Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0657680 | XP_024629129.1 | 84.146 | 246 | 21 | 1 | 82 | 309 | 8 | 253 | 1.88e-140 | 412 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0657680 | sp|Q8RXJ0|NUF2_ARATH | 45.387 | 271 | 127 | 3 | 52 | 303 | 1 | 269 | 4.81e-64 | 214 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0657680 | A0A396GTH7 | 84.146 | 246 | 21 | 1 | 82 | 309 | 8 | 253 | 8.98e-141 | 412 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0657680 | Msa0697550 | 0.817182 | 3.766028e-52 | -8.615850e-47 |
| Msa0657680 | Msa0828990 | 0.863443 | 2.480039e-64 | -8.615850e-47 |
| Msa0657680 | Msa1438280 | 0.823895 | 1.082379e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0657680 | MtrunA17_Chr8g0380701 | 84.146 | 246 | 21 | 1 | 82 | 309 | 8 | 253 | 1.73e-144 | 412 |
| Msa0657680 | MtrunA17_Chr8g0380721 | 71.324 | 272 | 58 | 2 | 52 | 303 | 3 | 274 | 1.68e-129 | 381 |
| Msa0657680 | MtrunA17_Chr4g0025021 | 65.354 | 127 | 40 | 2 | 52 | 175 | 1 | 126 | 8.53e-51 | 168 |
| Msa0657680 | MtrunA17_Chr4g0025011 | 74.766 | 107 | 27 | 0 | 175 | 281 | 44 | 150 | 4.15e-45 | 154 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0657680 | AT1G61000.1 | 45.387 | 271 | 127 | 3 | 52 | 303 | 1 | 269 | 4.89e-65 | 214 |
Find 96 sgRNAs with CRISPR-Local
Find 298 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGACATCTGTTTGTTGTTC+AGG | 0.210075 | 4_3:+67516538 | None:intergenic |
| TTTAGGAATTGAACTATTTC+CGG | 0.233150 | 4_3:+67517479 | None:intergenic |
| CCACAAATGTTCGATTATTC+CGG | 0.257411 | 4_3:+67517625 | None:intergenic |
| GTCAAATCCAGCTACTTTAA+TGG | 0.261659 | 4_3:+67513046 | None:intergenic |
| AAACTTTACACGTGTGTCTT+AGG | 0.283307 | 4_3:+67512920 | None:intergenic |
| CTACGATTTCTACCGGAGTT+TGG | 0.305203 | 4_3:+67512963 | None:intergenic |
| AGTAGCTGGATTTGACAATA+TGG | 0.313329 | 4_3:-67513039 | Msa0657680:CDS |
| ATATGGATTCCATTTAACTA+TGG | 0.327768 | 4_3:-67513022 | Msa0657680:exon |
| TTCTCAACTTCATATTTCAT+AGG | 0.333718 | 4_3:-67512832 | Msa0657680:three_prime_UTR |
| AAGCTTAGTCCATAGTTAAA+TGG | 0.349716 | 4_3:+67513013 | None:intergenic |
| TTGTTGTAAAGCTTGATAAC+AGG | 0.354857 | 4_3:+67517187 | None:intergenic |
| TGGCAATTTGAAAGTCGTTT+AGG | 0.365645 | 4_3:+67517462 | None:intergenic |
| AACTCGGTTCGACGAGGATC+AGG | 0.373508 | 4_3:+67517094 | None:intergenic |
| ATTTCCGGCCGCCGTAGCCT+TGG | 0.374553 | 4_3:+67517494 | None:intergenic |
| CACAAATGTTCGATTATTCC+GGG | 0.387009 | 4_3:+67517626 | None:intergenic |
| CCACCCAAGGCTACGGCGGC+CGG | 0.400113 | 4_3:-67517498 | Msa0657680:CDS |
| TTTCCGGCCGCCGTAGCCTT+GGG | 0.425723 | 4_3:+67517495 | None:intergenic |
| GTCGCGGTTCGACATTTCTT+CGG | 0.430403 | 4_3:+67517520 | None:intergenic |
| AACATGTCAGTCGGTGGTTG+TGG | 0.434349 | 4_3:-67512865 | Msa0657680:three_prime_UTR |
| ACCGATCCAACGTGAAGATC+AGG | 0.435005 | 4_3:+67517211 | None:intergenic |
| CAGGATTCTCAAGATGCTCT+AGG | 0.447236 | 4_3:+67517230 | None:intergenic |
| AAGAGAGATGCCTTATGTTC+AGG | 0.450527 | 4_3:-67516604 | Msa0657680:CDS |
| AATCCTATCCTCTTCGATCT+TGG | 0.453367 | 4_3:+67516765 | None:intergenic |
| GAAATATTCATTCAATTTCG+CGG | 0.454407 | 4_3:-67517128 | Msa0657680:CDS |
| AACTGTGGAAATGGATGATA+AGG | 0.455579 | 4_3:-67516484 | Msa0657680:intron |
| GACATTTCCAACCCTAAAAC+CGG | 0.461248 | 4_3:-67517425 | Msa0657680:CDS |
| TCTCAACTTCATATTTCATA+GGG | 0.467385 | 4_3:-67512831 | Msa0657680:three_prime_UTR |
| CCGGAATAATCGAACATTTG+TGG | 0.469962 | 4_3:-67517625 | Msa0657680:CDS |
| GAAGGAGAAAACTGTGGAAA+TGG | 0.471678 | 4_3:-67516493 | Msa0657680:CDS |
| GCATCCACCTCCTGAACATA+AGG | 0.477376 | 4_3:+67516594 | None:intergenic |
| TATTGAAGAAATCAACACTT+TGG | 0.480199 | 4_3:-67516800 | Msa0657680:intron |
| CAAGCTTTACAACAAGATCA+AGG | 0.491392 | 4_3:-67517179 | Msa0657680:CDS |
| CTGTGTGATGGCGATTGAAA+TGG | 0.497253 | 4_3:+67517556 | None:intergenic |
| GACTGATTTGAAGAAGTTGA+AGG | 0.499065 | 4_3:-67516511 | Msa0657680:CDS |
| AGTGCGACCATTAAAGTAGC+TGG | 0.502330 | 4_3:-67513053 | Msa0657680:CDS |
| GCTGTGACATTGAAATAAGA+AGG | 0.503399 | 4_3:-67513899 | Msa0657680:CDS |
| CGAAGAGGATAGGATTATGC+AGG | 0.510366 | 4_3:-67516758 | Msa0657680:intron |
| ATTGCACATGCGATTGAAAG+TGG | 0.511159 | 4_3:-67513083 | Msa0657680:CDS |
| TACACGTGTGTCTTAGGCTA+AGG | 0.512094 | 4_3:+67512926 | None:intergenic |
| TAAACGCCACCGTGCATCAC+GGG | 0.517393 | 4_3:-67517588 | Msa0657680:CDS |
| ACCGCGACCACCCAAGGCTA+CGG | 0.522586 | 4_3:-67517505 | Msa0657680:CDS |
| GCCGTAGCCTTGGGTGGTCG+CGG | 0.528593 | 4_3:+67517504 | None:intergenic |
| ACAGCTCTTTGATTCCATCT+CGG | 0.529333 | 4_3:+67513917 | None:intergenic |
| TGCACGGTGGCGTTTACAGC+GGG | 0.531326 | 4_3:+67517595 | None:intergenic |
| GGAAGGGATGAAGAAGCAGT+TGG | 0.531481 | 4_3:-67513997 | Msa0657680:CDS |
| TGAGGATGTGAGTGTAAAGA+TGG | 0.535763 | 4_3:+67517393 | None:intergenic |
| TGTTCAGGAGGTGGATGCAC+AGG | 0.546856 | 4_3:-67516589 | Msa0657680:CDS |
| TCCTGATCTTCACGTTGGAT+CGG | 0.546920 | 4_3:-67517212 | Msa0657680:CDS |
| GATGATAACGTGCTCAACAT+TGG | 0.552257 | 4_3:+67512985 | None:intergenic |
| AATGTCGTTCTCTGTAACGG+TGG | 0.556631 | 4_3:+67517442 | None:intergenic |
| ACTTTCAATCGCATGTGCAA+TGG | 0.558375 | 4_3:+67513085 | None:intergenic |
| TCCTCAGTTGAGCTTATGGA+AGG | 0.559022 | 4_3:-67514014 | Msa0657680:intron |
| GAGCCAAGATCGAAGAGGAT+AGG | 0.559410 | 4_3:-67516768 | Msa0657680:CDS |
| GGTAAATAGTAGAATTACCT+TGG | 0.560260 | 4_3:-67513541 | Msa0657680:CDS |
| GGAAATGTCGTTCTCTGTAA+CGG | 0.561809 | 4_3:+67517439 | None:intergenic |
| TGAAGAATGCAAAGAAGCAA+GGG | 0.568057 | 4_3:-67516628 | Msa0657680:CDS |
| TGTTATGTTATAGTTGACGT+TGG | 0.570121 | 4_3:-67516655 | Msa0657680:intron |
| TGTCGAACCGCGACCACCCA+AGG | 0.574682 | 4_3:-67517511 | Msa0657680:CDS |
| GATGCCTTATGTTCAGGAGG+TGG | 0.577640 | 4_3:-67516598 | Msa0657680:CDS |
| ATTCGCACTACGATTTCTAC+CGG | 0.579364 | 4_3:+67512956 | None:intergenic |
| AGGATTCTCAAGATGCTCTA+GGG | 0.582230 | 4_3:+67517231 | None:intergenic |
| GAGAATCCTGATCTTCACGT+TGG | 0.583311 | 4_3:-67517217 | Msa0657680:CDS |
| TTGAAGAATGCAAAGAAGCA+AGG | 0.585930 | 4_3:-67516629 | Msa0657680:CDS |
| TTTGAAAGTAGAAAATATCC+CGG | 0.591716 | 4_3:-67517644 | Msa0657680:CDS |
| AAAGAAATTAGCTCAAGAGA+AGG | 0.593070 | 4_3:-67515350 | Msa0657680:CDS |
| ATAACGTGCTCAACATTGGA+TGG | 0.593412 | 4_3:+67512989 | None:intergenic |
| TCATATTTCATAGGGAAACA+AGG | 0.595680 | 4_3:-67512823 | Msa0657680:three_prime_UTR |
| TTACAATTGACAGGTGGATG+CGG | 0.596345 | 4_3:-67513562 | Msa0657680:intron |
| GTAAACGCCACCGTGCATCA+CGG | 0.602884 | 4_3:-67517589 | Msa0657680:CDS |
| GTAAAGATGGAAAACGACGC+CGG | 0.603830 | 4_3:+67517406 | None:intergenic |
| CCGGCCGCCGTAGCCTTGGG+TGG | 0.607394 | 4_3:+67517498 | None:intergenic |
| GAAAAGATAGTTACTCGGGG+AGG | 0.608338 | 4_3:+67517363 | None:intergenic |
| TGTTGAGGCTGAGTATTCAA+AGG | 0.614515 | 4_3:-67513871 | Msa0657680:intron |
| TCAGTCGCCTGATAAAGTAC+AGG | 0.621157 | 4_3:-67515999 | Msa0657680:intron |
| TGTTGTAAAGCTTGATAACA+GGG | 0.622146 | 4_3:+67517188 | None:intergenic |
| GAAGTTGAAGGAGAAAACTG+TGG | 0.622296 | 4_3:-67516499 | Msa0657680:CDS |
| GCGACCACCCAAGGCTACGG+CGG | 0.623441 | 4_3:-67517502 | Msa0657680:CDS |
| AAATTGAATGAATATTTCTG+AGG | 0.626572 | 4_3:+67517133 | None:intergenic |
| ACAACAAACAGATGTCATTG+AGG | 0.632333 | 4_3:-67516533 | Msa0657680:CDS |
| CGAGAGAGCCAAGATCGAAG+AGG | 0.637014 | 4_3:-67516773 | Msa0657680:CDS |
| ATGTATCTGACTCTGTGTGA+TGG | 0.637674 | 4_3:+67517544 | None:intergenic |
| CCTCAGTTGAGCTTATGGAA+GGG | 0.637886 | 4_3:-67514013 | Msa0657680:intron |
| TTGCACATGCGATTGAAAGT+GGG | 0.640805 | 4_3:-67513082 | Msa0657680:CDS |
| AGAAGGCAAGAAACGCTGAA+AGG | 0.647873 | 4_3:-67515333 | Msa0657680:CDS |
| TGCACATCTAACAAACATGA+CGG | 0.649069 | 4_3:+67512891 | None:intergenic |
| GCACGTTATCATCCAAACTC+CGG | 0.660219 | 4_3:-67512975 | Msa0657680:three_prime_UTR |
| AGAGATGCCTTATGTTCAGG+AGG | 0.660324 | 4_3:-67516601 | Msa0657680:CDS |
| ACTCGGGGAGGAGATAGTTG+AGG | 0.661042 | 4_3:+67517375 | None:intergenic |
| TGTGAGTAACCCGTGATGCA+CGG | 0.663073 | 4_3:+67517579 | None:intergenic |
| TGTGCACTTAACATGTCAGT+CGG | 0.663538 | 4_3:-67512874 | Msa0657680:three_prime_UTR |
| AATAAGAAGGAGACATGTTG+AGG | 0.665309 | 4_3:-67513886 | Msa0657680:CDS |
| ATGCACGGTGGCGTTTACAG+CGG | 0.684810 | 4_3:+67517594 | None:intergenic |
| GAAGAATGCAAAGAAGCAAG+GGG | 0.687158 | 4_3:-67516627 | Msa0657680:CDS |
| AGAAACTGAGAAGAGCGCCG+AGG | 0.742803 | 4_3:+67517068 | None:intergenic |
| GCACTTAACATGTCAGTCGG+TGG | 0.744445 | 4_3:-67512871 | Msa0657680:three_prime_UTR |
| GAGTAACCCGTGATGCACGG+TGG | 0.770874 | 4_3:+67517582 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CATCTTATTTATTTATATAA+AGG | + | chr4_3:67515288-67515307 | None:intergenic | 10.0% |
| !!! | ATTTTCAACATTATTTATAT+TGG | - | chr4_3:67515471-67515490 | Msa0657680:intron | 10.0% |
| !!! | AAAAACTTTTTTTGTTTTTT+TGG | - | chr4_3:67515801-67515820 | Msa0657680:intron | 10.0% |
| !!! | AGTAATTGTAAATAATTTTT+AGG | - | chr4_3:67517632-67517651 | Msa0657680:CDS | 10.0% |
| !! | ATATTAAAAAACTGACAATT+AGG | + | chr4_3:67513554-67513573 | None:intergenic | 15.0% |
| !! | TAACATGGAAAAAAAAATAA+TGG | + | chr4_3:67514476-67514495 | None:intergenic | 15.0% |
| !! | ATGATATCATATATGAAAAA+TGG | - | chr4_3:67514779-67514798 | Msa0657680:intron | 15.0% |
| !! | TAAGGAAATCAAATTTAAAT+AGG | + | chr4_3:67515011-67515030 | None:intergenic | 15.0% |
| !!! | TTTTACTTTTTCTGTTTTTT+TGG | - | chr4_3:67517117-67517136 | Msa0657680:CDS | 15.0% |
| !!! | AAATTGAATGAATATTTCTG+AGG | + | chr4_3:67513277-67513296 | None:intergenic | 20.0% |
| !! | AGTTATTCAATGAATTGAAA+AGG | - | chr4_3:67513447-67513466 | Msa0657680:intron | 20.0% |
| !!! | TTTTTTTTTTTCCTCTCTTT+TGG | + | chr4_3:67513517-67513536 | None:intergenic | 20.0% |
| !!! | ATTGTCAGTTTTTTAATATC+AGG | - | chr4_3:67513555-67513574 | Msa0657680:intron | 20.0% |
| !! | AAATCTATTGCATATACTAT+TGG | + | chr4_3:67514048-67514067 | None:intergenic | 20.0% |
| !! | TCACTATTAATTTCTTTGTT+TGG | - | chr4_3:67514214-67514233 | Msa0657680:intron | 20.0% |
| !! | GAATATACAAAAAACTAACA+TGG | + | chr4_3:67514491-67514510 | None:intergenic | 20.0% |
| !!! | TTTGATTTTGTGAACAAAAT+AGG | + | chr4_3:67514539-67514558 | None:intergenic | 20.0% |
| !!! | ATATTGTATTTGCGTTTTAT+TGG | - | chr4_3:67514618-67514637 | Msa0657680:intron | 20.0% |
| !!! | ACATTGTTAGTTTGAAATAA+TGG | - | chr4_3:67514685-67514704 | Msa0657680:intron | 20.0% |
| !! | ATATCATATATGAAAAATGG+CGG | - | chr4_3:67514782-67514801 | Msa0657680:intron | 20.0% |
| !!! | TTCTAACAAACACAATATTT+TGG | + | chr4_3:67515186-67515205 | None:intergenic | 20.0% |
| !! | CAAAATTATCTATATCTCTT+CGG | - | chr4_3:67515557-67515576 | Msa0657680:intron | 20.0% |
| !! | AAAATTATCTATATCTCTTC+GGG | - | chr4_3:67515558-67515577 | Msa0657680:intron | 20.0% |
| !!! | TTTGTTTTTTTGGATTTGAA+TGG | - | chr4_3:67515811-67515830 | Msa0657680:intron | 20.0% |
| !!! | AAAGAATCATAAAGCATTAA+AGG | - | chr4_3:67515980-67515999 | Msa0657680:intron | 20.0% |
| !! | GAAATCATAACAAAATAACA+TGG | + | chr4_3:67516303-67516322 | None:intergenic | 20.0% |
| !! | TTTAGTTATGGATGTATTTA+GGG | + | chr4_3:67516607-67516626 | None:intergenic | 20.0% |
| !!! | ATTTTTTGTTTACAATTGAC+AGG | - | chr4_3:67516836-67516855 | Msa0657680:intron | 20.0% |
| !! | AAAAATTCTAATACCCTATT+TGG | - | chr4_3:67516995-67517014 | Msa0657680:intron | 20.0% |
| !!! | AATAATTGACTTATTATGCT+TGG | - | chr4_3:67517270-67517289 | Msa0657680:intron | 20.0% |
| ! | TTTGAAAGTAGAAAATATCC+CGG | - | chr4_3:67512763-67512782 | Msa0657680:three_prime_UTR | 25.0% |
| ! | TTTAGGAATTGAACTATTTC+CGG | + | chr4_3:67512931-67512950 | None:intergenic | 25.0% |
| ! | AAGAGAAAAACAAAGTGAAA+AGG | + | chr4_3:67513112-67513131 | None:intergenic | 25.0% |
| ! | GAAATATTCATTCAATTTCG+CGG | - | chr4_3:67513279-67513298 | Msa0657680:intron | 25.0% |
| !! | AAATTTTTGCTTATAAGTGC+CGG | - | chr4_3:67513471-67513490 | Msa0657680:intron | 25.0% |
| !! | TTCTTCAATAATTGGTGATA+TGG | + | chr4_3:67513597-67513616 | None:intergenic | 25.0% |
| !!! | GTGTTGATTTCTTCAATAAT+TGG | + | chr4_3:67513605-67513624 | None:intergenic | 25.0% |
| ! | TATTGAAGAAATCAACACTT+TGG | - | chr4_3:67513607-67513626 | Msa0657680:intron | 25.0% |
| !! | TATAATTTGTATGTGTGTGT+TGG | - | chr4_3:67513704-67513723 | Msa0657680:intron | 25.0% |
| ! | TCATGCTAAGTTTCTATTAT+TGG | + | chr4_3:67513991-67514010 | None:intergenic | 25.0% |
| ! | CATAATCTTACTTGATATTG+AGG | - | chr4_3:67514018-67514037 | Msa0657680:intron | 25.0% |
| ! | TATGCAATAGATTTCATTAG+AGG | - | chr4_3:67514054-67514073 | Msa0657680:intron | 25.0% |
| ! | TAGTATATTAATTCTTGTGC+TGG | - | chr4_3:67514277-67514296 | Msa0657680:intron | 25.0% |
| ! | AAAAATACCTGTACTTTATC+AGG | + | chr4_3:67514418-67514437 | None:intergenic | 25.0% |
| ! | ACACAAAATGTATTATGTCA+GGG | + | chr4_3:67514648-67514667 | None:intergenic | 25.0% |
| ! | AACACAAAATGTATTATGTC+AGG | + | chr4_3:67514649-67514668 | None:intergenic | 25.0% |
| !!! | ATTTTGTGTTTTTACCACAA+TGG | - | chr4_3:67514659-67514678 | Msa0657680:intron | 25.0% |
| ! | AACTAAATATTGAAAGCAAG+TGG | - | chr4_3:67514864-67514883 | Msa0657680:intron | 25.0% |
| !!! | ACAAACACAATATTTTGGAA+TGG | + | chr4_3:67515181-67515200 | None:intergenic | 25.0% |
| ! | TTGTTTCAATTTCAAAACAC+TGG | - | chr4_3:67515212-67515231 | Msa0657680:intron | 25.0% |
| ! | TGTTTCAATTTCAAAACACT+GGG | - | chr4_3:67515213-67515232 | Msa0657680:intron | 25.0% |
| !!! | AGATGATTTGTTTTTACGAT+TGG | - | chr4_3:67515303-67515322 | Msa0657680:intron | 25.0% |
| !! | AATTGAATTTTCCCTTGTAA+TGG | - | chr4_3:67515361-67515380 | Msa0657680:CDS | 25.0% |
| !! | ATTGAATTTTCCCTTGTAAT+GGG | - | chr4_3:67515362-67515381 | Msa0657680:CDS | 25.0% |
| ! | GAACAAACATGAACATAAAA+TGG | - | chr4_3:67515392-67515411 | Msa0657680:intron | 25.0% |
| ! | ATTGAATGACAACATCTATA+AGG | + | chr4_3:67515453-67515472 | None:intergenic | 25.0% |
| ! | TACATTATGGAATGAGTAAA+TGG | + | chr4_3:67515528-67515547 | None:intergenic | 25.0% |
| ! | TTTGTTTGCAGTTTACATTA+TGG | + | chr4_3:67515541-67515560 | None:intergenic | 25.0% |
| ! | AAATTATCTATATCTCTTCG+GGG | - | chr4_3:67515559-67515578 | Msa0657680:intron | 25.0% |
| !! | ATTTTCTTGTATACCTGAAA+AGG | + | chr4_3:67515645-67515664 | None:intergenic | 25.0% |
| !!! | TTTTCCTTGTTTGATATACA+GGG | + | chr4_3:67515785-67515804 | None:intergenic | 25.0% |
| !!! | TTTTTCCTTGTTTGATATAC+AGG | + | chr4_3:67515786-67515805 | None:intergenic | 25.0% |
| ! | TTCAATAGATTTAGCTGAAT+AGG | + | chr4_3:67515961-67515980 | None:intergenic | 25.0% |
| !!! | CAAAGGTATCTTTTATTAAG+CGG | - | chr4_3:67516553-67516572 | Msa0657680:CDS | 25.0% |
| ! | CTTTAGTTATGGATGTATTT+AGG | + | chr4_3:67516608-67516627 | None:intergenic | 25.0% |
| !! | AGTAACGTTTTCTTTAGTTA+TGG | + | chr4_3:67516619-67516638 | None:intergenic | 25.0% |
| !!! | TGAAATTTTGAAGCCAAATA+GGG | + | chr4_3:67517011-67517030 | None:intergenic | 25.0% |
| !!! | TTGAAATTTTGAAGCCAAAT+AGG | + | chr4_3:67517012-67517031 | None:intergenic | 25.0% |
| !! | ATTTCCATTTTCCTATTATG+AGG | + | chr4_3:67517047-67517066 | None:intergenic | 25.0% |
| ! | ATATGGATTCCATTTAACTA+TGG | - | chr4_3:67517385-67517404 | Msa0657680:CDS | 25.0% |
| ! | TTCTCAACTTCATATTTCAT+AGG | - | chr4_3:67517575-67517594 | Msa0657680:CDS | 25.0% |
| ! | TCTCAACTTCATATTTCATA+GGG | - | chr4_3:67517576-67517595 | Msa0657680:CDS | 25.0% |
| AAGAGAAAAGATAGTTACTC+GGG | + | chr4_3:67513051-67513070 | None:intergenic | 30.0% | |
| GAAGAGAAAAGATAGTTACT+CGG | + | chr4_3:67513052-67513071 | None:intergenic | 30.0% | |
| !! | TTCTCTTTTTCATTTCTCAC+AGG | - | chr4_3:67513125-67513144 | Msa0657680:intron | 30.0% |
| !! | TCTCTTTTTCATTTCTCACA+GGG | - | chr4_3:67513126-67513145 | Msa0657680:intron | 30.0% |
| ! | TGTTGTAAAGCTTGATAACA+GGG | + | chr4_3:67513222-67513241 | None:intergenic | 30.0% |
| ! | TTGTTGTAAAGCTTGATAAC+AGG | + | chr4_3:67513223-67513242 | None:intergenic | 30.0% |
| TGTTATGTTATAGTTGACGT+TGG | - | chr4_3:67513752-67513771 | Msa0657680:intron | 30.0% | |
| CTTGTGTGAATAGTTTATGT+TGG | - | chr4_3:67514145-67514164 | Msa0657680:intron | 30.0% | |
| !!! | ATTAATTCTTGTGCTGGTTT+TGG | - | chr4_3:67514283-67514302 | Msa0657680:intron | 30.0% |
| TATATTCAGCATCAGAAATC+TGG | + | chr4_3:67514339-67514358 | None:intergenic | 30.0% | |
| ! | ACTAACAATGTTTTCCATTG+TGG | + | chr4_3:67514676-67514695 | None:intergenic | 30.0% |
| !! | ATGAGCATGCATTGATTAAA+AGG | + | chr4_3:67514718-67514737 | None:intergenic | 30.0% |
| CACAGGACATTTAGTAAAAA+AGG | + | chr4_3:67514747-67514766 | None:intergenic | 30.0% | |
| ! | TTTTTACTAAATGTCCTGTG+AGG | - | chr4_3:67514747-67514766 | Msa0657680:intron | 30.0% |
| ! | TTTTACTAAATGTCCTGTGA+GGG | - | chr4_3:67514748-67514767 | Msa0657680:intron | 30.0% |
| ! | TTTAGATTTTCTTCCTGTGT+AGG | - | chr4_3:67514960-67514979 | Msa0657680:intron | 30.0% |
| ATAAAATCCTATACCTACAC+AGG | + | chr4_3:67514976-67514995 | None:intergenic | 30.0% | |
| TTTCCTTATCTTGCATAAAG+AGG | - | chr4_3:67515023-67515042 | Msa0657680:intron | 30.0% | |
| TTCCTTATCTTGCATAAAGA+GGG | - | chr4_3:67515024-67515043 | Msa0657680:intron | 30.0% | |
| AAAGAAATTAGCTCAAGAGA+AGG | - | chr4_3:67515057-67515076 | Msa0657680:intron | 30.0% | |
| !!! | ACACAATATTTTGGAATGGA+GGG | + | chr4_3:67515177-67515196 | None:intergenic | 30.0% |
| !!! | AACACAATATTTTGGAATGG+AGG | + | chr4_3:67515178-67515197 | None:intergenic | 30.0% |
| !!! | TGATTTGTTTTTACGATTGG+TGG | - | chr4_3:67515306-67515325 | Msa0657680:intron | 30.0% |
| !!! | GATTTGTTTTTACGATTGGT+GGG | - | chr4_3:67515307-67515326 | Msa0657680:intron | 30.0% |
| !!! | ATTTGTTTTTACGATTGGTG+GGG | - | chr4_3:67515308-67515327 | Msa0657680:intron | 30.0% |
| ! | TTGAATTTTCCCTTGTAATG+GGG | - | chr4_3:67515363-67515382 | Msa0657680:CDS | 30.0% |
| TTCTTTAATCCCCATTACAA+GGG | + | chr4_3:67515375-67515394 | None:intergenic | 30.0% | |
| ! | CACTTTATCAATTCCTTTTC+AGG | - | chr4_3:67515629-67515648 | Msa0657680:intron | 30.0% |
| AGTCAAATAACAAGACGATA+GGG | + | chr4_3:67515713-67515732 | None:intergenic | 30.0% | |
| TAAATCATCATGCTAAACGA+AGG | + | chr4_3:67515742-67515761 | None:intergenic | 30.0% | |
| ! | TTTCCTTGTTTGATATACAG+GGG | + | chr4_3:67515784-67515803 | None:intergenic | 30.0% |
| ATTTGAATGGAACACATGAT+GGG | - | chr4_3:67515824-67515843 | Msa0657680:intron | 30.0% | |
| AGATATTCTACTATGATCTG+TGG | - | chr4_3:67515867-67515886 | Msa0657680:intron | 30.0% | |
| GATATTCTACTATGATCTGT+GGG | - | chr4_3:67515868-67515887 | Msa0657680:intron | 30.0% | |
| TTTAAACACGTATATGTGTG+TGG | - | chr4_3:67516357-67516376 | Msa0657680:intron | 30.0% | |
| TTAAACACGTATATGTGTGT+GGG | - | chr4_3:67516358-67516377 | Msa0657680:intron | 30.0% | |
| !!! | TTTTTTACTGTCTAGGTAGT+TGG | + | chr4_3:67516469-67516488 | None:intergenic | 30.0% |
| AGCGGAATATAAATCTCTAA+TGG | - | chr4_3:67516571-67516590 | Msa0657680:CDS | 30.0% | |
| AATCGTGATTAGTATTCGTT+AGG | - | chr4_3:67516754-67516773 | Msa0657680:intron | 30.0% | |
| !! | TTTTGTTTACAATTGACAGG+TGG | - | chr4_3:67516839-67516858 | Msa0657680:intron | 30.0% |
| GGTAAATAGTAGAATTACCT+TGG | - | chr4_3:67516866-67516885 | Msa0657680:intron | 30.0% | |
| TGCTTCCAAAATAGGATAAA+CGG | + | chr4_3:67516965-67516984 | None:intergenic | 30.0% | |
| ! | CATTTTCCTATTATGAGGTA+TGG | + | chr4_3:67517042-67517061 | None:intergenic | 30.0% |
| CATACCTCATAATAGGAAAA+TGG | - | chr4_3:67517040-67517059 | Msa0657680:intron | 30.0% | |
| AAGCTTAGTCCATAGTTAAA+TGG | + | chr4_3:67517397-67517416 | None:intergenic | 30.0% | |
| TCATATTTCATAGGGAAACA+AGG | - | chr4_3:67517584-67517603 | Msa0657680:CDS | 30.0% | |
| CACAAATGTTCGATTATTCC+GGG | + | chr4_3:67512784-67512803 | None:intergenic | 35.0% | |
| CCACAAATGTTCGATTATTC+CGG | + | chr4_3:67512785-67512804 | None:intergenic | 35.0% | |
| TGGCAATTTGAAAGTCGTTT+AGG | + | chr4_3:67512948-67512967 | None:intergenic | 35.0% | |
| AGAGAAAAGATAGTTACTCG+GGG | + | chr4_3:67513050-67513069 | None:intergenic | 35.0% | |
| AATAGAAACGAAACGTGTGA+AGG | + | chr4_3:67513087-67513106 | None:intergenic | 35.0% | |
| CAAGCTTTACAACAAGATCA+AGG | - | chr4_3:67513228-67513247 | Msa0657680:intron | 35.0% | |
| GAAGAAGTGAAAGTAACCAA+TGG | + | chr4_3:67513369-67513388 | None:intergenic | 35.0% | |
| ATGTGATGATTATGCAGAAG+TGG | + | chr4_3:67513394-67513413 | None:intergenic | 35.0% | |
| TTGAAGAATGCAAAGAAGCA+AGG | - | chr4_3:67513778-67513797 | Msa0657680:intron | 35.0% | |
| TGAAGAATGCAAAGAAGCAA+GGG | - | chr4_3:67513779-67513798 | Msa0657680:intron | 35.0% | |
| !! | ATGACATCTGTTTGTTGTTC+AGG | + | chr4_3:67513872-67513891 | None:intergenic | 35.0% |
| ACAACAAACAGATGTCATTG+AGG | - | chr4_3:67513874-67513893 | Msa0657680:CDS | 35.0% | |
| !! | GACTGATTTGAAGAAGTTGA+AGG | - | chr4_3:67513896-67513915 | Msa0657680:CDS | 35.0% |
| AACTGTGGAAATGGATGATA+AGG | - | chr4_3:67513923-67513942 | Msa0657680:CDS | 35.0% | |
| CTTCTCATCTACTAATCCAA+AGG | + | chr4_3:67514125-67514144 | None:intergenic | 35.0% | |
| ! | TATATTGCAAGCTGCAGTTT+TGG | - | chr4_3:67514184-67514203 | Msa0657680:intron | 35.0% |
| ! | TGGCAACTGATTCTAATGAT+TGG | + | chr4_3:67514456-67514475 | None:intergenic | 35.0% |
| AATATTTGCACAGGCAGATA+GGG | + | chr4_3:67514603-67514622 | None:intergenic | 35.0% | |
| CGCAAATACAATATTTGCAC+AGG | + | chr4_3:67514612-67514631 | None:intergenic | 35.0% | |
| TCATATATGAAAAATGGCGG+TGG | - | chr4_3:67514785-67514804 | Msa0657680:intron | 35.0% | |
| ! | TTTTCTTCCTGTGTAGGTAT+AGG | - | chr4_3:67514966-67514985 | Msa0657680:intron | 35.0% |
| !! | GGGTATTTTAAATATCCACG+AGG | - | chr4_3:67515233-67515252 | Msa0657680:intron | 35.0% |
| CAAAGATAAATCATACCTCG+TGG | + | chr4_3:67515251-67515270 | None:intergenic | 35.0% | |
| TGCATAAATCCAACACAGTT+TGG | + | chr4_3:67515341-67515360 | None:intergenic | 35.0% | |
| GTTCTTTAATCCCCATTACA+AGG | + | chr4_3:67515376-67515395 | None:intergenic | 35.0% | |
| GAGTCAAATAACAAGACGAT+AGG | + | chr4_3:67515714-67515733 | None:intergenic | 35.0% | |
| TTTCCCCTGTATATCAAACA+AGG | - | chr4_3:67515778-67515797 | Msa0657680:intron | 35.0% | |
| GATTTGAATGGAACACATGA+TGG | - | chr4_3:67515823-67515842 | Msa0657680:intron | 35.0% | |
| GATTCTTTAGACCTTCCTAT+AGG | - | chr4_3:67515935-67515954 | Msa0657680:intron | 35.0% | |
| ATTTAGCTGAATAGGCCTAT+AGG | + | chr4_3:67515953-67515972 | None:intergenic | 35.0% | |
| !! | ACTTGATGACGAAGAAGTTA+TGG | - | chr4_3:67516007-67516026 | Msa0657680:CDS | 35.0% |
| TTCAACCAAATTGACCTGAA+GGG | + | chr4_3:67516039-67516058 | None:intergenic | 35.0% | |
| TTTCAACCAAATTGACCTGA+AGG | + | chr4_3:67516040-67516059 | None:intergenic | 35.0% | |
| TTCAGGTCAATTTGGTTGAA+AGG | - | chr4_3:67516039-67516058 | Msa0657680:CDS | 35.0% | |
| TTGGTTGAAAGGCAAACTAA+AGG | - | chr4_3:67516050-67516069 | Msa0657680:CDS | 35.0% | |
| AGTGAAAGGTAATTAGCCAA+CGG | + | chr4_3:67516122-67516141 | None:intergenic | 35.0% | |
| AAAAATCATGCCTCAGTGAA+AGG | + | chr4_3:67516136-67516155 | None:intergenic | 35.0% | |
| !!! | TCTCGGATTTTTTACTGTCT+AGG | + | chr4_3:67516476-67516495 | None:intergenic | 35.0% |
| AGACAGTAAAAAATCCGAGA+TGG | - | chr4_3:67516476-67516495 | Msa0657680:intron | 35.0% | |
| GCTGTGACATTGAAATAAGA+AGG | - | chr4_3:67516508-67516527 | Msa0657680:CDS | 35.0% | |
| AATAAGAAGGAGACATGTTG+AGG | - | chr4_3:67516521-67516540 | Msa0657680:CDS | 35.0% | |
| GTTTCAATCTGTGTATGAGA+GGG | - | chr4_3:67516659-67516678 | Msa0657680:intron | 35.0% | |
| GAGATAAGAAGTAATGTTGC+TGG | + | chr4_3:67516727-67516746 | None:intergenic | 35.0% | |
| AGAATCTGCAACAGAAAAAG+TGG | - | chr4_3:67516893-67516912 | Msa0657680:intron | 35.0% | |
| ATGCGAAGAGATAGAAAAAG+AGG | - | chr4_3:67516932-67516951 | Msa0657680:intron | 35.0% | |
| ! | GAGATAGAAAAAGAGGTATG+TGG | - | chr4_3:67516939-67516958 | Msa0657680:intron | 35.0% |
| ! | GTCAAATCCAGCTACTTTAA+TGG | + | chr4_3:67517364-67517383 | None:intergenic | 35.0% |
| AGTAGCTGGATTTGACAATA+TGG | - | chr4_3:67517368-67517387 | Msa0657680:intron | 35.0% | |
| AAACTTTACACGTGTGTCTT+AGG | + | chr4_3:67517490-67517509 | None:intergenic | 35.0% | |
| TGCACATCTAACAAACATGA+CGG | + | chr4_3:67517519-67517538 | None:intergenic | 35.0% | |
| CCGGAATAATCGAACATTTG+TGG | - | chr4_3:67512782-67512801 | Msa0657680:three_prime_UTR | 40.0% | |
| ATGTATCTGACTCTGTGTGA+TGG | + | chr4_3:67512866-67512885 | None:intergenic | 40.0% | |
| GGAAATGTCGTTCTCTGTAA+CGG | + | chr4_3:67512971-67512990 | None:intergenic | 40.0% | |
| GACATTTCCAACCCTAAAAC+CGG | - | chr4_3:67512982-67513001 | Msa0657680:three_prime_UTR | 40.0% | |
| TGAGGATGTGAGTGTAAAGA+TGG | + | chr4_3:67513017-67513036 | None:intergenic | 40.0% | |
| AGGATTCTCAAGATGCTCTA+GGG | + | chr4_3:67513179-67513198 | None:intergenic | 40.0% | |
| TTCTCAGTTTCTGCATCCAT+TGG | - | chr4_3:67513350-67513369 | Msa0657680:intron | 40.0% | |
| AATCCTATCCTCTTCGATCT+TGG | + | chr4_3:67513645-67513664 | None:intergenic | 40.0% | |
| ! | TTGTATGTGTGTGTTGGTAC+TGG | - | chr4_3:67513710-67513729 | Msa0657680:intron | 40.0% |
| GAAGAATGCAAAGAAGCAAG+GGG | - | chr4_3:67513780-67513799 | Msa0657680:intron | 40.0% | |
| AAGAGAGATGCCTTATGTTC+AGG | - | chr4_3:67513803-67513822 | Msa0657680:intron | 40.0% | |
| GAAGTTGAAGGAGAAAACTG+TGG | - | chr4_3:67513908-67513927 | Msa0657680:CDS | 40.0% | |
| GAAGGAGAAAACTGTGGAAA+TGG | - | chr4_3:67513914-67513933 | Msa0657680:CDS | 40.0% | |
| !! | AAGGTGAGTTTGTTGTCTGA+TGG | - | chr4_3:67513942-67513961 | Msa0657680:CDS | 40.0% |
| ATCTACGTGAGCAATTCATG+TGG | - | chr4_3:67514084-67514103 | Msa0657680:intron | 40.0% | |
| TCTACGTGAGCAATTCATGT+GGG | - | chr4_3:67514085-67514104 | Msa0657680:intron | 40.0% | |
| TGAGCAATTCATGTGGGATT+AGG | - | chr4_3:67514091-67514110 | Msa0657680:intron | 40.0% | |
| GGATTAGGACATTGAACCTT+TGG | - | chr4_3:67514106-67514125 | Msa0657680:intron | 40.0% | |
| CAATATTTGCACAGGCAGAT+AGG | + | chr4_3:67514604-67514623 | None:intergenic | 40.0% | |
| AGCCCTCTTTATGCAAGATA+AGG | + | chr4_3:67515029-67515048 | None:intergenic | 40.0% | |
| CTTGGCATAAACTTCAACGA+GGG | + | chr4_3:67515131-67515150 | None:intergenic | 40.0% | |
| TATCTGGTGACAACATACCT+TGG | + | chr4_3:67515149-67515168 | None:intergenic | 40.0% | |
| AATGTCGAATCACTGCAAGA+AGG | - | chr4_3:67515662-67515681 | Msa0657680:intron | 40.0% | |
| AGTTATGGATAAGTCCCTTC+AGG | - | chr4_3:67516022-67516041 | Msa0657680:CDS | 40.0% | |
| TAAGTCCCTTCAGGTCAATT+TGG | - | chr4_3:67516031-67516050 | Msa0657680:CDS | 40.0% | |
| ATTCCATTTCCAAATGCCGT+TGG | - | chr4_3:67516103-67516122 | Msa0657680:intron | 40.0% | |
| TGGCTAATTACCTTTCACTG+AGG | - | chr4_3:67516123-67516142 | Msa0657680:intron | 40.0% | |
| ACAGCTCTTTGATTCCATCT+CGG | + | chr4_3:67516493-67516512 | None:intergenic | 40.0% | |
| TGTTGAGGCTGAGTATTCAA+AGG | - | chr4_3:67516536-67516555 | Msa0657680:CDS | 40.0% | |
| ! | CAGATTGAAACCAGTGTTGA+CGG | + | chr4_3:67516650-67516669 | None:intergenic | 40.0% |
| GGTTTCAATCTGTGTATGAG+AGG | - | chr4_3:67516658-67516677 | Msa0657680:intron | 40.0% | |
| TGTGTATGAGAGGGTTTGAA+GGG | - | chr4_3:67516668-67516687 | Msa0657680:intron | 40.0% | |
| GTTCAAACCATTCATCCACT+AGG | - | chr4_3:67516696-67516715 | Msa0657680:intron | 40.0% | |
| TTACAATTGACAGGTGGATG+CGG | - | chr4_3:67516845-67516864 | Msa0657680:intron | 40.0% | |
| ! | TGTTGCAGATTCTTTTGCCA+AGG | + | chr4_3:67516886-67516905 | None:intergenic | 40.0% |
| ! | TGTGGCCGTTTATCCTATTT+TGG | - | chr4_3:67516957-67516976 | Msa0657680:intron | 40.0% |
| !! | TCCTATTTTGGAAGCATGTG+TGG | - | chr4_3:67516969-67516988 | Msa0657680:intron | 40.0% |
| ACCACACATGCTTCCAAAAT+AGG | + | chr4_3:67516973-67516992 | None:intergenic | 40.0% | |
| TTGCAGCCATACCTCATAAT+AGG | - | chr4_3:67517033-67517052 | Msa0657680:intron | 40.0% | |
| ACATTGCAGTGTGCTTAACA+AGG | + | chr4_3:67517194-67517213 | None:intergenic | 40.0% | |
| ACTTTCAATCGCATGTGCAA+TGG | + | chr4_3:67517325-67517344 | None:intergenic | 40.0% | |
| ATTGCACATGCGATTGAAAG+TGG | - | chr4_3:67517324-67517343 | Msa0657680:intron | 40.0% | |
| TTGCACATGCGATTGAAAGT+GGG | - | chr4_3:67517325-67517344 | Msa0657680:intron | 40.0% | |
| ATAACGTGCTCAACATTGGA+TGG | + | chr4_3:67517421-67517440 | None:intergenic | 40.0% | |
| ! | GATGATAACGTGCTCAACAT+TGG | + | chr4_3:67517425-67517444 | None:intergenic | 40.0% |
| ATTCGCACTACGATTTCTAC+CGG | + | chr4_3:67517454-67517473 | None:intergenic | 40.0% | |
| TGTGCACTTAACATGTCAGT+CGG | - | chr4_3:67517533-67517552 | Msa0657680:CDS | 40.0% | |
| ! | CTGTGTGATGGCGATTGAAA+TGG | + | chr4_3:67512854-67512873 | None:intergenic | 45.0% |
| AATGTCGTTCTCTGTAACGG+TGG | + | chr4_3:67512968-67512987 | None:intergenic | 45.0% | |
| GTAAAGATGGAAAACGACGC+CGG | + | chr4_3:67513004-67513023 | None:intergenic | 45.0% | |
| GAAAAGATAGTTACTCGGGG+AGG | + | chr4_3:67513047-67513066 | None:intergenic | 45.0% | |
| GAAACGTGTGAAGGAAGGAT+TGG | + | chr4_3:67513078-67513097 | None:intergenic | 45.0% | |
| GAAACGAAACGTGTGAAGGA+AGG | + | chr4_3:67513083-67513102 | None:intergenic | 45.0% | |
| CAGGATTCTCAAGATGCTCT+AGG | + | chr4_3:67513180-67513199 | None:intergenic | 45.0% | |
| GAGAATCCTGATCTTCACGT+TGG | - | chr4_3:67513190-67513209 | Msa0657680:intron | 45.0% | |
| TCCTGATCTTCACGTTGGAT+CGG | - | chr4_3:67513195-67513214 | Msa0657680:intron | 45.0% | |
| !! | TTATAAGTGCCGGAGCTAAC+CGG | - | chr4_3:67513481-67513500 | Msa0657680:CDS | 45.0% |
| !!! | CTCTTTTGGCTTACTCGTTC+CGG | + | chr4_3:67513503-67513522 | None:intergenic | 45.0% |
| GAACGAGTAAGCCAAAAGAG+AGG | - | chr4_3:67513503-67513522 | Msa0657680:CDS | 45.0% | |
| CGAAGAGGATAGGATTATGC+AGG | - | chr4_3:67513649-67513668 | Msa0657680:intron | 45.0% | |
| AGAGATGCCTTATGTTCAGG+AGG | - | chr4_3:67513806-67513825 | Msa0657680:intron | 45.0% | |
| !!! | TTGCAAGCTGCAGTTTTGGA+AGG | - | chr4_3:67514188-67514207 | Msa0657680:intron | 45.0% |
| TCAGTCGCCTGATAAAGTAC+AGG | - | chr4_3:67514408-67514427 | Msa0657680:intron | 45.0% | |
| ATCATCAATTCAGCCCTCAC+AGG | + | chr4_3:67514764-67514783 | None:intergenic | 45.0% | |
| AGAAGGCAAGAAACGCTGAA+AGG | - | chr4_3:67515074-67515093 | Msa0657680:intron | 45.0% | |
| CCTTGGCATAAACTTCAACG+AGG | + | chr4_3:67515132-67515151 | None:intergenic | 45.0% | |
| CCTCGTTGAAGTTTATGCCA+AGG | - | chr4_3:67515129-67515148 | Msa0657680:intron | 45.0% | |
| ATCCAACACAGTTTGGCCAA+AGG | + | chr4_3:67515334-67515353 | None:intergenic | 45.0% | |
| GGTGCAGGTTATACAAGAAC+AGG | - | chr4_3:67515683-67515702 | Msa0657680:intron | 45.0% | |
| AGCTGAATAGGCCTATAGGA+AGG | + | chr4_3:67515949-67515968 | None:intergenic | 45.0% | |
| TAGCCAACGGCATTTGGAAA+TGG | + | chr4_3:67516109-67516128 | None:intergenic | 45.0% | |
| GGTAATTAGCCAACGGCATT+TGG | + | chr4_3:67516115-67516134 | None:intergenic | 45.0% | |
| TCCATAAGCTCAACTGAGGA+GGG | + | chr4_3:67516393-67516412 | None:intergenic | 45.0% | |
| TTCCATAAGCTCAACTGAGG+AGG | + | chr4_3:67516394-67516413 | None:intergenic | 45.0% | |
| TCCTCAGTTGAGCTTATGGA+AGG | - | chr4_3:67516393-67516412 | Msa0657680:intron | 45.0% | |
| CCTCAGTTGAGCTTATGGAA+GGG | - | chr4_3:67516394-67516413 | Msa0657680:intron | 45.0% | |
| CTTCTTATCTCCGTCAACAC+TGG | - | chr4_3:67516637-67516656 | Msa0657680:CDS | 45.0% | |
| CTGTGTATGAGAGGGTTTGA+AGG | - | chr4_3:67516667-67516686 | Msa0657680:intron | 45.0% | |
| ! | GGTTTCACCTAGTGGATGAA+TGG | + | chr4_3:67516706-67516725 | None:intergenic | 45.0% |
| !! | ATGTTGCTGGTTTCACCTAG+TGG | + | chr4_3:67516714-67516733 | None:intergenic | 45.0% |
| AGTGCGACCATTAAAGTAGC+TGG | - | chr4_3:67517354-67517373 | Msa0657680:intron | 45.0% | |
| GCACGTTATCATCCAAACTC+CGG | - | chr4_3:67517432-67517451 | Msa0657680:CDS | 45.0% | |
| CTACGATTTCTACCGGAGTT+TGG | + | chr4_3:67517447-67517466 | None:intergenic | 45.0% | |
| TACACGTGTGTCTTAGGCTA+AGG | + | chr4_3:67517484-67517503 | None:intergenic | 45.0% | |
| !!! | ATCTTATTTATTTATATAAA+GGG | + | chr4_3:67515287-67515306 | None:intergenic | 5.0% |
| TGTGAGTAACCCGTGATGCA+CGG | + | chr4_3:67512831-67512850 | None:intergenic | 50.0% | |
| GTCGCGGTTCGACATTTCTT+CGG | + | chr4_3:67512890-67512909 | None:intergenic | 50.0% | |
| !!! | GGAAAACGACGCCGGTTTTA+GGG | + | chr4_3:67512996-67513015 | None:intergenic | 50.0% |
| !!! | TGGAAAACGACGCCGGTTTT+AGG | + | chr4_3:67512997-67513016 | None:intergenic | 50.0% |
| ACCGATCCAACGTGAAGATC+AGG | + | chr4_3:67513199-67513218 | None:intergenic | 50.0% | |
| ! | AGGAAAAACTCGGTTCGACG+AGG | + | chr4_3:67513322-67513341 | None:intergenic | 50.0% |
| ! | CGTCGAACCGAGTTTTTCCT+CGG | - | chr4_3:67513322-67513341 | Msa0657680:intron | 50.0% |
| !! | AAGAGCGCCGAGGAAAAACT+CGG | + | chr4_3:67513332-67513351 | None:intergenic | 50.0% |
| ! | TTACTCGTTCCGGTTAGCTC+CGG | + | chr4_3:67513493-67513512 | None:intergenic | 50.0% |
| GAGCCAAGATCGAAGAGGAT+AGG | - | chr4_3:67513639-67513658 | Msa0657680:intron | 50.0% | |
| GATGCCTTATGTTCAGGAGG+TGG | - | chr4_3:67513809-67513828 | Msa0657680:intron | 50.0% | |
| GCATCCACCTCCTGAACATA+AGG | + | chr4_3:67513816-67513835 | None:intergenic | 50.0% | |
| ATTTGCACAGGCAGATAGGG+TGG | + | chr4_3:67514600-67514619 | None:intergenic | 50.0% | |
| !! | GGAATGGAGGGAGTACTATC+TGG | + | chr4_3:67515165-67515184 | None:intergenic | 50.0% |
| TTTACGATTGGTGGGGCCTT+TGG | - | chr4_3:67515315-67515334 | Msa0657680:intron | 50.0% | |
| ! | GAATCACTGCAAGAAGGTGC+AGG | - | chr4_3:67515668-67515687 | Msa0657680:intron | 50.0% |
| CTTGTGCAAACACGCAATGC+TGG | - | chr4_3:67516079-67516098 | Msa0657680:intron | 50.0% | |
| TCCCTCCTCAGTTGAGCTTA+TGG | - | chr4_3:67516389-67516408 | Msa0657680:intron | 50.0% | |
| CCCTTCCATAAGCTCAACTG+AGG | + | chr4_3:67516397-67516416 | None:intergenic | 50.0% | |
| GGAAGGGATGAAGAAGCAGT+TGG | - | chr4_3:67516410-67516429 | Msa0657680:intron | 50.0% | |
| ATGAGAGGGTTTGAAGGGCA+TGG | - | chr4_3:67516673-67516692 | Msa0657680:intron | 50.0% | |
| ! | TGAGAGGGTTTGAAGGGCAT+GGG | - | chr4_3:67516674-67516693 | Msa0657680:intron | 50.0% |
| GCACTTAACATGTCAGTCGG+TGG | - | chr4_3:67517536-67517555 | Msa0657680:CDS | 50.0% | |
| AACATGTCAGTCGGTGGTTG+TGG | - | chr4_3:67517542-67517561 | Msa0657680:CDS | 50.0% | |
| ATGCACGGTGGCGTTTACAG+CGG | + | chr4_3:67512816-67512835 | None:intergenic | 55.0% | |
| GTAAACGCCACCGTGCATCA+CGG | - | chr4_3:67512818-67512837 | Msa0657680:three_prime_UTR | 55.0% | |
| TAAACGCCACCGTGCATCAC+GGG | - | chr4_3:67512819-67512838 | Msa0657680:three_prime_UTR | 55.0% | |
| !!! | AACGACGCCGGTTTTAGGGT+TGG | + | chr4_3:67512992-67513011 | None:intergenic | 55.0% |
| ACTCGGGGAGGAGATAGTTG+AGG | + | chr4_3:67513035-67513054 | None:intergenic | 55.0% | |
| ! | AACTCGGTTCGACGAGGATC+AGG | + | chr4_3:67513316-67513335 | None:intergenic | 55.0% |
| !! | AGAAACTGAGAAGAGCGCCG+AGG | + | chr4_3:67513342-67513361 | None:intergenic | 55.0% |
| CGAGAGAGCCAAGATCGAAG+AGG | - | chr4_3:67513634-67513653 | Msa0657680:intron | 55.0% | |
| TGTTCAGGAGGTGGATGCAC+AGG | - | chr4_3:67513818-67513837 | Msa0657680:intron | 55.0% | |
| CAACGAGGGCAGTCTTCTTG+TGG | + | chr4_3:67515117-67515136 | None:intergenic | 55.0% | |
| GGCCTTTGGCCAAACTGTGT+TGG | - | chr4_3:67515329-67515348 | Msa0657680:intron | 55.0% | |
| TGCACGGTGGCGTTTACAGC+GGG | + | chr4_3:67512815-67512834 | None:intergenic | 60.0% | |
| GAGTAACCCGTGATGCACGG+TGG | + | chr4_3:67512828-67512847 | None:intergenic | 60.0% | |
| TGTCGAACCGCGACCACCCA+AGG | - | chr4_3:67512896-67512915 | Msa0657680:three_prime_UTR | 65.0% | |
| ACCGCGACCACCCAAGGCTA+CGG | - | chr4_3:67512902-67512921 | Msa0657680:three_prime_UTR | 65.0% | |
| TTTCCGGCCGCCGTAGCCTT+GGG | + | chr4_3:67512915-67512934 | None:intergenic | 65.0% | |
| ATTTCCGGCCGCCGTAGCCT+TGG | + | chr4_3:67512916-67512935 | None:intergenic | 65.0% | |
| ! | GCCGTAGCCTTGGGTGGTCG+CGG | + | chr4_3:67512906-67512925 | None:intergenic | 70.0% |
| GCGACCACCCAAGGCTACGG+CGG | - | chr4_3:67512905-67512924 | Msa0657680:three_prime_UTR | 70.0% | |
| CCACCCAAGGCTACGGCGGC+CGG | - | chr4_3:67512909-67512928 | Msa0657680:three_prime_UTR | 75.0% | |
| !! | CCGGCCGCCGTAGCCTTGGG+TGG | + | chr4_3:67512912-67512931 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 67512742 | 67517687 | 67512742 | ID=Msa0657680;Name=Msa0657680 |
| chr4_3 | mRNA | 67512742 | 67517687 | 67512742 | ID=Msa0657680-mRNA-1;Parent=Msa0657680;Name=Msa0657680-mRNA-1;_AED=0.17;_eAED=0.17;_QI=0|0.75|0.55|1|0.75|0.55|9|286|416 |
| chr4_3 | exon | 67512742 | 67513126 | 67512742 | ID=Msa0657680-mRNA-1:exon:19485;Parent=Msa0657680-mRNA-1 |
| chr4_3 | exon | 67513476 | 67513571 | 67513476 | ID=Msa0657680-mRNA-1:exon:19484;Parent=Msa0657680-mRNA-1 |
| chr4_3 | exon | 67513872 | 67514024 | 67513872 | ID=Msa0657680-mRNA-1:exon:19483;Parent=Msa0657680-mRNA-1 |
| chr4_3 | exon | 67515330 | 67515386 | 67515330 | ID=Msa0657680-mRNA-1:exon:19482;Parent=Msa0657680-mRNA-1 |
| chr4_3 | exon | 67516000 | 67516089 | 67516000 | ID=Msa0657680-mRNA-1:exon:19481;Parent=Msa0657680-mRNA-1 |
| chr4_3 | exon | 67516485 | 67516664 | 67516485 | ID=Msa0657680-mRNA-1:exon:19480;Parent=Msa0657680-mRNA-1 |
| chr4_3 | exon | 67516759 | 67516814 | 67516759 | ID=Msa0657680-mRNA-1:exon:19479;Parent=Msa0657680-mRNA-1 |
| chr4_3 | exon | 67517074 | 67517282 | 67517074 | ID=Msa0657680-mRNA-1:exon:19478;Parent=Msa0657680-mRNA-1 |
| chr4_3 | exon | 67517377 | 67517687 | 67517377 | ID=Msa0657680-mRNA-1:exon:19477;Parent=Msa0657680-mRNA-1 |
| chr4_3 | CDS | 67517377 | 67517687 | 67517377 | ID=Msa0657680-mRNA-1:cds;Parent=Msa0657680-mRNA-1 |
| chr4_3 | CDS | 67517074 | 67517282 | 67517074 | ID=Msa0657680-mRNA-1:cds;Parent=Msa0657680-mRNA-1 |
| chr4_3 | CDS | 67516759 | 67516814 | 67516759 | ID=Msa0657680-mRNA-1:cds;Parent=Msa0657680-mRNA-1 |
| chr4_3 | CDS | 67516485 | 67516664 | 67516485 | ID=Msa0657680-mRNA-1:cds;Parent=Msa0657680-mRNA-1 |
| chr4_3 | CDS | 67516000 | 67516089 | 67516000 | ID=Msa0657680-mRNA-1:cds;Parent=Msa0657680-mRNA-1 |
| chr4_3 | CDS | 67515330 | 67515386 | 67515330 | ID=Msa0657680-mRNA-1:cds;Parent=Msa0657680-mRNA-1 |
| chr4_3 | CDS | 67513872 | 67514024 | 67513872 | ID=Msa0657680-mRNA-1:cds;Parent=Msa0657680-mRNA-1 |
| chr4_3 | CDS | 67513476 | 67513571 | 67513476 | ID=Msa0657680-mRNA-1:cds;Parent=Msa0657680-mRNA-1 |
| chr4_3 | CDS | 67513028 | 67513126 | 67513028 | ID=Msa0657680-mRNA-1:cds;Parent=Msa0657680-mRNA-1 |
| chr4_3 | three_prime_UTR | 67512742 | 67513027 | 67512742 | ID=Msa0657680-mRNA-1:three_prime_utr;Parent=Msa0657680-mRNA-1 |
| Gene Sequence |
| Protein sequence |
