Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0794420 | KEH27386.1 | 86.096 | 187 | 24 | 2 | 1 | 186 | 67 | 252 | 3.47e-109 | 322 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0794420 | sp|Q8S8T8|PCR10_ARATH | 55.080 | 187 | 77 | 4 | 2 | 182 | 3 | 188 | 7.41e-66 | 203 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0794420 | A0A072UD93 | 86.096 | 187 | 24 | 2 | 1 | 186 | 67 | 252 | 1.66e-109 | 322 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006700 | Msa0794420 | 0.819989 | 8.690641e-53 | -8.615850e-47 |
| Msa0020630 | Msa0794420 | 0.813718 | 2.220805e-51 | -8.615850e-47 |
| Msa0055280 | Msa0794420 | 0.807170 | 5.762186e-50 | -8.615850e-47 |
| Msa0101060 | Msa0794420 | 0.820200 | 7.777991e-53 | -8.615850e-47 |
| Msa0111310 | Msa0794420 | 0.806309 | 8.757603e-50 | -8.615850e-47 |
| Msa0114250 | Msa0794420 | 0.818679 | 1.728385e-52 | -8.615850e-47 |
| Msa0620640 | Msa0794420 | 0.816062 | 6.711819e-52 | -8.615850e-47 |
| Msa0621890 | Msa0794420 | 0.812318 | 4.502602e-51 | -8.615850e-47 |
| Msa0624730 | Msa0794420 | 0.831700 | 1.438699e-55 | -8.615850e-47 |
| Msa0626230 | Msa0794420 | 0.804872 | 1.753234e-49 | -8.615850e-47 |
| Msa0638280 | Msa0794420 | 0.801998 | 6.909772e-49 | -8.615850e-47 |
| Msa0638320 | Msa0794420 | 0.804396 | 2.204482e-49 | -8.615850e-47 |
| Msa0647000 | Msa0794420 | 0.804557 | 2.040329e-49 | -8.615850e-47 |
| Msa0651400 | Msa0794420 | 0.807110 | 5.932773e-50 | -8.615850e-47 |
| Msa0656270 | Msa0794420 | 0.804172 | 2.454456e-49 | -8.615850e-47 |
| Msa0674220 | Msa0794420 | 0.824624 | 7.295866e-54 | -8.615850e-47 |
| Msa0688550 | Msa0794420 | 0.802631 | 5.120149e-49 | -8.615850e-47 |
| Msa0697140 | Msa0794420 | 0.804821 | 1.797011e-49 | -8.615850e-47 |
| Msa0714600 | Msa0794420 | 0.809658 | 1.697390e-50 | -8.615850e-47 |
| Msa0715310 | Msa0794420 | 0.801074 | 1.069104e-48 | -8.615850e-47 |
| Msa0715720 | Msa0794420 | 0.830090 | 3.571535e-55 | -8.615850e-47 |
| Msa0718240 | Msa0794420 | 0.803902 | 2.792192e-49 | -8.615850e-47 |
| Msa0722930 | Msa0794420 | 0.837886 | 3.987902e-57 | -8.615850e-47 |
| Msa0723140 | Msa0794420 | 0.848417 | 6.212453e-60 | -8.615850e-47 |
| Msa0789270 | Msa0794420 | 0.815464 | 9.123937e-52 | -8.615850e-47 |
| Msa0789280 | Msa0794420 | 0.812472 | 4.166827e-51 | -8.615850e-47 |
| Msa0789290 | Msa0794420 | 0.811573 | 6.543354e-51 | -8.615850e-47 |
| Msa0789300 | Msa0794420 | 0.814173 | 1.763289e-51 | -8.615850e-47 |
| Msa0792510 | Msa0794420 | 0.812363 | 4.403287e-51 | -8.615850e-47 |
| Msa0794420 | Msa0828570 | 0.818893 | 1.545699e-52 | -8.615850e-47 |
| Msa0794420 | Msa0830760 | 0.833040 | 6.698776e-56 | -8.615850e-47 |
| Msa0794420 | Msa0837990 | 0.823564 | 1.294535e-53 | -8.615850e-47 |
| Msa0794420 | Msa0839330 | 0.814029 | 1.896931e-51 | -8.615850e-47 |
| Msa0794420 | Msa0843280 | 0.804268 | 2.344215e-49 | -8.615850e-47 |
| Msa0794420 | Msa0847200 | 0.838137 | 3.438208e-57 | -8.615850e-47 |
| Msa0794420 | Msa0910980 | -0.820102 | 8.191089e-53 | -8.615850e-47 |
| Msa0794420 | Msa0951720 | 0.821974 | 3.035171e-53 | -8.615850e-47 |
| Msa0794420 | Msa0961420 | -0.801153 | 1.029776e-48 | -8.615850e-47 |
| Msa0794420 | Msa0965520 | 0.800769 | 1.233755e-48 | -8.615850e-47 |
| Msa0794420 | Msa0973230 | 0.803255 | 3.803546e-49 | -8.615850e-47 |
| Msa0794420 | Msa0992490 | -0.810328 | 1.217234e-50 | -8.615850e-47 |
| Msa0794420 | Msa1036390 | 0.826785 | 2.241604e-54 | -8.615850e-47 |
| Msa0794420 | Msa1071280 | 0.804217 | 2.401521e-49 | -8.615850e-47 |
| Msa0794420 | Msa1072350 | 0.805163 | 1.524320e-49 | -8.615850e-47 |
| Msa0794420 | Msa1076680 | 0.810609 | 1.058540e-50 | -8.615850e-47 |
| Msa0794420 | Msa1113200 | 0.803842 | 2.874256e-49 | -8.615850e-47 |
| Msa0794420 | Msa1159360 | 0.807340 | 5.301248e-50 | -8.615850e-47 |
| Msa0794420 | Msa1221200 | -0.833543 | 5.021908e-56 | -8.615850e-47 |
| Msa0794420 | Msa1265960 | 0.815378 | 9.530654e-52 | -8.615850e-47 |
| Msa0794420 | Msa1296960 | -0.801657 | 8.119870e-49 | -8.615850e-47 |
| Msa0794420 | Msa1317710 | 0.803788 | 2.949187e-49 | -8.615850e-47 |
| Msa0794420 | Msa1326000 | 0.809001 | 2.347094e-50 | -8.615850e-47 |
| Msa0794420 | Msa1335970 | -0.831150 | 1.965317e-55 | -8.615850e-47 |
| Msa0794420 | Msa1347290 | 0.807896 | 4.039582e-50 | -8.615850e-47 |
| Msa0794420 | Msa1358870 | -0.836249 | 1.045165e-56 | -8.615850e-47 |
| Msa0794420 | Msa1365040 | -0.821434 | 4.045721e-53 | -8.615850e-47 |
| Msa0794420 | Msa1373950 | 0.814877 | 1.231632e-51 | -8.615850e-47 |
| Msa0794420 | Msa1427830 | 0.803675 | 3.112384e-49 | -8.615850e-47 |
| Msa0794420 | Msa1431000 | 0.815287 | 9.988549e-52 | -8.615850e-47 |
| Msa0794420 | Msa1447560 | 0.803274 | 3.769457e-49 | -8.615850e-47 |
| Msa0794420 | Msa1449030 | 0.812507 | 4.095309e-51 | -8.615850e-47 |
| Msa0794420 | Msa1456810 | 0.830682 | 2.558897e-55 | -8.615850e-47 |
| Msa0794420 | Msa1457670 | -0.817468 | 3.246400e-52 | -8.615850e-47 |
| Msa0794420 | Msa1458550 | 0.810442 | 1.150541e-50 | -8.615850e-47 |
| Msa0794420 | Msa1460310 | -0.811500 | 6.788505e-51 | -8.615850e-47 |
| Msa0794420 | Msa1464560 | 0.806138 | 9.515544e-50 | -8.615850e-47 |
| Msa0159750 | Msa0794420 | 0.808217 | 3.451700e-50 | -8.615850e-47 |
| Msa0164360 | Msa0794420 | 0.811047 | 8.509006e-51 | -8.615850e-47 |
| Msa0181410 | Msa0794420 | 0.804555 | 2.042211e-49 | -8.615850e-47 |
| Msa0185640 | Msa0794420 | -0.801239 | 9.890559e-49 | -8.615850e-47 |
| Msa0208630 | Msa0794420 | 0.809513 | 1.823451e-50 | -8.615850e-47 |
| Msa0213090 | Msa0794420 | 0.807161 | 5.785799e-50 | -8.615850e-47 |
| Msa0223100 | Msa0794420 | 0.806704 | 7.228983e-50 | -8.615850e-47 |
| Msa0223290 | Msa0794420 | 0.808667 | 2.767206e-50 | -8.615850e-47 |
| Msa0223380 | Msa0794420 | 0.820415 | 6.941796e-53 | -8.615850e-47 |
| Msa0230770 | Msa0794420 | 0.806866 | 6.680369e-50 | -8.615850e-47 |
| Msa0371570 | Msa0794420 | 0.801984 | 6.956727e-49 | -8.615850e-47 |
| Msa0419620 | Msa0794420 | -0.803967 | 2.707524e-49 | -8.615850e-47 |
| Msa0442850 | Msa0794420 | 0.817478 | 3.229560e-52 | -8.615850e-47 |
| Msa0458790 | Msa0794420 | 0.810911 | 9.110185e-51 | -8.615850e-47 |
| Msa0464900 | Msa0794420 | 0.802905 | 4.493672e-49 | -8.615850e-47 |
| Msa0465680 | Msa0794420 | -0.816427 | 5.562594e-52 | -8.615850e-47 |
| Msa0465930 | Msa0794420 | 0.801777 | 7.672942e-49 | -8.615850e-47 |
| Msa0473240 | Msa0794420 | 0.822109 | 2.823513e-53 | -8.615850e-47 |
| Msa0240780 | Msa0794420 | 0.809837 | 1.553387e-50 | -8.615850e-47 |
| Msa0253370 | Msa0794420 | 0.828583 | 8.294839e-55 | -8.615850e-47 |
| Msa0264940 | Msa0794420 | -0.806331 | 8.665257e-50 | -8.615850e-47 |
| Msa0265380 | Msa0794420 | 0.807697 | 4.452922e-50 | -8.615850e-47 |
| Msa0270270 | Msa0794420 | 0.811396 | 7.148350e-51 | -8.615850e-47 |
| Msa0288240 | Msa0794420 | 0.805408 | 1.354609e-49 | -8.615850e-47 |
| Msa0302990 | Msa0794420 | -0.812226 | 4.715636e-51 | -8.615850e-47 |
| Msa0304740 | Msa0794420 | 0.801375 | 9.277633e-49 | -8.615850e-47 |
| Msa0325470 | Msa0794420 | 0.804767 | 1.844765e-49 | -8.615850e-47 |
| Msa0326670 | Msa0794420 | 0.806537 | 7.838373e-50 | -8.615850e-47 |
| Msa0330400 | Msa0794420 | 0.823393 | 1.418815e-53 | -8.615850e-47 |
| Msa0333720 | Msa0794420 | -0.807799 | 4.236106e-50 | -8.615850e-47 |
| Msa0490350 | Msa0794420 | 0.811558 | 6.594300e-51 | -8.615850e-47 |
| Msa0508200 | Msa0794420 | 0.824523 | 7.710139e-54 | -8.615850e-47 |
| Msa0540070 | Msa0794420 | 0.806331 | 8.665257e-50 | -8.615850e-47 |
| Msa0540320 | Msa0794420 | 0.825272 | 5.131914e-54 | -8.615850e-47 |
| Msa0582110 | Msa0794420 | 0.830778 | 2.424383e-55 | -8.615850e-47 |
| Msa0596100 | Msa0794420 | 0.830481 | 2.866663e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0794420 | MtrunA17_Chr5g0395991 | 83.088 | 136 | 21 | 2 | 52 | 186 | 1 | 135 | 1.37e-74 | 220 |
| Msa0794420 | MtrunA17_Chr5g0395981 | 87.719 | 57 | 7 | 0 | 1 | 57 | 43 | 99 | 7.99e-32 | 110 |
| Msa0794420 | MtrunA17_Chr8g0391441 | 33.333 | 132 | 73 | 4 | 32 | 163 | 25 | 141 | 1.44e-13 | 65.5 |
| Msa0794420 | MtrunA17_Chr3g0079081 | 31.847 | 157 | 89 | 6 | 41 | 182 | 59 | 212 | 9.55e-13 | 64.3 |
| Msa0794420 | MtrunA17_Chr4g0045011 | 30.872 | 149 | 76 | 8 | 38 | 177 | 61 | 191 | 1.15e-11 | 60.8 |
| Msa0794420 | MtrunA17_Chr4g0021021 | 27.976 | 168 | 92 | 6 | 41 | 186 | 31 | 191 | 1.85e-11 | 60.5 |
| Msa0794420 | MtrunA17_Chr8g0391401 | 30.667 | 150 | 85 | 5 | 36 | 182 | 4 | 137 | 4.13e-11 | 58.5 |
| Msa0794420 | MtrunA17_Chr4g0045001 | 30.827 | 133 | 71 | 6 | 32 | 161 | 42 | 156 | 5.79e-11 | 58.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0794420 | AT2G40935.8 | 55.080 | 187 | 77 | 4 | 2 | 182 | 3 | 188 | 7.53e-67 | 203 |
| Msa0794420 | AT2G40935.9 | 55.080 | 187 | 77 | 4 | 2 | 182 | 3 | 188 | 7.53e-67 | 203 |
| Msa0794420 | AT2G40935.1 | 55.080 | 187 | 77 | 4 | 2 | 182 | 3 | 188 | 7.53e-67 | 203 |
| Msa0794420 | AT2G40935.6 | 55.080 | 187 | 77 | 4 | 2 | 182 | 3 | 188 | 7.53e-67 | 203 |
| Msa0794420 | AT2G40935.5 | 55.080 | 187 | 77 | 4 | 2 | 182 | 3 | 188 | 7.53e-67 | 203 |
| Msa0794420 | AT2G40935.3 | 49.198 | 187 | 77 | 5 | 2 | 182 | 3 | 177 | 3.61e-54 | 170 |
| Msa0794420 | AT2G40935.2 | 57.031 | 128 | 53 | 2 | 56 | 182 | 38 | 164 | 2.20e-44 | 145 |
| Msa0794420 | AT2G40935.7 | 57.031 | 128 | 53 | 2 | 56 | 182 | 38 | 164 | 2.20e-44 | 145 |
| Msa0794420 | AT2G40935.4 | 57.031 | 128 | 53 | 2 | 56 | 182 | 38 | 164 | 2.20e-44 | 145 |
| Msa0794420 | AT5G35525.1 | 31.250 | 160 | 81 | 6 | 29 | 177 | 4 | 145 | 3.31e-12 | 61.6 |
| Msa0794420 | AT1G14870.1 | 29.518 | 166 | 85 | 7 | 23 | 177 | 1 | 145 | 1.19e-11 | 60.5 |
| Msa0794420 | AT1G14870.2 | 30.070 | 143 | 79 | 5 | 30 | 169 | 5 | 129 | 3.11e-11 | 58.9 |
Find 57 sgRNAs with CRISPR-Local
Find 199 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGGAAGAATGCAGAATTTC+TGG | 0.136909 | 5_3:+6329390 | Msa0794420:CDS |
| ACAATTTCGTTGATTGAAAT+TGG | 0.137293 | 5_3:-6327928 | None:intergenic |
| CTTTGTCCTTGCTACCTCTT+TGG | 0.163797 | 5_3:+6329370 | Msa0794420:CDS |
| CAAGACTCCACAATATAAAA+TGG | 0.183305 | 5_3:-6329444 | None:intergenic |
| TTATCGAAACATTGTGAAAA+AGG | 0.207368 | 5_3:-6327970 | None:intergenic |
| GGATCAAATCAATGGTCTTC+TGG | 0.256294 | 5_3:+6328313 | Msa0794420:CDS |
| ACCTTGGTTCTTCATAATAA+TGG | 0.263710 | 5_3:-6328197 | None:intergenic |
| CTGGGTTCTGGCACGTTCAT+GGG | 0.276161 | 5_3:+6329409 | Msa0794420:CDS |
| CAAATTATACTTTGATCTTA+AGG | 0.284771 | 5_3:-6329557 | None:intergenic |
| GAAACCCGTAAATCAGAAAA+TGG | 0.321254 | 5_3:-6327996 | None:intergenic |
| AATGCAGAATTTCTGGGTTC+TGG | 0.323080 | 5_3:+6329397 | Msa0794420:CDS |
| TTTGTCCTTGCTACCTCTTT+GGG | 0.333564 | 5_3:+6329371 | Msa0794420:CDS |
| AATTAAATTGTTTATAATGT+TGG | 0.351901 | 5_3:-6328034 | None:intergenic |
| GGCTTCTGTGCAGGTTGTAT+AGG | 0.363558 | 5_3:+6329343 | Msa0794420:intron |
| CAGCTCTTTCGCGTATTTCA+CGG | 0.371837 | 5_3:-6330525 | None:intergenic |
| AAGATCAAAGTATAATTTGC+CGG | 0.391461 | 5_3:+6329561 | Msa0794420:CDS |
| TGGAATCTGACTGCATTGTC+TGG | 0.399372 | 5_3:-6330600 | None:intergenic |
| GGGAAGAATGCAGAATTTCT+GGG | 0.403517 | 5_3:+6329391 | Msa0794420:CDS |
| TTCACAATCTTGCTTTGTAT+AGG | 0.422872 | 5_3:+6328123 | Msa0794420:five_prime_UTR |
| GTGAAATACGCGAAAGAGCT+GGG | 0.429175 | 5_3:+6330527 | Msa0794420:CDS |
| TCCACCTGCTTACATCCCAT+TGG | 0.441939 | 5_3:+6328228 | Msa0794420:CDS |
| CCACCTGCTTACATCCCATT+GGG | 0.443393 | 5_3:+6328229 | Msa0794420:CDS |
| TAAACAATTTAATTTCTCCT+TGG | 0.445477 | 5_3:+6328043 | Msa0794420:five_prime_UTR |
| CGTGAAATACGCGAAAGAGC+TGG | 0.454935 | 5_3:+6330526 | Msa0794420:CDS |
| AGGGTTGTGGCATTACTGAT+TGG | 0.487313 | 5_3:-6330620 | None:intergenic |
| AAGACTCCACAATATAAAAT+GGG | 0.490249 | 5_3:-6329443 | None:intergenic |
| AGGTAAGTTCACAGACTTTG+AGG | 0.504528 | 5_3:+6330185 | Msa0794420:CDS |
| ATTTCTCTTGAAAACACTCC+AGG | 0.515163 | 5_3:+6330216 | Msa0794420:CDS |
| GGTAAGTTCACAGACTTTGA+GGG | 0.515533 | 5_3:+6330186 | Msa0794420:CDS |
| GACTGCATTGTCTGGACAGG+TGG | 0.519769 | 5_3:-6330592 | None:intergenic |
| TCTGAATCTGATTGACCCAA+TGG | 0.522303 | 5_3:-6328244 | None:intergenic |
| TCTGACTGCATTGTCTGGAC+AGG | 0.526290 | 5_3:-6330595 | None:intergenic |
| ATTCTGCATTCTTCCCAAAG+AGG | 0.532916 | 5_3:-6329384 | None:intergenic |
| AAAAGGATGGATAAATAGAA+AGG | 0.534845 | 5_3:-6327953 | None:intergenic |
| GCCTGCTGCTTATTAACCGA+TGG | 0.548925 | 5_3:+6329475 | Msa0794420:CDS |
| TCTCCTCTACACCATGGTGG+TGG | 0.555785 | 5_3:+6328280 | Msa0794420:CDS |
| CACAAGCATAACACGAAACA+AGG | 0.556012 | 5_3:-6329522 | None:intergenic |
| GTAGCAATGGATCAAATCAA+TGG | 0.556803 | 5_3:+6328305 | Msa0794420:CDS |
| CATGGTGGTGGTAGTAGCAA+TGG | 0.568325 | 5_3:+6328292 | Msa0794420:CDS |
| TGAAGCTACAGATATGAAGC+TGG | 0.570972 | 5_3:+6330555 | Msa0794420:CDS |
| GCCATCGGTTAATAAGCAGC+AGG | 0.572611 | 5_3:-6329476 | None:intergenic |
| TGACCCAATGGGATGTAAGC+AGG | 0.573937 | 5_3:-6328232 | None:intergenic |
| TTCTTCCCAAAGAGGTAGCA+AGG | 0.573956 | 5_3:-6329376 | None:intergenic |
| TGGGTTCTGGCACGTTCATG+GGG | 0.574682 | 5_3:+6329410 | Msa0794420:CDS |
| TAACACGAAACAAGGCATCC+AGG | 0.577372 | 5_3:-6329514 | None:intergenic |
| CTTGTTTCGTGTTATGCTTG+TGG | 0.581137 | 5_3:+6329523 | Msa0794420:CDS |
| CTGAATCTGATTGACCCAAT+GGG | 0.585943 | 5_3:-6328243 | None:intergenic |
| CTACCACCACCATGGTGTAG+AGG | 0.589434 | 5_3:-6328283 | None:intergenic |
| TCCATTATTATGAAGAACCA+AGG | 0.591583 | 5_3:+6328196 | Msa0794420:exon |
| ACTTTGATCTTAAGGTATTG+CGG | 0.618835 | 5_3:-6329549 | None:intergenic |
| TGAAATACGCGAAAGAGCTG+GGG | 0.629440 | 5_3:+6330528 | Msa0794420:CDS |
| CCCAATGGGATGTAAGCAGG+TGG | 0.640544 | 5_3:-6328229 | None:intergenic |
| CAGGTGGAACATAACCACCT+TGG | 0.653627 | 5_3:-6328213 | None:intergenic |
| CATTGCTACTACCACCACCA+TGG | 0.662654 | 5_3:-6328291 | None:intergenic |
| GTCTCTCCTCTACACCATGG+TGG | 0.675080 | 5_3:+6328277 | Msa0794420:CDS |
| ATTATTATGAAGAACCAAGG+TGG | 0.688442 | 5_3:+6328199 | Msa0794420:exon |
| AGTGTCTCTCCTCTACACCA+TGG | 0.703188 | 5_3:+6328274 | Msa0794420:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTAAATTGTTTATAATGT+TGG | - | chr5_3:6328037-6328056 | None:intergenic | 10.0% |
| !! | AATCTAAAAAGAATAAAAAA+TGG | - | chr5_3:6328081-6328100 | None:intergenic | 10.0% |
| !!! | TTTTATTCTTTTTAGATTTA+TGG | + | chr5_3:6328083-6328102 | Msa0794420:five_prime_UTR | 10.0% |
| !!! | TTTATTCTTTTTAGATTTAT+GGG | + | chr5_3:6328084-6328103 | Msa0794420:five_prime_UTR | 10.0% |
| !! | TTATTTGATGTATATATAAA+GGG | + | chr5_3:6329025-6329044 | Msa0794420:intron | 10.0% |
| !! | GTTATTTGATGTATATATAA+AGG | + | chr5_3:6329024-6329043 | Msa0794420:intron | 15.0% |
| !! | AAAAATCATTTGACTAATTA+CGG | - | chr5_3:6329186-6329205 | None:intergenic | 15.0% |
| !! | AGTAAATTTGAAGAATAATT+AGG | + | chr5_3:6329788-6329807 | Msa0794420:intron | 15.0% |
| !! | TTAATAATGAAAAGAAAATC+TGG | + | chr5_3:6330392-6330411 | Msa0794420:intron | 15.0% |
| !!! | AAATTCCATTTTCTGATTTA+CGG | + | chr5_3:6327991-6328010 | Msa0794420:five_prime_UTR | 20.0% |
| !!! | TAAACAATTTAATTTCTCCT+TGG | + | chr5_3:6328043-6328062 | Msa0794420:five_prime_UTR | 20.0% |
| !! | TTTGTATGTTTGTTTGTTTA+AGG | + | chr5_3:6328421-6328440 | Msa0794420:intron | 20.0% |
| !!! | AAGTTCTGAATTTTATTGTT+TGG | + | chr5_3:6328860-6328879 | Msa0794420:intron | 20.0% |
| !!! | AAAGATTGGTTTCAAATTTT+CGG | + | chr5_3:6329322-6329341 | Msa0794420:intron | 20.0% |
| !! | CAAATTATACTTTGATCTTA+AGG | - | chr5_3:6329560-6329579 | None:intergenic | 20.0% |
| !! | ATAAAATTTGATGTAAAGCA+TGG | - | chr5_3:6329601-6329620 | None:intergenic | 20.0% |
| !! | TAATAGTAAAAGAACTGTTT+AGG | + | chr5_3:6329818-6329837 | Msa0794420:intron | 20.0% |
| !! | ATGTGATAAAAATGAAAGAA+AGG | + | chr5_3:6329966-6329985 | Msa0794420:intron | 20.0% |
| !! | AGAAATTGAAATAAACTTGT+AGG | + | chr5_3:6330111-6330130 | Msa0794420:intron | 20.0% |
| !!! | AGATGCATTTTTTGAAAAAA+AGG | + | chr5_3:6330290-6330309 | Msa0794420:intron | 20.0% |
| !! | TGCTAAAATTTCTCTATTAA+AGG | - | chr5_3:6330321-6330340 | None:intergenic | 20.0% |
| !! | ACATCCAAAAAATTTAGATT+GGG | - | chr5_3:6330358-6330377 | None:intergenic | 20.0% |
| !!! | ATATTCTTTTTGTCTTATGA+AGG | + | chr5_3:6330438-6330457 | Msa0794420:intron | 20.0% |
| !! | ACAATTTCGTTGATTGAAAT+TGG | - | chr5_3:6327931-6327950 | None:intergenic | 25.0% |
| ! | AAAAGGATGGATAAATAGAA+AGG | - | chr5_3:6327956-6327975 | None:intergenic | 25.0% |
| ! | TTATCGAAACATTGTGAAAA+AGG | - | chr5_3:6327973-6327992 | None:intergenic | 25.0% |
| !! | AATTCCATTTTCTGATTTAC+GGG | + | chr5_3:6327992-6328011 | Msa0794420:five_prime_UTR | 25.0% |
| ! | ATACAAACATAATCAACAAG+AGG | - | chr5_3:6328408-6328427 | None:intergenic | 25.0% |
| ! | CTAAGAAAAATCTTCTACTA+AGG | - | chr5_3:6328587-6328606 | None:intergenic | 25.0% |
| ! | CATCCTAAAAATAGTATTCT+CGG | - | chr5_3:6328741-6328760 | None:intergenic | 25.0% |
| ! | TGTTTAACAAACATGAGAAA+AGG | - | chr5_3:6328909-6328928 | None:intergenic | 25.0% |
| ! | TAACTCACTGAACTTATTTA+TGG | + | chr5_3:6328950-6328969 | Msa0794420:intron | 25.0% |
| ! | ATAACTACTGATGTGAAATA+GGG | - | chr5_3:6329009-6329028 | None:intergenic | 25.0% |
| ! | AATAACTACTGATGTGAAAT+AGG | - | chr5_3:6329010-6329029 | None:intergenic | 25.0% |
| !! | ACTTTTTGTAACATACAGAA+AGG | - | chr5_3:6329268-6329287 | None:intergenic | 25.0% |
| !!! | TCTGTTTTTTTTCGATAAAC+TGG | + | chr5_3:6329292-6329311 | Msa0794420:intron | 25.0% |
| ! | AAGACTCCACAATATAAAAT+GGG | - | chr5_3:6329446-6329465 | None:intergenic | 25.0% |
| !! | AAGATCAAAGTATAATTTGC+CGG | + | chr5_3:6329561-6329580 | Msa0794420:CDS | 25.0% |
| ! | CATGGTTGTAATATTATTAC+CGG | - | chr5_3:6329583-6329602 | None:intergenic | 25.0% |
| ! | GAACAGAAAATAGAAAGAAA+AGG | - | chr5_3:6329638-6329657 | None:intergenic | 25.0% |
| !! | TTTCTTTCTATTTTCTGTTC+TGG | + | chr5_3:6329638-6329657 | Msa0794420:intron | 25.0% |
| ! | AATTGGGGTAAAATAGTAAA+TGG | + | chr5_3:6329741-6329760 | Msa0794420:intron | 25.0% |
| ! | AATAGTAAATGGTTCTTAAC+TGG | + | chr5_3:6329752-6329771 | Msa0794420:intron | 25.0% |
| ! | TATTCTTCAAATTTACTGAC+TGG | - | chr5_3:6329785-6329804 | None:intergenic | 25.0% |
| ! | ATACTCTCTTATGTAGAAAT+TGG | - | chr5_3:6330016-6330035 | None:intergenic | 25.0% |
| !!! | CAATTTCTAGTTTTCTTCTA+GGG | - | chr5_3:6330099-6330118 | None:intergenic | 25.0% |
| !!! | TCAATTTCTAGTTTTCTTCT+AGG | - | chr5_3:6330100-6330119 | None:intergenic | 25.0% |
| !!! | ATCACCCAATCTAAATTTTT+TGG | + | chr5_3:6330351-6330370 | Msa0794420:intron | 25.0% |
| ! | GACATCCAAAAAATTTAGAT+TGG | - | chr5_3:6330359-6330378 | None:intergenic | 25.0% |
| TTCACAATCTTGCTTTGTAT+AGG | + | chr5_3:6328123-6328142 | Msa0794420:five_prime_UTR | 30.0% | |
| TCCATTATTATGAAGAACCA+AGG | + | chr5_3:6328196-6328215 | Msa0794420:exon | 30.0% | |
| ! | ACCTTGGTTCTTCATAATAA+TGG | - | chr5_3:6328200-6328219 | None:intergenic | 30.0% |
| ATTATTATGAAGAACCAAGG+TGG | + | chr5_3:6328199-6328218 | Msa0794420:exon | 30.0% | |
| GATAGAATCTAGAAGATAGA+TGG | + | chr5_3:6328615-6328634 | Msa0794420:intron | 30.0% | |
| !!! | CGAGAATACTATTTTTAGGA+TGG | + | chr5_3:6328739-6328758 | Msa0794420:intron | 30.0% |
| TCACTGAACTTATTTATGGT+TGG | + | chr5_3:6328954-6328973 | Msa0794420:intron | 30.0% | |
| TAACTACTGATGTGAAATAG+GGG | - | chr5_3:6329008-6329027 | None:intergenic | 30.0% | |
| TGATGTATATATAAAGGGCA+TGG | + | chr5_3:6329030-6329049 | Msa0794420:intron | 30.0% | |
| CACAATGCATAATATATGCA+AGG | + | chr5_3:6329085-6329104 | Msa0794420:intron | 30.0% | |
| AAACTGGCAAATGAAAAGAT+TGG | + | chr5_3:6329308-6329327 | Msa0794420:intron | 30.0% | |
| ! | GTGTTACCCATTTTATATTG+TGG | + | chr5_3:6329437-6329456 | Msa0794420:CDS | 30.0% |
| CAAGACTCCACAATATAAAA+TGG | - | chr5_3:6329447-6329466 | None:intergenic | 30.0% | |
| !! | ACTTTGATCTTAAGGTATTG+CGG | - | chr5_3:6329552-6329571 | None:intergenic | 30.0% |
| ! | TGAGACTGGTTAATGTAATT+GGG | + | chr5_3:6329725-6329744 | Msa0794420:intron | 30.0% |
| AACTGTTTAGGTATGTTAGT+AGG | + | chr5_3:6329830-6329849 | Msa0794420:intron | 30.0% | |
| ACTGTTTAGGTATGTTAGTA+GGG | + | chr5_3:6329831-6329850 | Msa0794420:intron | 30.0% | |
| ! | CAGAATTTCTGAATCCTTTT+AGG | + | chr5_3:6330155-6330174 | Msa0794420:intron | 30.0% |
| CTAGGAAAATATTTAGGCAT+AGG | - | chr5_3:6330266-6330285 | None:intergenic | 30.0% | |
| CTGCAACTAGGAAAATATTT+AGG | - | chr5_3:6330272-6330291 | None:intergenic | 30.0% | |
| ACACAGATGACAACAAAAAT+GGG | - | chr5_3:6330488-6330507 | None:intergenic | 30.0% | |
| CGAAACATTGTGAAAAAGGA+TGG | - | chr5_3:6327969-6327988 | None:intergenic | 35.0% | |
| GAAACCCGTAAATCAGAAAA+TGG | - | chr5_3:6327999-6328018 | None:intergenic | 35.0% | |
| !! | AATGGATTTTTGTGAGACCA+AGG | - | chr5_3:6328063-6328082 | None:intergenic | 35.0% |
| GTAGCAATGGATCAAATCAA+TGG | + | chr5_3:6328305-6328324 | Msa0794420:CDS | 35.0% | |
| ! | CTTGGTGATTAAACAAGGTA+AGG | - | chr5_3:6328382-6328401 | None:intergenic | 35.0% |
| ! | CTTACCTTGTTTAATCACCA+AGG | + | chr5_3:6328380-6328399 | Msa0794420:intron | 35.0% |
| ACGAATGTAGGAGAAAAATG+AGG | + | chr5_3:6328542-6328561 | Msa0794420:intron | 35.0% | |
| CGAATGTAGGAGAAAAATGA+GGG | + | chr5_3:6328543-6328562 | Msa0794420:intron | 35.0% | |
| GAATGTAGGAGAAAAATGAG+GGG | + | chr5_3:6328544-6328563 | Msa0794420:intron | 35.0% | |
| GAATCTAGAAGATAGATGGA+TGG | + | chr5_3:6328619-6328638 | Msa0794420:intron | 35.0% | |
| GGATTGATTGATAAGCTCAT+TGG | + | chr5_3:6328640-6328659 | Msa0794420:intron | 35.0% | |
| TGATTGATAAGCTCATTGGT+TGG | + | chr5_3:6328644-6328663 | Msa0794420:intron | 35.0% | |
| CAGTACATGTTCCTTATTGT+GGG | - | chr5_3:6328710-6328729 | None:intergenic | 35.0% | |
| ACAGTACATGTTCCTTATTG+TGG | - | chr5_3:6328711-6328730 | None:intergenic | 35.0% | |
| CCTAAAAATAGTATTCTCGG+CGG | - | chr5_3:6328738-6328757 | None:intergenic | 35.0% | |
| !!! | ATTTTTAGGATGGATGACAC+TGG | + | chr5_3:6328749-6328768 | Msa0794420:intron | 35.0% |
| AAAAGATCTCACTGATCAGT+GGG | - | chr5_3:6328790-6328809 | None:intergenic | 35.0% | |
| TAAAAGATCTCACTGATCAG+TGG | - | chr5_3:6328791-6328810 | None:intergenic | 35.0% | |
| !! | TTTTGACTGCCTTGACAATA+AGG | + | chr5_3:6328826-6328845 | Msa0794420:intron | 35.0% |
| CTTGACAATAAGGATTAGGA+GGG | + | chr5_3:6328836-6328855 | Msa0794420:intron | 35.0% | |
| TTGACAATAAGGATTAGGAG+GGG | + | chr5_3:6328837-6328856 | Msa0794420:intron | 35.0% | |
| AACTACTGATGTGAAATAGG+GGG | - | chr5_3:6329007-6329026 | None:intergenic | 35.0% | |
| CATAATATATGCAAGGTCCA+GGG | + | chr5_3:6329092-6329111 | Msa0794420:intron | 35.0% | |
| !!! | CTCCATGCCCTTTTTTTTTT+GGG | - | chr5_3:6329136-6329155 | None:intergenic | 35.0% |
| !!! | ACTCCATGCCCTTTTTTTTT+TGG | - | chr5_3:6329137-6329156 | None:intergenic | 35.0% |
| ! | GTGAGACTGGTTAATGTAAT+TGG | + | chr5_3:6329724-6329743 | Msa0794420:intron | 35.0% |
| ! | GAGACTGGTTAATGTAATTG+GGG | + | chr5_3:6329726-6329745 | Msa0794420:intron | 35.0% |
| AGTAAATGGTTCTTAACTGG+AGG | + | chr5_3:6329755-6329774 | Msa0794420:intron | 35.0% | |
| TCTATAGGAAGTGAAAAGCT+GGG | - | chr5_3:6329872-6329891 | None:intergenic | 35.0% | |
| CTGATAGAGTTAGATAATGC+AGG | + | chr5_3:6330045-6330064 | Msa0794420:intron | 35.0% | |
| ! | AGTTAGATAATGCAGGTTGA+AGG | + | chr5_3:6330052-6330071 | Msa0794420:intron | 35.0% |
| ! | GTTAGATAATGCAGGTTGAA+GGG | + | chr5_3:6330053-6330072 | Msa0794420:intron | 35.0% |
| !! | AGTTTTCTTCTAGGGAAAAC+TGG | - | chr5_3:6330091-6330110 | None:intergenic | 35.0% |
| !! | GAATCCTTTTAGGTAGTTCA+AGG | + | chr5_3:6330165-6330184 | Msa0794420:intron | 35.0% |
| CTTACCTTGAACTACCTAAA+AGG | - | chr5_3:6330172-6330191 | None:intergenic | 35.0% | |
| ATTTCTCTTGAAAACACTCC+AGG | + | chr5_3:6330216-6330235 | Msa0794420:CDS | 35.0% | |
| CAAAAAATGCATCTGCAACT+AGG | - | chr5_3:6330284-6330303 | None:intergenic | 35.0% | |
| CACACAGATGACAACAAAAA+TGG | - | chr5_3:6330489-6330508 | None:intergenic | 35.0% | |
| CTGAATCTGATTGACCCAAT+GGG | - | chr5_3:6328246-6328265 | None:intergenic | 40.0% | |
| TCTGAATCTGATTGACCCAA+TGG | - | chr5_3:6328247-6328266 | None:intergenic | 40.0% | |
| GGATCAAATCAATGGTCTTC+TGG | + | chr5_3:6328313-6328332 | Msa0794420:CDS | 40.0% | |
| !! | ATAATCAACAAGAGGCACCT+TGG | - | chr5_3:6328400-6328419 | None:intergenic | 40.0% |
| AGAAAAATGAGGGGAACTAG+AGG | + | chr5_3:6328553-6328572 | Msa0794420:intron | 40.0% | |
| ! | TGATAAGCTCATTGGTTGGT+TGG | + | chr5_3:6328648-6328667 | Msa0794420:intron | 40.0% |
| GTTGGAACCTTATGTTGGAT+GGG | + | chr5_3:6328666-6328685 | Msa0794420:intron | 40.0% | |
| TGTTCCTTATTGTGGGTCTA+TGG | - | chr5_3:6328703-6328722 | None:intergenic | 40.0% | |
| !! | CCGCCGAGAATACTATTTTT+AGG | + | chr5_3:6328735-6328754 | Msa0794420:intron | 40.0% |
| ! | CAGTGAGATCTTTTACGAGT+AGG | + | chr5_3:6328796-6328815 | Msa0794420:intron | 40.0% |
| CTGCCTTGACAATAAGGATT+AGG | + | chr5_3:6328832-6328851 | Msa0794420:intron | 40.0% | |
| CCTCCTAATCCTTATTGTCA+AGG | - | chr5_3:6328838-6328857 | None:intergenic | 40.0% | |
| CCTTGACAATAAGGATTAGG+AGG | + | chr5_3:6328835-6328854 | Msa0794420:intron | 40.0% | |
| GCATAATATATGCAAGGTCC+AGG | + | chr5_3:6329091-6329110 | Msa0794420:intron | 40.0% | |
| GCCACCACCCAAAAAAAAAA+GGG | + | chr5_3:6329126-6329145 | Msa0794420:intron | 40.0% | |
| !!! | CATGCCCTTTTTTTTTTGGG+TGG | - | chr5_3:6329133-6329152 | None:intergenic | 40.0% |
| CACCCAAAAAAAAAAGGGCA+TGG | + | chr5_3:6329131-6329150 | Msa0794420:intron | 40.0% | |
| TTTGTCCTTGCTACCTCTTT+GGG | + | chr5_3:6329371-6329390 | Msa0794420:CDS | 40.0% | |
| ATTCTGCATTCTTCCCAAAG+AGG | - | chr5_3:6329387-6329406 | None:intergenic | 40.0% | |
| TGGGAAGAATGCAGAATTTC+TGG | + | chr5_3:6329390-6329409 | Msa0794420:CDS | 40.0% | |
| GGGAAGAATGCAGAATTTCT+GGG | + | chr5_3:6329391-6329410 | Msa0794420:CDS | 40.0% | |
| ! | AATGCAGAATTTCTGGGTTC+TGG | + | chr5_3:6329397-6329416 | Msa0794420:CDS | 40.0% |
| ! | ATTAACCGATGGCCTGTTTT+TGG | + | chr5_3:6329486-6329505 | Msa0794420:CDS | 40.0% |
| !! | TTAACCGATGGCCTGTTTTT+GGG | + | chr5_3:6329487-6329506 | Msa0794420:CDS | 40.0% |
| TAAACCCAAAAACAGGCCAT+CGG | - | chr5_3:6329494-6329513 | None:intergenic | 40.0% | |
| ATCCAGGTAAACCCAAAAAC+AGG | - | chr5_3:6329501-6329520 | None:intergenic | 40.0% | |
| CACAAGCATAACACGAAACA+AGG | - | chr5_3:6329525-6329544 | None:intergenic | 40.0% | |
| CTTGTTTCGTGTTATGCTTG+TGG | + | chr5_3:6329523-6329542 | Msa0794420:CDS | 40.0% | |
| !! | TGTTGCATTTTGAGTGAGAC+TGG | + | chr5_3:6329711-6329730 | Msa0794420:intron | 40.0% |
| CTATAGGAAGTGAAAAGCTG+GGG | - | chr5_3:6329871-6329890 | None:intergenic | 40.0% | |
| GTCTATAGGAAGTGAAAAGC+TGG | - | chr5_3:6329873-6329892 | None:intergenic | 40.0% | |
| AGGTAAGTTCACAGACTTTG+AGG | + | chr5_3:6330185-6330204 | Msa0794420:CDS | 40.0% | |
| GGTAAGTTCACAGACTTTGA+GGG | + | chr5_3:6330186-6330205 | Msa0794420:CDS | 40.0% | |
| TTCACGGTACTCTTGACAAA+TGG | - | chr5_3:6330512-6330531 | None:intergenic | 40.0% | |
| TGAAGCTACAGATATGAAGC+TGG | + | chr5_3:6330555-6330574 | Msa0794420:CDS | 40.0% | |
| ! | GGCACCTTGGTGATTAAACA+AGG | - | chr5_3:6328387-6328406 | None:intergenic | 45.0% |
| GTGCTAGATGACACGAATGT+AGG | + | chr5_3:6328530-6328549 | Msa0794420:intron | 45.0% | |
| ! | GGTTGGTTGGAACCTTATGT+TGG | + | chr5_3:6328661-6328680 | Msa0794420:intron | 45.0% |
| GGTTGGAACCTTATGTTGGA+TGG | + | chr5_3:6328665-6328684 | Msa0794420:intron | 45.0% | |
| CTTATGTTGGATGGGAAGAC+CGG | + | chr5_3:6328674-6328693 | Msa0794420:intron | 45.0% | |
| TATTGTGGGTCTATGGTAGC+CGG | - | chr5_3:6328696-6328715 | None:intergenic | 45.0% | |
| GCTACCATAGACCCACAATA+AGG | + | chr5_3:6328696-6328715 | Msa0794420:intron | 45.0% | |
| ATCTCACTGATCAGTGGGAT+AGG | - | chr5_3:6328785-6328804 | None:intergenic | 45.0% | |
| !!! | TTTTTTTTGGGTGGTGGCCA+GGG | - | chr5_3:6329124-6329143 | None:intergenic | 45.0% |
| !!! | TTTTTTTTTGGGTGGTGGCC+AGG | - | chr5_3:6329125-6329144 | None:intergenic | 45.0% |
| GGCCACCACCCAAAAAAAAA+AGG | + | chr5_3:6329125-6329144 | Msa0794420:intron | 45.0% | |
| !!! | GCCCTTTTTTTTTTGGGTGG+TGG | - | chr5_3:6329130-6329149 | None:intergenic | 45.0% |
| ! | CAAATTTTCGGCTTCTGTGC+AGG | + | chr5_3:6329334-6329353 | Msa0794420:intron | 45.0% |
| CTTTGTCCTTGCTACCTCTT+TGG | + | chr5_3:6329370-6329389 | Msa0794420:CDS | 45.0% | |
| TTCTTCCCAAAGAGGTAGCA+AGG | - | chr5_3:6329379-6329398 | None:intergenic | 45.0% | |
| ! | TAACACGAAACAAGGCATCC+AGG | - | chr5_3:6329517-6329536 | None:intergenic | 45.0% |
| !! | TGCTGCTACTTGCTGTCTAT+AGG | - | chr5_3:6329887-6329906 | None:intergenic | 45.0% |
| ! | TGAAAACACTCCAGGTACTG+TGG | + | chr5_3:6330224-6330243 | Msa0794420:intron | 45.0% |
| !! | TTATGAAGGAAGCACCGTGT+GGG | + | chr5_3:6330452-6330471 | Msa0794420:intron | 45.0% |
| TGGGTTACAAAATCCCCACA+CGG | - | chr5_3:6330469-6330488 | None:intergenic | 45.0% | |
| CAGCTCTTTCGCGTATTTCA+CGG | - | chr5_3:6330528-6330547 | None:intergenic | 45.0% | |
| GTGAAATACGCGAAAGAGCT+GGG | + | chr5_3:6330527-6330546 | Msa0794420:CDS | 45.0% | |
| TGAAATACGCGAAAGAGCTG+GGG | + | chr5_3:6330528-6330547 | Msa0794420:CDS | 45.0% | |
| TGGAATCTGACTGCATTGTC+TGG | - | chr5_3:6330603-6330622 | None:intergenic | 45.0% | |
| !!! | TAAGTAATTAATTAATTTTT+TGG | + | chr5_3:6328153-6328172 | Msa0794420:five_prime_UTR | 5.0% |
| CAGGTGGAACATAACCACCT+TGG | - | chr5_3:6328216-6328235 | None:intergenic | 50.0% | |
| TCCACCTGCTTACATCCCAT+TGG | + | chr5_3:6328228-6328247 | Msa0794420:CDS | 50.0% | |
| CCACCTGCTTACATCCCATT+GGG | + | chr5_3:6328229-6328248 | Msa0794420:CDS | 50.0% | |
| TGACCCAATGGGATGTAAGC+AGG | - | chr5_3:6328235-6328254 | None:intergenic | 50.0% | |
| AGTGTCTCTCCTCTACACCA+TGG | + | chr5_3:6328274-6328293 | Msa0794420:CDS | 50.0% | |
| CATTGCTACTACCACCACCA+TGG | - | chr5_3:6328294-6328313 | None:intergenic | 50.0% | |
| !! | CATGGTGGTGGTAGTAGCAA+TGG | + | chr5_3:6328292-6328311 | Msa0794420:CDS | 50.0% |
| CGGTCTTCCCATCCAACATA+AGG | - | chr5_3:6328676-6328695 | None:intergenic | 50.0% | |
| GGCTTCTGTGCAGGTTGTAT+AGG | + | chr5_3:6329343-6329362 | Msa0794420:intron | 50.0% | |
| ! | GCCTGCTGCTTATTAACCGA+TGG | + | chr5_3:6329475-6329494 | Msa0794420:CDS | 50.0% |
| ! | GCCATCGGTTAATAAGCAGC+AGG | - | chr5_3:6329479-6329498 | None:intergenic | 50.0% |
| !!! | GGCCTGTTTTTGGGTTTACC+TGG | + | chr5_3:6329496-6329515 | Msa0794420:CDS | 50.0% |
| GTAGCAGCAACTTTGAGTCC+TGG | + | chr5_3:6329898-6329917 | Msa0794420:intron | 50.0% | |
| CTCATCTCAGATGATGTGCC+AGG | - | chr5_3:6329919-6329938 | None:intergenic | 50.0% | |
| !! | GAGAAGTGTTCCACAGTACC+TGG | - | chr5_3:6330237-6330256 | None:intergenic | 50.0% |
| !! | CTTATGAAGGAAGCACCGTG+TGG | + | chr5_3:6330451-6330470 | Msa0794420:intron | 50.0% |
| !! | TATGAAGGAAGCACCGTGTG+GGG | + | chr5_3:6330453-6330472 | Msa0794420:intron | 50.0% |
| CGTGAAATACGCGAAAGAGC+TGG | + | chr5_3:6330526-6330545 | Msa0794420:CDS | 50.0% | |
| TCTGACTGCATTGTCTGGAC+AGG | - | chr5_3:6330598-6330617 | None:intergenic | 50.0% | |
| CCCAATGGGATGTAAGCAGG+TGG | - | chr5_3:6328232-6328251 | None:intergenic | 55.0% | |
| GTCTCTCCTCTACACCATGG+TGG | + | chr5_3:6328277-6328296 | Msa0794420:CDS | 55.0% | |
| TCTCCTCTACACCATGGTGG+TGG | + | chr5_3:6328280-6328299 | Msa0794420:CDS | 55.0% | |
| CTACCACCACCATGGTGTAG+AGG | - | chr5_3:6328286-6328305 | None:intergenic | 55.0% | |
| CCAACTGAGCTAAGCTCACG+AGG | - | chr5_3:6329061-6329080 | None:intergenic | 55.0% | |
| CCTCGTGAGCTTAGCTCAGT+TGG | + | chr5_3:6329058-6329077 | Msa0794420:intron | 55.0% | |
| AAGGTCCAGGGTTCAAACCC+TGG | + | chr5_3:6329104-6329123 | Msa0794420:intron | 55.0% | |
| ! | TCTGGGTTCTGGCACGTTCA+TGG | + | chr5_3:6329408-6329427 | Msa0794420:CDS | 55.0% |
| ! | CTGGGTTCTGGCACGTTCAT+GGG | + | chr5_3:6329409-6329428 | Msa0794420:CDS | 55.0% |
| ! | TGGGTTCTGGCACGTTCATG+GGG | + | chr5_3:6329410-6329429 | Msa0794420:CDS | 55.0% |
| GACTGCATTGTCTGGACAGG+TGG | - | chr5_3:6330595-6330614 | None:intergenic | 55.0% | |
| GGTGGCCAGGGTTTGAACCC+TGG | - | chr5_3:6329112-6329131 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 6327912 | 6330630 | 6327912 | ID=Msa0794420;Name=Msa0794420 |
| chr5_3 | mRNA | 6327912 | 6330630 | 6327912 | ID=Msa0794420-mRNA-1;Parent=Msa0794420;Name=Msa0794420-mRNA-1;_AED=0.32;_eAED=0.32;_QI=293|0.33|0.5|1|1|1|4|0|186 |
| chr5_3 | exon | 6327912 | 6328367 | 6327912 | ID=Msa0794420-mRNA-1:exon:2530;Parent=Msa0794420-mRNA-1 |
| chr5_3 | exon | 6329356 | 6329582 | 6329356 | ID=Msa0794420-mRNA-1:exon:2531;Parent=Msa0794420-mRNA-1 |
| chr5_3 | exon | 6330177 | 6330237 | 6330177 | ID=Msa0794420-mRNA-1:exon:2532;Parent=Msa0794420-mRNA-1 |
| chr5_3 | exon | 6330521 | 6330630 | 6330521 | ID=Msa0794420-mRNA-1:exon:2533;Parent=Msa0794420-mRNA-1 |
| chr5_3 | five_prime_UTR | 6327912 | 6328204 | 6327912 | ID=Msa0794420-mRNA-1:five_prime_utr;Parent=Msa0794420-mRNA-1 |
| chr5_3 | CDS | 6328205 | 6328367 | 6328205 | ID=Msa0794420-mRNA-1:cds;Parent=Msa0794420-mRNA-1 |
| chr5_3 | CDS | 6329356 | 6329582 | 6329356 | ID=Msa0794420-mRNA-1:cds;Parent=Msa0794420-mRNA-1 |
| chr5_3 | CDS | 6330177 | 6330237 | 6330177 | ID=Msa0794420-mRNA-1:cds;Parent=Msa0794420-mRNA-1 |
| chr5_3 | CDS | 6330521 | 6330630 | 6330521 | ID=Msa0794420-mRNA-1:cds;Parent=Msa0794420-mRNA-1 |
| Gene Sequence |
| Protein sequence |
