AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0829240


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0829240 MtrunA17_Chr3g0137551 94.527 201 1 1 1 201 1 191 3.27e-136 379
Msa0829240 MtrunA17_Chr3g0134721 71.585 183 42 1 11 193 70 242 3.53e-91 267
Msa0829240 MtrunA17_Chr5g0399031 70.492 183 44 1 11 193 10 182 4.27e-87 254
Msa0829240 MtrunA17_Chr4g0056471 66.667 183 51 1 11 193 8 180 9.44e-82 241
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0829240 AT5G11160.1 73.367 199 43 1 1 199 1 189 1.30e-100 289
Msa0829240 AT1G80050.1 71.357 199 47 1 1 199 1 189 2.58e-98 283
Msa0829240 AT4G12440.3 68.586 191 49 2 5 195 3 182 6.04e-89 259
Msa0829240 AT4G12440.2 68.586 191 49 2 5 195 3 182 6.04e-89 259
Msa0829240 AT4G22570.1 67.368 190 52 1 6 195 4 183 2.49e-86 253
Msa0829240 AT1G27450.2 66.120 183 52 1 11 193 8 180 2.10e-84 248
Msa0829240 AT1G27450.4 66.120 183 52 1 11 193 8 180 2.10e-84 248
Msa0829240 AT1G27450.1 66.120 183 52 1 11 193 68 240 1.54e-83 248
Msa0829240 AT5G11160.2 77.703 148 33 0 1 148 1 148 9.60e-81 238
Msa0829240 AT1G80050.2 70.659 167 39 1 33 199 1 157 3.06e-78 231
Msa0829240 AT1G27450.3 58.173 208 52 2 11 193 84 281 2.81e-77 233
Msa0829240 AT4G12440.1 77.083 96 21 1 4 99 2 96 8.46e-48 152
Msa0829240 AT4G12440.4 77.083 96 21 1 4 99 2 96 8.46e-48 152
Msa0829240 AT4G22570.2 72.632 95 26 0 6 100 4 98 2.06e-44 144

Find 60 sgRNAs with CRISPR-Local

Find 239 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAATAAATATAATCAGTTT+TGG 0.254134 5_4:-2163193 Msa0829240:five_prime_UTR
CAGGGACGGTGTAAACTTCT+TGG 0.284373 5_4:-2159994 Msa0829240:CDS
TGGGAGGGAGTGAGGGAGGG+AGG 0.301978 5_4:-2163173 Msa0829240:five_prime_UTR
TGGGAGATGTGTTGCAATCT+AGG 0.320267 5_4:+2163093 None:intergenic
CGCTGTCCAACCTGGTGAAC+GGG 0.371582 5_4:-2160966 Msa0829240:CDS
GCCGAAGAAAATGGTCTTAA+GGG 0.373266 5_4:-2163120 Msa0829240:CDS
TGCCGAAGAAAATGGTCTTA+AGG 0.403352 5_4:-2163121 Msa0829240:CDS
TCTGCAGTTGCGTTGGGAAT+TGG 0.405636 5_4:-2162494 Msa0829240:CDS
GAAGCAAGAGGGTTTGTGTT+TGG 0.411897 5_4:-2162518 Msa0829240:CDS
GATTGGTGTGCCTGAGGTTA+AGG 0.414050 5_4:-2160718 Msa0829240:CDS
AGAATGTTTGCCGAAGAAAA+TGG 0.424560 5_4:-2163129 Msa0829240:CDS
GTGGAATGTGCTTGTGTGAT+TGG 0.438632 5_4:-2160735 Msa0829240:CDS
ATCGACGACTTGGTTGCAAC+AGG 0.448378 5_4:-2160935 Msa0829240:CDS
GGGAGGGAGTGAGGGAGGGA+GGG 0.458138 5_4:-2163172 Msa0829240:five_prime_UTR
TTTGGTTCTGCAGTTGCGTT+GGG 0.461360 5_4:-2162500 Msa0829240:CDS
AACTGCAATGCAATGGCAAT+GGG 0.462376 5_4:+2163269 None:intergenic
AGCTTGCGAGGTTTGCGTAA+AGG 0.464262 5_4:+2162458 None:intergenic
GAGGGACGACTCTGATGGAC+TGG 0.472031 5_4:+2163073 None:intergenic
GCGCTGTCCAACCTGGTGAA+CGG 0.478342 5_4:-2160967 Msa0829240:CDS
ACGCAAACCTCGCAAGCTAC+CGG 0.479212 5_4:-2162453 Msa0829240:CDS
GTTTGGTTCTGCAGTTGCGT+TGG 0.491474 5_4:-2162501 Msa0829240:CDS
TGCAACAGGTGGAACTTTGT+CGG 0.495035 5_4:-2160921 Msa0829240:CDS
ATGCACATTTCAGTTGTTGC+TGG 0.495656 5_4:-2162704 Msa0829240:intron
GAGTGACGCTTGCTTGCTGA+TGG 0.500328 5_4:-2163331 Msa0829240:five_prime_UTR
CAACTGCAATGCAATGGCAA+TGG 0.524296 5_4:+2163268 None:intergenic
ACAGGTGGAACTTTGTCGGC+AGG 0.532728 5_4:-2160917 Msa0829240:CDS
TAAATATTTGCTCAAAGGAA+AGG 0.535738 5_4:-2163298 Msa0829240:five_prime_UTR
AGTAATAAATATTTGCTCAA+AGG 0.536448 5_4:-2163303 Msa0829240:five_prime_UTR
GGGAGATGTGTTGCAATCTA+GGG 0.544429 5_4:+2163094 None:intergenic
GGCTATAGTTATCGACGACT+TGG 0.544698 5_4:-2160945 Msa0829240:CDS
CATGTCGGCGCTGTCCAACC+TGG 0.547674 5_4:-2160974 Msa0829240:CDS
CGCAAACCTCGCAAGCTACC+GGG 0.550896 5_4:-2162452 Msa0829240:intron
CATTAGAATGTAGCGTGTGG+TGG 0.552393 5_4:-2163358 Msa0829240:five_prime_UTR
GAATGTAGCGTGTGGTGGGG+TGG 0.556798 5_4:-2163353 Msa0829240:five_prime_UTR
GGCTCCACAAGCACATAAAG+TGG 0.560359 5_4:+2159967 None:intergenic
CTGAGCCATACCTTAACCTC+AGG 0.561630 5_4:+2160708 None:intergenic
ATAACTATAGCCCGTTCACC+AGG 0.563626 5_4:+2160956 None:intergenic
ACGTGCTAAGGCTGAAGTAG+TGG 0.569286 5_4:-2160754 Msa0829240:CDS
ATTAGAATGTAGCGTGTGGT+GGG 0.569665 5_4:-2163357 Msa0829240:five_prime_UTR
AAAGCCACTTTATGTGCTTG+TGG 0.574929 5_4:-2159971 Msa0829240:CDS
GTTGTACCCGGTAGCTTGCG+AGG 0.575231 5_4:+2162446 None:intergenic
TCGGCAAACATTCTGTGTGG+TGG 0.577777 5_4:+2163138 None:intergenic
GACGACTTGGTTGCAACAGG+TGG 0.588976 5_4:-2160932 Msa0829240:CDS
CAATTATGTAGAACGTGCTA+AGG 0.591327 5_4:-2160766 Msa0829240:intron
GAAGTGAGGGACGACTCTGA+TGG 0.595744 5_4:+2163068 None:intergenic
ATGCAGCAACTGCAATGCAA+TGG 0.598086 5_4:+2163262 None:intergenic
TATTTATTCTGTGAAGTGTG+AGG 0.604185 5_4:+2163206 None:intergenic
CTATAGCCCGTTCACCAGGT+TGG 0.604880 5_4:+2160960 None:intergenic
TTGTGTGATTGGTGTGCCTG+AGG 0.609251 5_4:-2160724 Msa0829240:CDS
ATGCAGGAATTGAAGCAAGA+GGG 0.621946 5_4:-2162529 Msa0829240:intron
GTGTGCCTGAGGTTAAGGTA+TGG 0.624449 5_4:-2160713 Msa0829240:CDS
GACATTGTTGTTAGATCACA+AGG 0.630489 5_4:-2162771 Msa0829240:CDS
TTATTCTGTGAAGTGTGAGG+AGG 0.635065 5_4:+2163209 None:intergenic
TATGCAGGAATTGAAGCAAG+AGG 0.643982 5_4:-2162530 Msa0829240:intron
AGGGACGACTCTGATGGACT+GGG 0.649098 5_4:+2163074 None:intergenic
GATTGTTTAGAAATGCATGT+CGG 0.652967 5_4:-2160989 Msa0829240:CDS
TCTTCGGCAAACATTCTGTG+TGG 0.661008 5_4:+2163135 None:intergenic
TTAGAATGTAGCGTGTGGTG+GGG 0.677097 5_4:-2163356 Msa0829240:five_prime_UTR
AAGCATTCATCTACTTGACG+TGG 0.677392 5_4:+2159946 None:intergenic
GAGCATTAGAATGTAGCGTG+TGG 0.693426 5_4:-2163361 Msa0829240:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTATTAATAAATAAATAAA+TGG + chr5_4:2161328-2161347 None:intergenic 0.0%
!! AAAAAACTAAGTAATAAAAT+GGG - chr5_4:2160424-2160443 Msa0829240:intron 10.0%
!!! AAAAGAGAAATTTTTTATTT+TGG - chr5_4:2160700-2160719 Msa0829240:intron 10.0%
!!! AAAGAGAAATTTTTTATTTT+GGG - chr5_4:2160701-2160720 Msa0829240:intron 10.0%
!! TTTATTTATATTTATTTAGG+AGG - chr5_4:2161127-2161146 Msa0829240:intron 10.0%
!! TTATTTATATTTATTTAGGA+GGG - chr5_4:2161128-2161147 Msa0829240:intron 10.0%
!!! AATAAACTCAAATAAAATTT+TGG + chr5_4:2161190-2161209 None:intergenic 10.0%
!! TATTTATTAATAAACACTTT+CGG - chr5_4:2161334-2161353 Msa0829240:intron 10.0%
!!! TATTTGTATTTATTCATTTT+TGG + chr5_4:2162716-2162735 None:intergenic 10.0%
!!! ATTTGTATTTATTCATTTTT+TGG + chr5_4:2162715-2162734 None:intergenic 10.0%
!!! AGAATAAATATAATCAGTTT+TGG - chr5_4:2160113-2160132 Msa0829240:intron 15.0%
!!! GAATAAATATAATCAGTTTT+GGG - chr5_4:2160114-2160133 Msa0829240:intron 15.0%
!! ATTAAATAAGAAAAAAAGGA+AGG + chr5_4:2160295-2160314 None:intergenic 15.0%
!! CAAAAAACTAAGTAATAAAA+TGG - chr5_4:2160423-2160442 Msa0829240:intron 15.0%
!! ACAGAAATTAAATAAAAAAG+GGG + chr5_4:2160730-2160749 None:intergenic 15.0%
!! CACAGAAATTAAATAAAAAA+GGG + chr5_4:2160731-2160750 None:intergenic 15.0%
!! TCACAGAAATTAAATAAAAA+AGG + chr5_4:2160732-2160751 None:intergenic 15.0%
!!! ACTTTTTCTTATATTTAGTA+CGG + chr5_4:2161034-2161053 None:intergenic 15.0%
!! TACTAAATATAAGAAAAAGT+TGG - chr5_4:2161034-2161053 Msa0829240:intron 15.0%
!! ACTAAATATAAGAAAAAGTT+GGG - chr5_4:2161035-2161054 Msa0829240:intron 15.0%
!! AATAAAAATGTTGATGTATT+TGG + chr5_4:2161099-2161118 None:intergenic 15.0%
!! TATTTATATTTATTTAGGAG+GGG - chr5_4:2161129-2161148 Msa0829240:intron 15.0%
!! ATTTATTAATAAACACTTTC+GGG - chr5_4:2161335-2161354 Msa0829240:intron 15.0%
!!! TTAAATTTCTATCTTGTTAT+AGG - chr5_4:2162852-2162871 Msa0829240:intron 15.0%
!! TTCAAATAAGATTAATAACA+AGG + chr5_4:2163253-2163272 None:intergenic 15.0%
!! AGTAATAAATATTTGCTCAA+AGG - chr5_4:2160003-2160022 Msa0829240:CDS 20.0%
!!! AGAAAAGAAAACCATTTTTA+GGG + chr5_4:2160263-2160282 None:intergenic 20.0%
!!! AAGAAAAGAAAACCATTTTT+AGG + chr5_4:2160264-2160283 None:intergenic 20.0%
!! TTCTGTGATTTAATGTAATT+AGG - chr5_4:2160744-2160763 Msa0829240:CDS 20.0%
!! TGATTTAATGTAATTAGGTT+TGG - chr5_4:2160749-2160768 Msa0829240:CDS 20.0%
!!! CTTTTTCTTATATTTAGTAC+GGG + chr5_4:2161033-2161052 None:intergenic 20.0%
!! GAGTTTATTCAAAGAATATT+AGG - chr5_4:2161201-2161220 Msa0829240:intron 20.0%
!! GCCAATATATATATACTATT+CGG - chr5_4:2161700-2161719 Msa0829240:intron 20.0%
!! ACCGAATAGTATATATATAT+TGG + chr5_4:2161704-2161723 None:intergenic 20.0%
!! TATATATATACTATTCGGTA+CGG - chr5_4:2161705-2161724 Msa0829240:intron 20.0%
!!! CAATATTTTCAAATTGATCA+TGG - chr5_4:2161728-2161747 Msa0829240:intron 20.0%
!! TAAGTTGTATGTTATATGAT+AGG - chr5_4:2161954-2161973 Msa0829240:intron 20.0%
!! AAGTTGTATGTTATATGATA+GGG - chr5_4:2161955-2161974 Msa0829240:intron 20.0%
!! ACATATACTATTTAACTCAA+AGG + chr5_4:2162068-2162087 None:intergenic 20.0%
!! TGAGTTAAATAGTATATGTT+TGG - chr5_4:2162069-2162088 Msa0829240:intron 20.0%
!! TAAATAGTATATGTTTGGTT+TGG - chr5_4:2162074-2162093 Msa0829240:intron 20.0%
!! AATGAAACATATCAAAGTTT+AGG + chr5_4:2162251-2162270 None:intergenic 20.0%
!!! GAAAAATATTCTCTAGAATA+CGG - chr5_4:2162290-2162309 Msa0829240:intron 20.0%
!! TTATAATTGTTCATTGAATC+TGG - chr5_4:2162481-2162500 Msa0829240:CDS 20.0%
!!! AAGAAAGCATAAAGTATATT+GGG + chr5_4:2162515-2162534 None:intergenic 20.0%
!!! AAAGAAAGCATAAAGTATAT+TGG + chr5_4:2162516-2162535 None:intergenic 20.0%
!!! TGAAATTTCTATCTTGTTAT+AGG - chr5_4:2162664-2162683 Msa0829240:intron 20.0%
!!! AATCTTATTTGAAATCATGA+TGG - chr5_4:2163260-2163279 Msa0829240:five_prime_UTR 20.0%
! TAAATATTTGCTCAAAGGAA+AGG - chr5_4:2160008-2160027 Msa0829240:CDS 25.0%
!!! TAAATATAATCAGTTTTGGG+AGG - chr5_4:2160117-2160136 Msa0829240:intron 25.0%
!!! AAATATAATCAGTTTTGGGA+GGG - chr5_4:2160118-2160137 Msa0829240:intron 25.0%
!! TTAATGTAATTAGGTTTGGT+TGG - chr5_4:2160753-2160772 Msa0829240:CDS 25.0%
!! AGTAGTACTAAACTTTTATG+TGG - chr5_4:2160961-2160980 Msa0829240:CDS 25.0%
!! TACTAAACTTTTATGTGGAA+TGG - chr5_4:2160966-2160985 Msa0829240:CDS 25.0%
!! ACTAAACTTTTATGTGGAAT+GGG - chr5_4:2160967-2160986 Msa0829240:CDS 25.0%
! TGATGTATGAATATTCAATG+TGG - chr5_4:2161555-2161574 Msa0829240:intron 25.0%
! GATGTATGAATATTCAATGT+GGG - chr5_4:2161556-2161575 Msa0829240:intron 25.0%
! TGATTCATACAATTTCAATC+AGG + chr5_4:2161859-2161878 None:intergenic 25.0%
! TTCTGTTTAACCAAACTAAT+TGG - chr5_4:2161918-2161937 Msa0829240:intron 25.0%
! TCTGTTTAACCAAACTAATT+GGG - chr5_4:2161919-2161938 Msa0829240:intron 25.0%
!! ATGTTATATGATAGGGATTT+TGG - chr5_4:2161962-2161981 Msa0829240:intron 25.0%
! AAATCATCGTCAATAATCAT+TGG + chr5_4:2162124-2162143 None:intergenic 25.0%
!! CTTTGATATGTTTCATTTTC+AGG - chr5_4:2162254-2162273 Msa0829240:intron 25.0%
!! AGAAAGCATAAAGTATATTG+GGG + chr5_4:2162514-2162533 None:intergenic 25.0%
! TAACAAGATAGAAATTTCAG+AGG + chr5_4:2162663-2162682 None:intergenic 25.0%
!! AAACAAATTTGAAGTCCAAT+AGG + chr5_4:2162786-2162805 None:intergenic 25.0%
! TATGTACAACAAATTTGAAG+TGG + chr5_4:2162976-2162995 None:intergenic 25.0%
! TTAAAAATGTTAAGGAGAGT+TGG + chr5_4:2163185-2163204 None:intergenic 25.0%
TATTTATTCTGTGAAGTGTG+AGG + chr5_4:2160103-2160122 None:intergenic 30.0%
AGAAAAAAAGGAAGGAAAGA+AGG + chr5_4:2160287-2160306 None:intergenic 30.0%
ACTAAGTAATAAAATGGGTC+TGG - chr5_4:2160429-2160448 Msa0829240:intron 30.0%
CTAAGTAATAAAATGGGTCT+GGG - chr5_4:2160430-2160449 Msa0829240:intron 30.0%
! CACAAAAATGTGTAATTTGC+AGG - chr5_4:2160491-2160510 Msa0829240:intron 30.0%
ACAAAAAAAGTAGTGCATGA+GGG + chr5_4:2160647-2160666 None:intergenic 30.0%
AACAAAAAAAGTAGTGCATG+AGG + chr5_4:2160648-2160667 None:intergenic 30.0%
TTTCTTATATTTAGTACGGG+AGG + chr5_4:2161030-2161049 None:intergenic 30.0%
TATATTTATTTAGGAGGGGA+TGG - chr5_4:2161133-2161152 Msa0829240:intron 30.0%
AATAAACACTTTCGGGATAA+AGG - chr5_4:2161342-2161361 Msa0829240:intron 30.0%
TTCCATCACATAAAGTCAAT+TGG - chr5_4:2161419-2161438 Msa0829240:intron 30.0%
ACTTTCCTCTTAGATATTGT+GGG + chr5_4:2161475-2161494 None:intergenic 30.0%
! CATCAAATTGATGATCAGAT+TGG - chr5_4:2161754-2161773 Msa0829240:intron 30.0%
TTCATACAATTTCAATCAGG+AGG + chr5_4:2161856-2161875 None:intergenic 30.0%
TGAAATTGTATGAATCAACC+AGG - chr5_4:2161862-2161881 Msa0829240:intron 30.0%
CTGTTTAACCAAACTAATTG+GGG - chr5_4:2161920-2161939 Msa0829240:intron 30.0%
AAATTAAGCCCCAATTAGTT+TGG + chr5_4:2161931-2161950 None:intergenic 30.0%
AAACTAATTGGGGCTTAATT+TGG - chr5_4:2161930-2161949 Msa0829240:intron 30.0%
TAGATACGTTCTACAATTCA+GGG + chr5_4:2162155-2162174 None:intergenic 30.0%
ATAGATACGTTCTACAATTC+AGG + chr5_4:2162156-2162175 None:intergenic 30.0%
GATTGTTTAGAAATGCATGT+CGG - chr5_4:2162317-2162336 Msa0829240:intron 30.0%
!! AGGAATAAAACTTTTAGGTG+TGG - chr5_4:2162409-2162428 Msa0829240:intron 30.0%
ATAAGTCAAAAAATGACGCA+GGG + chr5_4:2162465-2162484 None:intergenic 30.0%
TATAAGTCAAAAAATGACGC+AGG + chr5_4:2162466-2162485 None:intergenic 30.0%
AGGTACTCTTAAAAGCTTAA+AGG - chr5_4:2162684-2162703 Msa0829240:intron 30.0%
! CTGAATTATTGATAGCCTAT+TGG - chr5_4:2162768-2162787 Msa0829240:CDS 30.0%
! GTTAAGACCTTTAAGCTTTT+AGG + chr5_4:2162882-2162901 None:intergenic 30.0%
! CAACAAATTTGAAGTGGAAT+AGG + chr5_4:2162970-2162989 None:intergenic 30.0%
! ATATCCTTATAGACTTGCTT+AGG - chr5_4:2163032-2163051 Msa0829240:intron 30.0%
! TATCCTTATAGACTTGCTTA+GGG - chr5_4:2163033-2163052 Msa0829240:intron 30.0%
!!! TAATGAAGCCTTCTTTTTTC+AGG - chr5_4:2163293-2163312 Msa0829240:five_prime_UTR 30.0%
!!! AATGAAGCCTTCTTTTTTCA+GGG - chr5_4:2163294-2163313 Msa0829240:five_prime_UTR 30.0%
AGAATGTTTGCCGAAGAAAA+TGG - chr5_4:2160177-2160196 Msa0829240:intron 35.0%
! ACCCTTAAGACCATTTTCTT+CGG + chr5_4:2160190-2160209 None:intergenic 35.0%
!! AACCATTTTTAGGGAAGTGA+GGG + chr5_4:2160254-2160273 None:intergenic 35.0%
!! AAACCATTTTTAGGGAAGTG+AGG + chr5_4:2160255-2160274 None:intergenic 35.0%
TCATGCAGTTTCTATCAGAA+TGG - chr5_4:2160355-2160374 Msa0829240:intron 35.0%
ATAAAGAGTTGCAGATCTGT+TGG + chr5_4:2160389-2160408 None:intergenic 35.0%
! GACATTGTTGTTAGATCACA+AGG - chr5_4:2160535-2160554 Msa0829240:intron 35.0%
ATGAACAGAAATGTTGTACC+CGG + chr5_4:2160875-2160894 None:intergenic 35.0%
! AACTTTTATGTGGAATGGGA+TGG - chr5_4:2160971-2160990 Msa0829240:CDS 35.0%
TTATATTTAGTACGGGAGGA+GGG + chr5_4:2161026-2161045 None:intergenic 35.0%
ATGTGATGTTCATTACTGTG+TGG - chr5_4:2161239-2161258 Msa0829240:intron 35.0%
! AGCCAATTGACTTTATGTGA+TGG + chr5_4:2161424-2161443 None:intergenic 35.0%
!! ATATTGTGGGCTAGTTAACT+AGG + chr5_4:2161462-2161481 None:intergenic 35.0%
CACTTTCCTCTTAGATATTG+TGG + chr5_4:2161476-2161495 None:intergenic 35.0%
AGTGAAACAAATGTATGTGC+TGG - chr5_4:2161620-2161639 Msa0829240:intron 35.0%
! TTTTTCCTCTTGATCTGCAT+TGG - chr5_4:2161669-2161688 Msa0829240:intron 35.0%
! TTTTCCTCTTGATCTGCATT+GGG - chr5_4:2161670-2161689 Msa0829240:intron 35.0%
AATTGTATGAATCAACCAGG+TGG - chr5_4:2161865-2161884 Msa0829240:intron 35.0%
TGGAGGTAAACGTATCTAAT+TGG - chr5_4:2161885-2161904 Msa0829240:intron 35.0%
TTGATTGAACTTAAGCACAC+TGG + chr5_4:2162002-2162021 None:intergenic 35.0%
!! TATATGTTTGGTTTGGTAGC+TGG - chr5_4:2162081-2162100 Msa0829240:intron 35.0%
! TCGGCAGGAATAAAACTTTT+AGG - chr5_4:2162404-2162423 Msa0829240:intron 35.0%
TAAGTCAAAAAATGACGCAG+GGG + chr5_4:2162464-2162483 None:intergenic 35.0%
! TTGTTCATTGAATCTGGTTC+TGG - chr5_4:2162487-2162506 Msa0829240:CDS 35.0%
CTTAGCACGTTCTACATAAT+TGG + chr5_4:2162542-2162561 None:intergenic 35.0%
CAATTATGTAGAACGTGCTA+AGG - chr5_4:2162540-2162559 Msa0829240:intron 35.0%
AGGTACTCCTAAAAGCTTAA+AGG - chr5_4:2162872-2162891 Msa0829240:intron 35.0%
ATTACTTGTTCACTTGTGCT+CGG + chr5_4:2163014-2163033 None:intergenic 35.0%
TAACCCTAAGCAAGTCTATA+AGG + chr5_4:2163039-2163058 None:intergenic 35.0%
ATTAGAATGTAGCGTGTGGT+GGG - chr5_4:2159949-2159968 Msa0829240:CDS 40.0%
AACTGCAATGCAATGGCAAT+GGG + chr5_4:2160040-2160059 None:intergenic 40.0%
TTATTCTGTGAAGTGTGAGG+AGG + chr5_4:2160100-2160119 None:intergenic 40.0%
! TGCCGAAGAAAATGGTCTTA+AGG - chr5_4:2160185-2160204 Msa0829240:intron 40.0%
! GCCGAAGAAAATGGTCTTAA+GGG - chr5_4:2160186-2160205 Msa0829240:intron 40.0%
ATGCACATTTCAGTTGTTGC+TGG - chr5_4:2160602-2160621 Msa0829240:intron 40.0%
CATTTCAGTTGTTGCTGGTA+TGG - chr5_4:2160607-2160626 Msa0829240:intron 40.0%
AAAAAGTAGTGCATGAGGGA+GGG + chr5_4:2160643-2160662 None:intergenic 40.0%
AAAAAAGTAGTGCATGAGGG+AGG + chr5_4:2160644-2160663 None:intergenic 40.0%
! ATTAGGTTTGGTTGGTATGC+AGG - chr5_4:2160761-2160780 Msa0829240:intron 40.0%
TATGCAGGAATTGAAGCAAG+AGG - chr5_4:2160776-2160795 Msa0829240:intron 40.0%
ATGCAGGAATTGAAGCAAGA+GGG - chr5_4:2160777-2160796 Msa0829240:intron 40.0%
CAAGTTTCAGCAGCTAAAAG+TGG + chr5_4:2160939-2160958 None:intergenic 40.0%
CTTATATTTAGTACGGGAGG+AGG + chr5_4:2161027-2161046 None:intergenic 40.0%
! AGGGGATGGAGTATTATCTT+TGG - chr5_4:2161147-2161166 Msa0829240:intron 40.0%
TGATGTTCATTACTGTGTGG+AGG - chr5_4:2161242-2161261 Msa0829240:intron 40.0%
! TGTGATGGAACAACCAAAGT+AGG + chr5_4:2161409-2161428 None:intergenic 40.0%
ACTAGCCCACAATATCTAAG+AGG - chr5_4:2161467-2161486 Msa0829240:intron 40.0%
! GCTGGTATTGTTGCTTAGTT+TGG - chr5_4:2161638-2161657 Msa0829240:intron 40.0%
AGGAGTGATCAAGTTACTTC+AGG + chr5_4:2161836-2161855 None:intergenic 40.0%
! GTCTTTGTTTGCATTCACAG+TGG + chr5_4:2162208-2162227 None:intergenic 40.0%
TTACTTGTTCACTTGTGCTC+GGG + chr5_4:2163013-2163032 None:intergenic 40.0%
TTCTCCTGTTGTCGATATGA+GGG - chr5_4:2163075-2163094 Msa0829240:CDS 40.0%
ATCAATGATGTGCGGTGTAA+AGG + chr5_4:2163127-2163146 None:intergenic 40.0%
GGAAAAGGATCAATGATGTG+CGG + chr5_4:2163135-2163154 None:intergenic 40.0%
!!! AAGCCTTCTTTTTTCAGGGA+CGG - chr5_4:2163298-2163317 Msa0829240:five_prime_UTR 40.0%
! AAAGCCACTTTATGTGCTTG+TGG - chr5_4:2163335-2163354 Msa0829240:five_prime_UTR 40.0%
AAGCATTCATCTACTTGACG+TGG + chr5_4:2163363-2163382 None:intergenic 40.0%
GAGCATTAGAATGTAGCGTG+TGG - chr5_4:2159945-2159964 Msa0829240:CDS 45.0%
CATTAGAATGTAGCGTGTGG+TGG - chr5_4:2159948-2159967 Msa0829240:CDS 45.0%
TTAGAATGTAGCGTGTGGTG+GGG - chr5_4:2159950-2159969 Msa0829240:CDS 45.0%
CAACTGCAATGCAATGGCAA+TGG + chr5_4:2160041-2160060 None:intergenic 45.0%
ATGCAGCAACTGCAATGCAA+TGG + chr5_4:2160047-2160066 None:intergenic 45.0%
TCTTCGGCAAACATTCTGTG+TGG + chr5_4:2160174-2160193 None:intergenic 45.0%
GGGAGATGTGTTGCAATCTA+GGG + chr5_4:2160215-2160234 None:intergenic 45.0%
TGGGAGATGTGTTGCAATCT+AGG + chr5_4:2160216-2160235 None:intergenic 45.0%
GTCCCTCACTTCCCTAAAAA+TGG - chr5_4:2160249-2160268 Msa0829240:intron 45.0%
!! CTGGGTGTTTTTGTCTGTGT+TGG - chr5_4:2160448-2160467 Msa0829240:intron 45.0%
GAAGCAAGAGGGTTTGTGTT+TGG - chr5_4:2160788-2160807 Msa0829240:intron 45.0%
!! TTTGGTTCTGCAGTTGCGTT+GGG - chr5_4:2160806-2160825 Msa0829240:intron 45.0%
TTTCGGGATAAAGGCTGTCA+TGG - chr5_4:2161351-2161370 Msa0829240:intron 45.0%
GGAACAACCAAAGTAGGACA+AGG + chr5_4:2161403-2161422 None:intergenic 45.0%
TTGACCCAATGCAGATCAAG+AGG + chr5_4:2161677-2161696 None:intergenic 45.0%
TGTATGAATCAACCAGGTGG+AGG - chr5_4:2161868-2161887 Msa0829240:intron 45.0%
TAGATACGTTTACCTCCACC+TGG + chr5_4:2161883-2161902 None:intergenic 45.0%
TGAGTTATTCCACTGTGCTG+CGG - chr5_4:2162178-2162197 Msa0829240:intron 45.0%
ATAACTATAGCCCGTTCACC+AGG + chr5_4:2162353-2162372 None:intergenic 45.0%
GGCTATAGTTATCGACGACT+TGG - chr5_4:2162361-2162380 Msa0829240:intron 45.0%
TGCAACAGGTGGAACTTTGT+CGG - chr5_4:2162385-2162404 Msa0829240:intron 45.0%
GTGGAATGTGCTTGTGTGAT+TGG - chr5_4:2162571-2162590 Msa0829240:intron 45.0%
CTTCTCCTGTTGTCGATATG+AGG - chr5_4:2163074-2163093 Msa0829240:CDS 45.0%
TTAAGGAGAGTTGGATCTCC+AGG + chr5_4:2163176-2163195 None:intergenic 45.0%
ACACCGTCCCTGAAAAAAGA+AGG + chr5_4:2163304-2163323 None:intergenic 45.0%
!! TAAAATTAAATAAGAAAAAA+AGG + chr5_4:2160299-2160318 None:intergenic 5.0%
!! AAATAAATATAAATAAAGTT+AGG + chr5_4:2161124-2161143 None:intergenic 5.0%
!!! AACTTTATTTATATTTATTT+AGG - chr5_4:2161124-2161143 Msa0829240:intron 5.0%
!!! ATTTTTTATTAAAAATGTTA+AGG + chr5_4:2163193-2163212 None:intergenic 5.0%
!!! ATCAGTTTTGGGAGGGAGTG+AGG - chr5_4:2160125-2160144 Msa0829240:intron 50.0%
!!! TCAGTTTTGGGAGGGAGTGA+GGG - chr5_4:2160126-2160145 Msa0829240:intron 50.0%
TCGGCAAACATTCTGTGTGG+TGG + chr5_4:2160171-2160190 None:intergenic 50.0%
!! GTTTGGTTCTGCAGTTGCGT+TGG - chr5_4:2160805-2160824 Msa0829240:intron 50.0%
TCTGCAGTTGCGTTGGGAAT+TGG - chr5_4:2160812-2160831 Msa0829240:intron 50.0%
AGCTTGCGAGGTTTGCGTAA+AGG + chr5_4:2160851-2160870 None:intergenic 50.0%
TGGGATGGCCCATTTGACAA+CGG - chr5_4:2160986-2161005 Msa0829240:CDS 50.0%
CACCAACCCCGTTGTCAAAT+GGG + chr5_4:2160997-2161016 None:intergenic 50.0%
ACACCAACCCCGTTGTCAAA+TGG + chr5_4:2160998-2161017 None:intergenic 50.0%
! AAAGGCTGTCATGGTCTTGC+TGG - chr5_4:2161360-2161379 Msa0829240:intron 50.0%
! AAGGCTGTCATGGTCTTGCT+GGG - chr5_4:2161361-2161380 Msa0829240:intron 50.0%
! GGAAAGGCCTTGTCCTACTT+TGG - chr5_4:2161393-2161412 Msa0829240:intron 50.0%
!! ATCGACGACTTGGTTGCAAC+AGG - chr5_4:2162371-2162390 Msa0829240:intron 50.0%
ACGTGCTAAGGCTGAAGTAG+TGG - chr5_4:2162552-2162571 Msa0829240:intron 50.0%
TTGTGTGATTGGTGTGCCTG+AGG - chr5_4:2162582-2162601 Msa0829240:intron 50.0%
GATTGGTGTGCCTGAGGTTA+AGG - chr5_4:2162588-2162607 Msa0829240:intron 50.0%
GTGTGCCTGAGGTTAAGGTA+TGG - chr5_4:2162593-2162612 Msa0829240:intron 50.0%
CTGAGCCATACCTTAACCTC+AGG + chr5_4:2162601-2162620 None:intergenic 50.0%
GTAGCCCTCATATCGACAAC+AGG + chr5_4:2163082-2163101 None:intergenic 50.0%
TGTCGATATGAGGGCTACGT+TGG - chr5_4:2163084-2163103 Msa0829240:CDS 50.0%
CAGGGACGGTGTAAACTTCT+TGG - chr5_4:2163312-2163331 Msa0829240:five_prime_UTR 50.0%
GGCTCCACAAGCACATAAAG+TGG + chr5_4:2163342-2163361 None:intergenic 50.0%
! GAGTGACGCTTGCTTGCTGA+TGG - chr5_4:2159975-2159994 Msa0829240:CDS 55.0%
!! TTTTGGGAGGGAGTGAGGGA+GGG - chr5_4:2160130-2160149 Msa0829240:intron 55.0%
!! AGGGACGACTCTGATGGACT+GGG + chr5_4:2160235-2160254 None:intergenic 55.0%
GAAGTGAGGGACGACTCTGA+TGG + chr5_4:2160241-2160260 None:intergenic 55.0%
ACGCAAACCTCGCAAGCTAC+CGG - chr5_4:2160853-2160872 Msa0829240:intron 55.0%
GGGATGGCCCATTTGACAAC+GGG - chr5_4:2160987-2161006 Msa0829240:CDS 55.0%
GGATGGCCCATTTGACAACG+GGG - chr5_4:2160988-2161007 Msa0829240:CDS 55.0%
TGCTGGGACTGTGTGTGGAA+AGG - chr5_4:2161377-2161396 Msa0829240:intron 55.0%
CTATAGCCCGTTCACCAGGT+TGG + chr5_4:2162349-2162368 None:intergenic 55.0%
!! GACGACTTGGTTGCAACAGG+TGG - chr5_4:2162374-2162393 Msa0829240:intron 55.0%
ACAGGTGGAACTTTGTCGGC+AGG - chr5_4:2162389-2162408 Msa0829240:intron 55.0%
! TCCTTTTCCTGACCCTGCCT+TGG - chr5_4:2163146-2163165 Msa0829240:exon 55.0%
ACCAAGGCAGGGTCAGGAAA+AGG + chr5_4:2163150-2163169 None:intergenic 55.0%
TTGGATCTCCAGGCACACCA+AGG + chr5_4:2163166-2163185 None:intergenic 55.0%
! GAATGTAGCGTGTGGTGGGG+TGG - chr5_4:2159953-2159972 Msa0829240:CDS 60.0%
!!! GTTTTGGGAGGGAGTGAGGG+AGG - chr5_4:2160129-2160148 Msa0829240:intron 60.0%
! GAGGGACGACTCTGATGGAC+TGG + chr5_4:2160236-2160255 None:intergenic 60.0%
CGCAAACCTCGCAAGCTACC+GGG - chr5_4:2160854-2160873 Msa0829240:intron 60.0%
! GTTGTACCCGGTAGCTTGCG+AGG + chr5_4:2160863-2160882 None:intergenic 60.0%
GGCCCATTTGACAACGGGGT+TGG - chr5_4:2160992-2161011 Msa0829240:CDS 60.0%
GGTCTTGCTGGGACTGTGTG+TGG - chr5_4:2161372-2161391 Msa0829240:intron 60.0%
AGTGGAATGCCGCAGCACAG+TGG + chr5_4:2162190-2162209 None:intergenic 60.0%
GCGCTGTCCAACCTGGTGAA+CGG - chr5_4:2162339-2162358 Msa0829240:intron 60.0%
CGCTGTCCAACCTGGTGAAC+GGG - chr5_4:2162340-2162359 Msa0829240:intron 60.0%
TCTCCAGGCACACCAAGGCA+GGG + chr5_4:2163161-2163180 None:intergenic 60.0%
ATCTCCAGGCACACCAAGGC+AGG + chr5_4:2163162-2163181 None:intergenic 60.0%
CATGTCGGCGCTGTCCAACC+TGG - chr5_4:2162332-2162351 Msa0829240:intron 65.0%
AGGCACACCAAGGCAGGGTC+AGG + chr5_4:2163156-2163175 None:intergenic 65.0%
! TGACCCTGCCTTGGTGTGCC+TGG - chr5_4:2163155-2163174 Msa0829240:five_prime_UTR 65.0%
TGGGAGGGAGTGAGGGAGGG+AGG - chr5_4:2160133-2160152 Msa0829240:intron 70.0%
GGGAGGGAGTGAGGGAGGGA+GGG - chr5_4:2160134-2160153 Msa0829240:intron 70.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 2159942 2163386 2159942 ID=Msa0829240;Name=Msa0829240
chr5_4 mRNA 2159942 2163386 2159942 ID=Msa0829240-mRNA-1;Parent=Msa0829240;Name=Msa0829240-mRNA-1;_AED=0.32;_eAED=0.32;_QI=238|0.8|0.66|1|0.8|0.83|6|0|201
chr5_4 exon 2159942 2160027 2159942 ID=Msa0829240-mRNA-1:exon:702;Parent=Msa0829240-mRNA-1
chr5_4 exon 2160703 2160777 2160703 ID=Msa0829240-mRNA-1:exon:701;Parent=Msa0829240-mRNA-1
chr5_4 exon 2160903 2161052 2160903 ID=Msa0829240-mRNA-1:exon:700;Parent=Msa0829240-mRNA-1
chr5_4 exon 2162453 2162545 2162453 ID=Msa0829240-mRNA-1:exon:699;Parent=Msa0829240-mRNA-1
chr5_4 exon 2162705 2162815 2162705 ID=Msa0829240-mRNA-1:exon:698;Parent=Msa0829240-mRNA-1
chr5_4 exon 2163058 2163386 2163058 ID=Msa0829240-mRNA-1:exon:697;Parent=Msa0829240-mRNA-1
chr5_4 five_prime_UTR 2163149 2163386 2163149 ID=Msa0829240-mRNA-1:five_prime_utr;Parent=Msa0829240-mRNA-1
chr5_4 CDS 2163058 2163148 2163058 ID=Msa0829240-mRNA-1:cds;Parent=Msa0829240-mRNA-1
chr5_4 CDS 2162705 2162815 2162705 ID=Msa0829240-mRNA-1:cds;Parent=Msa0829240-mRNA-1
chr5_4 CDS 2162453 2162545 2162453 ID=Msa0829240-mRNA-1:cds;Parent=Msa0829240-mRNA-1
chr5_4 CDS 2160903 2161052 2160903 ID=Msa0829240-mRNA-1:cds;Parent=Msa0829240-mRNA-1
chr5_4 CDS 2160703 2160777 2160703 ID=Msa0829240-mRNA-1:cds;Parent=Msa0829240-mRNA-1
chr5_4 CDS 2159942 2160027 2159942 ID=Msa0829240-mRNA-1:cds;Parent=Msa0829240-mRNA-1
Gene Sequence

>Msa0829240

ATGTTTGCCGAAGAAAATGGTCTTAAGGGTGACCCTAGATTGCAACACATCTCCCAGTCCATCAGAGTCGTCCCTCACTTCCCTAAAAATGGAATAATGTTTCAAGACATAACGACATTGTTGTTAGATCACAAGGCGTTTAAAGATACTGTCGATATCTTTGTCGATCGTTACAGAGACATGCACATTTCAGTTGTTGCTGGAATTGAAGCAAGAGGGTTTGTGTTTGGTTCTGCAGTTGCGTTGGGAATTGGTGCAAAGTTTGTTCCTTTACGCAAACCTCGCAAGCTACCGGGTGAAGTATTTTTCGAAAAATATTCTCTAGAATACGGAACTGATTGTTTAGAAATGCATGTCGGCGCTGTCCAACCTGGTGAACGGGCTATAGTTATCGACGACTTGGTTGCAACAGGTGGAACTTTGTCGGCAGGAATAAAACTTTTAGAACGTGCTAAGGCTGAAGTAGTGGAATGTGCTTGTGTGATTGGTGTGCCTGAGGTTAAGGTATGGCTCAGCTTTTCCTTCTTTTTTCAGGGACGGTGTAAACTTCTTGGAAAGCCACTTTATGTGCTTGTGGAGCCACGTCAAGTAGATGAATGCTTTTGA

Protein sequence

>Msa0829240

MFAEENGLKGDPRLQHISQSIRVVPHFPKNGIMFQDITTLLLDHKAFKDTVDIFVDRYRDMHISVVAGIEARGFVFGSAVALGIGAKFVPLRKPRKLPGEVFFEKYSLEYGTDCLEMHVGAVQPGERAIVIDDLVATGGTLSAGIKLLERAKAEVVECACVIGVPEVKVWLSFSFFFQGRCKLLGKPLYVLVEPRQVDECF*