Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0521290 | XP_003603366.2 | 94.527 | 201 | 1 | 1 | 1 | 201 | 1 | 191 | 3.55e-132 | 379 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0521290 | sp|Q9LFP0|APT5_ARATH | 73.367 | 199 | 43 | 1 | 1 | 199 | 1 | 189 | 1.27e-99 | 289 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0521290 | G7JAH8 | 94.527 | 201 | 1 | 1 | 1 | 201 | 1 | 191 | 1.70e-132 | 379 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0093850 | Msa0521290 | 0.811172 | 7.995604e-51 | -8.615850e-47 |
Msa0138360 | Msa0521290 | 0.803585 | 3.249470e-49 | -8.615850e-47 |
Msa0476920 | Msa0521290 | 0.889325 | 2.679344e-73 | -8.615850e-47 |
Msa0341690 | Msa0521290 | 0.806671 | 7.345920e-50 | -8.615850e-47 |
Msa0518030 | Msa0521290 | 0.820585 | 6.345234e-53 | -8.615850e-47 |
Msa0521290 | Msa0713970 | 0.801819 | 7.519790e-49 | -8.615850e-47 |
Msa0521290 | Msa0829240 | 0.962515 | 5.720119e-121 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0521290 | MtrunA17_Chr3g0137551 | 94.527 | 201 | 1 | 1 | 1 | 201 | 1 | 191 | 3.27e-136 | 379 |
Msa0521290 | MtrunA17_Chr3g0134721 | 71.585 | 183 | 42 | 1 | 11 | 193 | 70 | 242 | 3.53e-91 | 267 |
Msa0521290 | MtrunA17_Chr5g0399031 | 70.492 | 183 | 44 | 1 | 11 | 193 | 10 | 182 | 4.27e-87 | 254 |
Msa0521290 | MtrunA17_Chr4g0056471 | 66.667 | 183 | 51 | 1 | 11 | 193 | 8 | 180 | 9.44e-82 | 241 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0521290 | AT5G11160.1 | 73.367 | 199 | 43 | 1 | 1 | 199 | 1 | 189 | 1.30e-100 | 289 |
Msa0521290 | AT1G80050.1 | 71.357 | 199 | 47 | 1 | 1 | 199 | 1 | 189 | 2.58e-98 | 283 |
Msa0521290 | AT4G12440.3 | 68.586 | 191 | 49 | 2 | 5 | 195 | 3 | 182 | 6.04e-89 | 259 |
Msa0521290 | AT4G12440.2 | 68.586 | 191 | 49 | 2 | 5 | 195 | 3 | 182 | 6.04e-89 | 259 |
Msa0521290 | AT4G22570.1 | 67.368 | 190 | 52 | 1 | 6 | 195 | 4 | 183 | 2.49e-86 | 253 |
Msa0521290 | AT1G27450.2 | 66.120 | 183 | 52 | 1 | 11 | 193 | 8 | 180 | 2.10e-84 | 248 |
Msa0521290 | AT1G27450.4 | 66.120 | 183 | 52 | 1 | 11 | 193 | 8 | 180 | 2.10e-84 | 248 |
Msa0521290 | AT1G27450.1 | 66.120 | 183 | 52 | 1 | 11 | 193 | 68 | 240 | 1.54e-83 | 248 |
Msa0521290 | AT5G11160.2 | 77.703 | 148 | 33 | 0 | 1 | 148 | 1 | 148 | 9.60e-81 | 238 |
Msa0521290 | AT1G80050.2 | 70.659 | 167 | 39 | 1 | 33 | 199 | 1 | 157 | 3.06e-78 | 231 |
Msa0521290 | AT1G27450.3 | 58.173 | 208 | 52 | 2 | 11 | 193 | 84 | 281 | 2.81e-77 | 233 |
Msa0521290 | AT4G12440.1 | 77.083 | 96 | 21 | 1 | 4 | 99 | 2 | 96 | 8.46e-48 | 152 |
Msa0521290 | AT4G12440.4 | 77.083 | 96 | 21 | 1 | 4 | 99 | 2 | 96 | 8.46e-48 | 152 |
Msa0521290 | AT4G22570.2 | 72.632 | 95 | 26 | 0 | 6 | 100 | 4 | 98 | 2.06e-44 | 144 |
Find 60 sgRNAs with CRISPR-Local
Find 237 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AGAATAAATATAATCAGTTT+TGG | 0.254134 | 3_4:-73953857 | Msa0521290:five_prime_UTR |
CAGGGACGGTGTAAACTTCT+TGG | 0.284373 | 3_4:-73950662 | Msa0521290:CDS |
TGGGAGGGAGTGAGGGAGGG+AGG | 0.301978 | 3_4:-73953837 | Msa0521290:five_prime_UTR |
TGGGAGATGTGTTGCAATCT+AGG | 0.320267 | 3_4:+73953757 | None:intergenic |
CGCTGTCCAACCTGGTGAAC+GGG | 0.371582 | 3_4:-73951634 | Msa0521290:CDS |
GCCGAAGAAAATGGTCTTAA+GGG | 0.373266 | 3_4:-73953784 | Msa0521290:CDS |
TGCCGAAGAAAATGGTCTTA+AGG | 0.403352 | 3_4:-73953785 | Msa0521290:CDS |
TCTGCAGTTGCGTTGGGAAT+TGG | 0.405636 | 3_4:-73953168 | Msa0521290:CDS |
GAAGCAAGAGGGTTTGTGTT+TGG | 0.411897 | 3_4:-73953192 | Msa0521290:CDS |
GATTGGTGTGCCTGAGGTTA+AGG | 0.414050 | 3_4:-73951386 | Msa0521290:CDS |
AGAATGTTTGCCGAAGAAAA+TGG | 0.424560 | 3_4:-73953793 | Msa0521290:CDS |
GTGGAATGTGCTTGTGTGAT+TGG | 0.438632 | 3_4:-73951403 | Msa0521290:CDS |
ATCGACGACTTGGTTGCAAC+AGG | 0.448378 | 3_4:-73951603 | Msa0521290:CDS |
GGGAGGGAGTGAGGGAGGGA+GGG | 0.458138 | 3_4:-73953836 | Msa0521290:five_prime_UTR |
TTTGGTTCTGCAGTTGCGTT+GGG | 0.461360 | 3_4:-73953174 | Msa0521290:CDS |
AGCTTGCGAGGTTTGCGTAA+AGG | 0.464262 | 3_4:+73953132 | None:intergenic |
GAGGGACGACTCTGATGGAC+TGG | 0.472031 | 3_4:+73953737 | None:intergenic |
GCGCTGTCCAACCTGGTGAA+CGG | 0.478342 | 3_4:-73951635 | Msa0521290:CDS |
ACGCAAACCTCGCAAGCTAC+CGG | 0.479212 | 3_4:-73953127 | Msa0521290:CDS |
GTTTGGTTCTGCAGTTGCGT+TGG | 0.491474 | 3_4:-73953175 | Msa0521290:CDS |
TGCAACAGGTGGAACTTTGT+CGG | 0.495035 | 3_4:-73951589 | Msa0521290:CDS |
ATGCACATTTCAGTTGTTGC+TGG | 0.495656 | 3_4:-73953378 | Msa0521290:intron |
GAGTGACGCTTGCTTGCTGA+TGG | 0.500328 | 3_4:-73953995 | Msa0521290:five_prime_UTR |
AACTGCAATGCAATGGCAAT+GGG | 0.513149 | 3_4:+73953933 | None:intergenic |
ACAGGTGGAACTTTGTCGGC+AGG | 0.532728 | 3_4:-73951585 | Msa0521290:CDS |
TAAATATTTGCTCAAAGGAA+AGG | 0.535738 | 3_4:-73953962 | Msa0521290:five_prime_UTR |
AGTAATAAATATTTGCTCAA+AGG | 0.536448 | 3_4:-73953967 | Msa0521290:five_prime_UTR |
GGGAGATGTGTTGCAATCTA+GGG | 0.544429 | 3_4:+73953758 | None:intergenic |
GGCTATAGTTATCGACGACT+TGG | 0.544698 | 3_4:-73951613 | Msa0521290:CDS |
CATGTCGGCGCTGTCCAACC+TGG | 0.547674 | 3_4:-73951642 | Msa0521290:CDS |
CAACTGCAATGCAATGGCAA+TGG | 0.550519 | 3_4:+73953932 | None:intergenic |
CGCAAACCTCGCAAGCTACC+GGG | 0.550896 | 3_4:-73953126 | Msa0521290:intron |
CATTAGAATGTAGCGTGTGG+TGG | 0.552393 | 3_4:-73954022 | Msa0521290:five_prime_UTR |
GAATGTAGCGTGTGGTGGGG+TGG | 0.556798 | 3_4:-73954017 | Msa0521290:five_prime_UTR |
GGCTCCACAAGCACATAAAG+TGG | 0.560359 | 3_4:+73950635 | None:intergenic |
CTGAGCCATACCTTAACCTC+AGG | 0.561630 | 3_4:+73951376 | None:intergenic |
ATAACTATAGCCCGTTCACC+AGG | 0.563626 | 3_4:+73951624 | None:intergenic |
ACGTGCTAAGGCTGAAGTAG+TGG | 0.569286 | 3_4:-73951422 | Msa0521290:CDS |
ATTAGAATGTAGCGTGTGGT+GGG | 0.569665 | 3_4:-73954021 | Msa0521290:five_prime_UTR |
AAAGCCACTTTATGTGCTTG+TGG | 0.574929 | 3_4:-73950639 | Msa0521290:CDS |
GTTGTACCCGGTAGCTTGCG+AGG | 0.575231 | 3_4:+73953120 | None:intergenic |
TCGGCAAACATTCTGTGTGG+TGG | 0.577777 | 3_4:+73953802 | None:intergenic |
GACGACTTGGTTGCAACAGG+TGG | 0.588976 | 3_4:-73951600 | Msa0521290:CDS |
CAATTATGTAGAACGTGCTA+AGG | 0.591327 | 3_4:-73951434 | Msa0521290:intron |
GAAGTGAGGGACGACTCTGA+TGG | 0.595744 | 3_4:+73953732 | None:intergenic |
TATTTATTCTGTGAAGTGTG+AGG | 0.604185 | 3_4:+73953870 | None:intergenic |
CTATAGCCCGTTCACCAGGT+TGG | 0.604880 | 3_4:+73951628 | None:intergenic |
TTGTGTGATTGGTGTGCCTG+AGG | 0.609251 | 3_4:-73951392 | Msa0521290:CDS |
ATGCAGGAATTGAAGCAAGA+GGG | 0.621946 | 3_4:-73953203 | Msa0521290:intron |
GTGTGCCTGAGGTTAAGGTA+TGG | 0.624449 | 3_4:-73951381 | Msa0521290:CDS |
GACATTGTTGTTAGATCACA+AGG | 0.630489 | 3_4:-73953445 | Msa0521290:CDS |
TTATTCTGTGAAGTGTGAGG+AGG | 0.635065 | 3_4:+73953873 | None:intergenic |
TATGCAGGAATTGAAGCAAG+AGG | 0.643982 | 3_4:-73953204 | Msa0521290:intron |
AGGGACGACTCTGATGGACT+GGG | 0.649098 | 3_4:+73953738 | None:intergenic |
ATGCTGCAACTGCAATGCAA+TGG | 0.650406 | 3_4:+73953926 | None:intergenic |
GATTGTTTAGAAATGCATGT+CGG | 0.652967 | 3_4:-73951657 | Msa0521290:CDS |
TCTTCGGCAAACATTCTGTG+TGG | 0.661008 | 3_4:+73953799 | None:intergenic |
TTAGAATGTAGCGTGTGGTG+GGG | 0.677097 | 3_4:-73954020 | Msa0521290:five_prime_UTR |
AAGCATTCATCTACTTGACG+TGG | 0.677392 | 3_4:+73950614 | None:intergenic |
GAGCATTAGAATGTAGCGTG+TGG | 0.693426 | 3_4:-73954025 | Msa0521290:five_prime_UTR |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TAAATAAATAAATAAATAAA+TGG | + | chr3_4:73951986-73952005 | None:intergenic | 0.0% |
!! | AAAAAACTAAGTAATAAAAT+GGG | - | chr3_4:73951082-73951101 | Msa0521290:intron | 10.0% |
!!! | AAAAGAGAAATTTTTTATTT+TGG | - | chr3_4:73951358-73951377 | Msa0521290:intron | 10.0% |
!!! | AAAGAGAAATTTTTTATTTT+GGG | - | chr3_4:73951359-73951378 | Msa0521290:intron | 10.0% |
!! | TTTATTTATATTTATTTAGG+AGG | - | chr3_4:73951785-73951804 | Msa0521290:intron | 10.0% |
!! | TTATTTATATTTATTTAGGA+GGG | - | chr3_4:73951786-73951805 | Msa0521290:intron | 10.0% |
!!! | TATTTGTATTTATTCATTTT+TGG | + | chr3_4:73953380-73953399 | None:intergenic | 10.0% |
!!! | ATTTGTATTTATTCATTTTT+TGG | + | chr3_4:73953379-73953398 | None:intergenic | 10.0% |
!!! | AGAATAAATATAATCAGTTT+TGG | - | chr3_4:73950781-73950800 | Msa0521290:intron | 15.0% |
!!! | GAATAAATATAATCAGTTTT+GGG | - | chr3_4:73950782-73950801 | Msa0521290:intron | 15.0% |
!! | ATTAAATAAGAAAAAAAGGA+AGG | + | chr3_4:73950963-73950982 | None:intergenic | 15.0% |
!! | CAAAAAACTAAGTAATAAAA+TGG | - | chr3_4:73951081-73951100 | Msa0521290:intron | 15.0% |
!! | ACAGAAATTAAATAAAAAAG+GGG | + | chr3_4:73951388-73951407 | None:intergenic | 15.0% |
!! | CACAGAAATTAAATAAAAAA+GGG | + | chr3_4:73951389-73951408 | None:intergenic | 15.0% |
!! | TCACAGAAATTAAATAAAAA+AGG | + | chr3_4:73951390-73951409 | None:intergenic | 15.0% |
!!! | ACTTTTTCTTATATTTAGTA+CGG | + | chr3_4:73951692-73951711 | None:intergenic | 15.0% |
!! | TACTAAATATAAGAAAAAGT+TGG | - | chr3_4:73951692-73951711 | Msa0521290:CDS | 15.0% |
!! | ACTAAATATAAGAAAAAGTT+GGG | - | chr3_4:73951693-73951712 | Msa0521290:CDS | 15.0% |
!! | AATAAAAATGTTGATGTATT+TGG | + | chr3_4:73951757-73951776 | None:intergenic | 15.0% |
!! | TATTTATATTTATTTAGGAG+GGG | - | chr3_4:73951787-73951806 | Msa0521290:intron | 15.0% |
!!! | AATAAACTCAAACAAAATTT+TGG | + | chr3_4:73951848-73951867 | None:intergenic | 15.0% |
!!! | TTAAATTTCTATCTTGTTAT+AGG | - | chr3_4:73953516-73953535 | Msa0521290:intron | 15.0% |
!! | TTCAAATAAGATTAATAACA+AGG | + | chr3_4:73953917-73953936 | None:intergenic | 15.0% |
!! | AGTAATAAATATTTGCTCAA+AGG | - | chr3_4:73950671-73950690 | Msa0521290:CDS | 20.0% |
!!! | AGAAAAGAAAACCATTTTTA+GGG | + | chr3_4:73950931-73950950 | None:intergenic | 20.0% |
!!! | AAGAAAAGAAAACCATTTTT+AGG | + | chr3_4:73950932-73950951 | None:intergenic | 20.0% |
!! | TTCTGTGATTTAATGTAATT+AGG | - | chr3_4:73951402-73951421 | Msa0521290:CDS | 20.0% |
!! | TGATTTAATGTAATTAGGTT+TGG | - | chr3_4:73951407-73951426 | Msa0521290:CDS | 20.0% |
!!! | CTTTTTCTTATATTTAGTAC+GGG | + | chr3_4:73951691-73951710 | None:intergenic | 20.0% |
!! | GAGTTTATTCAAAGAATATT+AGG | - | chr3_4:73951859-73951878 | Msa0521290:intron | 20.0% |
!! | AATAAACACTTTCGATATAA+AGG | - | chr3_4:73952008-73952027 | Msa0521290:intron | 20.0% |
!! | TTGCCAATATATATACTATT+CGG | - | chr3_4:73952364-73952383 | Msa0521290:intron | 20.0% |
!! | AATATATATACTATTCGGTA+CGG | - | chr3_4:73952369-73952388 | Msa0521290:intron | 20.0% |
!!! | CAATATTTTCAAATTGATCA+TGG | - | chr3_4:73952392-73952411 | Msa0521290:intron | 20.0% |
!! | TAAGTTGTATGTTATATGAT+AGG | - | chr3_4:73952618-73952637 | Msa0521290:intron | 20.0% |
!! | AAGTTGTATGTTATATGATA+GGG | - | chr3_4:73952619-73952638 | Msa0521290:intron | 20.0% |
!! | ACATATACTATTTAACTCAA+AGG | + | chr3_4:73952732-73952751 | None:intergenic | 20.0% |
!! | TGAGTTAAATAGTATATGTT+TGG | - | chr3_4:73952733-73952752 | Msa0521290:intron | 20.0% |
!! | TAAATAGTATATGTTTGGTT+TGG | - | chr3_4:73952738-73952757 | Msa0521290:intron | 20.0% |
!! | AATGAAACATATCAAAGTTT+AGG | + | chr3_4:73952915-73952934 | None:intergenic | 20.0% |
!!! | GAAAAATATTCTCTAGAATA+CGG | - | chr3_4:73952954-73952973 | Msa0521290:intron | 20.0% |
!! | TTATAATTGTTCATTGAATC+TGG | - | chr3_4:73953145-73953164 | Msa0521290:CDS | 20.0% |
!!! | AAGAAAGCATAAAGTATATT+GGG | + | chr3_4:73953179-73953198 | None:intergenic | 20.0% |
!!! | AAAGAAAGCATAAAGTATAT+TGG | + | chr3_4:73953180-73953199 | None:intergenic | 20.0% |
!!! | TGAAATTTCTATCTTGTTAT+AGG | - | chr3_4:73953328-73953347 | Msa0521290:intron | 20.0% |
!!! | AATCTTATTTGAAATCATGA+TGG | - | chr3_4:73953924-73953943 | Msa0521290:five_prime_UTR | 20.0% |
! | TAAATATTTGCTCAAAGGAA+AGG | - | chr3_4:73950676-73950695 | Msa0521290:CDS | 25.0% |
!!! | TAAATATAATCAGTTTTGGG+AGG | - | chr3_4:73950785-73950804 | Msa0521290:intron | 25.0% |
!!! | AAATATAATCAGTTTTGGGA+GGG | - | chr3_4:73950786-73950805 | Msa0521290:intron | 25.0% |
!! | TTAATGTAATTAGGTTTGGT+TGG | - | chr3_4:73951411-73951430 | Msa0521290:CDS | 25.0% |
!! | AGTAGTACTAAACTTTTATG+TGG | - | chr3_4:73951619-73951638 | Msa0521290:CDS | 25.0% |
!! | TACTAAACTTTTATGTGGAA+TGG | - | chr3_4:73951624-73951643 | Msa0521290:CDS | 25.0% |
!! | ACTAAACTTTTATGTGGAAT+GGG | - | chr3_4:73951625-73951644 | Msa0521290:CDS | 25.0% |
! | TGATGTATGAATATTCAATG+TGG | - | chr3_4:73952221-73952240 | Msa0521290:intron | 25.0% |
! | GATGTATGAATATTCAATGT+GGG | - | chr3_4:73952222-73952241 | Msa0521290:intron | 25.0% |
! | GTACCGAATAGTATATATAT+TGG | + | chr3_4:73952370-73952389 | None:intergenic | 25.0% |
! | TGATTCATACAATTTCAATC+AGG | + | chr3_4:73952523-73952542 | None:intergenic | 25.0% |
! | TTCTGTTTAACCAAACTAAT+TGG | - | chr3_4:73952582-73952601 | Msa0521290:intron | 25.0% |
! | TCTGTTTAACCAAACTAATT+GGG | - | chr3_4:73952583-73952602 | Msa0521290:intron | 25.0% |
!! | ATGTTATATGATAGGGATTT+TGG | - | chr3_4:73952626-73952645 | Msa0521290:intron | 25.0% |
! | AAATCATCGTCAATAATCAT+TGG | + | chr3_4:73952788-73952807 | None:intergenic | 25.0% |
!! | CTTTGATATGTTTCATTTTC+AGG | - | chr3_4:73952918-73952937 | Msa0521290:intron | 25.0% |
!! | AGAAAGCATAAAGTATATTG+GGG | + | chr3_4:73953178-73953197 | None:intergenic | 25.0% |
! | TAACAAGATAGAAATTTCAG+AGG | + | chr3_4:73953327-73953346 | None:intergenic | 25.0% |
!! | AAACAAATTTGAAGTCCAAT+AGG | + | chr3_4:73953450-73953469 | None:intergenic | 25.0% |
! | TATGTACAACAAATTTGAAG+TGG | + | chr3_4:73953640-73953659 | None:intergenic | 25.0% |
! | TTAAAAATGTTAAGGAGAGT+TGG | + | chr3_4:73953849-73953868 | None:intergenic | 25.0% |
TATTTATTCTGTGAAGTGTG+AGG | + | chr3_4:73950771-73950790 | None:intergenic | 30.0% | |
AGAAAAAAAGGAAGGAAAGA+AGG | + | chr3_4:73950955-73950974 | None:intergenic | 30.0% | |
ACTAAGTAATAAAATGGGTC+TGG | - | chr3_4:73951087-73951106 | Msa0521290:intron | 30.0% | |
CTAAGTAATAAAATGGGTCT+GGG | - | chr3_4:73951088-73951107 | Msa0521290:intron | 30.0% | |
! | CACAAAAATGTGTAATTTGC+AGG | - | chr3_4:73951149-73951168 | Msa0521290:intron | 30.0% |
ACAAAAAAAGTAGTGCATGA+GGG | + | chr3_4:73951305-73951324 | None:intergenic | 30.0% | |
AACAAAAAAAGTAGTGCATG+AGG | + | chr3_4:73951306-73951325 | None:intergenic | 30.0% | |
TTTCTTATATTTAGTACGGG+AGG | + | chr3_4:73951688-73951707 | None:intergenic | 30.0% | |
TATATTTATTTAGGAGGGGA+TGG | - | chr3_4:73951791-73951810 | Msa0521290:intron | 30.0% | |
TTCCATCACATAAAGTCAAT+TGG | - | chr3_4:73952085-73952104 | Msa0521290:intron | 30.0% | |
ACTTTCCTCTTAGATATTGT+GGG | + | chr3_4:73952141-73952160 | None:intergenic | 30.0% | |
! | CATCAAATTGATGATCAGAT+TGG | - | chr3_4:73952418-73952437 | Msa0521290:intron | 30.0% |
TTCATACAATTTCAATCAGG+AGG | + | chr3_4:73952520-73952539 | None:intergenic | 30.0% | |
TGAAATTGTATGAATCAACC+AGG | - | chr3_4:73952526-73952545 | Msa0521290:intron | 30.0% | |
CTGTTTAACCAAACTAATTG+GGG | - | chr3_4:73952584-73952603 | Msa0521290:intron | 30.0% | |
AAATTAAGCCCCAATTAGTT+TGG | + | chr3_4:73952595-73952614 | None:intergenic | 30.0% | |
AAACTAATTGGGGCTTAATT+TGG | - | chr3_4:73952594-73952613 | Msa0521290:intron | 30.0% | |
TAGATACGTTCTACAATTCA+GGG | + | chr3_4:73952819-73952838 | None:intergenic | 30.0% | |
ATAGATACGTTCTACAATTC+AGG | + | chr3_4:73952820-73952839 | None:intergenic | 30.0% | |
GATTGTTTAGAAATGCATGT+CGG | - | chr3_4:73952981-73953000 | Msa0521290:intron | 30.0% | |
!! | AGGAATAAAACTTTTAGGTG+TGG | - | chr3_4:73953073-73953092 | Msa0521290:intron | 30.0% |
ATAAGTCAAAAAATGACGCA+GGG | + | chr3_4:73953129-73953148 | None:intergenic | 30.0% | |
TATAAGTCAAAAAATGACGC+AGG | + | chr3_4:73953130-73953149 | None:intergenic | 30.0% | |
AGGTACTCTTAAAAGCTTAA+AGG | - | chr3_4:73953348-73953367 | Msa0521290:intron | 30.0% | |
! | CTGAATTATTGATAGCCTAT+TGG | - | chr3_4:73953432-73953451 | Msa0521290:CDS | 30.0% |
! | GTTAAGACCTTTAAGCTTTT+AGG | + | chr3_4:73953546-73953565 | None:intergenic | 30.0% |
! | CAACAAATTTGAAGTGGAAT+AGG | + | chr3_4:73953634-73953653 | None:intergenic | 30.0% |
! | ATATCCTTATAGACTTGCTT+AGG | - | chr3_4:73953696-73953715 | Msa0521290:intron | 30.0% |
! | TATCCTTATAGACTTGCTTA+GGG | - | chr3_4:73953697-73953716 | Msa0521290:intron | 30.0% |
!!! | TAATGAAGCCTTCTTTTTTC+AGG | - | chr3_4:73953957-73953976 | Msa0521290:five_prime_UTR | 30.0% |
!!! | AATGAAGCCTTCTTTTTTCA+GGG | - | chr3_4:73953958-73953977 | Msa0521290:five_prime_UTR | 30.0% |
AGAATGTTTGCCGAAGAAAA+TGG | - | chr3_4:73950845-73950864 | Msa0521290:intron | 35.0% | |
! | ACCCTTAAGACCATTTTCTT+CGG | + | chr3_4:73950858-73950877 | None:intergenic | 35.0% |
!! | AACCATTTTTAGGGAAGTGA+GGG | + | chr3_4:73950922-73950941 | None:intergenic | 35.0% |
!! | AAACCATTTTTAGGGAAGTG+AGG | + | chr3_4:73950923-73950942 | None:intergenic | 35.0% |
TCATGCAGTTTCTATCAGAA+TGG | - | chr3_4:73951013-73951032 | Msa0521290:intron | 35.0% | |
ATAAAGAGTTGCAGATCTGT+TGG | + | chr3_4:73951047-73951066 | None:intergenic | 35.0% | |
! | GACATTGTTGTTAGATCACA+AGG | - | chr3_4:73951193-73951212 | Msa0521290:intron | 35.0% |
ATGAACAGAAATGTTGTACC+CGG | + | chr3_4:73951533-73951552 | None:intergenic | 35.0% | |
! | AACTTTTATGTGGAATGGGA+TGG | - | chr3_4:73951629-73951648 | Msa0521290:CDS | 35.0% |
TTATATTTAGTACGGGAGGA+GGG | + | chr3_4:73951684-73951703 | None:intergenic | 35.0% | |
ATGTGATGTTCATTACTGTG+TGG | - | chr3_4:73951897-73951916 | Msa0521290:intron | 35.0% | |
TTTCGATATAAAGGCTGTCA+TGG | - | chr3_4:73952017-73952036 | Msa0521290:intron | 35.0% | |
! | AGCCAATTGACTTTATGTGA+TGG | + | chr3_4:73952090-73952109 | None:intergenic | 35.0% |
!! | ATATTGTGGGCTAGTTAACT+AGG | + | chr3_4:73952128-73952147 | None:intergenic | 35.0% |
CACTTTCCTCTTAGATATTG+TGG | + | chr3_4:73952142-73952161 | None:intergenic | 35.0% | |
AGTGAAACAAATGTATGTGC+TGG | - | chr3_4:73952286-73952305 | Msa0521290:intron | 35.0% | |
! | TTTTTCCTCTTGATCTGCAT+TGG | - | chr3_4:73952335-73952354 | Msa0521290:intron | 35.0% |
! | TTTTCCTCTTGATCTGCATT+GGG | - | chr3_4:73952336-73952355 | Msa0521290:intron | 35.0% |
AATTGTATGAATCAACCAGG+TGG | - | chr3_4:73952529-73952548 | Msa0521290:intron | 35.0% | |
TGGAGGTAAACGTATCTAAT+TGG | - | chr3_4:73952549-73952568 | Msa0521290:intron | 35.0% | |
TTGATTGAACTTAAGCACAC+TGG | + | chr3_4:73952666-73952685 | None:intergenic | 35.0% | |
!! | TATATGTTTGGTTTGGTAGC+TGG | - | chr3_4:73952745-73952764 | Msa0521290:intron | 35.0% |
! | TCGGCAGGAATAAAACTTTT+AGG | - | chr3_4:73953068-73953087 | Msa0521290:intron | 35.0% |
TAAGTCAAAAAATGACGCAG+GGG | + | chr3_4:73953128-73953147 | None:intergenic | 35.0% | |
! | TTGTTCATTGAATCTGGTTC+TGG | - | chr3_4:73953151-73953170 | Msa0521290:CDS | 35.0% |
CTTAGCACGTTCTACATAAT+TGG | + | chr3_4:73953206-73953225 | None:intergenic | 35.0% | |
CAATTATGTAGAACGTGCTA+AGG | - | chr3_4:73953204-73953223 | Msa0521290:intron | 35.0% | |
AGGTACTCCTAAAAGCTTAA+AGG | - | chr3_4:73953536-73953555 | Msa0521290:intron | 35.0% | |
ATTACTTGTTCACTTGTGCT+CGG | + | chr3_4:73953678-73953697 | None:intergenic | 35.0% | |
TAACCCTAAGCAAGTCTATA+AGG | + | chr3_4:73953703-73953722 | None:intergenic | 35.0% | |
ATTAGAATGTAGCGTGTGGT+GGG | - | chr3_4:73950617-73950636 | Msa0521290:CDS | 40.0% | |
AACTGCAATGCAATGGCAAT+GGG | + | chr3_4:73950708-73950727 | None:intergenic | 40.0% | |
TTATTCTGTGAAGTGTGAGG+AGG | + | chr3_4:73950768-73950787 | None:intergenic | 40.0% | |
! | TGCCGAAGAAAATGGTCTTA+AGG | - | chr3_4:73950853-73950872 | Msa0521290:intron | 40.0% |
! | GCCGAAGAAAATGGTCTTAA+GGG | - | chr3_4:73950854-73950873 | Msa0521290:intron | 40.0% |
ATGCACATTTCAGTTGTTGC+TGG | - | chr3_4:73951260-73951279 | Msa0521290:intron | 40.0% | |
CATTTCAGTTGTTGCTGGTA+TGG | - | chr3_4:73951265-73951284 | Msa0521290:intron | 40.0% | |
AAAAAGTAGTGCATGAGGGA+GGG | + | chr3_4:73951301-73951320 | None:intergenic | 40.0% | |
AAAAAAGTAGTGCATGAGGG+AGG | + | chr3_4:73951302-73951321 | None:intergenic | 40.0% | |
! | ATTAGGTTTGGTTGGTATGC+AGG | - | chr3_4:73951419-73951438 | Msa0521290:CDS | 40.0% |
TATGCAGGAATTGAAGCAAG+AGG | - | chr3_4:73951434-73951453 | Msa0521290:intron | 40.0% | |
ATGCAGGAATTGAAGCAAGA+GGG | - | chr3_4:73951435-73951454 | Msa0521290:intron | 40.0% | |
CAAGTTTCAGCAGCTAAAAG+TGG | + | chr3_4:73951597-73951616 | None:intergenic | 40.0% | |
CTTATATTTAGTACGGGAGG+AGG | + | chr3_4:73951685-73951704 | None:intergenic | 40.0% | |
! | AGGGGATGGAGTATTATCTT+TGG | - | chr3_4:73951805-73951824 | Msa0521290:intron | 40.0% |
TGATGTTCATTACTGTGTGG+AGG | - | chr3_4:73951900-73951919 | Msa0521290:intron | 40.0% | |
! | TGTGATGGAACAACCAAAGT+AGG | + | chr3_4:73952075-73952094 | None:intergenic | 40.0% |
ACTAGCCCACAATATCTAAG+AGG | - | chr3_4:73952133-73952152 | Msa0521290:intron | 40.0% | |
! | GCTGGTATTGTTGCTTAGTT+TGG | - | chr3_4:73952304-73952323 | Msa0521290:intron | 40.0% |
AGGAGTGATCAAGTTACTTC+AGG | + | chr3_4:73952500-73952519 | None:intergenic | 40.0% | |
! | GTCTTTGTTTGCATTCACAG+TGG | + | chr3_4:73952872-73952891 | None:intergenic | 40.0% |
TTACTTGTTCACTTGTGCTC+GGG | + | chr3_4:73953677-73953696 | None:intergenic | 40.0% | |
TTCTCCTGTTGTCGATATGA+GGG | - | chr3_4:73953739-73953758 | Msa0521290:CDS | 40.0% | |
ATCAATGATGTGCGGTGTAA+AGG | + | chr3_4:73953791-73953810 | None:intergenic | 40.0% | |
GGAAAAGGATCAATGATGTG+CGG | + | chr3_4:73953799-73953818 | None:intergenic | 40.0% | |
!!! | AAGCCTTCTTTTTTCAGGGA+CGG | - | chr3_4:73953962-73953981 | Msa0521290:five_prime_UTR | 40.0% |
! | AAAGCCACTTTATGTGCTTG+TGG | - | chr3_4:73953999-73954018 | Msa0521290:five_prime_UTR | 40.0% |
AAGCATTCATCTACTTGACG+TGG | + | chr3_4:73954027-73954046 | None:intergenic | 40.0% | |
GAGCATTAGAATGTAGCGTG+TGG | - | chr3_4:73950613-73950632 | Msa0521290:CDS | 45.0% | |
CATTAGAATGTAGCGTGTGG+TGG | - | chr3_4:73950616-73950635 | Msa0521290:CDS | 45.0% | |
TTAGAATGTAGCGTGTGGTG+GGG | - | chr3_4:73950618-73950637 | Msa0521290:CDS | 45.0% | |
CAACTGCAATGCAATGGCAA+TGG | + | chr3_4:73950709-73950728 | None:intergenic | 45.0% | |
ATGCTGCAACTGCAATGCAA+TGG | + | chr3_4:73950715-73950734 | None:intergenic | 45.0% | |
TCTTCGGCAAACATTCTGTG+TGG | + | chr3_4:73950842-73950861 | None:intergenic | 45.0% | |
GGGAGATGTGTTGCAATCTA+GGG | + | chr3_4:73950883-73950902 | None:intergenic | 45.0% | |
TGGGAGATGTGTTGCAATCT+AGG | + | chr3_4:73950884-73950903 | None:intergenic | 45.0% | |
GTCCCTCACTTCCCTAAAAA+TGG | - | chr3_4:73950917-73950936 | Msa0521290:intron | 45.0% | |
!! | CTGGGTGTTTTTGTCTGTGT+TGG | - | chr3_4:73951106-73951125 | Msa0521290:intron | 45.0% |
GAAGCAAGAGGGTTTGTGTT+TGG | - | chr3_4:73951446-73951465 | Msa0521290:intron | 45.0% | |
!! | TTTGGTTCTGCAGTTGCGTT+GGG | - | chr3_4:73951464-73951483 | Msa0521290:intron | 45.0% |
GGAACAACCAAAGTAGGACA+AGG | + | chr3_4:73952069-73952088 | None:intergenic | 45.0% | |
TTGACCCAATGCAGATCAAG+AGG | + | chr3_4:73952343-73952362 | None:intergenic | 45.0% | |
TGTATGAATCAACCAGGTGG+AGG | - | chr3_4:73952532-73952551 | Msa0521290:intron | 45.0% | |
TAGATACGTTTACCTCCACC+TGG | + | chr3_4:73952547-73952566 | None:intergenic | 45.0% | |
TGAGTTATTCCACTGTGCTG+CGG | - | chr3_4:73952842-73952861 | Msa0521290:intron | 45.0% | |
ATAACTATAGCCCGTTCACC+AGG | + | chr3_4:73953017-73953036 | None:intergenic | 45.0% | |
GGCTATAGTTATCGACGACT+TGG | - | chr3_4:73953025-73953044 | Msa0521290:intron | 45.0% | |
TGCAACAGGTGGAACTTTGT+CGG | - | chr3_4:73953049-73953068 | Msa0521290:intron | 45.0% | |
GTGGAATGTGCTTGTGTGAT+TGG | - | chr3_4:73953235-73953254 | Msa0521290:intron | 45.0% | |
CTTCTCCTGTTGTCGATATG+AGG | - | chr3_4:73953738-73953757 | Msa0521290:CDS | 45.0% | |
TTAAGGAGAGTTGGATCTCC+AGG | + | chr3_4:73953840-73953859 | None:intergenic | 45.0% | |
ACACCGTCCCTGAAAAAAGA+AGG | + | chr3_4:73953968-73953987 | None:intergenic | 45.0% | |
!! | TAAAATTAAATAAGAAAAAA+AGG | + | chr3_4:73950967-73950986 | None:intergenic | 5.0% |
!! | AAATAAATATAAATAAAGTT+AGG | + | chr3_4:73951782-73951801 | None:intergenic | 5.0% |
!!! | AACTTTATTTATATTTATTT+AGG | - | chr3_4:73951782-73951801 | Msa0521290:intron | 5.0% |
!!! | ATTTTTTATTAAAAATGTTA+AGG | + | chr3_4:73953857-73953876 | None:intergenic | 5.0% |
!!! | ATCAGTTTTGGGAGGGAGTG+AGG | - | chr3_4:73950793-73950812 | Msa0521290:intron | 50.0% |
!!! | TCAGTTTTGGGAGGGAGTGA+GGG | - | chr3_4:73950794-73950813 | Msa0521290:intron | 50.0% |
TCGGCAAACATTCTGTGTGG+TGG | + | chr3_4:73950839-73950858 | None:intergenic | 50.0% | |
!! | GTTTGGTTCTGCAGTTGCGT+TGG | - | chr3_4:73951463-73951482 | Msa0521290:intron | 50.0% |
TCTGCAGTTGCGTTGGGAAT+TGG | - | chr3_4:73951470-73951489 | Msa0521290:intron | 50.0% | |
AGCTTGCGAGGTTTGCGTAA+AGG | + | chr3_4:73951509-73951528 | None:intergenic | 50.0% | |
TGGGATGGCCCATTTGACAA+CGG | - | chr3_4:73951644-73951663 | Msa0521290:CDS | 50.0% | |
CACCAACCCCGTTGTCAAAT+GGG | + | chr3_4:73951655-73951674 | None:intergenic | 50.0% | |
ACACCAACCCCGTTGTCAAA+TGG | + | chr3_4:73951656-73951675 | None:intergenic | 50.0% | |
! | AAAGGCTGTCATGGTCTTGC+TGG | - | chr3_4:73952026-73952045 | Msa0521290:intron | 50.0% |
! | AAGGCTGTCATGGTCTTGCT+GGG | - | chr3_4:73952027-73952046 | Msa0521290:intron | 50.0% |
! | GGAAAGGCCTTGTCCTACTT+TGG | - | chr3_4:73952059-73952078 | Msa0521290:intron | 50.0% |
!! | ATCGACGACTTGGTTGCAAC+AGG | - | chr3_4:73953035-73953054 | Msa0521290:intron | 50.0% |
ACGTGCTAAGGCTGAAGTAG+TGG | - | chr3_4:73953216-73953235 | Msa0521290:intron | 50.0% | |
TTGTGTGATTGGTGTGCCTG+AGG | - | chr3_4:73953246-73953265 | Msa0521290:intron | 50.0% | |
GATTGGTGTGCCTGAGGTTA+AGG | - | chr3_4:73953252-73953271 | Msa0521290:intron | 50.0% | |
GTGTGCCTGAGGTTAAGGTA+TGG | - | chr3_4:73953257-73953276 | Msa0521290:intron | 50.0% | |
CTGAGCCATACCTTAACCTC+AGG | + | chr3_4:73953265-73953284 | None:intergenic | 50.0% | |
GTAGCCCTCATATCGACAAC+AGG | + | chr3_4:73953746-73953765 | None:intergenic | 50.0% | |
TGTCGATATGAGGGCTACGT+TGG | - | chr3_4:73953748-73953767 | Msa0521290:CDS | 50.0% | |
CAGGGACGGTGTAAACTTCT+TGG | - | chr3_4:73953976-73953995 | Msa0521290:five_prime_UTR | 50.0% | |
GGCTCCACAAGCACATAAAG+TGG | + | chr3_4:73954006-73954025 | None:intergenic | 50.0% | |
! | GAGTGACGCTTGCTTGCTGA+TGG | - | chr3_4:73950643-73950662 | Msa0521290:CDS | 55.0% |
!! | TTTTGGGAGGGAGTGAGGGA+GGG | - | chr3_4:73950798-73950817 | Msa0521290:intron | 55.0% |
!! | AGGGACGACTCTGATGGACT+GGG | + | chr3_4:73950903-73950922 | None:intergenic | 55.0% |
GAAGTGAGGGACGACTCTGA+TGG | + | chr3_4:73950909-73950928 | None:intergenic | 55.0% | |
ACGCAAACCTCGCAAGCTAC+CGG | - | chr3_4:73951511-73951530 | Msa0521290:intron | 55.0% | |
GGGATGGCCCATTTGACAAC+GGG | - | chr3_4:73951645-73951664 | Msa0521290:CDS | 55.0% | |
GGATGGCCCATTTGACAACG+GGG | - | chr3_4:73951646-73951665 | Msa0521290:CDS | 55.0% | |
TGCTGGGACTGTGTGTGGAA+AGG | - | chr3_4:73952043-73952062 | Msa0521290:intron | 55.0% | |
CTATAGCCCGTTCACCAGGT+TGG | + | chr3_4:73953013-73953032 | None:intergenic | 55.0% | |
!! | GACGACTTGGTTGCAACAGG+TGG | - | chr3_4:73953038-73953057 | Msa0521290:intron | 55.0% |
ACAGGTGGAACTTTGTCGGC+AGG | - | chr3_4:73953053-73953072 | Msa0521290:intron | 55.0% | |
! | TCCTTTTCCTGACCCTGCCT+TGG | - | chr3_4:73953810-73953829 | Msa0521290:exon | 55.0% |
ACCAAGGCAGGGTCAGGAAA+AGG | + | chr3_4:73953814-73953833 | None:intergenic | 55.0% | |
TTGGATCTCCAGGCACACCA+AGG | + | chr3_4:73953830-73953849 | None:intergenic | 55.0% | |
! | GAATGTAGCGTGTGGTGGGG+TGG | - | chr3_4:73950621-73950640 | Msa0521290:CDS | 60.0% |
!!! | GTTTTGGGAGGGAGTGAGGG+AGG | - | chr3_4:73950797-73950816 | Msa0521290:intron | 60.0% |
! | GAGGGACGACTCTGATGGAC+TGG | + | chr3_4:73950904-73950923 | None:intergenic | 60.0% |
CGCAAACCTCGCAAGCTACC+GGG | - | chr3_4:73951512-73951531 | Msa0521290:intron | 60.0% | |
! | GTTGTACCCGGTAGCTTGCG+AGG | + | chr3_4:73951521-73951540 | None:intergenic | 60.0% |
GGCCCATTTGACAACGGGGT+TGG | - | chr3_4:73951650-73951669 | Msa0521290:CDS | 60.0% | |
GGTCTTGCTGGGACTGTGTG+TGG | - | chr3_4:73952038-73952057 | Msa0521290:intron | 60.0% | |
AGTGGAATGCCGCAGCACAG+TGG | + | chr3_4:73952854-73952873 | None:intergenic | 60.0% | |
GCGCTGTCCAACCTGGTGAA+CGG | - | chr3_4:73953003-73953022 | Msa0521290:intron | 60.0% | |
CGCTGTCCAACCTGGTGAAC+GGG | - | chr3_4:73953004-73953023 | Msa0521290:intron | 60.0% | |
TCTCCAGGCACACCAAGGCA+GGG | + | chr3_4:73953825-73953844 | None:intergenic | 60.0% | |
ATCTCCAGGCACACCAAGGC+AGG | + | chr3_4:73953826-73953845 | None:intergenic | 60.0% | |
CATGTCGGCGCTGTCCAACC+TGG | - | chr3_4:73952996-73953015 | Msa0521290:intron | 65.0% | |
AGGCACACCAAGGCAGGGTC+AGG | + | chr3_4:73953820-73953839 | None:intergenic | 65.0% | |
! | TGACCCTGCCTTGGTGTGCC+TGG | - | chr3_4:73953819-73953838 | Msa0521290:five_prime_UTR | 65.0% |
TGGGAGGGAGTGAGGGAGGG+AGG | - | chr3_4:73950801-73950820 | Msa0521290:intron | 70.0% | |
GGGAGGGAGTGAGGGAGGGA+GGG | - | chr3_4:73950802-73950821 | Msa0521290:intron | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3_4 | gene | 73950610 | 73954050 | 73950610 | ID=Msa0521290;Name=Msa0521290 |
chr3_4 | mRNA | 73950610 | 73954050 | 73950610 | ID=Msa0521290-mRNA-1;Parent=Msa0521290;Name=Msa0521290-mRNA-1;_AED=0.32;_eAED=0.32;_QI=238|0.8|0.66|1|0.8|0.83|6|0|201 |
chr3_4 | exon | 73950610 | 73950695 | 73950610 | ID=Msa0521290-mRNA-1:exon:20909;Parent=Msa0521290-mRNA-1 |
chr3_4 | exon | 73951371 | 73951445 | 73951371 | ID=Msa0521290-mRNA-1:exon:20908;Parent=Msa0521290-mRNA-1 |
chr3_4 | exon | 73951571 | 73951720 | 73951571 | ID=Msa0521290-mRNA-1:exon:20907;Parent=Msa0521290-mRNA-1 |
chr3_4 | exon | 73953127 | 73953219 | 73953127 | ID=Msa0521290-mRNA-1:exon:20906;Parent=Msa0521290-mRNA-1 |
chr3_4 | exon | 73953379 | 73953489 | 73953379 | ID=Msa0521290-mRNA-1:exon:20905;Parent=Msa0521290-mRNA-1 |
chr3_4 | exon | 73953722 | 73954050 | 73953722 | ID=Msa0521290-mRNA-1:exon:20904;Parent=Msa0521290-mRNA-1 |
chr3_4 | five_prime_UTR | 73953813 | 73954050 | 73953813 | ID=Msa0521290-mRNA-1:five_prime_utr;Parent=Msa0521290-mRNA-1 |
chr3_4 | CDS | 73953722 | 73953812 | 73953722 | ID=Msa0521290-mRNA-1:cds;Parent=Msa0521290-mRNA-1 |
chr3_4 | CDS | 73953379 | 73953489 | 73953379 | ID=Msa0521290-mRNA-1:cds;Parent=Msa0521290-mRNA-1 |
chr3_4 | CDS | 73953127 | 73953219 | 73953127 | ID=Msa0521290-mRNA-1:cds;Parent=Msa0521290-mRNA-1 |
chr3_4 | CDS | 73951571 | 73951720 | 73951571 | ID=Msa0521290-mRNA-1:cds;Parent=Msa0521290-mRNA-1 |
chr3_4 | CDS | 73951371 | 73951445 | 73951371 | ID=Msa0521290-mRNA-1:cds;Parent=Msa0521290-mRNA-1 |
chr3_4 | CDS | 73950610 | 73950695 | 73950610 | ID=Msa0521290-mRNA-1:cds;Parent=Msa0521290-mRNA-1 |
Gene Sequence |
Protein sequence |