AlfalfaGEDB | Msa0834940

M. sativa cultivar zhongmu-4 / Msa0834940

KEGG: -
GO: -
PFAM: PF13912.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0834940	ADI60287.1	98.824	255	2	1	1	255	1	254	0.0	514

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0834940	sp\|O80942\|ZFP10_ARATH	57.303	89	26	3	45	129	7	87	4.84e-24	101

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0834940	D7R6G4	98.824	255	2	1	1	255	1	254	0.0	514

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TFs/TRs:

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Gene ID	Type	Classification
Msa0834940	TF	C2H2

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0710880	Msa0834940	0.844132	9.137010e-59	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0834940	MtrunA17_Chr5g0400571	95.294	255	8	2	1	255	1	251	7.07e-179	491
Msa0834940	MtrunA17_Chr5g0435711	36.250	240	113	11	38	251	4	229	2.17e-27	105
Msa0834940	MtrunA17_Chr4g0009461	38.378	185	79	7	61	215	35	214	8.58e-25	100
Msa0834940	MtrunA17_Chr3g0112181	73.684	57	14	1	62	117	33	89	3.36e-24	97.8
Msa0834940	MtrunA17_Chr2g0315591	87.805	41	5	0	80	120	47	87	1.10e-21	90.1
Msa0834940	MtrunA17_Chr1g0184381	80.000	40	8	0	78	117	30	69	5.37e-18	79.3
Msa0834940	MtrunA17_Chr7g0239441	76.471	34	8	0	83	116	37	70	1.30e-13	66.6
Msa0834940	MtrunA17_Chr4g0032111	32.749	171	85	4	82	252	20	160	2.36e-13	66.2
Msa0834940	MtrunA17_Chr1g0184331	45.070	71	35	1	83	153	38	104	2.31e-12	62.8
Msa0834940	MtrunA17_Chr1g0187231	31.551	187	88	9	83	249	18	184	4.50e-12	63.2

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0834940	AT4G17810.1	42.982	228	87	9	41	252	3	203	1.07e-43	147
Msa0834940	AT4G17810.2	40.271	221	73	11	41	252	3	173	8.22e-36	125
Msa0834940	AT2G37740.1	57.303	89	26	3	45	129	7	87	4.92e-25	101
Msa0834940	AT5G06070.1	36.493	211	92	8	64	252	32	222	2.08e-23	95.1
Msa0834940	AT2G42410.2	34.667	225	93	8	53	249	14	212	2.77e-20	86.7
Msa0834940	AT2G42410.1	34.667	225	93	8	53	249	14	212	2.77e-20	86.7
Msa0834940	AT2G42410.3	34.667	225	93	8	53	249	40	238	5.26e-20	86.3
Msa0834940	AT3G23130.1	71.429	49	14	0	70	118	32	80	9.40e-20	84.7
Msa0834940	AT3G09290.1	73.529	34	9	0	83	116	33	66	7.70e-13	65.5

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Find 61 sgRNAs with CRISPR-Local

Find 132 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGCCAATATCTGTAGCCA+TGG	0.572452	5_4:+8226479	None:intergenic
AAAGTGCAGGTATAAGACCT+TGG	0.621514	5_4:+8226234	None:intergenic
AACAAGAAGATGAAGATTCA+TGG	0.412727	5_4:-8226311	Msa0834940:CDS
AAGTTGATGATGATGGTGAA+GGG	0.633965	5_4:+8226370	None:intergenic
ACAAGAAGATGAAGATTCAT+GGG	0.528846	5_4:-8226310	Msa0834940:CDS
AGAAGATGAAGATTCATGGG+AGG	0.682315	5_4:-8226307	Msa0834940:CDS
AGGTGCAAGTAGCATGTTGA+TGG	0.551205	5_4:+8225809	None:intergenic
AGTACCATGGCTACAGATAT+TGG	0.374674	5_4:-8226483	None:intergenic
AGTTGATGATGATGGTGAAG+GGG	0.689572	5_4:+8226371	None:intergenic
ATATTTATGAATGGTGATGA+AGG	0.596989	5_4:+8226102	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACAAGAAGATGAAGATTCA+TGG	-	chr5_4:8225898-8225917	Msa0834940:CDS	30.0%
ACAAGAAGATGAAGATTCAT+GGG	-	chr5_4:8225899-8225918	Msa0834940:CDS	30.0%
GGAATATTATGAACACAACA+TGG	-	chr5_4:8225949-8225968	Msa0834940:CDS	30.0%
GAAGGATGAGATGAATTTAA+CGG	+	chr5_4:8226092-8226111	None:intergenic	30.0%
TGTGGAGGAATATTTATGAA+TGG	+	chr5_4:8226119-8226138	None:intergenic	30.0%
ATTAGGACTAGAACTATTGT+AGG	+	chr5_4:8226216-8226235	None:intergenic	30.0%
TGCATCATCAAATTATTTGG+AGG	+	chr5_4:8226287-8226306	None:intergenic	30.0%
AACAAGAAGATGAAGATTCA+TGG	-	chr5_4:8225898-8225917	Msa0834940:CDS	30.0%
ACAAGAAGATGAAGATTCAT+GGG	-	chr5_4:8225899-8225918	Msa0834940:CDS	30.0%
GGAATATTATGAACACAACA+TGG	-	chr5_4:8225949-8225968	Msa0834940:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_4	gene	8225732	8226499	8225732	ID=Msa0834940;Name=Msa0834940
chr5_4	mRNA	8225732	8226499	8225732	ID=Msa0834940-mRNA-1;Parent=Msa0834940;Name=Msa0834940-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|255
chr5_4	exon	8225732	8226499	8225732	ID=Msa0834940-mRNA-1:exon:3652;Parent=Msa0834940-mRNA-1
chr5_4	CDS	8225732	8226499	8225732	ID=Msa0834940-mRNA-1:cds;Parent=Msa0834940-mRNA-1

Gene Sequence

>Msa0834940

ATGGCTACAGATATTGGCTTTCTTTCCAATATGACTCAGATCCGAAAATCATCACAATCACAATCTCAACAACACCAACCAAACCCTAACTCCAACACCACTACAACCCCTTCACCATCATCATCAACTTGGATGTGGAACCCTAAACAACACCAACAGCAACAAGAACAAGAAGATGAAGATTCATGGGAGGTAAGGGCTTTTGCTGAAGACACAAGGAATATTATGAACACAACATGGCCACCAAGGTCTTATACCTGCACTTTTTGCAGAAGAGAGTTCCGGTCAGCTCAAGCTCTTGGTGGTCACATGAATGTTCACCGCCGCGACCGTGCTCGTCTCCATCAAAGCCAACCACCGTTAAATTCATCTCATCCTTCATCACCATTCATAAATATTCCTCCACAAGAGCTTGTTGCTAATGCTGGATTGTGCCTTCTTTACCATTTACCAAACCCTAATAATAATAATGCTTTTGCTTCCTACAATAGTTCTAGTCCTAATGGAGAATCTCCTTCTACTTTTCTCTCAATCTCATCATCAACATCTTATCCTCCAAATAATTTGATGATGCAAATGCAAACTTGTTCTCCATCTTTTAATTTTCAAGTGGATAATTCAGCTAGGTTGATCAATAATAGCATTTCTTCTTTTTCTAGCAAAGTGGACCATCAACATGCTACTTGCACCTCCATTGATGATAACGGTCATGAAATTGAAGAGCTTGATCTTGAGCTCCGTTTAGGGAACAAGCCAACACCAACTTGA

Protein sequence

>Msa0834940

MATDIGFLSNMTQIRKSSQSQSQQHQPNPNSNTTTTPSPSSSTWMWNPKQHQQQQEQEDEDSWEVRAFAEDTRNIMNTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRARLHQSQPPLNSSHPSSPFINIPPQELVANAGLCLLYHLPNPNNNNAFASYNSSSPNGESPSTFLSISSSTSYPPNNLMMQMQTCSPSFNFQVDNSARLINNSISSFSSKVDHQHATCTSIDDNGHEIEELDLELRLGNKPTPT*