Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0829240 | XP_003603366.2 | 94.527 | 201 | 1 | 1 | 1 | 201 | 1 | 191 | 3.55e-132 | 379 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0829240 | sp|Q9LFP0|APT5_ARATH | 73.367 | 199 | 43 | 1 | 1 | 199 | 1 | 189 | 1.27e-99 | 289 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0829240 | G7JAH8 | 94.527 | 201 | 1 | 1 | 1 | 201 | 1 | 191 | 1.70e-132 | 379 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0476920 | Msa0829240 | 0.891463 | 3.884345e-74 | -8.615850e-47 |
Msa0521290 | Msa0829240 | 0.962515 | 5.720119e-121 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0829240 | MtrunA17_Chr3g0137551 | 94.527 | 201 | 1 | 1 | 1 | 201 | 1 | 191 | 3.27e-136 | 379 |
Msa0829240 | MtrunA17_Chr3g0134721 | 71.585 | 183 | 42 | 1 | 11 | 193 | 70 | 242 | 3.53e-91 | 267 |
Msa0829240 | MtrunA17_Chr5g0399031 | 70.492 | 183 | 44 | 1 | 11 | 193 | 10 | 182 | 4.27e-87 | 254 |
Msa0829240 | MtrunA17_Chr4g0056471 | 66.667 | 183 | 51 | 1 | 11 | 193 | 8 | 180 | 9.44e-82 | 241 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0829240 | AT5G11160.1 | 73.367 | 199 | 43 | 1 | 1 | 199 | 1 | 189 | 1.30e-100 | 289 |
Msa0829240 | AT1G80050.1 | 71.357 | 199 | 47 | 1 | 1 | 199 | 1 | 189 | 2.58e-98 | 283 |
Msa0829240 | AT4G12440.3 | 68.586 | 191 | 49 | 2 | 5 | 195 | 3 | 182 | 6.04e-89 | 259 |
Msa0829240 | AT4G12440.2 | 68.586 | 191 | 49 | 2 | 5 | 195 | 3 | 182 | 6.04e-89 | 259 |
Msa0829240 | AT4G22570.1 | 67.368 | 190 | 52 | 1 | 6 | 195 | 4 | 183 | 2.49e-86 | 253 |
Msa0829240 | AT1G27450.2 | 66.120 | 183 | 52 | 1 | 11 | 193 | 8 | 180 | 2.10e-84 | 248 |
Msa0829240 | AT1G27450.4 | 66.120 | 183 | 52 | 1 | 11 | 193 | 8 | 180 | 2.10e-84 | 248 |
Msa0829240 | AT1G27450.1 | 66.120 | 183 | 52 | 1 | 11 | 193 | 68 | 240 | 1.54e-83 | 248 |
Msa0829240 | AT5G11160.2 | 77.703 | 148 | 33 | 0 | 1 | 148 | 1 | 148 | 9.60e-81 | 238 |
Msa0829240 | AT1G80050.2 | 70.659 | 167 | 39 | 1 | 33 | 199 | 1 | 157 | 3.06e-78 | 231 |
Msa0829240 | AT1G27450.3 | 58.173 | 208 | 52 | 2 | 11 | 193 | 84 | 281 | 2.81e-77 | 233 |
Msa0829240 | AT4G12440.1 | 77.083 | 96 | 21 | 1 | 4 | 99 | 2 | 96 | 8.46e-48 | 152 |
Msa0829240 | AT4G12440.4 | 77.083 | 96 | 21 | 1 | 4 | 99 | 2 | 96 | 8.46e-48 | 152 |
Msa0829240 | AT4G22570.2 | 72.632 | 95 | 26 | 0 | 6 | 100 | 4 | 98 | 2.06e-44 | 144 |
Find 60 sgRNAs with CRISPR-Local
Find 239 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AGAATAAATATAATCAGTTT+TGG | 0.254134 | 5_4:-2163193 | Msa0829240:five_prime_UTR |
CAGGGACGGTGTAAACTTCT+TGG | 0.284373 | 5_4:-2159994 | Msa0829240:CDS |
TGGGAGGGAGTGAGGGAGGG+AGG | 0.301978 | 5_4:-2163173 | Msa0829240:five_prime_UTR |
TGGGAGATGTGTTGCAATCT+AGG | 0.320267 | 5_4:+2163093 | None:intergenic |
CGCTGTCCAACCTGGTGAAC+GGG | 0.371582 | 5_4:-2160966 | Msa0829240:CDS |
GCCGAAGAAAATGGTCTTAA+GGG | 0.373266 | 5_4:-2163120 | Msa0829240:CDS |
TGCCGAAGAAAATGGTCTTA+AGG | 0.403352 | 5_4:-2163121 | Msa0829240:CDS |
TCTGCAGTTGCGTTGGGAAT+TGG | 0.405636 | 5_4:-2162494 | Msa0829240:CDS |
GAAGCAAGAGGGTTTGTGTT+TGG | 0.411897 | 5_4:-2162518 | Msa0829240:CDS |
GATTGGTGTGCCTGAGGTTA+AGG | 0.414050 | 5_4:-2160718 | Msa0829240:CDS |
AGAATGTTTGCCGAAGAAAA+TGG | 0.424560 | 5_4:-2163129 | Msa0829240:CDS |
GTGGAATGTGCTTGTGTGAT+TGG | 0.438632 | 5_4:-2160735 | Msa0829240:CDS |
ATCGACGACTTGGTTGCAAC+AGG | 0.448378 | 5_4:-2160935 | Msa0829240:CDS |
GGGAGGGAGTGAGGGAGGGA+GGG | 0.458138 | 5_4:-2163172 | Msa0829240:five_prime_UTR |
TTTGGTTCTGCAGTTGCGTT+GGG | 0.461360 | 5_4:-2162500 | Msa0829240:CDS |
AACTGCAATGCAATGGCAAT+GGG | 0.462376 | 5_4:+2163269 | None:intergenic |
AGCTTGCGAGGTTTGCGTAA+AGG | 0.464262 | 5_4:+2162458 | None:intergenic |
GAGGGACGACTCTGATGGAC+TGG | 0.472031 | 5_4:+2163073 | None:intergenic |
GCGCTGTCCAACCTGGTGAA+CGG | 0.478342 | 5_4:-2160967 | Msa0829240:CDS |
ACGCAAACCTCGCAAGCTAC+CGG | 0.479212 | 5_4:-2162453 | Msa0829240:CDS |
GTTTGGTTCTGCAGTTGCGT+TGG | 0.491474 | 5_4:-2162501 | Msa0829240:CDS |
TGCAACAGGTGGAACTTTGT+CGG | 0.495035 | 5_4:-2160921 | Msa0829240:CDS |
ATGCACATTTCAGTTGTTGC+TGG | 0.495656 | 5_4:-2162704 | Msa0829240:intron |
GAGTGACGCTTGCTTGCTGA+TGG | 0.500328 | 5_4:-2163331 | Msa0829240:five_prime_UTR |
CAACTGCAATGCAATGGCAA+TGG | 0.524296 | 5_4:+2163268 | None:intergenic |
ACAGGTGGAACTTTGTCGGC+AGG | 0.532728 | 5_4:-2160917 | Msa0829240:CDS |
TAAATATTTGCTCAAAGGAA+AGG | 0.535738 | 5_4:-2163298 | Msa0829240:five_prime_UTR |
AGTAATAAATATTTGCTCAA+AGG | 0.536448 | 5_4:-2163303 | Msa0829240:five_prime_UTR |
GGGAGATGTGTTGCAATCTA+GGG | 0.544429 | 5_4:+2163094 | None:intergenic |
GGCTATAGTTATCGACGACT+TGG | 0.544698 | 5_4:-2160945 | Msa0829240:CDS |
CATGTCGGCGCTGTCCAACC+TGG | 0.547674 | 5_4:-2160974 | Msa0829240:CDS |
CGCAAACCTCGCAAGCTACC+GGG | 0.550896 | 5_4:-2162452 | Msa0829240:intron |
CATTAGAATGTAGCGTGTGG+TGG | 0.552393 | 5_4:-2163358 | Msa0829240:five_prime_UTR |
GAATGTAGCGTGTGGTGGGG+TGG | 0.556798 | 5_4:-2163353 | Msa0829240:five_prime_UTR |
GGCTCCACAAGCACATAAAG+TGG | 0.560359 | 5_4:+2159967 | None:intergenic |
CTGAGCCATACCTTAACCTC+AGG | 0.561630 | 5_4:+2160708 | None:intergenic |
ATAACTATAGCCCGTTCACC+AGG | 0.563626 | 5_4:+2160956 | None:intergenic |
ACGTGCTAAGGCTGAAGTAG+TGG | 0.569286 | 5_4:-2160754 | Msa0829240:CDS |
ATTAGAATGTAGCGTGTGGT+GGG | 0.569665 | 5_4:-2163357 | Msa0829240:five_prime_UTR |
AAAGCCACTTTATGTGCTTG+TGG | 0.574929 | 5_4:-2159971 | Msa0829240:CDS |
GTTGTACCCGGTAGCTTGCG+AGG | 0.575231 | 5_4:+2162446 | None:intergenic |
TCGGCAAACATTCTGTGTGG+TGG | 0.577777 | 5_4:+2163138 | None:intergenic |
GACGACTTGGTTGCAACAGG+TGG | 0.588976 | 5_4:-2160932 | Msa0829240:CDS |
CAATTATGTAGAACGTGCTA+AGG | 0.591327 | 5_4:-2160766 | Msa0829240:intron |
GAAGTGAGGGACGACTCTGA+TGG | 0.595744 | 5_4:+2163068 | None:intergenic |
ATGCAGCAACTGCAATGCAA+TGG | 0.598086 | 5_4:+2163262 | None:intergenic |
TATTTATTCTGTGAAGTGTG+AGG | 0.604185 | 5_4:+2163206 | None:intergenic |
CTATAGCCCGTTCACCAGGT+TGG | 0.604880 | 5_4:+2160960 | None:intergenic |
TTGTGTGATTGGTGTGCCTG+AGG | 0.609251 | 5_4:-2160724 | Msa0829240:CDS |
ATGCAGGAATTGAAGCAAGA+GGG | 0.621946 | 5_4:-2162529 | Msa0829240:intron |
GTGTGCCTGAGGTTAAGGTA+TGG | 0.624449 | 5_4:-2160713 | Msa0829240:CDS |
GACATTGTTGTTAGATCACA+AGG | 0.630489 | 5_4:-2162771 | Msa0829240:CDS |
TTATTCTGTGAAGTGTGAGG+AGG | 0.635065 | 5_4:+2163209 | None:intergenic |
TATGCAGGAATTGAAGCAAG+AGG | 0.643982 | 5_4:-2162530 | Msa0829240:intron |
AGGGACGACTCTGATGGACT+GGG | 0.649098 | 5_4:+2163074 | None:intergenic |
GATTGTTTAGAAATGCATGT+CGG | 0.652967 | 5_4:-2160989 | Msa0829240:CDS |
TCTTCGGCAAACATTCTGTG+TGG | 0.661008 | 5_4:+2163135 | None:intergenic |
TTAGAATGTAGCGTGTGGTG+GGG | 0.677097 | 5_4:-2163356 | Msa0829240:five_prime_UTR |
AAGCATTCATCTACTTGACG+TGG | 0.677392 | 5_4:+2159946 | None:intergenic |
GAGCATTAGAATGTAGCGTG+TGG | 0.693426 | 5_4:-2163361 | Msa0829240:five_prime_UTR |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TTTATTAATAAATAAATAAA+TGG | + | chr5_4:2161328-2161347 | None:intergenic | 0.0% |
!! | AAAAAACTAAGTAATAAAAT+GGG | - | chr5_4:2160424-2160443 | Msa0829240:intron | 10.0% |
!!! | AAAAGAGAAATTTTTTATTT+TGG | - | chr5_4:2160700-2160719 | Msa0829240:intron | 10.0% |
!!! | AAAGAGAAATTTTTTATTTT+GGG | - | chr5_4:2160701-2160720 | Msa0829240:intron | 10.0% |
!! | TTTATTTATATTTATTTAGG+AGG | - | chr5_4:2161127-2161146 | Msa0829240:intron | 10.0% |
!! | TTATTTATATTTATTTAGGA+GGG | - | chr5_4:2161128-2161147 | Msa0829240:intron | 10.0% |
!!! | AATAAACTCAAATAAAATTT+TGG | + | chr5_4:2161190-2161209 | None:intergenic | 10.0% |
!! | TATTTATTAATAAACACTTT+CGG | - | chr5_4:2161334-2161353 | Msa0829240:intron | 10.0% |
!!! | TATTTGTATTTATTCATTTT+TGG | + | chr5_4:2162716-2162735 | None:intergenic | 10.0% |
!!! | ATTTGTATTTATTCATTTTT+TGG | + | chr5_4:2162715-2162734 | None:intergenic | 10.0% |
!!! | AGAATAAATATAATCAGTTT+TGG | - | chr5_4:2160113-2160132 | Msa0829240:intron | 15.0% |
!!! | GAATAAATATAATCAGTTTT+GGG | - | chr5_4:2160114-2160133 | Msa0829240:intron | 15.0% |
!! | ATTAAATAAGAAAAAAAGGA+AGG | + | chr5_4:2160295-2160314 | None:intergenic | 15.0% |
!! | CAAAAAACTAAGTAATAAAA+TGG | - | chr5_4:2160423-2160442 | Msa0829240:intron | 15.0% |
!! | ACAGAAATTAAATAAAAAAG+GGG | + | chr5_4:2160730-2160749 | None:intergenic | 15.0% |
!! | CACAGAAATTAAATAAAAAA+GGG | + | chr5_4:2160731-2160750 | None:intergenic | 15.0% |
!! | TCACAGAAATTAAATAAAAA+AGG | + | chr5_4:2160732-2160751 | None:intergenic | 15.0% |
!!! | ACTTTTTCTTATATTTAGTA+CGG | + | chr5_4:2161034-2161053 | None:intergenic | 15.0% |
!! | TACTAAATATAAGAAAAAGT+TGG | - | chr5_4:2161034-2161053 | Msa0829240:intron | 15.0% |
!! | ACTAAATATAAGAAAAAGTT+GGG | - | chr5_4:2161035-2161054 | Msa0829240:intron | 15.0% |
!! | AATAAAAATGTTGATGTATT+TGG | + | chr5_4:2161099-2161118 | None:intergenic | 15.0% |
!! | TATTTATATTTATTTAGGAG+GGG | - | chr5_4:2161129-2161148 | Msa0829240:intron | 15.0% |
!! | ATTTATTAATAAACACTTTC+GGG | - | chr5_4:2161335-2161354 | Msa0829240:intron | 15.0% |
!!! | TTAAATTTCTATCTTGTTAT+AGG | - | chr5_4:2162852-2162871 | Msa0829240:intron | 15.0% |
!! | TTCAAATAAGATTAATAACA+AGG | + | chr5_4:2163253-2163272 | None:intergenic | 15.0% |
!! | AGTAATAAATATTTGCTCAA+AGG | - | chr5_4:2160003-2160022 | Msa0829240:CDS | 20.0% |
!!! | AGAAAAGAAAACCATTTTTA+GGG | + | chr5_4:2160263-2160282 | None:intergenic | 20.0% |
!!! | AAGAAAAGAAAACCATTTTT+AGG | + | chr5_4:2160264-2160283 | None:intergenic | 20.0% |
!! | TTCTGTGATTTAATGTAATT+AGG | - | chr5_4:2160744-2160763 | Msa0829240:CDS | 20.0% |
!! | TGATTTAATGTAATTAGGTT+TGG | - | chr5_4:2160749-2160768 | Msa0829240:CDS | 20.0% |
!!! | CTTTTTCTTATATTTAGTAC+GGG | + | chr5_4:2161033-2161052 | None:intergenic | 20.0% |
!! | GAGTTTATTCAAAGAATATT+AGG | - | chr5_4:2161201-2161220 | Msa0829240:intron | 20.0% |
!! | GCCAATATATATATACTATT+CGG | - | chr5_4:2161700-2161719 | Msa0829240:intron | 20.0% |
!! | ACCGAATAGTATATATATAT+TGG | + | chr5_4:2161704-2161723 | None:intergenic | 20.0% |
!! | TATATATATACTATTCGGTA+CGG | - | chr5_4:2161705-2161724 | Msa0829240:intron | 20.0% |
!!! | CAATATTTTCAAATTGATCA+TGG | - | chr5_4:2161728-2161747 | Msa0829240:intron | 20.0% |
!! | TAAGTTGTATGTTATATGAT+AGG | - | chr5_4:2161954-2161973 | Msa0829240:intron | 20.0% |
!! | AAGTTGTATGTTATATGATA+GGG | - | chr5_4:2161955-2161974 | Msa0829240:intron | 20.0% |
!! | ACATATACTATTTAACTCAA+AGG | + | chr5_4:2162068-2162087 | None:intergenic | 20.0% |
!! | TGAGTTAAATAGTATATGTT+TGG | - | chr5_4:2162069-2162088 | Msa0829240:intron | 20.0% |
!! | TAAATAGTATATGTTTGGTT+TGG | - | chr5_4:2162074-2162093 | Msa0829240:intron | 20.0% |
!! | AATGAAACATATCAAAGTTT+AGG | + | chr5_4:2162251-2162270 | None:intergenic | 20.0% |
!!! | GAAAAATATTCTCTAGAATA+CGG | - | chr5_4:2162290-2162309 | Msa0829240:intron | 20.0% |
!! | TTATAATTGTTCATTGAATC+TGG | - | chr5_4:2162481-2162500 | Msa0829240:CDS | 20.0% |
!!! | AAGAAAGCATAAAGTATATT+GGG | + | chr5_4:2162515-2162534 | None:intergenic | 20.0% |
!!! | AAAGAAAGCATAAAGTATAT+TGG | + | chr5_4:2162516-2162535 | None:intergenic | 20.0% |
!!! | TGAAATTTCTATCTTGTTAT+AGG | - | chr5_4:2162664-2162683 | Msa0829240:intron | 20.0% |
!!! | AATCTTATTTGAAATCATGA+TGG | - | chr5_4:2163260-2163279 | Msa0829240:five_prime_UTR | 20.0% |
! | TAAATATTTGCTCAAAGGAA+AGG | - | chr5_4:2160008-2160027 | Msa0829240:CDS | 25.0% |
!!! | TAAATATAATCAGTTTTGGG+AGG | - | chr5_4:2160117-2160136 | Msa0829240:intron | 25.0% |
!!! | AAATATAATCAGTTTTGGGA+GGG | - | chr5_4:2160118-2160137 | Msa0829240:intron | 25.0% |
!! | TTAATGTAATTAGGTTTGGT+TGG | - | chr5_4:2160753-2160772 | Msa0829240:CDS | 25.0% |
!! | AGTAGTACTAAACTTTTATG+TGG | - | chr5_4:2160961-2160980 | Msa0829240:CDS | 25.0% |
!! | TACTAAACTTTTATGTGGAA+TGG | - | chr5_4:2160966-2160985 | Msa0829240:CDS | 25.0% |
!! | ACTAAACTTTTATGTGGAAT+GGG | - | chr5_4:2160967-2160986 | Msa0829240:CDS | 25.0% |
! | TGATGTATGAATATTCAATG+TGG | - | chr5_4:2161555-2161574 | Msa0829240:intron | 25.0% |
! | GATGTATGAATATTCAATGT+GGG | - | chr5_4:2161556-2161575 | Msa0829240:intron | 25.0% |
! | TGATTCATACAATTTCAATC+AGG | + | chr5_4:2161859-2161878 | None:intergenic | 25.0% |
! | TTCTGTTTAACCAAACTAAT+TGG | - | chr5_4:2161918-2161937 | Msa0829240:intron | 25.0% |
! | TCTGTTTAACCAAACTAATT+GGG | - | chr5_4:2161919-2161938 | Msa0829240:intron | 25.0% |
!! | ATGTTATATGATAGGGATTT+TGG | - | chr5_4:2161962-2161981 | Msa0829240:intron | 25.0% |
! | AAATCATCGTCAATAATCAT+TGG | + | chr5_4:2162124-2162143 | None:intergenic | 25.0% |
!! | CTTTGATATGTTTCATTTTC+AGG | - | chr5_4:2162254-2162273 | Msa0829240:intron | 25.0% |
!! | AGAAAGCATAAAGTATATTG+GGG | + | chr5_4:2162514-2162533 | None:intergenic | 25.0% |
! | TAACAAGATAGAAATTTCAG+AGG | + | chr5_4:2162663-2162682 | None:intergenic | 25.0% |
!! | AAACAAATTTGAAGTCCAAT+AGG | + | chr5_4:2162786-2162805 | None:intergenic | 25.0% |
! | TATGTACAACAAATTTGAAG+TGG | + | chr5_4:2162976-2162995 | None:intergenic | 25.0% |
! | TTAAAAATGTTAAGGAGAGT+TGG | + | chr5_4:2163185-2163204 | None:intergenic | 25.0% |
TATTTATTCTGTGAAGTGTG+AGG | + | chr5_4:2160103-2160122 | None:intergenic | 30.0% | |
AGAAAAAAAGGAAGGAAAGA+AGG | + | chr5_4:2160287-2160306 | None:intergenic | 30.0% | |
ACTAAGTAATAAAATGGGTC+TGG | - | chr5_4:2160429-2160448 | Msa0829240:intron | 30.0% | |
CTAAGTAATAAAATGGGTCT+GGG | - | chr5_4:2160430-2160449 | Msa0829240:intron | 30.0% | |
! | CACAAAAATGTGTAATTTGC+AGG | - | chr5_4:2160491-2160510 | Msa0829240:intron | 30.0% |
ACAAAAAAAGTAGTGCATGA+GGG | + | chr5_4:2160647-2160666 | None:intergenic | 30.0% | |
AACAAAAAAAGTAGTGCATG+AGG | + | chr5_4:2160648-2160667 | None:intergenic | 30.0% | |
TTTCTTATATTTAGTACGGG+AGG | + | chr5_4:2161030-2161049 | None:intergenic | 30.0% | |
TATATTTATTTAGGAGGGGA+TGG | - | chr5_4:2161133-2161152 | Msa0829240:intron | 30.0% | |
AATAAACACTTTCGGGATAA+AGG | - | chr5_4:2161342-2161361 | Msa0829240:intron | 30.0% | |
TTCCATCACATAAAGTCAAT+TGG | - | chr5_4:2161419-2161438 | Msa0829240:intron | 30.0% | |
ACTTTCCTCTTAGATATTGT+GGG | + | chr5_4:2161475-2161494 | None:intergenic | 30.0% | |
! | CATCAAATTGATGATCAGAT+TGG | - | chr5_4:2161754-2161773 | Msa0829240:intron | 30.0% |
TTCATACAATTTCAATCAGG+AGG | + | chr5_4:2161856-2161875 | None:intergenic | 30.0% | |
TGAAATTGTATGAATCAACC+AGG | - | chr5_4:2161862-2161881 | Msa0829240:intron | 30.0% | |
CTGTTTAACCAAACTAATTG+GGG | - | chr5_4:2161920-2161939 | Msa0829240:intron | 30.0% | |
AAATTAAGCCCCAATTAGTT+TGG | + | chr5_4:2161931-2161950 | None:intergenic | 30.0% | |
AAACTAATTGGGGCTTAATT+TGG | - | chr5_4:2161930-2161949 | Msa0829240:intron | 30.0% | |
TAGATACGTTCTACAATTCA+GGG | + | chr5_4:2162155-2162174 | None:intergenic | 30.0% | |
ATAGATACGTTCTACAATTC+AGG | + | chr5_4:2162156-2162175 | None:intergenic | 30.0% | |
GATTGTTTAGAAATGCATGT+CGG | - | chr5_4:2162317-2162336 | Msa0829240:intron | 30.0% | |
!! | AGGAATAAAACTTTTAGGTG+TGG | - | chr5_4:2162409-2162428 | Msa0829240:intron | 30.0% |
ATAAGTCAAAAAATGACGCA+GGG | + | chr5_4:2162465-2162484 | None:intergenic | 30.0% | |
TATAAGTCAAAAAATGACGC+AGG | + | chr5_4:2162466-2162485 | None:intergenic | 30.0% | |
AGGTACTCTTAAAAGCTTAA+AGG | - | chr5_4:2162684-2162703 | Msa0829240:intron | 30.0% | |
! | CTGAATTATTGATAGCCTAT+TGG | - | chr5_4:2162768-2162787 | Msa0829240:CDS | 30.0% |
! | GTTAAGACCTTTAAGCTTTT+AGG | + | chr5_4:2162882-2162901 | None:intergenic | 30.0% |
! | CAACAAATTTGAAGTGGAAT+AGG | + | chr5_4:2162970-2162989 | None:intergenic | 30.0% |
! | ATATCCTTATAGACTTGCTT+AGG | - | chr5_4:2163032-2163051 | Msa0829240:intron | 30.0% |
! | TATCCTTATAGACTTGCTTA+GGG | - | chr5_4:2163033-2163052 | Msa0829240:intron | 30.0% |
!!! | TAATGAAGCCTTCTTTTTTC+AGG | - | chr5_4:2163293-2163312 | Msa0829240:five_prime_UTR | 30.0% |
!!! | AATGAAGCCTTCTTTTTTCA+GGG | - | chr5_4:2163294-2163313 | Msa0829240:five_prime_UTR | 30.0% |
AGAATGTTTGCCGAAGAAAA+TGG | - | chr5_4:2160177-2160196 | Msa0829240:intron | 35.0% | |
! | ACCCTTAAGACCATTTTCTT+CGG | + | chr5_4:2160190-2160209 | None:intergenic | 35.0% |
!! | AACCATTTTTAGGGAAGTGA+GGG | + | chr5_4:2160254-2160273 | None:intergenic | 35.0% |
!! | AAACCATTTTTAGGGAAGTG+AGG | + | chr5_4:2160255-2160274 | None:intergenic | 35.0% |
TCATGCAGTTTCTATCAGAA+TGG | - | chr5_4:2160355-2160374 | Msa0829240:intron | 35.0% | |
ATAAAGAGTTGCAGATCTGT+TGG | + | chr5_4:2160389-2160408 | None:intergenic | 35.0% | |
! | GACATTGTTGTTAGATCACA+AGG | - | chr5_4:2160535-2160554 | Msa0829240:intron | 35.0% |
ATGAACAGAAATGTTGTACC+CGG | + | chr5_4:2160875-2160894 | None:intergenic | 35.0% | |
! | AACTTTTATGTGGAATGGGA+TGG | - | chr5_4:2160971-2160990 | Msa0829240:CDS | 35.0% |
TTATATTTAGTACGGGAGGA+GGG | + | chr5_4:2161026-2161045 | None:intergenic | 35.0% | |
ATGTGATGTTCATTACTGTG+TGG | - | chr5_4:2161239-2161258 | Msa0829240:intron | 35.0% | |
! | AGCCAATTGACTTTATGTGA+TGG | + | chr5_4:2161424-2161443 | None:intergenic | 35.0% |
!! | ATATTGTGGGCTAGTTAACT+AGG | + | chr5_4:2161462-2161481 | None:intergenic | 35.0% |
CACTTTCCTCTTAGATATTG+TGG | + | chr5_4:2161476-2161495 | None:intergenic | 35.0% | |
AGTGAAACAAATGTATGTGC+TGG | - | chr5_4:2161620-2161639 | Msa0829240:intron | 35.0% | |
! | TTTTTCCTCTTGATCTGCAT+TGG | - | chr5_4:2161669-2161688 | Msa0829240:intron | 35.0% |
! | TTTTCCTCTTGATCTGCATT+GGG | - | chr5_4:2161670-2161689 | Msa0829240:intron | 35.0% |
AATTGTATGAATCAACCAGG+TGG | - | chr5_4:2161865-2161884 | Msa0829240:intron | 35.0% | |
TGGAGGTAAACGTATCTAAT+TGG | - | chr5_4:2161885-2161904 | Msa0829240:intron | 35.0% | |
TTGATTGAACTTAAGCACAC+TGG | + | chr5_4:2162002-2162021 | None:intergenic | 35.0% | |
!! | TATATGTTTGGTTTGGTAGC+TGG | - | chr5_4:2162081-2162100 | Msa0829240:intron | 35.0% |
! | TCGGCAGGAATAAAACTTTT+AGG | - | chr5_4:2162404-2162423 | Msa0829240:intron | 35.0% |
TAAGTCAAAAAATGACGCAG+GGG | + | chr5_4:2162464-2162483 | None:intergenic | 35.0% | |
! | TTGTTCATTGAATCTGGTTC+TGG | - | chr5_4:2162487-2162506 | Msa0829240:CDS | 35.0% |
CTTAGCACGTTCTACATAAT+TGG | + | chr5_4:2162542-2162561 | None:intergenic | 35.0% | |
CAATTATGTAGAACGTGCTA+AGG | - | chr5_4:2162540-2162559 | Msa0829240:intron | 35.0% | |
AGGTACTCCTAAAAGCTTAA+AGG | - | chr5_4:2162872-2162891 | Msa0829240:intron | 35.0% | |
ATTACTTGTTCACTTGTGCT+CGG | + | chr5_4:2163014-2163033 | None:intergenic | 35.0% | |
TAACCCTAAGCAAGTCTATA+AGG | + | chr5_4:2163039-2163058 | None:intergenic | 35.0% | |
ATTAGAATGTAGCGTGTGGT+GGG | - | chr5_4:2159949-2159968 | Msa0829240:CDS | 40.0% | |
AACTGCAATGCAATGGCAAT+GGG | + | chr5_4:2160040-2160059 | None:intergenic | 40.0% | |
TTATTCTGTGAAGTGTGAGG+AGG | + | chr5_4:2160100-2160119 | None:intergenic | 40.0% | |
! | TGCCGAAGAAAATGGTCTTA+AGG | - | chr5_4:2160185-2160204 | Msa0829240:intron | 40.0% |
! | GCCGAAGAAAATGGTCTTAA+GGG | - | chr5_4:2160186-2160205 | Msa0829240:intron | 40.0% |
ATGCACATTTCAGTTGTTGC+TGG | - | chr5_4:2160602-2160621 | Msa0829240:intron | 40.0% | |
CATTTCAGTTGTTGCTGGTA+TGG | - | chr5_4:2160607-2160626 | Msa0829240:intron | 40.0% | |
AAAAAGTAGTGCATGAGGGA+GGG | + | chr5_4:2160643-2160662 | None:intergenic | 40.0% | |
AAAAAAGTAGTGCATGAGGG+AGG | + | chr5_4:2160644-2160663 | None:intergenic | 40.0% | |
! | ATTAGGTTTGGTTGGTATGC+AGG | - | chr5_4:2160761-2160780 | Msa0829240:intron | 40.0% |
TATGCAGGAATTGAAGCAAG+AGG | - | chr5_4:2160776-2160795 | Msa0829240:intron | 40.0% | |
ATGCAGGAATTGAAGCAAGA+GGG | - | chr5_4:2160777-2160796 | Msa0829240:intron | 40.0% | |
CAAGTTTCAGCAGCTAAAAG+TGG | + | chr5_4:2160939-2160958 | None:intergenic | 40.0% | |
CTTATATTTAGTACGGGAGG+AGG | + | chr5_4:2161027-2161046 | None:intergenic | 40.0% | |
! | AGGGGATGGAGTATTATCTT+TGG | - | chr5_4:2161147-2161166 | Msa0829240:intron | 40.0% |
TGATGTTCATTACTGTGTGG+AGG | - | chr5_4:2161242-2161261 | Msa0829240:intron | 40.0% | |
! | TGTGATGGAACAACCAAAGT+AGG | + | chr5_4:2161409-2161428 | None:intergenic | 40.0% |
ACTAGCCCACAATATCTAAG+AGG | - | chr5_4:2161467-2161486 | Msa0829240:intron | 40.0% | |
! | GCTGGTATTGTTGCTTAGTT+TGG | - | chr5_4:2161638-2161657 | Msa0829240:intron | 40.0% |
AGGAGTGATCAAGTTACTTC+AGG | + | chr5_4:2161836-2161855 | None:intergenic | 40.0% | |
! | GTCTTTGTTTGCATTCACAG+TGG | + | chr5_4:2162208-2162227 | None:intergenic | 40.0% |
TTACTTGTTCACTTGTGCTC+GGG | + | chr5_4:2163013-2163032 | None:intergenic | 40.0% | |
TTCTCCTGTTGTCGATATGA+GGG | - | chr5_4:2163075-2163094 | Msa0829240:CDS | 40.0% | |
ATCAATGATGTGCGGTGTAA+AGG | + | chr5_4:2163127-2163146 | None:intergenic | 40.0% | |
GGAAAAGGATCAATGATGTG+CGG | + | chr5_4:2163135-2163154 | None:intergenic | 40.0% | |
!!! | AAGCCTTCTTTTTTCAGGGA+CGG | - | chr5_4:2163298-2163317 | Msa0829240:five_prime_UTR | 40.0% |
! | AAAGCCACTTTATGTGCTTG+TGG | - | chr5_4:2163335-2163354 | Msa0829240:five_prime_UTR | 40.0% |
AAGCATTCATCTACTTGACG+TGG | + | chr5_4:2163363-2163382 | None:intergenic | 40.0% | |
GAGCATTAGAATGTAGCGTG+TGG | - | chr5_4:2159945-2159964 | Msa0829240:CDS | 45.0% | |
CATTAGAATGTAGCGTGTGG+TGG | - | chr5_4:2159948-2159967 | Msa0829240:CDS | 45.0% | |
TTAGAATGTAGCGTGTGGTG+GGG | - | chr5_4:2159950-2159969 | Msa0829240:CDS | 45.0% | |
CAACTGCAATGCAATGGCAA+TGG | + | chr5_4:2160041-2160060 | None:intergenic | 45.0% | |
ATGCAGCAACTGCAATGCAA+TGG | + | chr5_4:2160047-2160066 | None:intergenic | 45.0% | |
TCTTCGGCAAACATTCTGTG+TGG | + | chr5_4:2160174-2160193 | None:intergenic | 45.0% | |
GGGAGATGTGTTGCAATCTA+GGG | + | chr5_4:2160215-2160234 | None:intergenic | 45.0% | |
TGGGAGATGTGTTGCAATCT+AGG | + | chr5_4:2160216-2160235 | None:intergenic | 45.0% | |
GTCCCTCACTTCCCTAAAAA+TGG | - | chr5_4:2160249-2160268 | Msa0829240:intron | 45.0% | |
!! | CTGGGTGTTTTTGTCTGTGT+TGG | - | chr5_4:2160448-2160467 | Msa0829240:intron | 45.0% |
GAAGCAAGAGGGTTTGTGTT+TGG | - | chr5_4:2160788-2160807 | Msa0829240:intron | 45.0% | |
!! | TTTGGTTCTGCAGTTGCGTT+GGG | - | chr5_4:2160806-2160825 | Msa0829240:intron | 45.0% |
TTTCGGGATAAAGGCTGTCA+TGG | - | chr5_4:2161351-2161370 | Msa0829240:intron | 45.0% | |
GGAACAACCAAAGTAGGACA+AGG | + | chr5_4:2161403-2161422 | None:intergenic | 45.0% | |
TTGACCCAATGCAGATCAAG+AGG | + | chr5_4:2161677-2161696 | None:intergenic | 45.0% | |
TGTATGAATCAACCAGGTGG+AGG | - | chr5_4:2161868-2161887 | Msa0829240:intron | 45.0% | |
TAGATACGTTTACCTCCACC+TGG | + | chr5_4:2161883-2161902 | None:intergenic | 45.0% | |
TGAGTTATTCCACTGTGCTG+CGG | - | chr5_4:2162178-2162197 | Msa0829240:intron | 45.0% | |
ATAACTATAGCCCGTTCACC+AGG | + | chr5_4:2162353-2162372 | None:intergenic | 45.0% | |
GGCTATAGTTATCGACGACT+TGG | - | chr5_4:2162361-2162380 | Msa0829240:intron | 45.0% | |
TGCAACAGGTGGAACTTTGT+CGG | - | chr5_4:2162385-2162404 | Msa0829240:intron | 45.0% | |
GTGGAATGTGCTTGTGTGAT+TGG | - | chr5_4:2162571-2162590 | Msa0829240:intron | 45.0% | |
CTTCTCCTGTTGTCGATATG+AGG | - | chr5_4:2163074-2163093 | Msa0829240:CDS | 45.0% | |
TTAAGGAGAGTTGGATCTCC+AGG | + | chr5_4:2163176-2163195 | None:intergenic | 45.0% | |
ACACCGTCCCTGAAAAAAGA+AGG | + | chr5_4:2163304-2163323 | None:intergenic | 45.0% | |
!! | TAAAATTAAATAAGAAAAAA+AGG | + | chr5_4:2160299-2160318 | None:intergenic | 5.0% |
!! | AAATAAATATAAATAAAGTT+AGG | + | chr5_4:2161124-2161143 | None:intergenic | 5.0% |
!!! | AACTTTATTTATATTTATTT+AGG | - | chr5_4:2161124-2161143 | Msa0829240:intron | 5.0% |
!!! | ATTTTTTATTAAAAATGTTA+AGG | + | chr5_4:2163193-2163212 | None:intergenic | 5.0% |
!!! | ATCAGTTTTGGGAGGGAGTG+AGG | - | chr5_4:2160125-2160144 | Msa0829240:intron | 50.0% |
!!! | TCAGTTTTGGGAGGGAGTGA+GGG | - | chr5_4:2160126-2160145 | Msa0829240:intron | 50.0% |
TCGGCAAACATTCTGTGTGG+TGG | + | chr5_4:2160171-2160190 | None:intergenic | 50.0% | |
!! | GTTTGGTTCTGCAGTTGCGT+TGG | - | chr5_4:2160805-2160824 | Msa0829240:intron | 50.0% |
TCTGCAGTTGCGTTGGGAAT+TGG | - | chr5_4:2160812-2160831 | Msa0829240:intron | 50.0% | |
AGCTTGCGAGGTTTGCGTAA+AGG | + | chr5_4:2160851-2160870 | None:intergenic | 50.0% | |
TGGGATGGCCCATTTGACAA+CGG | - | chr5_4:2160986-2161005 | Msa0829240:CDS | 50.0% | |
CACCAACCCCGTTGTCAAAT+GGG | + | chr5_4:2160997-2161016 | None:intergenic | 50.0% | |
ACACCAACCCCGTTGTCAAA+TGG | + | chr5_4:2160998-2161017 | None:intergenic | 50.0% | |
! | AAAGGCTGTCATGGTCTTGC+TGG | - | chr5_4:2161360-2161379 | Msa0829240:intron | 50.0% |
! | AAGGCTGTCATGGTCTTGCT+GGG | - | chr5_4:2161361-2161380 | Msa0829240:intron | 50.0% |
! | GGAAAGGCCTTGTCCTACTT+TGG | - | chr5_4:2161393-2161412 | Msa0829240:intron | 50.0% |
!! | ATCGACGACTTGGTTGCAAC+AGG | - | chr5_4:2162371-2162390 | Msa0829240:intron | 50.0% |
ACGTGCTAAGGCTGAAGTAG+TGG | - | chr5_4:2162552-2162571 | Msa0829240:intron | 50.0% | |
TTGTGTGATTGGTGTGCCTG+AGG | - | chr5_4:2162582-2162601 | Msa0829240:intron | 50.0% | |
GATTGGTGTGCCTGAGGTTA+AGG | - | chr5_4:2162588-2162607 | Msa0829240:intron | 50.0% | |
GTGTGCCTGAGGTTAAGGTA+TGG | - | chr5_4:2162593-2162612 | Msa0829240:intron | 50.0% | |
CTGAGCCATACCTTAACCTC+AGG | + | chr5_4:2162601-2162620 | None:intergenic | 50.0% | |
GTAGCCCTCATATCGACAAC+AGG | + | chr5_4:2163082-2163101 | None:intergenic | 50.0% | |
TGTCGATATGAGGGCTACGT+TGG | - | chr5_4:2163084-2163103 | Msa0829240:CDS | 50.0% | |
CAGGGACGGTGTAAACTTCT+TGG | - | chr5_4:2163312-2163331 | Msa0829240:five_prime_UTR | 50.0% | |
GGCTCCACAAGCACATAAAG+TGG | + | chr5_4:2163342-2163361 | None:intergenic | 50.0% | |
! | GAGTGACGCTTGCTTGCTGA+TGG | - | chr5_4:2159975-2159994 | Msa0829240:CDS | 55.0% |
!! | TTTTGGGAGGGAGTGAGGGA+GGG | - | chr5_4:2160130-2160149 | Msa0829240:intron | 55.0% |
!! | AGGGACGACTCTGATGGACT+GGG | + | chr5_4:2160235-2160254 | None:intergenic | 55.0% |
GAAGTGAGGGACGACTCTGA+TGG | + | chr5_4:2160241-2160260 | None:intergenic | 55.0% | |
ACGCAAACCTCGCAAGCTAC+CGG | - | chr5_4:2160853-2160872 | Msa0829240:intron | 55.0% | |
GGGATGGCCCATTTGACAAC+GGG | - | chr5_4:2160987-2161006 | Msa0829240:CDS | 55.0% | |
GGATGGCCCATTTGACAACG+GGG | - | chr5_4:2160988-2161007 | Msa0829240:CDS | 55.0% | |
TGCTGGGACTGTGTGTGGAA+AGG | - | chr5_4:2161377-2161396 | Msa0829240:intron | 55.0% | |
CTATAGCCCGTTCACCAGGT+TGG | + | chr5_4:2162349-2162368 | None:intergenic | 55.0% | |
!! | GACGACTTGGTTGCAACAGG+TGG | - | chr5_4:2162374-2162393 | Msa0829240:intron | 55.0% |
ACAGGTGGAACTTTGTCGGC+AGG | - | chr5_4:2162389-2162408 | Msa0829240:intron | 55.0% | |
! | TCCTTTTCCTGACCCTGCCT+TGG | - | chr5_4:2163146-2163165 | Msa0829240:exon | 55.0% |
ACCAAGGCAGGGTCAGGAAA+AGG | + | chr5_4:2163150-2163169 | None:intergenic | 55.0% | |
TTGGATCTCCAGGCACACCA+AGG | + | chr5_4:2163166-2163185 | None:intergenic | 55.0% | |
! | GAATGTAGCGTGTGGTGGGG+TGG | - | chr5_4:2159953-2159972 | Msa0829240:CDS | 60.0% |
!!! | GTTTTGGGAGGGAGTGAGGG+AGG | - | chr5_4:2160129-2160148 | Msa0829240:intron | 60.0% |
! | GAGGGACGACTCTGATGGAC+TGG | + | chr5_4:2160236-2160255 | None:intergenic | 60.0% |
CGCAAACCTCGCAAGCTACC+GGG | - | chr5_4:2160854-2160873 | Msa0829240:intron | 60.0% | |
! | GTTGTACCCGGTAGCTTGCG+AGG | + | chr5_4:2160863-2160882 | None:intergenic | 60.0% |
GGCCCATTTGACAACGGGGT+TGG | - | chr5_4:2160992-2161011 | Msa0829240:CDS | 60.0% | |
GGTCTTGCTGGGACTGTGTG+TGG | - | chr5_4:2161372-2161391 | Msa0829240:intron | 60.0% | |
AGTGGAATGCCGCAGCACAG+TGG | + | chr5_4:2162190-2162209 | None:intergenic | 60.0% | |
GCGCTGTCCAACCTGGTGAA+CGG | - | chr5_4:2162339-2162358 | Msa0829240:intron | 60.0% | |
CGCTGTCCAACCTGGTGAAC+GGG | - | chr5_4:2162340-2162359 | Msa0829240:intron | 60.0% | |
TCTCCAGGCACACCAAGGCA+GGG | + | chr5_4:2163161-2163180 | None:intergenic | 60.0% | |
ATCTCCAGGCACACCAAGGC+AGG | + | chr5_4:2163162-2163181 | None:intergenic | 60.0% | |
CATGTCGGCGCTGTCCAACC+TGG | - | chr5_4:2162332-2162351 | Msa0829240:intron | 65.0% | |
AGGCACACCAAGGCAGGGTC+AGG | + | chr5_4:2163156-2163175 | None:intergenic | 65.0% | |
! | TGACCCTGCCTTGGTGTGCC+TGG | - | chr5_4:2163155-2163174 | Msa0829240:five_prime_UTR | 65.0% |
TGGGAGGGAGTGAGGGAGGG+AGG | - | chr5_4:2160133-2160152 | Msa0829240:intron | 70.0% | |
GGGAGGGAGTGAGGGAGGGA+GGG | - | chr5_4:2160134-2160153 | Msa0829240:intron | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5_4 | gene | 2159942 | 2163386 | 2159942 | ID=Msa0829240;Name=Msa0829240 |
chr5_4 | mRNA | 2159942 | 2163386 | 2159942 | ID=Msa0829240-mRNA-1;Parent=Msa0829240;Name=Msa0829240-mRNA-1;_AED=0.32;_eAED=0.32;_QI=238|0.8|0.66|1|0.8|0.83|6|0|201 |
chr5_4 | exon | 2159942 | 2160027 | 2159942 | ID=Msa0829240-mRNA-1:exon:702;Parent=Msa0829240-mRNA-1 |
chr5_4 | exon | 2160703 | 2160777 | 2160703 | ID=Msa0829240-mRNA-1:exon:701;Parent=Msa0829240-mRNA-1 |
chr5_4 | exon | 2160903 | 2161052 | 2160903 | ID=Msa0829240-mRNA-1:exon:700;Parent=Msa0829240-mRNA-1 |
chr5_4 | exon | 2162453 | 2162545 | 2162453 | ID=Msa0829240-mRNA-1:exon:699;Parent=Msa0829240-mRNA-1 |
chr5_4 | exon | 2162705 | 2162815 | 2162705 | ID=Msa0829240-mRNA-1:exon:698;Parent=Msa0829240-mRNA-1 |
chr5_4 | exon | 2163058 | 2163386 | 2163058 | ID=Msa0829240-mRNA-1:exon:697;Parent=Msa0829240-mRNA-1 |
chr5_4 | five_prime_UTR | 2163149 | 2163386 | 2163149 | ID=Msa0829240-mRNA-1:five_prime_utr;Parent=Msa0829240-mRNA-1 |
chr5_4 | CDS | 2163058 | 2163148 | 2163058 | ID=Msa0829240-mRNA-1:cds;Parent=Msa0829240-mRNA-1 |
chr5_4 | CDS | 2162705 | 2162815 | 2162705 | ID=Msa0829240-mRNA-1:cds;Parent=Msa0829240-mRNA-1 |
chr5_4 | CDS | 2162453 | 2162545 | 2162453 | ID=Msa0829240-mRNA-1:cds;Parent=Msa0829240-mRNA-1 |
chr5_4 | CDS | 2160903 | 2161052 | 2160903 | ID=Msa0829240-mRNA-1:cds;Parent=Msa0829240-mRNA-1 |
chr5_4 | CDS | 2160703 | 2160777 | 2160703 | ID=Msa0829240-mRNA-1:cds;Parent=Msa0829240-mRNA-1 |
chr5_4 | CDS | 2159942 | 2160027 | 2159942 | ID=Msa0829240-mRNA-1:cds;Parent=Msa0829240-mRNA-1 |
Gene Sequence |
Protein sequence |