AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0521290


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0521290 MtrunA17_Chr3g0137551 94.527 201 1 1 1 201 1 191 3.27e-136 379
Msa0521290 MtrunA17_Chr3g0134721 71.585 183 42 1 11 193 70 242 3.53e-91 267
Msa0521290 MtrunA17_Chr5g0399031 70.492 183 44 1 11 193 10 182 4.27e-87 254
Msa0521290 MtrunA17_Chr4g0056471 66.667 183 51 1 11 193 8 180 9.44e-82 241
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0521290 AT5G11160.1 73.367 199 43 1 1 199 1 189 1.30e-100 289
Msa0521290 AT1G80050.1 71.357 199 47 1 1 199 1 189 2.58e-98 283
Msa0521290 AT4G12440.3 68.586 191 49 2 5 195 3 182 6.04e-89 259
Msa0521290 AT4G12440.2 68.586 191 49 2 5 195 3 182 6.04e-89 259
Msa0521290 AT4G22570.1 67.368 190 52 1 6 195 4 183 2.49e-86 253
Msa0521290 AT1G27450.2 66.120 183 52 1 11 193 8 180 2.10e-84 248
Msa0521290 AT1G27450.4 66.120 183 52 1 11 193 8 180 2.10e-84 248
Msa0521290 AT1G27450.1 66.120 183 52 1 11 193 68 240 1.54e-83 248
Msa0521290 AT5G11160.2 77.703 148 33 0 1 148 1 148 9.60e-81 238
Msa0521290 AT1G80050.2 70.659 167 39 1 33 199 1 157 3.06e-78 231
Msa0521290 AT1G27450.3 58.173 208 52 2 11 193 84 281 2.81e-77 233
Msa0521290 AT4G12440.1 77.083 96 21 1 4 99 2 96 8.46e-48 152
Msa0521290 AT4G12440.4 77.083 96 21 1 4 99 2 96 8.46e-48 152
Msa0521290 AT4G22570.2 72.632 95 26 0 6 100 4 98 2.06e-44 144

Find 60 sgRNAs with CRISPR-Local

Find 237 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAATAAATATAATCAGTTT+TGG 0.254134 3_4:-73953857 Msa0521290:five_prime_UTR
CAGGGACGGTGTAAACTTCT+TGG 0.284373 3_4:-73950662 Msa0521290:CDS
TGGGAGGGAGTGAGGGAGGG+AGG 0.301978 3_4:-73953837 Msa0521290:five_prime_UTR
TGGGAGATGTGTTGCAATCT+AGG 0.320267 3_4:+73953757 None:intergenic
CGCTGTCCAACCTGGTGAAC+GGG 0.371582 3_4:-73951634 Msa0521290:CDS
GCCGAAGAAAATGGTCTTAA+GGG 0.373266 3_4:-73953784 Msa0521290:CDS
TGCCGAAGAAAATGGTCTTA+AGG 0.403352 3_4:-73953785 Msa0521290:CDS
TCTGCAGTTGCGTTGGGAAT+TGG 0.405636 3_4:-73953168 Msa0521290:CDS
GAAGCAAGAGGGTTTGTGTT+TGG 0.411897 3_4:-73953192 Msa0521290:CDS
GATTGGTGTGCCTGAGGTTA+AGG 0.414050 3_4:-73951386 Msa0521290:CDS
AGAATGTTTGCCGAAGAAAA+TGG 0.424560 3_4:-73953793 Msa0521290:CDS
GTGGAATGTGCTTGTGTGAT+TGG 0.438632 3_4:-73951403 Msa0521290:CDS
ATCGACGACTTGGTTGCAAC+AGG 0.448378 3_4:-73951603 Msa0521290:CDS
GGGAGGGAGTGAGGGAGGGA+GGG 0.458138 3_4:-73953836 Msa0521290:five_prime_UTR
TTTGGTTCTGCAGTTGCGTT+GGG 0.461360 3_4:-73953174 Msa0521290:CDS
AGCTTGCGAGGTTTGCGTAA+AGG 0.464262 3_4:+73953132 None:intergenic
GAGGGACGACTCTGATGGAC+TGG 0.472031 3_4:+73953737 None:intergenic
GCGCTGTCCAACCTGGTGAA+CGG 0.478342 3_4:-73951635 Msa0521290:CDS
ACGCAAACCTCGCAAGCTAC+CGG 0.479212 3_4:-73953127 Msa0521290:CDS
GTTTGGTTCTGCAGTTGCGT+TGG 0.491474 3_4:-73953175 Msa0521290:CDS
TGCAACAGGTGGAACTTTGT+CGG 0.495035 3_4:-73951589 Msa0521290:CDS
ATGCACATTTCAGTTGTTGC+TGG 0.495656 3_4:-73953378 Msa0521290:intron
GAGTGACGCTTGCTTGCTGA+TGG 0.500328 3_4:-73953995 Msa0521290:five_prime_UTR
AACTGCAATGCAATGGCAAT+GGG 0.513149 3_4:+73953933 None:intergenic
ACAGGTGGAACTTTGTCGGC+AGG 0.532728 3_4:-73951585 Msa0521290:CDS
TAAATATTTGCTCAAAGGAA+AGG 0.535738 3_4:-73953962 Msa0521290:five_prime_UTR
AGTAATAAATATTTGCTCAA+AGG 0.536448 3_4:-73953967 Msa0521290:five_prime_UTR
GGGAGATGTGTTGCAATCTA+GGG 0.544429 3_4:+73953758 None:intergenic
GGCTATAGTTATCGACGACT+TGG 0.544698 3_4:-73951613 Msa0521290:CDS
CATGTCGGCGCTGTCCAACC+TGG 0.547674 3_4:-73951642 Msa0521290:CDS
CAACTGCAATGCAATGGCAA+TGG 0.550519 3_4:+73953932 None:intergenic
CGCAAACCTCGCAAGCTACC+GGG 0.550896 3_4:-73953126 Msa0521290:intron
CATTAGAATGTAGCGTGTGG+TGG 0.552393 3_4:-73954022 Msa0521290:five_prime_UTR
GAATGTAGCGTGTGGTGGGG+TGG 0.556798 3_4:-73954017 Msa0521290:five_prime_UTR
GGCTCCACAAGCACATAAAG+TGG 0.560359 3_4:+73950635 None:intergenic
CTGAGCCATACCTTAACCTC+AGG 0.561630 3_4:+73951376 None:intergenic
ATAACTATAGCCCGTTCACC+AGG 0.563626 3_4:+73951624 None:intergenic
ACGTGCTAAGGCTGAAGTAG+TGG 0.569286 3_4:-73951422 Msa0521290:CDS
ATTAGAATGTAGCGTGTGGT+GGG 0.569665 3_4:-73954021 Msa0521290:five_prime_UTR
AAAGCCACTTTATGTGCTTG+TGG 0.574929 3_4:-73950639 Msa0521290:CDS
GTTGTACCCGGTAGCTTGCG+AGG 0.575231 3_4:+73953120 None:intergenic
TCGGCAAACATTCTGTGTGG+TGG 0.577777 3_4:+73953802 None:intergenic
GACGACTTGGTTGCAACAGG+TGG 0.588976 3_4:-73951600 Msa0521290:CDS
CAATTATGTAGAACGTGCTA+AGG 0.591327 3_4:-73951434 Msa0521290:intron
GAAGTGAGGGACGACTCTGA+TGG 0.595744 3_4:+73953732 None:intergenic
TATTTATTCTGTGAAGTGTG+AGG 0.604185 3_4:+73953870 None:intergenic
CTATAGCCCGTTCACCAGGT+TGG 0.604880 3_4:+73951628 None:intergenic
TTGTGTGATTGGTGTGCCTG+AGG 0.609251 3_4:-73951392 Msa0521290:CDS
ATGCAGGAATTGAAGCAAGA+GGG 0.621946 3_4:-73953203 Msa0521290:intron
GTGTGCCTGAGGTTAAGGTA+TGG 0.624449 3_4:-73951381 Msa0521290:CDS
GACATTGTTGTTAGATCACA+AGG 0.630489 3_4:-73953445 Msa0521290:CDS
TTATTCTGTGAAGTGTGAGG+AGG 0.635065 3_4:+73953873 None:intergenic
TATGCAGGAATTGAAGCAAG+AGG 0.643982 3_4:-73953204 Msa0521290:intron
AGGGACGACTCTGATGGACT+GGG 0.649098 3_4:+73953738 None:intergenic
ATGCTGCAACTGCAATGCAA+TGG 0.650406 3_4:+73953926 None:intergenic
GATTGTTTAGAAATGCATGT+CGG 0.652967 3_4:-73951657 Msa0521290:CDS
TCTTCGGCAAACATTCTGTG+TGG 0.661008 3_4:+73953799 None:intergenic
TTAGAATGTAGCGTGTGGTG+GGG 0.677097 3_4:-73954020 Msa0521290:five_prime_UTR
AAGCATTCATCTACTTGACG+TGG 0.677392 3_4:+73950614 None:intergenic
GAGCATTAGAATGTAGCGTG+TGG 0.693426 3_4:-73954025 Msa0521290:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAATAAATAAATAAATAAA+TGG + chr3_4:73951986-73952005 None:intergenic 0.0%
!! AAAAAACTAAGTAATAAAAT+GGG - chr3_4:73951082-73951101 Msa0521290:intron 10.0%
!!! AAAAGAGAAATTTTTTATTT+TGG - chr3_4:73951358-73951377 Msa0521290:intron 10.0%
!!! AAAGAGAAATTTTTTATTTT+GGG - chr3_4:73951359-73951378 Msa0521290:intron 10.0%
!! TTTATTTATATTTATTTAGG+AGG - chr3_4:73951785-73951804 Msa0521290:intron 10.0%
!! TTATTTATATTTATTTAGGA+GGG - chr3_4:73951786-73951805 Msa0521290:intron 10.0%
!!! TATTTGTATTTATTCATTTT+TGG + chr3_4:73953380-73953399 None:intergenic 10.0%
!!! ATTTGTATTTATTCATTTTT+TGG + chr3_4:73953379-73953398 None:intergenic 10.0%
!!! AGAATAAATATAATCAGTTT+TGG - chr3_4:73950781-73950800 Msa0521290:intron 15.0%
!!! GAATAAATATAATCAGTTTT+GGG - chr3_4:73950782-73950801 Msa0521290:intron 15.0%
!! ATTAAATAAGAAAAAAAGGA+AGG + chr3_4:73950963-73950982 None:intergenic 15.0%
!! CAAAAAACTAAGTAATAAAA+TGG - chr3_4:73951081-73951100 Msa0521290:intron 15.0%
!! ACAGAAATTAAATAAAAAAG+GGG + chr3_4:73951388-73951407 None:intergenic 15.0%
!! CACAGAAATTAAATAAAAAA+GGG + chr3_4:73951389-73951408 None:intergenic 15.0%
!! TCACAGAAATTAAATAAAAA+AGG + chr3_4:73951390-73951409 None:intergenic 15.0%
!!! ACTTTTTCTTATATTTAGTA+CGG + chr3_4:73951692-73951711 None:intergenic 15.0%
!! TACTAAATATAAGAAAAAGT+TGG - chr3_4:73951692-73951711 Msa0521290:CDS 15.0%
!! ACTAAATATAAGAAAAAGTT+GGG - chr3_4:73951693-73951712 Msa0521290:CDS 15.0%
!! AATAAAAATGTTGATGTATT+TGG + chr3_4:73951757-73951776 None:intergenic 15.0%
!! TATTTATATTTATTTAGGAG+GGG - chr3_4:73951787-73951806 Msa0521290:intron 15.0%
!!! AATAAACTCAAACAAAATTT+TGG + chr3_4:73951848-73951867 None:intergenic 15.0%
!!! TTAAATTTCTATCTTGTTAT+AGG - chr3_4:73953516-73953535 Msa0521290:intron 15.0%
!! TTCAAATAAGATTAATAACA+AGG + chr3_4:73953917-73953936 None:intergenic 15.0%
!! AGTAATAAATATTTGCTCAA+AGG - chr3_4:73950671-73950690 Msa0521290:CDS 20.0%
!!! AGAAAAGAAAACCATTTTTA+GGG + chr3_4:73950931-73950950 None:intergenic 20.0%
!!! AAGAAAAGAAAACCATTTTT+AGG + chr3_4:73950932-73950951 None:intergenic 20.0%
!! TTCTGTGATTTAATGTAATT+AGG - chr3_4:73951402-73951421 Msa0521290:CDS 20.0%
!! TGATTTAATGTAATTAGGTT+TGG - chr3_4:73951407-73951426 Msa0521290:CDS 20.0%
!!! CTTTTTCTTATATTTAGTAC+GGG + chr3_4:73951691-73951710 None:intergenic 20.0%
!! GAGTTTATTCAAAGAATATT+AGG - chr3_4:73951859-73951878 Msa0521290:intron 20.0%
!! AATAAACACTTTCGATATAA+AGG - chr3_4:73952008-73952027 Msa0521290:intron 20.0%
!! TTGCCAATATATATACTATT+CGG - chr3_4:73952364-73952383 Msa0521290:intron 20.0%
!! AATATATATACTATTCGGTA+CGG - chr3_4:73952369-73952388 Msa0521290:intron 20.0%
!!! CAATATTTTCAAATTGATCA+TGG - chr3_4:73952392-73952411 Msa0521290:intron 20.0%
!! TAAGTTGTATGTTATATGAT+AGG - chr3_4:73952618-73952637 Msa0521290:intron 20.0%
!! AAGTTGTATGTTATATGATA+GGG - chr3_4:73952619-73952638 Msa0521290:intron 20.0%
!! ACATATACTATTTAACTCAA+AGG + chr3_4:73952732-73952751 None:intergenic 20.0%
!! TGAGTTAAATAGTATATGTT+TGG - chr3_4:73952733-73952752 Msa0521290:intron 20.0%
!! TAAATAGTATATGTTTGGTT+TGG - chr3_4:73952738-73952757 Msa0521290:intron 20.0%
!! AATGAAACATATCAAAGTTT+AGG + chr3_4:73952915-73952934 None:intergenic 20.0%
!!! GAAAAATATTCTCTAGAATA+CGG - chr3_4:73952954-73952973 Msa0521290:intron 20.0%
!! TTATAATTGTTCATTGAATC+TGG - chr3_4:73953145-73953164 Msa0521290:CDS 20.0%
!!! AAGAAAGCATAAAGTATATT+GGG + chr3_4:73953179-73953198 None:intergenic 20.0%
!!! AAAGAAAGCATAAAGTATAT+TGG + chr3_4:73953180-73953199 None:intergenic 20.0%
!!! TGAAATTTCTATCTTGTTAT+AGG - chr3_4:73953328-73953347 Msa0521290:intron 20.0%
!!! AATCTTATTTGAAATCATGA+TGG - chr3_4:73953924-73953943 Msa0521290:five_prime_UTR 20.0%
! TAAATATTTGCTCAAAGGAA+AGG - chr3_4:73950676-73950695 Msa0521290:CDS 25.0%
!!! TAAATATAATCAGTTTTGGG+AGG - chr3_4:73950785-73950804 Msa0521290:intron 25.0%
!!! AAATATAATCAGTTTTGGGA+GGG - chr3_4:73950786-73950805 Msa0521290:intron 25.0%
!! TTAATGTAATTAGGTTTGGT+TGG - chr3_4:73951411-73951430 Msa0521290:CDS 25.0%
!! AGTAGTACTAAACTTTTATG+TGG - chr3_4:73951619-73951638 Msa0521290:CDS 25.0%
!! TACTAAACTTTTATGTGGAA+TGG - chr3_4:73951624-73951643 Msa0521290:CDS 25.0%
!! ACTAAACTTTTATGTGGAAT+GGG - chr3_4:73951625-73951644 Msa0521290:CDS 25.0%
! TGATGTATGAATATTCAATG+TGG - chr3_4:73952221-73952240 Msa0521290:intron 25.0%
! GATGTATGAATATTCAATGT+GGG - chr3_4:73952222-73952241 Msa0521290:intron 25.0%
! GTACCGAATAGTATATATAT+TGG + chr3_4:73952370-73952389 None:intergenic 25.0%
! TGATTCATACAATTTCAATC+AGG + chr3_4:73952523-73952542 None:intergenic 25.0%
! TTCTGTTTAACCAAACTAAT+TGG - chr3_4:73952582-73952601 Msa0521290:intron 25.0%
! TCTGTTTAACCAAACTAATT+GGG - chr3_4:73952583-73952602 Msa0521290:intron 25.0%
!! ATGTTATATGATAGGGATTT+TGG - chr3_4:73952626-73952645 Msa0521290:intron 25.0%
! AAATCATCGTCAATAATCAT+TGG + chr3_4:73952788-73952807 None:intergenic 25.0%
!! CTTTGATATGTTTCATTTTC+AGG - chr3_4:73952918-73952937 Msa0521290:intron 25.0%
!! AGAAAGCATAAAGTATATTG+GGG + chr3_4:73953178-73953197 None:intergenic 25.0%
! TAACAAGATAGAAATTTCAG+AGG + chr3_4:73953327-73953346 None:intergenic 25.0%
!! AAACAAATTTGAAGTCCAAT+AGG + chr3_4:73953450-73953469 None:intergenic 25.0%
! TATGTACAACAAATTTGAAG+TGG + chr3_4:73953640-73953659 None:intergenic 25.0%
! TTAAAAATGTTAAGGAGAGT+TGG + chr3_4:73953849-73953868 None:intergenic 25.0%
TATTTATTCTGTGAAGTGTG+AGG + chr3_4:73950771-73950790 None:intergenic 30.0%
AGAAAAAAAGGAAGGAAAGA+AGG + chr3_4:73950955-73950974 None:intergenic 30.0%
ACTAAGTAATAAAATGGGTC+TGG - chr3_4:73951087-73951106 Msa0521290:intron 30.0%
CTAAGTAATAAAATGGGTCT+GGG - chr3_4:73951088-73951107 Msa0521290:intron 30.0%
! CACAAAAATGTGTAATTTGC+AGG - chr3_4:73951149-73951168 Msa0521290:intron 30.0%
ACAAAAAAAGTAGTGCATGA+GGG + chr3_4:73951305-73951324 None:intergenic 30.0%
AACAAAAAAAGTAGTGCATG+AGG + chr3_4:73951306-73951325 None:intergenic 30.0%
TTTCTTATATTTAGTACGGG+AGG + chr3_4:73951688-73951707 None:intergenic 30.0%
TATATTTATTTAGGAGGGGA+TGG - chr3_4:73951791-73951810 Msa0521290:intron 30.0%
TTCCATCACATAAAGTCAAT+TGG - chr3_4:73952085-73952104 Msa0521290:intron 30.0%
ACTTTCCTCTTAGATATTGT+GGG + chr3_4:73952141-73952160 None:intergenic 30.0%
! CATCAAATTGATGATCAGAT+TGG - chr3_4:73952418-73952437 Msa0521290:intron 30.0%
TTCATACAATTTCAATCAGG+AGG + chr3_4:73952520-73952539 None:intergenic 30.0%
TGAAATTGTATGAATCAACC+AGG - chr3_4:73952526-73952545 Msa0521290:intron 30.0%
CTGTTTAACCAAACTAATTG+GGG - chr3_4:73952584-73952603 Msa0521290:intron 30.0%
AAATTAAGCCCCAATTAGTT+TGG + chr3_4:73952595-73952614 None:intergenic 30.0%
AAACTAATTGGGGCTTAATT+TGG - chr3_4:73952594-73952613 Msa0521290:intron 30.0%
TAGATACGTTCTACAATTCA+GGG + chr3_4:73952819-73952838 None:intergenic 30.0%
ATAGATACGTTCTACAATTC+AGG + chr3_4:73952820-73952839 None:intergenic 30.0%
GATTGTTTAGAAATGCATGT+CGG - chr3_4:73952981-73953000 Msa0521290:intron 30.0%
!! AGGAATAAAACTTTTAGGTG+TGG - chr3_4:73953073-73953092 Msa0521290:intron 30.0%
ATAAGTCAAAAAATGACGCA+GGG + chr3_4:73953129-73953148 None:intergenic 30.0%
TATAAGTCAAAAAATGACGC+AGG + chr3_4:73953130-73953149 None:intergenic 30.0%
AGGTACTCTTAAAAGCTTAA+AGG - chr3_4:73953348-73953367 Msa0521290:intron 30.0%
! CTGAATTATTGATAGCCTAT+TGG - chr3_4:73953432-73953451 Msa0521290:CDS 30.0%
! GTTAAGACCTTTAAGCTTTT+AGG + chr3_4:73953546-73953565 None:intergenic 30.0%
! CAACAAATTTGAAGTGGAAT+AGG + chr3_4:73953634-73953653 None:intergenic 30.0%
! ATATCCTTATAGACTTGCTT+AGG - chr3_4:73953696-73953715 Msa0521290:intron 30.0%
! TATCCTTATAGACTTGCTTA+GGG - chr3_4:73953697-73953716 Msa0521290:intron 30.0%
!!! TAATGAAGCCTTCTTTTTTC+AGG - chr3_4:73953957-73953976 Msa0521290:five_prime_UTR 30.0%
!!! AATGAAGCCTTCTTTTTTCA+GGG - chr3_4:73953958-73953977 Msa0521290:five_prime_UTR 30.0%
AGAATGTTTGCCGAAGAAAA+TGG - chr3_4:73950845-73950864 Msa0521290:intron 35.0%
! ACCCTTAAGACCATTTTCTT+CGG + chr3_4:73950858-73950877 None:intergenic 35.0%
!! AACCATTTTTAGGGAAGTGA+GGG + chr3_4:73950922-73950941 None:intergenic 35.0%
!! AAACCATTTTTAGGGAAGTG+AGG + chr3_4:73950923-73950942 None:intergenic 35.0%
TCATGCAGTTTCTATCAGAA+TGG - chr3_4:73951013-73951032 Msa0521290:intron 35.0%
ATAAAGAGTTGCAGATCTGT+TGG + chr3_4:73951047-73951066 None:intergenic 35.0%
! GACATTGTTGTTAGATCACA+AGG - chr3_4:73951193-73951212 Msa0521290:intron 35.0%
ATGAACAGAAATGTTGTACC+CGG + chr3_4:73951533-73951552 None:intergenic 35.0%
! AACTTTTATGTGGAATGGGA+TGG - chr3_4:73951629-73951648 Msa0521290:CDS 35.0%
TTATATTTAGTACGGGAGGA+GGG + chr3_4:73951684-73951703 None:intergenic 35.0%
ATGTGATGTTCATTACTGTG+TGG - chr3_4:73951897-73951916 Msa0521290:intron 35.0%
TTTCGATATAAAGGCTGTCA+TGG - chr3_4:73952017-73952036 Msa0521290:intron 35.0%
! AGCCAATTGACTTTATGTGA+TGG + chr3_4:73952090-73952109 None:intergenic 35.0%
!! ATATTGTGGGCTAGTTAACT+AGG + chr3_4:73952128-73952147 None:intergenic 35.0%
CACTTTCCTCTTAGATATTG+TGG + chr3_4:73952142-73952161 None:intergenic 35.0%
AGTGAAACAAATGTATGTGC+TGG - chr3_4:73952286-73952305 Msa0521290:intron 35.0%
! TTTTTCCTCTTGATCTGCAT+TGG - chr3_4:73952335-73952354 Msa0521290:intron 35.0%
! TTTTCCTCTTGATCTGCATT+GGG - chr3_4:73952336-73952355 Msa0521290:intron 35.0%
AATTGTATGAATCAACCAGG+TGG - chr3_4:73952529-73952548 Msa0521290:intron 35.0%
TGGAGGTAAACGTATCTAAT+TGG - chr3_4:73952549-73952568 Msa0521290:intron 35.0%
TTGATTGAACTTAAGCACAC+TGG + chr3_4:73952666-73952685 None:intergenic 35.0%
!! TATATGTTTGGTTTGGTAGC+TGG - chr3_4:73952745-73952764 Msa0521290:intron 35.0%
! TCGGCAGGAATAAAACTTTT+AGG - chr3_4:73953068-73953087 Msa0521290:intron 35.0%
TAAGTCAAAAAATGACGCAG+GGG + chr3_4:73953128-73953147 None:intergenic 35.0%
! TTGTTCATTGAATCTGGTTC+TGG - chr3_4:73953151-73953170 Msa0521290:CDS 35.0%
CTTAGCACGTTCTACATAAT+TGG + chr3_4:73953206-73953225 None:intergenic 35.0%
CAATTATGTAGAACGTGCTA+AGG - chr3_4:73953204-73953223 Msa0521290:intron 35.0%
AGGTACTCCTAAAAGCTTAA+AGG - chr3_4:73953536-73953555 Msa0521290:intron 35.0%
ATTACTTGTTCACTTGTGCT+CGG + chr3_4:73953678-73953697 None:intergenic 35.0%
TAACCCTAAGCAAGTCTATA+AGG + chr3_4:73953703-73953722 None:intergenic 35.0%
ATTAGAATGTAGCGTGTGGT+GGG - chr3_4:73950617-73950636 Msa0521290:CDS 40.0%
AACTGCAATGCAATGGCAAT+GGG + chr3_4:73950708-73950727 None:intergenic 40.0%
TTATTCTGTGAAGTGTGAGG+AGG + chr3_4:73950768-73950787 None:intergenic 40.0%
! TGCCGAAGAAAATGGTCTTA+AGG - chr3_4:73950853-73950872 Msa0521290:intron 40.0%
! GCCGAAGAAAATGGTCTTAA+GGG - chr3_4:73950854-73950873 Msa0521290:intron 40.0%
ATGCACATTTCAGTTGTTGC+TGG - chr3_4:73951260-73951279 Msa0521290:intron 40.0%
CATTTCAGTTGTTGCTGGTA+TGG - chr3_4:73951265-73951284 Msa0521290:intron 40.0%
AAAAAGTAGTGCATGAGGGA+GGG + chr3_4:73951301-73951320 None:intergenic 40.0%
AAAAAAGTAGTGCATGAGGG+AGG + chr3_4:73951302-73951321 None:intergenic 40.0%
! ATTAGGTTTGGTTGGTATGC+AGG - chr3_4:73951419-73951438 Msa0521290:CDS 40.0%
TATGCAGGAATTGAAGCAAG+AGG - chr3_4:73951434-73951453 Msa0521290:intron 40.0%
ATGCAGGAATTGAAGCAAGA+GGG - chr3_4:73951435-73951454 Msa0521290:intron 40.0%
CAAGTTTCAGCAGCTAAAAG+TGG + chr3_4:73951597-73951616 None:intergenic 40.0%
CTTATATTTAGTACGGGAGG+AGG + chr3_4:73951685-73951704 None:intergenic 40.0%
! AGGGGATGGAGTATTATCTT+TGG - chr3_4:73951805-73951824 Msa0521290:intron 40.0%
TGATGTTCATTACTGTGTGG+AGG - chr3_4:73951900-73951919 Msa0521290:intron 40.0%
! TGTGATGGAACAACCAAAGT+AGG + chr3_4:73952075-73952094 None:intergenic 40.0%
ACTAGCCCACAATATCTAAG+AGG - chr3_4:73952133-73952152 Msa0521290:intron 40.0%
! GCTGGTATTGTTGCTTAGTT+TGG - chr3_4:73952304-73952323 Msa0521290:intron 40.0%
AGGAGTGATCAAGTTACTTC+AGG + chr3_4:73952500-73952519 None:intergenic 40.0%
! GTCTTTGTTTGCATTCACAG+TGG + chr3_4:73952872-73952891 None:intergenic 40.0%
TTACTTGTTCACTTGTGCTC+GGG + chr3_4:73953677-73953696 None:intergenic 40.0%
TTCTCCTGTTGTCGATATGA+GGG - chr3_4:73953739-73953758 Msa0521290:CDS 40.0%
ATCAATGATGTGCGGTGTAA+AGG + chr3_4:73953791-73953810 None:intergenic 40.0%
GGAAAAGGATCAATGATGTG+CGG + chr3_4:73953799-73953818 None:intergenic 40.0%
!!! AAGCCTTCTTTTTTCAGGGA+CGG - chr3_4:73953962-73953981 Msa0521290:five_prime_UTR 40.0%
! AAAGCCACTTTATGTGCTTG+TGG - chr3_4:73953999-73954018 Msa0521290:five_prime_UTR 40.0%
AAGCATTCATCTACTTGACG+TGG + chr3_4:73954027-73954046 None:intergenic 40.0%
GAGCATTAGAATGTAGCGTG+TGG - chr3_4:73950613-73950632 Msa0521290:CDS 45.0%
CATTAGAATGTAGCGTGTGG+TGG - chr3_4:73950616-73950635 Msa0521290:CDS 45.0%
TTAGAATGTAGCGTGTGGTG+GGG - chr3_4:73950618-73950637 Msa0521290:CDS 45.0%
CAACTGCAATGCAATGGCAA+TGG + chr3_4:73950709-73950728 None:intergenic 45.0%
ATGCTGCAACTGCAATGCAA+TGG + chr3_4:73950715-73950734 None:intergenic 45.0%
TCTTCGGCAAACATTCTGTG+TGG + chr3_4:73950842-73950861 None:intergenic 45.0%
GGGAGATGTGTTGCAATCTA+GGG + chr3_4:73950883-73950902 None:intergenic 45.0%
TGGGAGATGTGTTGCAATCT+AGG + chr3_4:73950884-73950903 None:intergenic 45.0%
GTCCCTCACTTCCCTAAAAA+TGG - chr3_4:73950917-73950936 Msa0521290:intron 45.0%
!! CTGGGTGTTTTTGTCTGTGT+TGG - chr3_4:73951106-73951125 Msa0521290:intron 45.0%
GAAGCAAGAGGGTTTGTGTT+TGG - chr3_4:73951446-73951465 Msa0521290:intron 45.0%
!! TTTGGTTCTGCAGTTGCGTT+GGG - chr3_4:73951464-73951483 Msa0521290:intron 45.0%
GGAACAACCAAAGTAGGACA+AGG + chr3_4:73952069-73952088 None:intergenic 45.0%
TTGACCCAATGCAGATCAAG+AGG + chr3_4:73952343-73952362 None:intergenic 45.0%
TGTATGAATCAACCAGGTGG+AGG - chr3_4:73952532-73952551 Msa0521290:intron 45.0%
TAGATACGTTTACCTCCACC+TGG + chr3_4:73952547-73952566 None:intergenic 45.0%
TGAGTTATTCCACTGTGCTG+CGG - chr3_4:73952842-73952861 Msa0521290:intron 45.0%
ATAACTATAGCCCGTTCACC+AGG + chr3_4:73953017-73953036 None:intergenic 45.0%
GGCTATAGTTATCGACGACT+TGG - chr3_4:73953025-73953044 Msa0521290:intron 45.0%
TGCAACAGGTGGAACTTTGT+CGG - chr3_4:73953049-73953068 Msa0521290:intron 45.0%
GTGGAATGTGCTTGTGTGAT+TGG - chr3_4:73953235-73953254 Msa0521290:intron 45.0%
CTTCTCCTGTTGTCGATATG+AGG - chr3_4:73953738-73953757 Msa0521290:CDS 45.0%
TTAAGGAGAGTTGGATCTCC+AGG + chr3_4:73953840-73953859 None:intergenic 45.0%
ACACCGTCCCTGAAAAAAGA+AGG + chr3_4:73953968-73953987 None:intergenic 45.0%
!! TAAAATTAAATAAGAAAAAA+AGG + chr3_4:73950967-73950986 None:intergenic 5.0%
!! AAATAAATATAAATAAAGTT+AGG + chr3_4:73951782-73951801 None:intergenic 5.0%
!!! AACTTTATTTATATTTATTT+AGG - chr3_4:73951782-73951801 Msa0521290:intron 5.0%
!!! ATTTTTTATTAAAAATGTTA+AGG + chr3_4:73953857-73953876 None:intergenic 5.0%
!!! ATCAGTTTTGGGAGGGAGTG+AGG - chr3_4:73950793-73950812 Msa0521290:intron 50.0%
!!! TCAGTTTTGGGAGGGAGTGA+GGG - chr3_4:73950794-73950813 Msa0521290:intron 50.0%
TCGGCAAACATTCTGTGTGG+TGG + chr3_4:73950839-73950858 None:intergenic 50.0%
!! GTTTGGTTCTGCAGTTGCGT+TGG - chr3_4:73951463-73951482 Msa0521290:intron 50.0%
TCTGCAGTTGCGTTGGGAAT+TGG - chr3_4:73951470-73951489 Msa0521290:intron 50.0%
AGCTTGCGAGGTTTGCGTAA+AGG + chr3_4:73951509-73951528 None:intergenic 50.0%
TGGGATGGCCCATTTGACAA+CGG - chr3_4:73951644-73951663 Msa0521290:CDS 50.0%
CACCAACCCCGTTGTCAAAT+GGG + chr3_4:73951655-73951674 None:intergenic 50.0%
ACACCAACCCCGTTGTCAAA+TGG + chr3_4:73951656-73951675 None:intergenic 50.0%
! AAAGGCTGTCATGGTCTTGC+TGG - chr3_4:73952026-73952045 Msa0521290:intron 50.0%
! AAGGCTGTCATGGTCTTGCT+GGG - chr3_4:73952027-73952046 Msa0521290:intron 50.0%
! GGAAAGGCCTTGTCCTACTT+TGG - chr3_4:73952059-73952078 Msa0521290:intron 50.0%
!! ATCGACGACTTGGTTGCAAC+AGG - chr3_4:73953035-73953054 Msa0521290:intron 50.0%
ACGTGCTAAGGCTGAAGTAG+TGG - chr3_4:73953216-73953235 Msa0521290:intron 50.0%
TTGTGTGATTGGTGTGCCTG+AGG - chr3_4:73953246-73953265 Msa0521290:intron 50.0%
GATTGGTGTGCCTGAGGTTA+AGG - chr3_4:73953252-73953271 Msa0521290:intron 50.0%
GTGTGCCTGAGGTTAAGGTA+TGG - chr3_4:73953257-73953276 Msa0521290:intron 50.0%
CTGAGCCATACCTTAACCTC+AGG + chr3_4:73953265-73953284 None:intergenic 50.0%
GTAGCCCTCATATCGACAAC+AGG + chr3_4:73953746-73953765 None:intergenic 50.0%
TGTCGATATGAGGGCTACGT+TGG - chr3_4:73953748-73953767 Msa0521290:CDS 50.0%
CAGGGACGGTGTAAACTTCT+TGG - chr3_4:73953976-73953995 Msa0521290:five_prime_UTR 50.0%
GGCTCCACAAGCACATAAAG+TGG + chr3_4:73954006-73954025 None:intergenic 50.0%
! GAGTGACGCTTGCTTGCTGA+TGG - chr3_4:73950643-73950662 Msa0521290:CDS 55.0%
!! TTTTGGGAGGGAGTGAGGGA+GGG - chr3_4:73950798-73950817 Msa0521290:intron 55.0%
!! AGGGACGACTCTGATGGACT+GGG + chr3_4:73950903-73950922 None:intergenic 55.0%
GAAGTGAGGGACGACTCTGA+TGG + chr3_4:73950909-73950928 None:intergenic 55.0%
ACGCAAACCTCGCAAGCTAC+CGG - chr3_4:73951511-73951530 Msa0521290:intron 55.0%
GGGATGGCCCATTTGACAAC+GGG - chr3_4:73951645-73951664 Msa0521290:CDS 55.0%
GGATGGCCCATTTGACAACG+GGG - chr3_4:73951646-73951665 Msa0521290:CDS 55.0%
TGCTGGGACTGTGTGTGGAA+AGG - chr3_4:73952043-73952062 Msa0521290:intron 55.0%
CTATAGCCCGTTCACCAGGT+TGG + chr3_4:73953013-73953032 None:intergenic 55.0%
!! GACGACTTGGTTGCAACAGG+TGG - chr3_4:73953038-73953057 Msa0521290:intron 55.0%
ACAGGTGGAACTTTGTCGGC+AGG - chr3_4:73953053-73953072 Msa0521290:intron 55.0%
! TCCTTTTCCTGACCCTGCCT+TGG - chr3_4:73953810-73953829 Msa0521290:exon 55.0%
ACCAAGGCAGGGTCAGGAAA+AGG + chr3_4:73953814-73953833 None:intergenic 55.0%
TTGGATCTCCAGGCACACCA+AGG + chr3_4:73953830-73953849 None:intergenic 55.0%
! GAATGTAGCGTGTGGTGGGG+TGG - chr3_4:73950621-73950640 Msa0521290:CDS 60.0%
!!! GTTTTGGGAGGGAGTGAGGG+AGG - chr3_4:73950797-73950816 Msa0521290:intron 60.0%
! GAGGGACGACTCTGATGGAC+TGG + chr3_4:73950904-73950923 None:intergenic 60.0%
CGCAAACCTCGCAAGCTACC+GGG - chr3_4:73951512-73951531 Msa0521290:intron 60.0%
! GTTGTACCCGGTAGCTTGCG+AGG + chr3_4:73951521-73951540 None:intergenic 60.0%
GGCCCATTTGACAACGGGGT+TGG - chr3_4:73951650-73951669 Msa0521290:CDS 60.0%
GGTCTTGCTGGGACTGTGTG+TGG - chr3_4:73952038-73952057 Msa0521290:intron 60.0%
AGTGGAATGCCGCAGCACAG+TGG + chr3_4:73952854-73952873 None:intergenic 60.0%
GCGCTGTCCAACCTGGTGAA+CGG - chr3_4:73953003-73953022 Msa0521290:intron 60.0%
CGCTGTCCAACCTGGTGAAC+GGG - chr3_4:73953004-73953023 Msa0521290:intron 60.0%
TCTCCAGGCACACCAAGGCA+GGG + chr3_4:73953825-73953844 None:intergenic 60.0%
ATCTCCAGGCACACCAAGGC+AGG + chr3_4:73953826-73953845 None:intergenic 60.0%
CATGTCGGCGCTGTCCAACC+TGG - chr3_4:73952996-73953015 Msa0521290:intron 65.0%
AGGCACACCAAGGCAGGGTC+AGG + chr3_4:73953820-73953839 None:intergenic 65.0%
! TGACCCTGCCTTGGTGTGCC+TGG - chr3_4:73953819-73953838 Msa0521290:five_prime_UTR 65.0%
TGGGAGGGAGTGAGGGAGGG+AGG - chr3_4:73950801-73950820 Msa0521290:intron 70.0%
GGGAGGGAGTGAGGGAGGGA+GGG - chr3_4:73950802-73950821 Msa0521290:intron 70.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 73950610 73954050 73950610 ID=Msa0521290;Name=Msa0521290
chr3_4 mRNA 73950610 73954050 73950610 ID=Msa0521290-mRNA-1;Parent=Msa0521290;Name=Msa0521290-mRNA-1;_AED=0.32;_eAED=0.32;_QI=238|0.8|0.66|1|0.8|0.83|6|0|201
chr3_4 exon 73950610 73950695 73950610 ID=Msa0521290-mRNA-1:exon:20909;Parent=Msa0521290-mRNA-1
chr3_4 exon 73951371 73951445 73951371 ID=Msa0521290-mRNA-1:exon:20908;Parent=Msa0521290-mRNA-1
chr3_4 exon 73951571 73951720 73951571 ID=Msa0521290-mRNA-1:exon:20907;Parent=Msa0521290-mRNA-1
chr3_4 exon 73953127 73953219 73953127 ID=Msa0521290-mRNA-1:exon:20906;Parent=Msa0521290-mRNA-1
chr3_4 exon 73953379 73953489 73953379 ID=Msa0521290-mRNA-1:exon:20905;Parent=Msa0521290-mRNA-1
chr3_4 exon 73953722 73954050 73953722 ID=Msa0521290-mRNA-1:exon:20904;Parent=Msa0521290-mRNA-1
chr3_4 five_prime_UTR 73953813 73954050 73953813 ID=Msa0521290-mRNA-1:five_prime_utr;Parent=Msa0521290-mRNA-1
chr3_4 CDS 73953722 73953812 73953722 ID=Msa0521290-mRNA-1:cds;Parent=Msa0521290-mRNA-1
chr3_4 CDS 73953379 73953489 73953379 ID=Msa0521290-mRNA-1:cds;Parent=Msa0521290-mRNA-1
chr3_4 CDS 73953127 73953219 73953127 ID=Msa0521290-mRNA-1:cds;Parent=Msa0521290-mRNA-1
chr3_4 CDS 73951571 73951720 73951571 ID=Msa0521290-mRNA-1:cds;Parent=Msa0521290-mRNA-1
chr3_4 CDS 73951371 73951445 73951371 ID=Msa0521290-mRNA-1:cds;Parent=Msa0521290-mRNA-1
chr3_4 CDS 73950610 73950695 73950610 ID=Msa0521290-mRNA-1:cds;Parent=Msa0521290-mRNA-1
Gene Sequence

>Msa0521290

ATGTTTGCCGAAGAAAATGGTCTTAAGGGTGACCCTAGATTGCAACACATCTCCCAGTCCATCAGAGTCGTCCCTCACTTCCCTAAAAATGGAATAATGTTTCAAGACATAACGACATTGTTGTTAGATCACAAGGCGTTTAAAGATACTGTCGATATCTTTGTCGATCGTTACAGAGACATGCACATTTCAGTTGTTGCTGGAATTGAAGCAAGAGGGTTTGTGTTTGGTTCTGCAGTTGCGTTGGGAATTGGTGCAAAGTTTGTTCCTTTACGCAAACCTCGCAAGCTACCGGGTGAAGTATTTTTCGAAAAATATTCTCTAGAATACGGAACTGATTGTTTAGAAATGCATGTCGGCGCTGTCCAACCTGGTGAACGGGCTATAGTTATCGACGACTTGGTTGCAACAGGTGGAACTTTGTCGGCAGGAATAAAACTTTTAGAACGTGCTAAGGCTGAAGTAGTGGAATGTGCTTGTGTGATTGGTGTGCCTGAGGTTAAGGTATGGCTCAGCTTTTCCTTCTTTTTTCAGGGACGGTGTAAACTTCTTGGAAAGCCACTTTATGTGCTTGTGGAGCCACGTCAAGTAGATGAATGCTTTTGA

Protein sequence

>Msa0521290

MFAEENGLKGDPRLQHISQSIRVVPHFPKNGIMFQDITTLLLDHKAFKDTVDIFVDRYRDMHISVVAGIEARGFVFGSAVALGIGAKFVPLRKPRKLPGEVFFEKYSLEYGTDCLEMHVGAVQPGERAIVIDDLVATGGTLSAGIKLLERAKAEVVECACVIGVPEVKVWLSFSFFFQGRCKLLGKPLYVLVEPRQVDECF*