Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0830760 | KEH27386.1 | 86.096 | 187 | 24 | 2 | 1 | 186 | 67 | 252 | 3.47e-109 | 322 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0830760 | sp|Q8S8T8|PCR10_ARATH | 55.080 | 187 | 77 | 4 | 2 | 182 | 3 | 188 | 7.41e-66 | 203 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0830760 | A0A072UD93 | 86.096 | 187 | 24 | 2 | 1 | 186 | 67 | 252 | 1.66e-109 | 322 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0794420 | Msa0830760 | 0.833040 | 6.698776e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0830760 | MtrunA17_Chr5g0395991 | 83.088 | 136 | 21 | 2 | 52 | 186 | 1 | 135 | 1.37e-74 | 220 |
| Msa0830760 | MtrunA17_Chr5g0395981 | 87.719 | 57 | 7 | 0 | 1 | 57 | 43 | 99 | 7.99e-32 | 110 |
| Msa0830760 | MtrunA17_Chr8g0391441 | 33.333 | 132 | 73 | 4 | 32 | 163 | 25 | 141 | 1.44e-13 | 65.5 |
| Msa0830760 | MtrunA17_Chr3g0079081 | 31.847 | 157 | 89 | 6 | 41 | 182 | 59 | 212 | 9.55e-13 | 64.3 |
| Msa0830760 | MtrunA17_Chr4g0045011 | 30.872 | 149 | 76 | 8 | 38 | 177 | 61 | 191 | 1.15e-11 | 60.8 |
| Msa0830760 | MtrunA17_Chr4g0021021 | 27.976 | 168 | 92 | 6 | 41 | 186 | 31 | 191 | 1.85e-11 | 60.5 |
| Msa0830760 | MtrunA17_Chr8g0391401 | 30.667 | 150 | 85 | 5 | 36 | 182 | 4 | 137 | 4.13e-11 | 58.5 |
| Msa0830760 | MtrunA17_Chr4g0045001 | 30.827 | 133 | 71 | 6 | 32 | 161 | 42 | 156 | 5.79e-11 | 58.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0830760 | AT2G40935.8 | 55.080 | 187 | 77 | 4 | 2 | 182 | 3 | 188 | 7.53e-67 | 203 |
| Msa0830760 | AT2G40935.9 | 55.080 | 187 | 77 | 4 | 2 | 182 | 3 | 188 | 7.53e-67 | 203 |
| Msa0830760 | AT2G40935.1 | 55.080 | 187 | 77 | 4 | 2 | 182 | 3 | 188 | 7.53e-67 | 203 |
| Msa0830760 | AT2G40935.6 | 55.080 | 187 | 77 | 4 | 2 | 182 | 3 | 188 | 7.53e-67 | 203 |
| Msa0830760 | AT2G40935.5 | 55.080 | 187 | 77 | 4 | 2 | 182 | 3 | 188 | 7.53e-67 | 203 |
| Msa0830760 | AT2G40935.3 | 49.198 | 187 | 77 | 5 | 2 | 182 | 3 | 177 | 3.61e-54 | 170 |
| Msa0830760 | AT2G40935.2 | 57.031 | 128 | 53 | 2 | 56 | 182 | 38 | 164 | 2.20e-44 | 145 |
| Msa0830760 | AT2G40935.7 | 57.031 | 128 | 53 | 2 | 56 | 182 | 38 | 164 | 2.20e-44 | 145 |
| Msa0830760 | AT2G40935.4 | 57.031 | 128 | 53 | 2 | 56 | 182 | 38 | 164 | 2.20e-44 | 145 |
| Msa0830760 | AT5G35525.1 | 31.250 | 160 | 81 | 6 | 29 | 177 | 4 | 145 | 3.31e-12 | 61.6 |
| Msa0830760 | AT1G14870.1 | 29.518 | 166 | 85 | 7 | 23 | 177 | 1 | 145 | 1.19e-11 | 60.5 |
| Msa0830760 | AT1G14870.2 | 30.070 | 143 | 79 | 5 | 30 | 169 | 5 | 129 | 3.11e-11 | 58.9 |
Find 57 sgRNAs with CRISPR-Local
Find 199 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGGAAGAATGCAGAATTTC+TGG | 0.136909 | 5_4:-3797287 | Msa0830760:CDS |
| ACAATTTCGTTGATTGAAAT+TGG | 0.137293 | 5_4:+3798758 | None:intergenic |
| CTTTGTCCTTGCTACCTCTT+TGG | 0.163797 | 5_4:-3797307 | Msa0830760:CDS |
| CAAGACTCCACAATATAAAA+TGG | 0.183305 | 5_4:+3797233 | None:intergenic |
| TTATCGAAACATTATGAAAA+AGG | 0.220573 | 5_4:+3798716 | None:intergenic |
| GGATCAAATCAATGGTCTTC+TGG | 0.256294 | 5_4:-3798373 | Msa0830760:CDS |
| ACCTTGGTTCTTCATAATAA+TGG | 0.263710 | 5_4:+3798489 | None:intergenic |
| CTGGGTTCTGGCACGTTCAT+GGG | 0.276161 | 5_4:-3797268 | Msa0830760:CDS |
| CAAATTATACTTTGATCTTA+AGG | 0.284771 | 5_4:+3797120 | None:intergenic |
| GAAACCCGTAAATCAGAAAA+TGG | 0.321254 | 5_4:+3798690 | None:intergenic |
| AATGCAGAATTTCTGGGTTC+TGG | 0.323080 | 5_4:-3797280 | Msa0830760:CDS |
| TTTGTCCTTGCTACCTCTTT+GGG | 0.333564 | 5_4:-3797306 | Msa0830760:CDS |
| AATTAAATTGTTTATAATGT+TGG | 0.351901 | 5_4:+3798652 | None:intergenic |
| GGCTTCTGTGCAGGTTGTAT+AGG | 0.363558 | 5_4:-3797334 | Msa0830760:intron |
| CAGCTCTTTCGCGTATTTCA+CGG | 0.371837 | 5_4:+3796152 | None:intergenic |
| AAGATCAAAGTATAATTTGC+CGG | 0.391461 | 5_4:-3797116 | Msa0830760:intron |
| TGGAATCTGACTGCATTGTC+TGG | 0.399372 | 5_4:+3796077 | None:intergenic |
| GGGAAGAATGCAGAATTTCT+GGG | 0.403517 | 5_4:-3797286 | Msa0830760:CDS |
| TTCACAATCTTGCTTTGTAT+AGG | 0.422872 | 5_4:-3798563 | Msa0830760:five_prime_UTR |
| GTGAAATACGCGAAAGAGCT+GGG | 0.429175 | 5_4:-3796150 | Msa0830760:CDS |
| TCCACCTGCTTACATCCCAT+TGG | 0.441939 | 5_4:-3798458 | Msa0830760:CDS |
| CCACCTGCTTACATCCCATT+GGG | 0.443393 | 5_4:-3798457 | Msa0830760:CDS |
| TAAACAATTTAATTTCTCCT+TGG | 0.445477 | 5_4:-3798643 | Msa0830760:five_prime_UTR |
| CGTGAAATACGCGAAAGAGC+TGG | 0.454935 | 5_4:-3796151 | Msa0830760:CDS |
| AGAGTTGTGGCATTACTGAT+TGG | 0.485017 | 5_4:+3796057 | None:intergenic |
| AAGACTCCACAATATAAAAT+GGG | 0.490249 | 5_4:+3797234 | None:intergenic |
| AGGTAAGTTCACAGACTTTG+AGG | 0.504528 | 5_4:-3796492 | Msa0830760:CDS |
| ATTTCTCTTGAAAACACTCC+AGG | 0.515163 | 5_4:-3796461 | Msa0830760:intron |
| GGTAAGTTCACAGACTTTGA+GGG | 0.515533 | 5_4:-3796491 | Msa0830760:CDS |
| GACTGCATTGTCTGGACAGG+TGG | 0.519769 | 5_4:+3796085 | None:intergenic |
| TCTGAATCTGATTGACCCAA+TGG | 0.522303 | 5_4:+3798442 | None:intergenic |
| TCTGACTGCATTGTCTGGAC+AGG | 0.526290 | 5_4:+3796082 | None:intergenic |
| ATTCTGCATTCTTCCCAAAG+AGG | 0.532916 | 5_4:+3797293 | None:intergenic |
| AAAAGGATGGATAAATAGAA+AGG | 0.534435 | 5_4:+3798733 | None:intergenic |
| GCCTGCTGCTTATTAACCGA+TGG | 0.548925 | 5_4:-3797202 | Msa0830760:CDS |
| TCTCCTCTACACCATGGTGG+TGG | 0.555785 | 5_4:-3798406 | Msa0830760:CDS |
| CACAAGCATAACACGAAACA+AGG | 0.556012 | 5_4:+3797155 | None:intergenic |
| GTAGCAATGGATCAAATCAA+TGG | 0.556803 | 5_4:-3798381 | Msa0830760:CDS |
| CATGGTGGTGGTAGTAGCAA+TGG | 0.568325 | 5_4:-3798394 | Msa0830760:CDS |
| TGAAGCTACAGATATGAAGC+TGG | 0.570972 | 5_4:-3796122 | Msa0830760:CDS |
| GCCATCGGTTAATAAGCAGC+AGG | 0.572611 | 5_4:+3797201 | None:intergenic |
| TGACCCAATGGGATGTAAGC+AGG | 0.573937 | 5_4:+3798454 | None:intergenic |
| TTCTTCCCAAAGAGGTAGCA+AGG | 0.573956 | 5_4:+3797301 | None:intergenic |
| TGGGTTCTGGCACGTTCATG+GGG | 0.574682 | 5_4:-3797267 | Msa0830760:CDS |
| TAACACGAAACAAGGCATCC+AGG | 0.577372 | 5_4:+3797163 | None:intergenic |
| CTTGTTTCGTGTTATGCTTG+TGG | 0.581137 | 5_4:-3797154 | Msa0830760:CDS |
| CTGAATCTGATTGACCCAAT+GGG | 0.585943 | 5_4:+3798443 | None:intergenic |
| CTACCACCACCATGGTGTAG+AGG | 0.589434 | 5_4:+3798403 | None:intergenic |
| TCCATTATTATGAAGAACCA+AGG | 0.591583 | 5_4:-3798490 | Msa0830760:exon |
| ACTTTGATCTTAAGGTATTG+CGG | 0.618835 | 5_4:+3797128 | None:intergenic |
| TGAAATACGCGAAAGAGCTG+GGG | 0.629440 | 5_4:-3796149 | Msa0830760:CDS |
| CCCAATGGGATGTAAGCAGG+TGG | 0.640544 | 5_4:+3798457 | None:intergenic |
| CAGGTGGAACATAACCACCT+TGG | 0.653627 | 5_4:+3798473 | None:intergenic |
| CATTGCTACTACCACCACCA+TGG | 0.662654 | 5_4:+3798395 | None:intergenic |
| GTCTCTCCTCTACACCATGG+TGG | 0.675080 | 5_4:-3798409 | Msa0830760:CDS |
| ATTATTATGAAGAACCAAGG+TGG | 0.688442 | 5_4:-3798487 | Msa0830760:exon |
| AGTGTCTCTCCTCTACACCA+TGG | 0.703188 | 5_4:-3798412 | Msa0830760:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTAAATTGTTTATAATGT+TGG | + | chr5_4:3796194-3796213 | None:intergenic | 10.0% |
| !! | AATCTAAAAAGAATAAAAAA+TGG | + | chr5_4:3796238-3796257 | None:intergenic | 10.0% |
| !!! | TTTTATTCTTTTTAGATTTA+TGG | - | chr5_4:3796240-3796259 | Msa0830760:intron | 10.0% |
| !!! | TTTATTCTTTTTAGATTTAT+GGG | - | chr5_4:3796241-3796260 | Msa0830760:intron | 10.0% |
| !! | TTATTTGATGTATATATAAA+GGG | - | chr5_4:3797190-3797209 | Msa0830760:CDS | 10.0% |
| !! | GTTATTTGATGTATATATAA+AGG | - | chr5_4:3797189-3797208 | Msa0830760:CDS | 15.0% |
| !! | AAAAATCATTTGACTAATTA+CGG | + | chr5_4:3797352-3797371 | None:intergenic | 15.0% |
| !! | AGTAAATTTGAAGAATAATT+AGG | - | chr5_4:3797954-3797973 | Msa0830760:intron | 15.0% |
| !! | TTAATAATGAAAAGAAAATC+TGG | - | chr5_4:3798558-3798577 | Msa0830760:five_prime_UTR | 15.0% |
| !! | TTATCGAAACATTATGAAAA+AGG | + | chr5_4:3796130-3796149 | None:intergenic | 20.0% |
| !!! | AAATTCCATTTTCTGATTTA+CGG | - | chr5_4:3796148-3796167 | Msa0830760:CDS | 20.0% |
| !!! | TAAACAATTTAATTTCTCCT+TGG | - | chr5_4:3796200-3796219 | Msa0830760:intron | 20.0% |
| !! | TTTGTATGTTTGTTTGTTTA+AGG | - | chr5_4:3796578-3796597 | Msa0830760:intron | 20.0% |
| !!! | AAGTTCTGAATTTTATTGTT+TGG | - | chr5_4:3797025-3797044 | Msa0830760:intron | 20.0% |
| !!! | AAAGATTGGTTTCAAATTTT+CGG | - | chr5_4:3797488-3797507 | Msa0830760:intron | 20.0% |
| !! | CAAATTATACTTTGATCTTA+AGG | + | chr5_4:3797726-3797745 | None:intergenic | 20.0% |
| !! | ATAAAATTTGATGTAAAGCA+TGG | + | chr5_4:3797767-3797786 | None:intergenic | 20.0% |
| !! | TAATAGTAAAAGAACTGTTT+AGG | - | chr5_4:3797984-3798003 | Msa0830760:intron | 20.0% |
| !! | ATGTGATAAAAATGAAAGAA+AGG | - | chr5_4:3798132-3798151 | Msa0830760:intron | 20.0% |
| !! | AGAAATTGAAATAAACTTGT+AGG | - | chr5_4:3798277-3798296 | Msa0830760:intron | 20.0% |
| !!! | AGATGCATTTTTTGAAAAAA+AGG | - | chr5_4:3798456-3798475 | Msa0830760:CDS | 20.0% |
| !! | TGCTAAAATTTCTCTATTAA+AGG | + | chr5_4:3798487-3798506 | None:intergenic | 20.0% |
| !! | ACATCCAAAAAATTTAGATT+GGG | + | chr5_4:3798524-3798543 | None:intergenic | 20.0% |
| !!! | ATATTCTTTTTGTCTTATGA+AGG | - | chr5_4:3798604-3798623 | Msa0830760:five_prime_UTR | 20.0% |
| !! | ACAATTTCGTTGATTGAAAT+TGG | + | chr5_4:3796088-3796107 | None:intergenic | 25.0% |
| ! | AAAAGGATGGATAAATAGAA+AGG | + | chr5_4:3796113-3796132 | None:intergenic | 25.0% |
| !! | AATTCCATTTTCTGATTTAC+GGG | - | chr5_4:3796149-3796168 | Msa0830760:CDS | 25.0% |
| ! | ATACAAACATAATCAACAAG+AGG | + | chr5_4:3796565-3796584 | None:intergenic | 25.0% |
| ! | CTAAGAAAAATCTTCTACTA+AGG | + | chr5_4:3796744-3796763 | None:intergenic | 25.0% |
| ! | AGATAGATAGATAGATAGAT+TGG | - | chr5_4:3796785-3796804 | Msa0830760:intron | 25.0% |
| ! | CATCCTAAAAATAGTATTCT+CGG | + | chr5_4:3796906-3796925 | None:intergenic | 25.0% |
| ! | TGTTTAACAAACACAAGAAA+AGG | + | chr5_4:3797074-3797093 | None:intergenic | 25.0% |
| ! | TAACTCACTGAACTTATTTA+TGG | - | chr5_4:3797115-3797134 | Msa0830760:intron | 25.0% |
| !! | ACTTTTTGTAACATACAGAA+AGG | + | chr5_4:3797434-3797453 | None:intergenic | 25.0% |
| ! | AAGACTCCACAATATAAAAT+GGG | + | chr5_4:3797612-3797631 | None:intergenic | 25.0% |
| !! | AAGATCAAAGTATAATTTGC+CGG | - | chr5_4:3797727-3797746 | Msa0830760:intron | 25.0% |
| ! | CATGGTTGTAATATTATTAC+CGG | + | chr5_4:3797749-3797768 | None:intergenic | 25.0% |
| ! | GAACAGAAAATAGAAAGAAA+AGG | + | chr5_4:3797804-3797823 | None:intergenic | 25.0% |
| !! | TTTCTTTCTATTTTCTGTTC+TGG | - | chr5_4:3797804-3797823 | Msa0830760:intron | 25.0% |
| ! | AATTGGGGTAAAATAGTAAA+TGG | - | chr5_4:3797907-3797926 | Msa0830760:intron | 25.0% |
| ! | AATAGTAAATGGTTCTTAAC+TGG | - | chr5_4:3797918-3797937 | Msa0830760:intron | 25.0% |
| ! | TATTCTTCAAATTTACTGAC+TGG | + | chr5_4:3797951-3797970 | None:intergenic | 25.0% |
| ! | ATACTCTCTTATGTAGAAAT+TGG | + | chr5_4:3798182-3798201 | None:intergenic | 25.0% |
| !!! | CAATTTCTAGTTTTCTTCTA+GGG | + | chr5_4:3798265-3798284 | None:intergenic | 25.0% |
| !!! | TCAATTTCTAGTTTTCTTCT+AGG | + | chr5_4:3798266-3798285 | None:intergenic | 25.0% |
| !!! | ATCACCCAATCTAAATTTTT+TGG | - | chr5_4:3798517-3798536 | Msa0830760:five_prime_UTR | 25.0% |
| ! | GACATCCAAAAAATTTAGAT+TGG | + | chr5_4:3798525-3798544 | None:intergenic | 25.0% |
| CGAAACATTATGAAAAAGGA+TGG | + | chr5_4:3796126-3796145 | None:intergenic | 30.0% | |
| TTCACAATCTTGCTTTGTAT+AGG | - | chr5_4:3796280-3796299 | Msa0830760:intron | 30.0% | |
| TCCATTATTATGAAGAACCA+AGG | - | chr5_4:3796353-3796372 | Msa0830760:intron | 30.0% | |
| ! | ACCTTGGTTCTTCATAATAA+TGG | + | chr5_4:3796357-3796376 | None:intergenic | 30.0% |
| ATTATTATGAAGAACCAAGG+TGG | - | chr5_4:3796356-3796375 | Msa0830760:intron | 30.0% | |
| !!! | CGAGAATACTATTTTTAGGA+TGG | - | chr5_4:3796904-3796923 | Msa0830760:intron | 30.0% |
| TCACTGAACTTATTTATGGT+TGG | - | chr5_4:3797119-3797138 | Msa0830760:CDS | 30.0% | |
| ATAACCACTGATGTGAAATA+GGG | + | chr5_4:3797174-3797193 | None:intergenic | 30.0% | |
| AATAACCACTGATGTGAAAT+AGG | + | chr5_4:3797175-3797194 | None:intergenic | 30.0% | |
| TGATGTATATATAAAGGGCA+TGG | - | chr5_4:3797195-3797214 | Msa0830760:CDS | 30.0% | |
| CACAATGCATAATATATGCA+AGG | - | chr5_4:3797250-3797269 | Msa0830760:CDS | 30.0% | |
| !!! | TCCATGCCCTTTTTTTTTTT+GGG | + | chr5_4:3797301-3797320 | None:intergenic | 30.0% |
| !!! | TCTGCTTTTTTTCGATAAAC+TGG | - | chr5_4:3797458-3797477 | Msa0830760:intron | 30.0% |
| AAACTGGCAAATGAAAAGAT+TGG | - | chr5_4:3797474-3797493 | Msa0830760:intron | 30.0% | |
| ! | GTGTTACCCATTTTATATTG+TGG | - | chr5_4:3797603-3797622 | Msa0830760:intron | 30.0% |
| CAAGACTCCACAATATAAAA+TGG | + | chr5_4:3797613-3797632 | None:intergenic | 30.0% | |
| !! | ACTTTGATCTTAAGGTATTG+CGG | + | chr5_4:3797718-3797737 | None:intergenic | 30.0% |
| ! | TGAGACTGGTTAATGTAATT+GGG | - | chr5_4:3797891-3797910 | Msa0830760:intron | 30.0% |
| AACTGTTTAGGTATGTTAGT+AGG | - | chr5_4:3797996-3798015 | Msa0830760:intron | 30.0% | |
| ACTGTTTAGGTATGTTAGTA+GGG | - | chr5_4:3797997-3798016 | Msa0830760:intron | 30.0% | |
| ! | CAGAATTTCTGAATCCTTTT+AGG | - | chr5_4:3798321-3798340 | Msa0830760:intron | 30.0% |
| CTAGGAAAATATTTAGGCAT+AGG | + | chr5_4:3798432-3798451 | None:intergenic | 30.0% | |
| CTGCAACTAGGAAAATATTT+AGG | + | chr5_4:3798438-3798457 | None:intergenic | 30.0% | |
| ACACAGATGACAACAAAAAT+GGG | + | chr5_4:3798654-3798673 | None:intergenic | 30.0% | |
| GAAACCCGTAAATCAGAAAA+TGG | + | chr5_4:3796156-3796175 | None:intergenic | 35.0% | |
| !! | AATGGATTTTTGTGAGACCA+AGG | + | chr5_4:3796220-3796239 | None:intergenic | 35.0% |
| GTAGCAATGGATCAAATCAA+TGG | - | chr5_4:3796462-3796481 | Msa0830760:CDS | 35.0% | |
| ! | CTTGGTGATTAAACAAGGTA+AGG | + | chr5_4:3796539-3796558 | None:intergenic | 35.0% |
| ! | CTTACCTTGTTTAATCACCA+AGG | - | chr5_4:3796537-3796556 | Msa0830760:intron | 35.0% |
| ACGAATGTAGGAGAAAAATG+AGG | - | chr5_4:3796699-3796718 | Msa0830760:intron | 35.0% | |
| CGAATGTAGGAGAAAAATGA+GGG | - | chr5_4:3796700-3796719 | Msa0830760:intron | 35.0% | |
| GAATGTAGGAGAAAAATGAG+GGG | - | chr5_4:3796701-3796720 | Msa0830760:intron | 35.0% | |
| !! | AGATTGGTTGATAAGCTCAT+TGG | - | chr5_4:3796805-3796824 | Msa0830760:intron | 35.0% |
| CAGTACATGTTCCTTATTGT+GGG | + | chr5_4:3796875-3796894 | None:intergenic | 35.0% | |
| ACAGTACATGTTCCTTATTG+TGG | + | chr5_4:3796876-3796895 | None:intergenic | 35.0% | |
| CCTAAAAATAGTATTCTCGG+CGG | + | chr5_4:3796903-3796922 | None:intergenic | 35.0% | |
| !!! | ATTTTTAGGATGGATGACAC+TGG | - | chr5_4:3796914-3796933 | Msa0830760:intron | 35.0% |
| AAAAGATCTCACTGATCAGT+GGG | + | chr5_4:3796955-3796974 | None:intergenic | 35.0% | |
| TAAAAGATCTCACTGATCAG+TGG | + | chr5_4:3796956-3796975 | None:intergenic | 35.0% | |
| ! | CAGTGAGATCTTTTATGAGT+AGG | - | chr5_4:3796961-3796980 | Msa0830760:intron | 35.0% |
| !! | TTTTGACTGCCTTGACAATA+AGG | - | chr5_4:3796991-3797010 | Msa0830760:intron | 35.0% |
| CTTGACAATAAGGATTAGGA+GGG | - | chr5_4:3797001-3797020 | Msa0830760:intron | 35.0% | |
| TTGACAATAAGGATTAGGAG+GGG | - | chr5_4:3797002-3797021 | Msa0830760:intron | 35.0% | |
| TAACCACTGATGTGAAATAG+GGG | + | chr5_4:3797173-3797192 | None:intergenic | 35.0% | |
| CATAATATATGCAAGGTCCA+GGG | - | chr5_4:3797257-3797276 | Msa0830760:CDS | 35.0% | |
| CCACCACCCAAAAAAAAAAA+GGG | - | chr5_4:3797292-3797311 | Msa0830760:CDS | 35.0% | |
| !!! | ATGCCCTTTTTTTTTTTGGG+TGG | + | chr5_4:3797298-3797317 | None:intergenic | 35.0% |
| ACCCAAAAAAAAAAAGGGCA+TGG | - | chr5_4:3797297-3797316 | Msa0830760:CDS | 35.0% | |
| !!! | CTCCATGCCCTTTTTTTTTT+TGG | + | chr5_4:3797302-3797321 | None:intergenic | 35.0% |
| ! | GTGAGACTGGTTAATGTAAT+TGG | - | chr5_4:3797890-3797909 | Msa0830760:intron | 35.0% |
| ! | GAGACTGGTTAATGTAATTG+GGG | - | chr5_4:3797892-3797911 | Msa0830760:intron | 35.0% |
| AGTAAATGGTTCTTAACTGG+AGG | - | chr5_4:3797921-3797940 | Msa0830760:intron | 35.0% | |
| TCTATAGGAAGTGAAAAGCT+GGG | + | chr5_4:3798038-3798057 | None:intergenic | 35.0% | |
| CTGATAGAGTTAGATAATGC+AGG | - | chr5_4:3798211-3798230 | Msa0830760:intron | 35.0% | |
| ! | AGTTAGATAATGCAGGTTGA+AGG | - | chr5_4:3798218-3798237 | Msa0830760:intron | 35.0% |
| ! | GTTAGATAATGCAGGTTGAA+GGG | - | chr5_4:3798219-3798238 | Msa0830760:intron | 35.0% |
| !! | AGTTTTCTTCTAGGGAAAAC+TGG | + | chr5_4:3798257-3798276 | None:intergenic | 35.0% |
| !! | GAATCCTTTTAGGTAGTTCA+AGG | - | chr5_4:3798331-3798350 | Msa0830760:intron | 35.0% |
| CTTACCTTGAACTACCTAAA+AGG | + | chr5_4:3798338-3798357 | None:intergenic | 35.0% | |
| ATTTCTCTTGAAAACACTCC+AGG | - | chr5_4:3798382-3798401 | Msa0830760:CDS | 35.0% | |
| CAAAAAATGCATCTGCAACT+AGG | + | chr5_4:3798450-3798469 | None:intergenic | 35.0% | |
| CACACAGATGACAACAAAAA+TGG | + | chr5_4:3798655-3798674 | None:intergenic | 35.0% | |
| CTGAATCTGATTGACCCAAT+GGG | + | chr5_4:3796403-3796422 | None:intergenic | 40.0% | |
| TCTGAATCTGATTGACCCAA+TGG | + | chr5_4:3796404-3796423 | None:intergenic | 40.0% | |
| GGATCAAATCAATGGTCTTC+TGG | - | chr5_4:3796470-3796489 | Msa0830760:CDS | 40.0% | |
| !! | ATAATCAACAAGAGGCACCT+TGG | + | chr5_4:3796557-3796576 | None:intergenic | 40.0% |
| AGAAAAATGAGGGGAACTAG+AGG | - | chr5_4:3796710-3796729 | Msa0830760:intron | 40.0% | |
| !! | TGGTTGATAAGCTCATTGGT+TGG | - | chr5_4:3796809-3796828 | Msa0830760:intron | 40.0% |
| ! | TGATAAGCTCATTGGTTGGT+TGG | - | chr5_4:3796813-3796832 | Msa0830760:intron | 40.0% |
| GTTGGAACCTTATGTTGGAT+GGG | - | chr5_4:3796831-3796850 | Msa0830760:intron | 40.0% | |
| TGTTCCTTATTGTGGGTCTA+TGG | + | chr5_4:3796868-3796887 | None:intergenic | 40.0% | |
| !! | CCGCCGAGAATACTATTTTT+AGG | - | chr5_4:3796900-3796919 | Msa0830760:intron | 40.0% |
| CTGCCTTGACAATAAGGATT+AGG | - | chr5_4:3796997-3797016 | Msa0830760:intron | 40.0% | |
| CCTCCTAATCCTTATTGTCA+AGG | + | chr5_4:3797003-3797022 | None:intergenic | 40.0% | |
| CCTTGACAATAAGGATTAGG+AGG | - | chr5_4:3797000-3797019 | Msa0830760:intron | 40.0% | |
| AACCACTGATGTGAAATAGG+GGG | + | chr5_4:3797172-3797191 | None:intergenic | 40.0% | |
| GCATAATATATGCAAGGTCC+AGG | - | chr5_4:3797256-3797275 | Msa0830760:CDS | 40.0% | |
| GCCACCACCCAAAAAAAAAA+AGG | - | chr5_4:3797291-3797310 | Msa0830760:CDS | 40.0% | |
| !!! | CCCTTTTTTTTTTTGGGTGG+TGG | + | chr5_4:3797295-3797314 | None:intergenic | 40.0% |
| TTTGTCCTTGCTACCTCTTT+GGG | - | chr5_4:3797537-3797556 | Msa0830760:intron | 40.0% | |
| ATTCTGCATTCTTCCCAAAG+AGG | + | chr5_4:3797553-3797572 | None:intergenic | 40.0% | |
| TGGGAAGAATGCAGAATTTC+TGG | - | chr5_4:3797556-3797575 | Msa0830760:intron | 40.0% | |
| GGGAAGAATGCAGAATTTCT+GGG | - | chr5_4:3797557-3797576 | Msa0830760:intron | 40.0% | |
| ! | AATGCAGAATTTCTGGGTTC+TGG | - | chr5_4:3797563-3797582 | Msa0830760:intron | 40.0% |
| ! | ATTAACCGATGGCCTGTTTT+TGG | - | chr5_4:3797652-3797671 | Msa0830760:intron | 40.0% |
| !! | TTAACCGATGGCCTGTTTTT+GGG | - | chr5_4:3797653-3797672 | Msa0830760:intron | 40.0% |
| TAAACCCAAAAACAGGCCAT+CGG | + | chr5_4:3797660-3797679 | None:intergenic | 40.0% | |
| ATCCAGGTAAACCCAAAAAC+AGG | + | chr5_4:3797667-3797686 | None:intergenic | 40.0% | |
| CACAAGCATAACACGAAACA+AGG | + | chr5_4:3797691-3797710 | None:intergenic | 40.0% | |
| CTTGTTTCGTGTTATGCTTG+TGG | - | chr5_4:3797689-3797708 | Msa0830760:intron | 40.0% | |
| !! | TGTTGCATTTTGAGTGAGAC+TGG | - | chr5_4:3797877-3797896 | Msa0830760:intron | 40.0% |
| CTATAGGAAGTGAAAAGCTG+GGG | + | chr5_4:3798037-3798056 | None:intergenic | 40.0% | |
| GTCTATAGGAAGTGAAAAGC+TGG | + | chr5_4:3798039-3798058 | None:intergenic | 40.0% | |
| AGGTAAGTTCACAGACTTTG+AGG | - | chr5_4:3798351-3798370 | Msa0830760:CDS | 40.0% | |
| GGTAAGTTCACAGACTTTGA+GGG | - | chr5_4:3798352-3798371 | Msa0830760:CDS | 40.0% | |
| TTCACGGTACTCTTGACAAA+TGG | + | chr5_4:3798678-3798697 | None:intergenic | 40.0% | |
| TGAAGCTACAGATATGAAGC+TGG | - | chr5_4:3798721-3798740 | Msa0830760:five_prime_UTR | 40.0% | |
| ! | GGCACCTTGGTGATTAAACA+AGG | + | chr5_4:3796544-3796563 | None:intergenic | 45.0% |
| GTGCTAGATGACACGAATGT+AGG | - | chr5_4:3796687-3796706 | Msa0830760:intron | 45.0% | |
| ! | GGTTGGTTGGAACCTTATGT+TGG | - | chr5_4:3796826-3796845 | Msa0830760:intron | 45.0% |
| GGTTGGAACCTTATGTTGGA+TGG | - | chr5_4:3796830-3796849 | Msa0830760:intron | 45.0% | |
| CTTATGTTGGATGGGAAGAC+CGG | - | chr5_4:3796839-3796858 | Msa0830760:intron | 45.0% | |
| TATTGTGGGTCTATGGTAGC+CGG | + | chr5_4:3796861-3796880 | None:intergenic | 45.0% | |
| GCTACCATAGACCCACAATA+AGG | - | chr5_4:3796861-3796880 | Msa0830760:intron | 45.0% | |
| ATCTCACTGATCAGTGGGAT+AGG | + | chr5_4:3796950-3796969 | None:intergenic | 45.0% | |
| TTCCCCCTATTTCACATCAG+TGG | - | chr5_4:3797167-3797186 | Msa0830760:CDS | 45.0% | |
| !!! | TTTTTTTTGGGTGGTGGCCA+GGG | + | chr5_4:3797289-3797308 | None:intergenic | 45.0% |
| !!! | TTTTTTTTTGGGTGGTGGCC+AGG | + | chr5_4:3797290-3797309 | None:intergenic | 45.0% |
| ! | CAAATTTTCGGCTTCTGTGC+AGG | - | chr5_4:3797500-3797519 | Msa0830760:intron | 45.0% |
| CTTTGTCCTTGCTACCTCTT+TGG | - | chr5_4:3797536-3797555 | Msa0830760:intron | 45.0% | |
| TTCTTCCCAAAGAGGTAGCA+AGG | + | chr5_4:3797545-3797564 | None:intergenic | 45.0% | |
| ! | TAACACGAAACAAGGCATCC+AGG | + | chr5_4:3797683-3797702 | None:intergenic | 45.0% |
| !! | TGCTGCTACTTGCTGTCTAT+AGG | + | chr5_4:3798053-3798072 | None:intergenic | 45.0% |
| ! | TGAAAACACTCCAGGTACTG+TGG | - | chr5_4:3798390-3798409 | Msa0830760:CDS | 45.0% |
| !! | TTATGAAGGAAGCACCGTGT+GGG | - | chr5_4:3798618-3798637 | Msa0830760:five_prime_UTR | 45.0% |
| TGGGTTACAAAATCCCCACA+CGG | + | chr5_4:3798635-3798654 | None:intergenic | 45.0% | |
| CAGCTCTTTCGCGTATTTCA+CGG | + | chr5_4:3798694-3798713 | None:intergenic | 45.0% | |
| GTGAAATACGCGAAAGAGCT+GGG | - | chr5_4:3798693-3798712 | Msa0830760:five_prime_UTR | 45.0% | |
| TGAAATACGCGAAAGAGCTG+GGG | - | chr5_4:3798694-3798713 | Msa0830760:five_prime_UTR | 45.0% | |
| TGGAATCTGACTGCATTGTC+TGG | + | chr5_4:3798769-3798788 | None:intergenic | 45.0% | |
| !!! | TAAGTAATTAATTAATTTTT+TGG | - | chr5_4:3796310-3796329 | Msa0830760:intron | 5.0% |
| CAGGTGGAACATAACCACCT+TGG | + | chr5_4:3796373-3796392 | None:intergenic | 50.0% | |
| TCCACCTGCTTACATCCCAT+TGG | - | chr5_4:3796385-3796404 | Msa0830760:intron | 50.0% | |
| CCACCTGCTTACATCCCATT+GGG | - | chr5_4:3796386-3796405 | Msa0830760:intron | 50.0% | |
| TGACCCAATGGGATGTAAGC+AGG | + | chr5_4:3796392-3796411 | None:intergenic | 50.0% | |
| AGTGTCTCTCCTCTACACCA+TGG | - | chr5_4:3796431-3796450 | Msa0830760:intron | 50.0% | |
| CATTGCTACTACCACCACCA+TGG | + | chr5_4:3796451-3796470 | None:intergenic | 50.0% | |
| !! | CATGGTGGTGGTAGTAGCAA+TGG | - | chr5_4:3796449-3796468 | Msa0830760:intron | 50.0% |
| CGGTCTTCCCATCCAACATA+AGG | + | chr5_4:3796841-3796860 | None:intergenic | 50.0% | |
| GGCTTCTGTGCAGGTTGTAT+AGG | - | chr5_4:3797509-3797528 | Msa0830760:intron | 50.0% | |
| ! | GCCTGCTGCTTATTAACCGA+TGG | - | chr5_4:3797641-3797660 | Msa0830760:intron | 50.0% |
| ! | GCCATCGGTTAATAAGCAGC+AGG | + | chr5_4:3797645-3797664 | None:intergenic | 50.0% |
| !!! | GGCCTGTTTTTGGGTTTACC+TGG | - | chr5_4:3797662-3797681 | Msa0830760:intron | 50.0% |
| GTAGCAGCAACTTTGAGTCC+TGG | - | chr5_4:3798064-3798083 | Msa0830760:intron | 50.0% | |
| CTCATCTCAGATGATGTGCC+AGG | + | chr5_4:3798085-3798104 | None:intergenic | 50.0% | |
| !! | GAGAAGTGTTCCACAGTACC+TGG | + | chr5_4:3798403-3798422 | None:intergenic | 50.0% |
| !! | CTTATGAAGGAAGCACCGTG+TGG | - | chr5_4:3798617-3798636 | Msa0830760:five_prime_UTR | 50.0% |
| !! | TATGAAGGAAGCACCGTGTG+GGG | - | chr5_4:3798619-3798638 | Msa0830760:five_prime_UTR | 50.0% |
| CGTGAAATACGCGAAAGAGC+TGG | - | chr5_4:3798692-3798711 | Msa0830760:five_prime_UTR | 50.0% | |
| TCTGACTGCATTGTCTGGAC+AGG | + | chr5_4:3798764-3798783 | None:intergenic | 50.0% | |
| CCCAATGGGATGTAAGCAGG+TGG | + | chr5_4:3796389-3796408 | None:intergenic | 55.0% | |
| GTCTCTCCTCTACACCATGG+TGG | - | chr5_4:3796434-3796453 | Msa0830760:intron | 55.0% | |
| TCTCCTCTACACCATGGTGG+TGG | - | chr5_4:3796437-3796456 | Msa0830760:intron | 55.0% | |
| CTACCACCACCATGGTGTAG+AGG | + | chr5_4:3796443-3796462 | None:intergenic | 55.0% | |
| CCAACTGAGCTAAGCTCACG+AGG | + | chr5_4:3797226-3797245 | None:intergenic | 55.0% | |
| CCTCGTGAGCTTAGCTCAGT+TGG | - | chr5_4:3797223-3797242 | Msa0830760:CDS | 55.0% | |
| AAGGTCCAGGGTTCAAACCC+TGG | - | chr5_4:3797269-3797288 | Msa0830760:CDS | 55.0% | |
| ! | TCTGGGTTCTGGCACGTTCA+TGG | - | chr5_4:3797574-3797593 | Msa0830760:intron | 55.0% |
| ! | CTGGGTTCTGGCACGTTCAT+GGG | - | chr5_4:3797575-3797594 | Msa0830760:intron | 55.0% |
| ! | TGGGTTCTGGCACGTTCATG+GGG | - | chr5_4:3797576-3797595 | Msa0830760:intron | 55.0% |
| GACTGCATTGTCTGGACAGG+TGG | + | chr5_4:3798761-3798780 | None:intergenic | 55.0% | |
| GGTGGCCAGGGTTTGAACCC+TGG | + | chr5_4:3797277-3797296 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 3796069 | 3798796 | 3796069 | ID=Msa0830760;Name=Msa0830760 |
| chr5_4 | mRNA | 3796069 | 3798796 | 3796069 | ID=Msa0830760-mRNA-1;Parent=Msa0830760;Name=Msa0830760-mRNA-1;_AED=0.32;_eAED=0.32;_QI=293|0.33|0.5|1|1|1|4|0|186 |
| chr5_4 | exon | 3796069 | 3796178 | 3796069 | ID=Msa0830760-mRNA-1:exon:1534;Parent=Msa0830760-mRNA-1 |
| chr5_4 | exon | 3796462 | 3796522 | 3796462 | ID=Msa0830760-mRNA-1:exon:1533;Parent=Msa0830760-mRNA-1 |
| chr5_4 | exon | 3797117 | 3797343 | 3797117 | ID=Msa0830760-mRNA-1:exon:1532;Parent=Msa0830760-mRNA-1 |
| chr5_4 | exon | 3798341 | 3798796 | 3798341 | ID=Msa0830760-mRNA-1:exon:1531;Parent=Msa0830760-mRNA-1 |
| chr5_4 | five_prime_UTR | 3798504 | 3798796 | 3798504 | ID=Msa0830760-mRNA-1:five_prime_utr;Parent=Msa0830760-mRNA-1 |
| chr5_4 | CDS | 3798341 | 3798503 | 3798341 | ID=Msa0830760-mRNA-1:cds;Parent=Msa0830760-mRNA-1 |
| chr5_4 | CDS | 3797117 | 3797343 | 3797117 | ID=Msa0830760-mRNA-1:cds;Parent=Msa0830760-mRNA-1 |
| chr5_4 | CDS | 3796462 | 3796522 | 3796462 | ID=Msa0830760-mRNA-1:cds;Parent=Msa0830760-mRNA-1 |
| chr5_4 | CDS | 3796069 | 3796178 | 3796069 | ID=Msa0830760-mRNA-1:cds;Parent=Msa0830760-mRNA-1 |
| Gene Sequence |
| Protein sequence |
