCTTATCTTGCATAAAG+AGG | + | chr5_4:1951410-1951429 | Msa0828990:intron | 30.0% | |
| TTCCTTATCTTGCATAAAGA+GGG | + | chr5_4:1951411-1951430 | Msa0828990:intron | 30.0% | |
| AAAGAAATTAGCTCAAGAGA+AGG | + | chr5_4:1951444-1951463 | Msa0828990:CDS | 30.0% | |
| !!! | ACACAATATTTTGGAATGGA+GGG | - | chr5_4:1951564-1951583 | None:intergenic | 30.0% |
| !!! | AACACAATATTTTGGAATGG+AGG | - | chr5_4:1951565-1951584 | None:intergenic | 30.0% |
| !!! | TGATTTGTTTTTACGATTGG+TGG | + | chr5_4:1951693-1951712 | Msa0828990:intron | 30.0% |
| !!! | GATTTGTTTTTACGATTGGT+GGG | + | chr5_4:1951694-1951713 | Msa0828990:intron | 30.0% |
| !!! | ATTTGTTTTTACGATTGGTG+GGG | + | chr5_4:1951695-1951714 | Msa0828990:intron | 30.0% |
| ! | TTGAATTTTCCCTTGTAATG+GGG | + | chr5_4:1951750-1951769 | Msa0828990:intron | 30.0% |
| TTCTTTAATCCCCATTACAA+GGG | - | chr5_4:1951762-1951781 | None:intergenic | 30.0% | |
| ! | CACTTTATCAATTCCTTTTC+AGG | + | chr5_4:1952016-1952035 | Msa0828990:intron | 30.0% |
| AGTCAAATAACAAGACGATA+GGG | - | chr5_4:1952100-1952119 | None:intergenic | 30.0% | |
| TAAATCATCATGCTAAACGA+AGG | - | chr5_4:1952129-1952148 | None:intergenic | 30.0% | |
| ! | TTTCCTTGTTTGATATACAG+GGG | - | chr5_4:1952171-1952190 | None:intergenic | 30.0% |
| ATTTGAATGGAACACATGAT+GGG | + | chr5_4:1952211-1952230 | Msa0828990:intron | 30.0% | |
| AGATATTCTACTATGATCTG+TGG | + | chr5_4:1952254-1952273 | Msa0828990:intron | 30.0% | |
| GATATTCTACTATGATCTGT+GGG | + | chr5_4:1952255-1952274 | Msa0828990:intron | 30.0% | |
| TTTAAACACGTATATGTGTG+TGG | + | chr5_4:1952744-1952763 | Msa0828990:intron | 30.0% | |
| TTAAACACGTATATGTGTGT+GGG | + | chr5_4:1952745-1952764 | Msa0828990:intron | 30.0% | |
| !!! | TTTTTTACTGTCTAGGTAGT+TGG | - | chr5_4:1952856-1952875 | None:intergenic | 30.0% |
| AGCGGAATATAAATCTCTAA+TGG | + | chr5_4:1952958-1952977 | Msa0828990:intron | 30.0% | |
| AATCGTGATTAGTATTCGTT+AGG | + | chr5_4:1953141-1953160 | Msa0828990:intron | 30.0% | |
| !! | TTTTGTTTACAATTGACAGG+TGG | + | chr5_4:1953226-1953245 | Msa0828990:intron | 30.0% |
| GGTAAATAGTAGAATTACCT+TGG | + | chr5_4:1953253-1953272 | Msa0828990:CDS | 30.0% | |
| TGCTTCCAAAATAGGATAAA+CGG | - | chr5_4:1953352-1953371 | None:intergenic | 30.0% | |
| ! | CATTTTCCTATTATGAGGTA+TGG | - | chr5_4:1953429-1953448 | None:intergenic | 30.0% |
| CATACCTCATAATAGGAAAA+TGG | + | chr5_4:1953427-1953446 | Msa0828990:intron | 30.0% | |
| AAGCTTAGTCCATAGTTAAA+TGG | - | chr5_4:1953784-1953803 | None:intergenic | 30.0% | |
| TCATATTTCATAGGGAAACA+AGG | + | chr5_4:1953971-1953990 | Msa0828990:three_prime_UTR | 30.0% | |
| CACAAATGTTCGATTATTCC+GGG | - | chr5_4:1949172-1949191 | None:intergenic | 35.0% | |
| CCACAAATGTTCGATTATTC+CGG | - | chr5_4:1949173-1949192 | None:intergenic | 35.0% | |
| GTTACTCACACCATTTCAAT+CGG | + | chr5_4:1949229-1949248 | Msa0828990:five_prime_UTR | 35.0% | |
| TGGCAATTTGAAAGTCGTTT+AGG | - | chr5_4:1949336-1949355 | None:intergenic | 35.0% | |
| AGAGAAAAGATAGTTACTCG+GGG | - | chr5_4:1949438-1949457 | None:intergenic | 35.0% | |
| AATAGAAACGAAACGTGTGA+AGG | - | chr5_4:1949475-1949494 | None:intergenic | 35.0% | |
| CAAGCTTTACAACAAGATCA+AGG | + | chr5_4:1949616-1949635 | Msa0828990:CDS | 35.0% | |
| GAAGAAGTGAAAGTAACCAA+TGG | - | chr5_4:1949757-1949776 | None:intergenic | 35.0% | |
| ATGTGATGATTATGCAGAAG+TGG | - | chr5_4:1949782-1949801 | None:intergenic | 35.0% | |
| TTGAAGAATGCAAAGAAGCA+AGG | + | chr5_4:1950165-1950184 | Msa0828990:CDS | 35.0% | |
| TGAAGAATGCAAAGAAGCAA+GGG | + | chr5_4:1950166-1950185 | Msa0828990:CDS | 35.0% | |
| !! | ATGACATCTGTTTGTTGTTC+AGG | - | chr5_4:1950259-1950278 | None:intergenic | 35.0% |
| ACAACAAACAGATGTCATTG+AGG | + | chr5_4:1950261-1950280 | Msa0828990:CDS | 35.0% | |
| !! | GACTGATTTGAAGAAGTTGA+AGG | + | chr5_4:1950283-1950302 | Msa0828990:CDS | 35.0% |
| AACTGTGGAAATGGATGATA+AGG | + | chr5_4:1950310-1950329 | Msa0828990:CDS | 35.0% | |
| CTTCTCATCTACTAATCCAA+AGG | - | chr5_4:1950512-1950531 | None:intergenic | 35.0% | |
| ! | TATATTGCAAGCTGCAGTTT+TGG | + | chr5_4:1950571-1950590 | Msa0828990:intron | 35.0% |
| ! | TGGCAACTGATTCTAATGAT+TGG | - | chr5_4:1950843-1950862 | None:intergenic | 35.0% |
| AATATTTGCACAGGCAGATA+GGG | - | chr5_4:1950990-1951009 | None:intergenic | 35.0% | |
| CGCAAATACAATATTTGCAC+AGG | - | chr5_4:1950999-1951018 | None:intergenic | 35.0% | |
| TCATATATGAAAAATGGCGG+TGG | + | chr5_4:1951172-1951191 | Msa0828990:intron | 35.0% | |
| ! | TTTTCTTCCTGTGTAGGTAT+AGG | + | chr5_4:1951353-1951372 | Msa0828990:intron | 35.0% |
| !! | GGGTATTTTAAATATCCACG+AGG | + | chr5_4:1951620-1951639 | Msa0828990:intron | 35.0% |
| CAAAGATAAATCATACCTCG+TGG | - | chr5_4:1951638-1951657 | None:intergenic | 35.0% | |
| TGCATAAATCCAACACAGTT+TGG | - | chr5_4:1951728-1951747 | None:intergenic | 35.0% | |
| GTTCTTTAATCCCCATTACA+AGG | - | chr5_4:1951763-1951782 | None:intergenic | 35.0% | |
| GAGTCAAATAACAAGACGAT+AGG | - | chr5_4:1952101-1952120 | None:intergenic | 35.0% | |
| TTTCCCCTGTATATCAAACA+AGG | + | chr5_4:1952165-1952184 | Msa0828990:intron | 35.0% | |
| GATTTGAATGGAACACATGA+TGG | + | chr5_4:1952210-1952229 | Msa0828990:intron | 35.0% | |
| GATTCTTTAGACCTTCCTAT+AGG | + | chr5_4:1952322-1952341 | Msa0828990:intron | 35.0% | |
| ATTTAGCTGAATAGGCCTAT+AGG | - | chr5_4:1952340-1952359 | None:intergenic | 35.0% | |
| !! | ACTTGATGACGAAGAAGTTA+TGG | + | chr5_4:1952394-1952413 | Msa0828990:intron | 35.0% |
| TTCAACCAAATTGACCTGAA+GGG | - | chr5_4:1952426-1952445 | None:intergenic | 35.0% | |
| TTTCAACCAAATTGACCTGA+AGG | - | chr5_4:1952427-1952446 | None:intergenic | 35.0% | |
| TTCAGGTCAATTTGGTTGAA+AGG | + | chr5_4:1952426-1952445 | Msa0828990:intron | 35.0% | |
| TTGGTTGAAAGGCAAACTAA+AGG | + | chr5_4:1952437-1952456 | Msa0828990:intron | 35.0% | |
| AGTGAAAGGTAATTAGCCAA+CGG | - | chr5_4:1952509-1952528 | None:intergenic | 35.0% | |
| AAAAATCATGCCTCAGTGAA+AGG | - | chr5_4:1952523-1952542 | None:intergenic | 35.0% | |
| !!! | TCTCGGATTTTTTACTGTCT+AGG | - | chr5_4:1952863-1952882 | None:intergenic | 35.0% |
| AGACAGTAAAAAATCCGAGA+TGG | + | chr5_4:1952863-1952882 | Msa0828990:CDS | 35.0% | |
| GCTGTGACATTGAAATAAGA+AGG | + | chr5_4:1952895-1952914 | Msa0828990:CDS | 35.0% | |
| AATAAGAAGGAGACATGTTG+AGG | + | chr5_4:1952908-1952927 | Msa0828990:CDS | 35.0% | |
| GTTTCAATCTGTGTATGAGA+GGG | + | chr5_4:1953046-1953065 | Msa0828990:intron | 35.0% | |
| GAGATAAGAAGTAATGTTGC+TGG | - | chr5_4:1953114-1953133 | None:intergenic | 35.0% | |
| AGAATCTGCAACAGAAAAAG+TGG | + | chr5_4:1953280-1953299 | Msa0828990:CDS | 35.0% | |
| ATGCGAAGAGATAGAAAAAG+AGG | + | chr5_4:1953319-1953338 | Msa0828990:CDS | 35.0% | |
| ! | GAGATAGAAAAAGAGGTATG+TGG | + | chr5_4:1953326-1953345 | Msa0828990:intron | 35.0% |
| ! | GTCAAATCCAGCTACTTTAA+TGG | - | chr5_4:1953751-1953770 | None:intergenic | 35.0% |
| AGTAGCTGGATTTGACAATA+TGG | + | chr5_4:1953755-1953774 | Msa0828990:CDS | 35.0% | |
| AAACTTTACACGTGTGTCTT+AGG | - | chr5_4:1953877-1953896 | None:intergenic | 35.0% | |
| TGCACATCTAACAAACATGA+CGG | - | chr5_4:1953906-1953925 | None:intergenic | 35.0% | |
| CCGGAATAATCGAACATTTG+TGG | + | chr5_4:1949170-1949189 | Msa0828990:five_prime_UTR | 40.0% | |
| GGAAATGTCGTTCTCTGTAA+CGG | - | chr5_4:1949359-1949378 | None:intergenic | 40.0% | |
| GACATTTCCAACCCTAAAAC+CGG | + | chr5_4:1949370-1949389 | Msa0828990:CDS | 40.0% | |
| TGAGGATGTGAGTGTAAAGA+TGG | - | chr5_4:1949405-1949424 | None:intergenic | 40.0% | |
| AGGATTCTCAAGATGCTCTA+GGG | - | chr5_4:1949567-1949586 | None:intergenic | 40.0% | |
| TTCTCAGTTTCTGCATCCAT+TGG | + | chr5_4:1949738-1949757 | Msa0828990:intron | 40.0% | |
| AATCCTATCCTCTTCGATCT+TGG | - | chr5_4:1950032-1950051 | None:intergenic | 40.0% | |
| ! | TTGTATGTGTGTGTTGGTAC+TGG | + | chr5_4:1950097-1950116 | Msa0828990:intron | 40.0% |
| GAAGAATGCAAAGAAGCAAG+GGG | + | chr5_4:1950167-1950186 | Msa0828990:CDS | 40.0% | |
| AAGAGAGATGCCTTATGTTC+AGG | + | chr5_4:1950190-1950209 | Msa0828990:CDS | 40.0% | |
| GAAGTTGAAGGAGAAAACTG+TGG | + | chr5_4:1950295-1950314 | Msa0828990:CDS | 40.0% | |
| GAAGGAGAAAACTGTGGAAA+TGG | + | chr5_4:1950301-1950320 | Msa0828990:CDS | 40.0% | |
| !! | AAGGTGAGTTTGTTGTCTGA+TGG | + | chr5_4:1950329-1950348 | Msa0828990:intron | 40.0% |
| ATCTACGTGAGCAATTCATG+TGG | + | chr5_4:1950471-1950490 | Msa0828990:intron | 40.0% | |
| TCTACGTGAGCAATTCATGT+GGG | + | chr5_4:1950472-1950491 | Msa0828990:intron | 40.0% | |
| TGAGCAATTCATGTGGGATT+AGG | + | chr5_4:1950478-1950497 | Msa0828990:intron | 40.0% | |
| GGATTAGGACATTGAACCTT+TGG | + | chr5_4:1950493-1950512 | Msa0828990:intron | 40.0% | |
| CAATATTTGCACAGGCAGAT+AGG | - | chr5_4:1950991-1951010 | None:intergenic | 40.0% | |
| AGCCCTCTTTATGCAAGATA+AGG | - | chr5_4:1951416-1951435 | None:intergenic | 40.0% | |
| CTTGGCATAAACTTCAACGA+GGG | - | chr5_4:1951518-1951537 | None:intergenic | 40.0% | |
| TATCTGGTGACAACATACCT+TGG | - | chr5_4:1951536-1951555 | None:intergenic | 40.0% | |
| AATGTCGAATCACTGCAAGA+AGG | + | chr5_4:1952049-1952068 | Msa0828990:intron | 40.0% | |
| AGTTATGGATAAGTCCCTTC+AGG | + | chr5_4:1952409-1952428 | Msa0828990:intron | 40.0% | |
| TAAGTCCCTTCAGGTCAATT+TGG | + | chr5_4:1952418-1952437 | Msa0828990:intron | 40.0% | |
| ATTCCATTTCCAAATGCCGT+TGG | + | chr5_4:1952490-1952509 | Msa0828990:intron | 40.0% | |
| TGGCTAATTACCTTTCACTG+AGG | + | chr5_4:1952510-1952529 | Msa0828990:intron | 40.0% | |
| ACAGCTCTTTGATTCCATCT+CGG | - | chr5_4:1952880-1952899 | None:intergenic | 40.0% | |
| TGTTGAGGCTGAGTATTCAA+AGG | + | chr5_4:1952923-1952942 | Msa0828990:CDS | 40.0% | |
| ! | CAGATTGAAACCAGTGTTGA+CGG | - | chr5_4:1953037-1953056 | None:intergenic | 40.0% |
| GGTTTCAATCTGTGTATGAG+AGG | + | chr5_4:1953045-1953064 | Msa0828990:intron | 40.0% | |
| TGTGTATGAGAGGGTTTGAA+GGG | + | chr5_4:1953055-1953074 | Msa0828990:intron | 40.0% | |
| GTTCAAACCATTCATCCACT+AGG | + | chr5_4:1953083-1953102 | Msa0828990:intron | 40.0% | |
| TTACAATTGACAGGTGGATG+CGG | + | chr5_4:1953232-1953251 | Msa0828990:intron | 40.0% | |
| ! | TGTTGCAGATTCTTTTGCCA+AGG | - | chr5_4:1953273-1953292 | None:intergenic | 40.0% |
| ! | TGTGGCCGTTTATCCTATTT+TGG | + | chr5_4:1953344-1953363 | Msa0828990:intron | 40.0% |
| !! | TCCTATTTTGGAAGCATGTG+TGG | + | chr5_4:1953356-1953375 | Msa0828990:intron | 40.0% |
| ACCACACATGCTTCCAAAAT+AGG | - | chr5_4:1953360-1953379 | None:intergenic | 40.0% | |
| TTGCAGCCATACCTCATAAT+AGG | + | chr5_4:1953420-1953439 | Msa0828990:intron | 40.0% | |
| ACATTGCAGTGTGCTTAACA+AGG | - | chr5_4:1953581-1953600 | None:intergenic | 40.0% | |
| ACTTTCAATCGCATGTGCAA+TGG | - | chr5_4:1953712-1953731 | None:intergenic | 40.0% | |
| ATTGCACATGCGATTGAAAG+TGG | + | chr5_4:1953711-1953730 | Msa0828990:CDS | 40.0% | |
| TTGCACATGCGATTGAAAGT+GGG | + | chr5_4:1953712-1953731 | Msa0828990:CDS | 40.0% | |
| ATAACGTGCTCAACATTGGA+TGG | - | chr5_4:1953808-1953827 | None:intergenic | 40.0% | |
| ! | GATGATAACGTGCTCAACAT+TGG | - | chr5_4:1953812-1953831 | None:intergenic | 40.0% |
| ATTCGCACTACGATTTCTAC+CGG | - | chr5_4:1953841-1953860 | None:intergenic | 40.0% | |
| TGTGCACTTAACATGTCAGT+CGG | + | chr5_4:1953920-1953939 | Msa0828990:three_prime_UTR | 40.0% | |
| ! | CTGTGTGATGCCGATTGAAA+TGG | - | chr5_4:1949242-1949261 | None:intergenic | 45.0% |
| AATGTCGTTCTCTGTAACGG+TGG | - | chr5_4:1949356-1949375 | None:intergenic | 45.0% | |
| GTAAAGATGGAAAACGACGC+CGG | - | chr5_4:1949392-1949411 | None:intergenic | 45.0% | |
| GAAAAGATAGTTACTCGGGG+AGG | - | chr5_4:1949435-1949454 | None:intergenic | 45.0% | |
| GAAACGTGTGAAGGAAGGAT+TGG | - | chr5_4:1949466-1949485 | None:intergenic | 45.0% | |
| GAAACGAAACGTGTGAAGGA+AGG | - | chr5_4:1949471-1949490 | None:intergenic | 45.0% | |
| CAGGATTCTCAAGATGCTCT+AGG | - | chr5_4:1949568-1949587 | None:intergenic | 45.0% | |
| GAGAATCCTGATCTTCACGT+TGG | + | chr5_4:1949578-1949597 | Msa0828990:CDS | 45.0% | |
| TCCTGATCTTCACGTTGGAT+CGG | + | chr5_4:1949583-1949602 | Msa0828990:CDS | 45.0% | |
| !! | TTATAAGTGCCGGAGCTAAC+CGG | + | chr5_4:1949869-1949888 | Msa0828990:intron | 45.0% |
| !!! | CTCTTTTGGCTTACTCGTTC+CGG | - | chr5_4:1949891-1949910 | None:intergenic | 45.0% |
| GAACGAGTAAGCCAAAAGAG+AGG | + | chr5_4:1949891-1949910 | Msa0828990:intron | 45.0% | |
| CGAAGAGGATAGGATTATGC+AGG | + | chr5_4:1950036-1950055 | Msa0828990:CDS | 45.0% | |
| AGAGATGCCTTATGTTCAGG+AGG | + | chr5_4:1950193-1950212 | Msa0828990:CDS | 45.0% | |
| !!! | TTGCAAGCTGCAGTTTTGGA+AGG | + | chr5_4:1950575-1950594 | Msa0828990:intron | 45.0% |
| TCAGTCGCCTGATAAAGTAC+AGG | + | chr5_4:1950795-1950814 | Msa0828990:CDS | 45.0% | |
| ATCATCAATTCAGCCCTCAC+AGG | - | chr5_4:1951151-1951170 | None:intergenic | 45.0% | |
| AGAAGGCAAGAAACGCTGAA+AGG | + | chr5_4:1951461-1951480 | Msa0828990:CDS | 45.0% | |
| CCTTGGCATAAACTTCAACG+AGG | - | chr5_4:1951519-1951538 | None:intergenic | 45.0% | |
| CCTCGTTGAAGTTTATGCCA+AGG | + | chr5_4:1951516-1951535 | Msa0828990:intron | 45.0% | |
| ATCCAACACAGTTTGGCCAA+AGG | - | chr5_4:1951721-1951740 | None:intergenic | 45.0% | |
| GGTGCAGGTTATACAAGAAC+AGG | + | chr5_4:1952070-1952089 | Msa0828990:intron | 45.0% | |
| AGCTGAATAGGCCTATAGGA+AGG | - | chr5_4:1952336-1952355 | None:intergenic | 45.0% | |
| TAGCCAACGGCATTTGGAAA+TGG | - | chr5_4:1952496-1952515 | None:intergenic | 45.0% | |
| GGTAATTAGCCAACGGCATT+TGG | - | chr5_4:1952502-1952521 | None:intergenic | 45.0% | |
| TCCATAAGCTCAACTGAGGA+GGG | - | chr5_4:1952780-1952799 | None:intergenic | 45.0% | |
| TTCCATAAGCTCAACTGAGG+AGG | - | chr5_4:1952781-1952800 | None:intergenic | 45.0% | |
| TCCTCAGTTGAGCTTATGGA+AGG | + | chr5_4:1952780-1952799 | Msa0828990:intron | 45.0% | |
| CCTCAGTTGAGCTTATGGAA+GGG | + | chr5_4:1952781-1952800 | Msa0828990:intron | 45.0% | |
| CTTCTTATCTCCGTCAACAC+TGG | + | chr5_4:1953024-1953043 | Msa0828990:intron | 45.0% | |
| CTGTGTATGAGAGGGTTTGA+AGG | + | chr5_4:1953054-1953073 | Msa0828990:intron | 45.0% | |
| ! | GGTTTCACCTAGTGGATGAA+TGG | - | chr5_4:1953093-1953112 | None:intergenic | 45.0% |
| !! | ATGTTGCTGGTTTCACCTAG+TGG | - | chr5_4:1953101-1953120 | None:intergenic | 45.0% |
| AGTGCGACCATTAAAGTAGC+TGG | + | chr5_4:1953741-1953760 | Msa0828990:CDS | 45.0% | |
| GCACGTTATCATCCAAACTC+CGG | + | chr5_4:1953819-1953838 | Msa0828990:three_prime_UTR | 45.0% | |
| CTACGATTTCTACCGGAGTT+TGG | - | chr5_4:1953834-1953853 | None:intergenic | 45.0% | |
| TACACGTGTGTCTTAGGCTA+AGG | - | chr5_4:1953871-1953890 | None:intergenic | 45.0% | |
| !!! | ATCTTATTTATTTATATAAA+GGG | - | chr5_4:1951674-1951693 | None:intergenic | 5.0% |
| TGTGAGTAACCCGTGATGCA+CGG | - | chr5_4:1949219-1949238 | None:intergenic | 50.0% | |
| GTCGCGGTTCGACATTTCTT+CGG | - | chr5_4:1949278-1949297 | None:intergenic | 50.0% | |
| !!! | GGAAAACGACGCCGGTTTTA+GGG | - | chr5_4:1949384-1949403 | None:intergenic | 50.0% |
| !!! | TGGAAAACGACGCCGGTTTT+AGG | - | chr5_4:1949385-1949404 | None:intergenic | 50.0% |
| ACCGATCCAACGTGAAGATC+AGG | - | chr5_4:1949587-1949606 | None:intergenic | 50.0% | |
| ! | AGGAAAAACTCGGTTCGACG+AGG | - | chr5_4:1949710-1949729 | None:intergenic | 50.0% |
| ! | CGTCGAACCGAGTTTTTCCT+CGG | + | chr5_4:1949710-1949729 | Msa0828990:CDS | 50.0% |
| !! | AAGAGCGCCGAGGAAAAACT+CGG | - | chr5_4:1949720-1949739 | None:intergenic | 50.0% |
| ! | TTACTCGTTCCGGTTAGCTC+CGG | - | chr5_4:1949881-1949900 | None:intergenic | 50.0% |
| GAGCCAAGATCGAAGAGGAT+AGG | + | chr5_4:1950026-1950045 | Msa0828990:CDS | 50.0% | |
| GATGCCTTATGTTCAGGAGG+TGG | + | chr5_4:1950196-1950215 | Msa0828990:CDS | 50.0% | |
| GCATCCACCTCCTGAACATA+AGG | - | chr5_4:1950203-1950222 | None:intergenic | 50.0% | |
| ATTTGCACAGGCAGATAGGG+TGG | - | chr5_4:1950987-1951006 | None:intergenic | 50.0% | |
| !! | GGAATGGAGGGAGTACTATC+TGG | - | chr5_4:1951552-1951571 | None:intergenic | 50.0% |
| TTTACGATTGGTGGGGCCTT+TGG | + | chr5_4:1951702-1951721 | Msa0828990:intron | 50.0% | |
| ! | GAATCACTGCAAGAAGGTGC+AGG | + | chr5_4:1952055-1952074 | Msa0828990:intron | 50.0% |
| CTTGTGCAAACACGCAATGC+TGG | + | chr5_4:1952466-1952485 | Msa0828990:intron | 50.0% | |
| TCCCTCCTCAGTTGAGCTTA+TGG | + | chr5_4:1952776-1952795 | Msa0828990:intron | 50.0% | |
| CCCTTCCATAAGCTCAACTG+AGG | - | chr5_4:1952784-1952803 | None:intergenic | 50.0% | |
| GGAAGGGATGAAGAAGCAGT+TGG | + | chr5_4:1952797-1952816 | Msa0828990:CDS | 50.0% | |
| ATGAGAGGGTTTGAAGGGCA+TGG | + | chr5_4:1953060-1953079 | Msa0828990:intron | 50.0% | |
| ! | TGAGAGGGTTTGAAGGGCAT+GGG | + | chr5_4:1953061-1953080 | Msa0828990:intron | 50.0% |
| GCACTTAACATGTCAGTCGG+TGG | + | chr5_4:1953923-1953942 | Msa0828990:three_prime_UTR | 50.0% | |
| AACATGTCAGTCGGTGGTTG+TGG | + | chr5_4:1953929-1953948 | Msa0828990:three_prime_UTR | 50.0% | |
| ATGCACGGTGGCGTTTACAG+CGG | - | chr5_4:1949204-1949223 | None:intergenic | 55.0% | |
| GTAAACGCCACCGTGCATCA+CGG | + | chr5_4:1949206-1949225 | Msa0828990:five_prime_UTR | 55.0% | |
| TAAACGCCACCGTGCATCAC+GGG | + | chr5_4:1949207-1949226 | Msa0828990:five_prime_UTR | 55.0% | |
| !!! | AACGACGCCGGTTTTAGGGT+TGG | - | chr5_4:1949380-1949399 | None:intergenic | 55.0% |
| ACTCGGGGAGGAGATAGTTG+AGG | - | chr5_4:1949423-1949442 | None:intergenic | 55.0% | |
| ! | AACTCGGTTCGACGAGGATC+AGG | - | chr5_4:1949704-1949723 | None:intergenic | 55.0% |
| !! | AGAAACTGAGAAGAGCGCCG+AGG | - | chr5_4:1949730-1949749 | None:intergenic | 55.0% |
| CGAGAGAGCCAAGATCGAAG+AGG | + | chr5_4:1950021-1950040 | Msa0828990:CDS | 55.0% | |
| TGTTCAGGAGGTGGATGCAC+AGG | + | chr5_4:1950205-1950224 | Msa0828990:CDS | 55.0% | |
| CAACGAGGGCAGTCTTCTTG+TGG | - | chr5_4:1951504-1951523 | None:intergenic | 55.0% | |
| GGCCTTTGGCCAAACTGTGT+TGG | + | chr5_4:1951716-1951735 | Msa0828990:intron | 55.0% | |
| TGCACGGTGGCGTTTACAGC+GGG | - | chr5_4:1949203-1949222 | None:intergenic | 60.0% | |
| GAGTAACCCGTGATGCACGG+TGG | - | chr5_4:1949216-1949235 | None:intergenic | 60.0% | |
| TGTCGAACCGCGACCACCCA+AGG | + | chr5_4:1949284-1949303 | Msa0828990:CDS | 65.0% | |
| ACCGCGACCACCCAAGGCTA+CGG | + | chr5_4:1949290-1949309 | Msa0828990:CDS | 65.0% | |
| TTTCCGGCCGCCGTAGCCTT+GGG | - | chr5_4:1949303-1949322 | None:intergenic | 65.0% | |
| ATTTCCGGCCGCCGTAGCCT+TGG | - | chr5_4:1949304-1949323 | None:intergenic | 65.0% | |
| ! | GCCGTAGCCTTGGGTGGTCG+CGG | - | chr5_4:1949294-1949313 | None:intergenic | 70.0% |
| GCGACCACCCAAGGCTACGG+CGG | + | chr5_4:1949293-1949312 | Msa0828990:CDS | 70.0% | |
| CCACCCAAGGCTACGGCGGC+CGG | + | chr5_4:1949297-1949316 | Msa0828990:CDS | 75.0% | |
| !! | CCGGCCGCCGTAGCCTTGGG+TGG | - | chr5_4:1949300-1949319 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 1949130 | 1954074 | 1949130 | ID=Msa0828990;Name=Msa0828990 |
| chr5_4 | mRNA | 1949130 | 1954074 | 1949130 | ID=Msa0828990-mRNA-1;Parent=Msa0828990;Name=Msa0828990-mRNA-1;_AED=0.18;_eAED=0.18;_QI=153|0.66|0.6|0.9|1|1|10|286|377 |
| chr5_4 | exon | 1949130 | 1949440 | 1949130 | ID=Msa0828990-mRNA-1:exon:516;Parent=Msa0828990-mRNA-1 |
| chr5_4 | exon | 1949535 | 1949743 | 1949535 | ID=Msa0828990-mRNA-1:exon:517;Parent=Msa0828990-mRNA-1 |
| chr5_4 | exon | 1950002 | 1950057 | 1950002 | ID=Msa0828990-mRNA-1:exon:518;Parent=Msa0828990-mRNA-1 |
| chr5_4 | exon | 1950152 | 1950331 | 1950152 | ID=Msa0828990-mRNA-1:exon:519;Parent=Msa0828990-mRNA-1 |
| chr5_4 | exon | 1950727 | 1950816 | 1950727 | ID=Msa0828990-mRNA-1:exon:520;Parent=Msa0828990-mRNA-1 |
| chr5_4 | exon | 1951430 | 1951482 | 1951430 | ID=Msa0828990-mRNA-1:exon:521;Parent=Msa0828990-mRNA-1 |
| chr5_4 | exon | 1951845 | 1951879 | 1951845 | ID=Msa0828990-mRNA-1:exon:522;Parent=Msa0828990-mRNA-1 |
| chr5_4 | exon | 1952787 | 1952944 | 1952787 | ID=Msa0828990-mRNA-1:exon:523;Parent=Msa0828990-mRNA-1 |
| chr5_4 | exon | 1953245 | 1953340 | 1953245 | ID=Msa0828990-mRNA-1:exon:524;Parent=Msa0828990-mRNA-1 |
| chr5_4 | exon | 1953690 | 1954074 | 1953690 | ID=Msa0828990-mRNA-1:exon:525;Parent=Msa0828990-mRNA-1 |
| chr5_4 | five_prime_UTR | 1949130 | 1949282 | 1949130 | ID=Msa0828990-mRNA-1:five_prime_utr;Parent=Msa0828990-mRNA-1 |
| chr5_4 | CDS | 1949283 | 1949440 | 1949283 | ID=Msa0828990-mRNA-1:cds;Parent=Msa0828990-mRNA-1 |
| chr5_4 | CDS | 1949535 | 1949743 | 1949535 | ID=Msa0828990-mRNA-1:cds;Parent=Msa0828990-mRNA-1 |
| chr5_4 | CDS | 1950002 | 1950057 | 1950002 | ID=Msa0828990-mRNA-1:cds;Parent=Msa0828990-mRNA-1 |
| chr5_4 | CDS | 1950152 | 1950331 | 1950152 | ID=Msa0828990-mRNA-1:cds;Parent=Msa0828990-mRNA-1 |
| chr5_4 | CDS | 1950727 | 1950816 | 1950727 | ID=Msa0828990-mRNA-1:cds;Parent=Msa0828990-mRNA-1 |
| chr5_4 | CDS | 1951430 | 1951482 | 1951430 | ID=Msa0828990-mRNA-1:cds;Parent=Msa0828990-mRNA-1 |
| chr5_4 | CDS | 1951845 | 1951879 | 1951845 | ID=Msa0828990-mRNA-1:cds;Parent=Msa0828990-mRNA-1 |
| chr5_4 | CDS | 1952787 | 1952944 | 1952787 | ID=Msa0828990-mRNA-1:cds;Parent=Msa0828990-mRNA-1 |
| chr5_4 | CDS | 1953245 | 1953340 | 1953245 | ID=Msa0828990-mRNA-1:cds;Parent=Msa0828990-mRNA-1 |
| chr5_4 | CDS | 1953690 | 1953788 | 1953690 | ID=Msa0828990-mRNA-1:cds;Parent=Msa0828990-mRNA-1 |
| chr5_4 | three_prime_UTR | 1953789 | 1954074 | 1953789 | ID=Msa0828990-mRNA-1:three_prime_utr;Parent=Msa0828990-mRNA-1 |
| Gene Sequence |
| Protein sequence |
