Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0834940 | ADI60287.1 | 98.824 | 255 | 2 | 1 | 1 | 255 | 1 | 254 | 0.0 | 514 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0834940 | sp|O80942|ZFP10_ARATH | 57.303 | 89 | 26 | 3 | 45 | 129 | 7 | 87 | 4.84e-24 | 101 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0834940 | D7R6G4 | 98.824 | 255 | 2 | 1 | 1 | 255 | 1 | 254 | 0.0 | 514 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0834940 | TF | C2H2 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0710880 | Msa0834940 | 0.844132 | 9.137010e-59 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0834940 | MtrunA17_Chr5g0400571 | 95.294 | 255 | 8 | 2 | 1 | 255 | 1 | 251 | 7.07e-179 | 491 |
| Msa0834940 | MtrunA17_Chr5g0435711 | 36.250 | 240 | 113 | 11 | 38 | 251 | 4 | 229 | 2.17e-27 | 105 |
| Msa0834940 | MtrunA17_Chr4g0009461 | 38.378 | 185 | 79 | 7 | 61 | 215 | 35 | 214 | 8.58e-25 | 100 |
| Msa0834940 | MtrunA17_Chr3g0112181 | 73.684 | 57 | 14 | 1 | 62 | 117 | 33 | 89 | 3.36e-24 | 97.8 |
| Msa0834940 | MtrunA17_Chr2g0315591 | 87.805 | 41 | 5 | 0 | 80 | 120 | 47 | 87 | 1.10e-21 | 90.1 |
| Msa0834940 | MtrunA17_Chr1g0184381 | 80.000 | 40 | 8 | 0 | 78 | 117 | 30 | 69 | 5.37e-18 | 79.3 |
| Msa0834940 | MtrunA17_Chr7g0239441 | 76.471 | 34 | 8 | 0 | 83 | 116 | 37 | 70 | 1.30e-13 | 66.6 |
| Msa0834940 | MtrunA17_Chr4g0032111 | 32.749 | 171 | 85 | 4 | 82 | 252 | 20 | 160 | 2.36e-13 | 66.2 |
| Msa0834940 | MtrunA17_Chr1g0184331 | 45.070 | 71 | 35 | 1 | 83 | 153 | 38 | 104 | 2.31e-12 | 62.8 |
| Msa0834940 | MtrunA17_Chr1g0187231 | 31.551 | 187 | 88 | 9 | 83 | 249 | 18 | 184 | 4.50e-12 | 63.2 |
| Msa0834940 | MtrunA17_Chr1g0168181 | 37.931 | 87 | 36 | 2 | 58 | 135 | 10 | 87 | 8.65e-11 | 59.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0834940 | AT4G17810.1 | 42.982 | 228 | 87 | 9 | 41 | 252 | 3 | 203 | 1.07e-43 | 147 |
| Msa0834940 | AT4G17810.2 | 40.271 | 221 | 73 | 11 | 41 | 252 | 3 | 173 | 8.22e-36 | 125 |
| Msa0834940 | AT2G37740.1 | 57.303 | 89 | 26 | 3 | 45 | 129 | 7 | 87 | 4.92e-25 | 101 |
| Msa0834940 | AT5G06070.1 | 36.493 | 211 | 92 | 8 | 64 | 252 | 32 | 222 | 2.08e-23 | 95.1 |
| Msa0834940 | AT2G42410.2 | 34.667 | 225 | 93 | 8 | 53 | 249 | 14 | 212 | 2.77e-20 | 86.7 |
| Msa0834940 | AT2G42410.1 | 34.667 | 225 | 93 | 8 | 53 | 249 | 14 | 212 | 2.77e-20 | 86.7 |
| Msa0834940 | AT2G42410.3 | 34.667 | 225 | 93 | 8 | 53 | 249 | 40 | 238 | 5.26e-20 | 86.3 |
| Msa0834940 | AT3G23130.1 | 71.429 | 49 | 14 | 0 | 70 | 118 | 32 | 80 | 9.40e-20 | 84.7 |
| Msa0834940 | AT3G09290.1 | 73.529 | 34 | 9 | 0 | 83 | 116 | 33 | 66 | 7.70e-13 | 65.5 |
Find 61 sgRNAs with CRISPR-Local
Find 132 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCAAAAGCATTATTATTATT+AGG | 0.154031 | 5_4:+8226021 | None:intergenic |
| TATTATTAGGGTTTGGTAAA+TGG | 0.178618 | 5_4:+8226034 | None:intergenic |
| GTTGTAGTGGTGTTGGAGTT+AGG | 0.193934 | 5_4:+8226393 | None:intergenic |
| ATTTGCATCATCAAATTATT+TGG | 0.195764 | 5_4:+8225922 | None:intergenic |
| GTTGCTGTTGGTGTTGTTTA+GGG | 0.261033 | 5_4:+8226337 | None:intergenic |
| TGTTGCTGTTGGTGTTGTTT+AGG | 0.267605 | 5_4:+8226336 | None:intergenic |
| CAAAAGCATTATTATTATTA+GGG | 0.268434 | 5_4:+8226022 | None:intergenic |
| TTGTAGTGGTGTTGGAGTTA+GGG | 0.287569 | 5_4:+8226394 | None:intergenic |
| TTAACGGTGGTTGGCTTTGA+TGG | 0.294750 | 5_4:+8226136 | None:intergenic |
| CTTGATCTTGAGCTCCGTTT+AGG | 0.296503 | 5_4:-8225754 | Msa0834940:CDS |
| CTTCTTGTTCTTGTTGCTGT+TGG | 0.353443 | 5_4:+8226325 | None:intergenic |
| TACAATAGTTCTAGTCCTAA+TGG | 0.356996 | 5_4:-8225994 | Msa0834940:CDS |
| TTGATCTTGAGCTCCGTTTA+GGG | 0.364351 | 5_4:-8225753 | Msa0834940:CDS |
| AGTACCATGGCTACAGATAT+TGG | 0.374674 | 5_4:-8226483 | None:intergenic |
| GAGATTGAGAGAAAAGTAGA+AGG | 0.386084 | 5_4:+8225964 | None:intergenic |
| GTAGAAGGAGATTCTCCATT+AGG | 0.392764 | 5_4:+8225979 | None:intergenic |
| TTCATGACCGTTATCATCAA+TGG | 0.401936 | 5_4:+8225786 | None:intergenic |
| GCATTATTATTATTAGGGTT+TGG | 0.403821 | 5_4:+8226027 | None:intergenic |
| TGTTGGAGTTAGGGTTTGGT+TGG | 0.408721 | 5_4:+8226403 | None:intergenic |
| AACAAGAAGATGAAGATTCA+TGG | 0.412727 | 5_4:-8226311 | Msa0834940:CDS |
| CAAGAGCTTGTTGCTAATGC+TGG | 0.417258 | 5_4:-8226072 | Msa0834940:CDS |
| GTGTTGGCTTGTTCCCTAAA+CGG | 0.435644 | 5_4:+8225740 | None:intergenic |
| GTGGTGTTGGAGTTAGGGTT+TGG | 0.437650 | 5_4:+8226399 | None:intergenic |
| TCCACTTGAAAATTAAAAGA+TGG | 0.441538 | 5_4:+8225886 | None:intergenic |
| TGAAGGGGTTGTAGTGGTGT+TGG | 0.446031 | 5_4:+8226386 | None:intergenic |
| ATTAGGACTAGAACTATTGT+AGG | 0.449818 | 5_4:+8225996 | None:intergenic |
| ATGAAGATTCATGGGAGGTA+AGG | 0.450992 | 5_4:-8226302 | Msa0834940:CDS |
| TTCCGGTCAGCTCAAGCTCT+TGG | 0.471669 | 5_4:-8226198 | Msa0834940:CDS |
| GAGATGAATTTAACGGTGGT+TGG | 0.484111 | 5_4:+8226127 | None:intergenic |
| TGCATCATCAAATTATTTGG+AGG | 0.491401 | 5_4:+8225925 | None:intergenic |
| GGTTTGGTAAATGGTAAAGA+AGG | 0.506848 | 5_4:+8226043 | None:intergenic |
| CTTCACCATCATCATCAACT+TGG | 0.509068 | 5_4:-8226368 | Msa0834940:CDS |
| CGGTCAGCTCAAGCTCTTGG+TGG | 0.515963 | 5_4:-8226195 | Msa0834940:CDS |
| GATGGAGACGAGCACGGTCG+CGG | 0.516231 | 5_4:+8226154 | None:intergenic |
| ACAAGAAGATGAAGATTCAT+GGG | 0.528846 | 5_4:-8226310 | Msa0834940:CDS |
| CACCAAGAGCTTGAGCTGAC+CGG | 0.533757 | 5_4:+8226196 | None:intergenic |
| TGAAGATTCATGGGAGGTAA+GGG | 0.539677 | 5_4:-8226301 | Msa0834940:CDS |
| TGTGGAGGAATATTTATGAA+TGG | 0.545539 | 5_4:+8226093 | None:intergenic |
| GAAGGATGAGATGAATTTAA+CGG | 0.547030 | 5_4:+8226120 | None:intergenic |
| AGGTGCAAGTAGCATGTTGA+TGG | 0.551205 | 5_4:+8225809 | None:intergenic |
| CACATCCAAGTTGATGATGA+TGG | 0.567674 | 5_4:+8226363 | None:intergenic |
| TGCACCTCCATTGATGATAA+CGG | 0.570866 | 5_4:-8225793 | Msa0834940:CDS |
| AAAGCCAATATCTGTAGCCA+TGG | 0.572452 | 5_4:+8226479 | None:intergenic |
| GCATTAGCAACAAGCTCTTG+TGG | 0.586992 | 5_4:+8226075 | None:intergenic |
| GGCTTTGATGGAGACGAGCA+CGG | 0.589738 | 5_4:+8226148 | None:intergenic |
| CATCATCATCAACTTGGATG+TGG | 0.591753 | 5_4:-8226362 | Msa0834940:CDS |
| ATATTTATGAATGGTGATGA+AGG | 0.596989 | 5_4:+8226102 | None:intergenic |
| TGATGGTGAAGGGGTTGTAG+TGG | 0.613406 | 5_4:+8226380 | None:intergenic |
| GTGCAGGTATAAGACCTTGG+TGG | 0.619194 | 5_4:+8226237 | None:intergenic |
| AAAGTGCAGGTATAAGACCT+TGG | 0.621514 | 5_4:+8226234 | None:intergenic |
| TTCAAGTGGATAATTCAGCT+AGG | 0.628424 | 5_4:-8225873 | Msa0834940:CDS |
| CAAGTTGATGATGATGGTGA+AGG | 0.632187 | 5_4:+8226369 | None:intergenic |
| AAGTTGATGATGATGGTGAA+GGG | 0.633965 | 5_4:+8226370 | None:intergenic |
| ATGACCGTTATCATCAATGG+AGG | 0.643461 | 5_4:+8225789 | None:intergenic |
| TGAACACAACATGGCCACCA+AGG | 0.646071 | 5_4:-8226251 | Msa0834940:CDS |
| GGAGACGAGCACGGTCGCGG+CGG | 0.650175 | 5_4:+8226157 | None:intergenic |
| AGAAGATGAAGATTCATGGG+AGG | 0.682315 | 5_4:-8226307 | Msa0834940:CDS |
| AGTTGATGATGATGGTGAAG+GGG | 0.689572 | 5_4:+8226371 | None:intergenic |
| TTAGCAACAAGCTCTTGTGG+AGG | 0.690594 | 5_4:+8226078 | None:intergenic |
| GGAATATTATGAACACAACA+TGG | 0.697427 | 5_4:-8226260 | Msa0834940:CDS |
| GGATGAGATGAATTTAACGG+TGG | 0.714956 | 5_4:+8226123 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CAAAAGCATTATTATTATTA+GGG | + | chr5_4:8226190-8226209 | None:intergenic | 15.0% |
| !!! | CAAAAGCATTATTATTATTA+GGG | + | chr5_4:8226190-8226209 | None:intergenic | 15.0% |
| !!! | GCAAAAGCATTATTATTATT+AGG | + | chr5_4:8226191-8226210 | None:intergenic | 20.0% |
| !! | ATTTGCATCATCAAATTATT+TGG | + | chr5_4:8226290-8226309 | None:intergenic | 20.0% |
| !!! | GCAAAAGCATTATTATTATT+AGG | + | chr5_4:8226191-8226210 | None:intergenic | 20.0% |
| !! | ATTTGCATCATCAAATTATT+TGG | + | chr5_4:8226290-8226309 | None:intergenic | 20.0% |
| !! | ATTGTGATTGTGATGATTTT+CGG | + | chr5_4:8225776-8225795 | None:intergenic | 25.0% |
| !! | ATATTTATGAATGGTGATGA+AGG | + | chr5_4:8226110-8226129 | None:intergenic | 25.0% |
| !! | TATTATTAGGGTTTGGTAAA+TGG | + | chr5_4:8226178-8226197 | None:intergenic | 25.0% |
| ! | GCATTATTATTATTAGGGTT+TGG | + | chr5_4:8226185-8226204 | None:intergenic | 25.0% |
| !!! | TCCATCTTTTAATTTTCAAG+TGG | - | chr5_4:8226322-8226341 | Msa0834940:CDS | 25.0% |
| ! | TCCACTTGAAAATTAAAAGA+TGG | + | chr5_4:8226326-8226345 | None:intergenic | 25.0% |
| !! | ATTGTGATTGTGATGATTTT+CGG | + | chr5_4:8225776-8225795 | None:intergenic | 25.0% |
| !! | ATATTTATGAATGGTGATGA+AGG | + | chr5_4:8226110-8226129 | None:intergenic | 25.0% |
| !! | TATTATTAGGGTTTGGTAAA+TGG | + | chr5_4:8226178-8226197 | None:intergenic | 25.0% |
| ! | GCATTATTATTATTAGGGTT+TGG | + | chr5_4:8226185-8226204 | None:intergenic | 25.0% |
| !!! | TCCATCTTTTAATTTTCAAG+TGG | - | chr5_4:8226322-8226341 | Msa0834940:CDS | 25.0% |
| ! | TCCACTTGAAAATTAAAAGA+TGG | + | chr5_4:8226326-8226345 | None:intergenic | 25.0% |
| AACAAGAAGATGAAGATTCA+TGG | - | chr5_4:8225898-8225917 | Msa0834940:CDS | 30.0% | |
| ACAAGAAGATGAAGATTCAT+GGG | - | chr5_4:8225899-8225918 | Msa0834940:CDS | 30.0% | |
| GGAATATTATGAACACAACA+TGG | - | chr5_4:8225949-8225968 | Msa0834940:CDS | 30.0% | |
| GAAGGATGAGATGAATTTAA+CGG | + | chr5_4:8226092-8226111 | None:intergenic | 30.0% | |
| TGTGGAGGAATATTTATGAA+TGG | + | chr5_4:8226119-8226138 | None:intergenic | 30.0% | |
| ATTAGGACTAGAACTATTGT+AGG | + | chr5_4:8226216-8226235 | None:intergenic | 30.0% | |
| !! | TACAATAGTTCTAGTCCTAA+TGG | - | chr5_4:8226215-8226234 | Msa0834940:CDS | 30.0% |
| TGCATCATCAAATTATTTGG+AGG | + | chr5_4:8226287-8226306 | None:intergenic | 30.0% | |
| !! | TTCTTCTTTTTCTAGCAAAG+TGG | - | chr5_4:8226376-8226395 | Msa0834940:CDS | 30.0% |
| AACAAGAAGATGAAGATTCA+TGG | - | chr5_4:8225898-8225917 | Msa0834940:CDS | 30.0% | |
| ACAAGAAGATGAAGATTCAT+GGG | - | chr5_4:8225899-8225918 | Msa0834940:CDS | 30.0% | |
| GGAATATTATGAACACAACA+TGG | - | chr5_4:8225949-8225968 | Msa0834940:CDS | 30.0% | |
| GAAGGATGAGATGAATTTAA+CGG | + | chr5_4:8226092-8226111 | None:intergenic | 30.0% | |
| TGTGGAGGAATATTTATGAA+TGG | + | chr5_4:8226119-8226138 | None:intergenic | 30.0% | |
| ATTAGGACTAGAACTATTGT+AGG | + | chr5_4:8226216-8226235 | None:intergenic | 30.0% | |
| !! | TACAATAGTTCTAGTCCTAA+TGG | - | chr5_4:8226215-8226234 | Msa0834940:CDS | 30.0% |
| TGCATCATCAAATTATTTGG+AGG | + | chr5_4:8226287-8226306 | None:intergenic | 30.0% | |
| !! | TTCTTCTTTTTCTAGCAAAG+TGG | - | chr5_4:8226376-8226395 | Msa0834940:CDS | 30.0% |
| ! | TTTTCGGATCTGAGTCATAT+TGG | + | chr5_4:8225760-8225779 | None:intergenic | 35.0% |
| !! | AAGTTGATGATGATGGTGAA+GGG | + | chr5_4:8225842-8225861 | None:intergenic | 35.0% |
| ! | GGTTTGGTAAATGGTAAAGA+AGG | + | chr5_4:8226169-8226188 | None:intergenic | 35.0% |
| GAGATTGAGAGAAAAGTAGA+AGG | + | chr5_4:8226248-8226267 | None:intergenic | 35.0% | |
| TTCAAGTGGATAATTCAGCT+AGG | - | chr5_4:8226336-8226355 | Msa0834940:CDS | 35.0% | |
| TTCATGACCGTTATCATCAA+TGG | + | chr5_4:8226426-8226445 | None:intergenic | 35.0% | |
| ! | TTTTCGGATCTGAGTCATAT+TGG | + | chr5_4:8225760-8225779 | None:intergenic | 35.0% |
| !! | AAGTTGATGATGATGGTGAA+GGG | + | chr5_4:8225842-8225861 | None:intergenic | 35.0% |
| ! | GGTTTGGTAAATGGTAAAGA+AGG | + | chr5_4:8226169-8226188 | None:intergenic | 35.0% |
| GAGATTGAGAGAAAAGTAGA+AGG | + | chr5_4:8226248-8226267 | None:intergenic | 35.0% | |
| TTCAAGTGGATAATTCAGCT+AGG | - | chr5_4:8226336-8226355 | Msa0834940:CDS | 35.0% | |
| TTCATGACCGTTATCATCAA+TGG | + | chr5_4:8226426-8226445 | None:intergenic | 35.0% | |
| ! | TTGTAGTGGTGTTGGAGTTA+GGG | + | chr5_4:8225818-8225837 | None:intergenic | 40.0% |
| !! | AGTTGATGATGATGGTGAAG+GGG | + | chr5_4:8225841-8225860 | None:intergenic | 40.0% |
| !! | CAAGTTGATGATGATGGTGA+AGG | + | chr5_4:8225843-8225862 | None:intergenic | 40.0% |
| CTTCACCATCATCATCAACT+TGG | - | chr5_4:8225841-8225860 | Msa0834940:CDS | 40.0% | |
| !! | CACATCCAAGTTGATGATGA+TGG | + | chr5_4:8225849-8225868 | None:intergenic | 40.0% |
| CATCATCATCAACTTGGATG+TGG | - | chr5_4:8225847-8225866 | Msa0834940:CDS | 40.0% | |
| !! | GTTGCTGTTGGTGTTGTTTA+GGG | + | chr5_4:8225875-8225894 | None:intergenic | 40.0% |
| !! | TGTTGCTGTTGGTGTTGTTT+AGG | + | chr5_4:8225876-8225895 | None:intergenic | 40.0% |
| CTTCTTGTTCTTGTTGCTGT+TGG | + | chr5_4:8225887-8225906 | None:intergenic | 40.0% | |
| AGAAGATGAAGATTCATGGG+AGG | - | chr5_4:8225902-8225921 | Msa0834940:CDS | 40.0% | |
| ATGAAGATTCATGGGAGGTA+AGG | - | chr5_4:8225907-8225926 | Msa0834940:CDS | 40.0% | |
| TGAAGATTCATGGGAGGTAA+GGG | - | chr5_4:8225908-8225927 | Msa0834940:CDS | 40.0% | |
| AAAGTGCAGGTATAAGACCT+TGG | + | chr5_4:8225978-8225997 | None:intergenic | 40.0% | |
| ! | CTTTTTGCAGAAGAGAGTTC+CGG | - | chr5_4:8225994-8226013 | Msa0834940:CDS | 40.0% |
| GAGATGAATTTAACGGTGGT+TGG | + | chr5_4:8226085-8226104 | None:intergenic | 40.0% | |
| GGATGAGATGAATTTAACGG+TGG | + | chr5_4:8226089-8226108 | None:intergenic | 40.0% | |
| GTAGAAGGAGATTCTCCATT+AGG | + | chr5_4:8226233-8226252 | None:intergenic | 40.0% | |
| ! | TGCACCTCCATTGATGATAA+CGG | - | chr5_4:8226416-8226435 | Msa0834940:CDS | 40.0% |
| ATGACCGTTATCATCAATGG+AGG | + | chr5_4:8226423-8226442 | None:intergenic | 40.0% | |
| TTGATCTTGAGCTCCGTTTA+GGG | - | chr5_4:8226456-8226475 | Msa0834940:CDS | 40.0% | |
| ! | TTGTAGTGGTGTTGGAGTTA+GGG | + | chr5_4:8225818-8225837 | None:intergenic | 40.0% |
| !! | AGTTGATGATGATGGTGAAG+GGG | + | chr5_4:8225841-8225860 | None:intergenic | 40.0% |
| !! | CAAGTTGATGATGATGGTGA+AGG | + | chr5_4:8225843-8225862 | None:intergenic | 40.0% |
| CTTCACCATCATCATCAACT+TGG | - | chr5_4:8225841-8225860 | Msa0834940:CDS | 40.0% | |
| !! | CACATCCAAGTTGATGATGA+TGG | + | chr5_4:8225849-8225868 | None:intergenic | 40.0% |
| CATCATCATCAACTTGGATG+TGG | - | chr5_4:8225847-8225866 | Msa0834940:CDS | 40.0% | |
| !! | GTTGCTGTTGGTGTTGTTTA+GGG | + | chr5_4:8225875-8225894 | None:intergenic | 40.0% |
| !! | TGTTGCTGTTGGTGTTGTTT+AGG | + | chr5_4:8225876-8225895 | None:intergenic | 40.0% |
| CTTCTTGTTCTTGTTGCTGT+TGG | + | chr5_4:8225887-8225906 | None:intergenic | 40.0% | |
| AGAAGATGAAGATTCATGGG+AGG | - | chr5_4:8225902-8225921 | Msa0834940:CDS | 40.0% | |
| ATGAAGATTCATGGGAGGTA+AGG | - | chr5_4:8225907-8225926 | Msa0834940:CDS | 40.0% | |
| TGAAGATTCATGGGAGGTAA+GGG | - | chr5_4:8225908-8225927 | Msa0834940:CDS | 40.0% | |
| AAAGTGCAGGTATAAGACCT+TGG | + | chr5_4:8225978-8225997 | None:intergenic | 40.0% | |
| ! | CTTTTTGCAGAAGAGAGTTC+CGG | - | chr5_4:8225994-8226013 | Msa0834940:CDS | 40.0% |
| GAGATGAATTTAACGGTGGT+TGG | + | chr5_4:8226085-8226104 | None:intergenic | 40.0% | |
| GGATGAGATGAATTTAACGG+TGG | + | chr5_4:8226089-8226108 | None:intergenic | 40.0% | |
| GTAGAAGGAGATTCTCCATT+AGG | + | chr5_4:8226233-8226252 | None:intergenic | 40.0% | |
| ! | TGCACCTCCATTGATGATAA+CGG | - | chr5_4:8226416-8226435 | Msa0834940:CDS | 40.0% |
| ATGACCGTTATCATCAATGG+AGG | + | chr5_4:8226423-8226442 | None:intergenic | 40.0% | |
| TTGATCTTGAGCTCCGTTTA+GGG | - | chr5_4:8226456-8226475 | Msa0834940:CDS | 40.0% | |
| ! | TGTTGGAGTTAGGGTTTGGT+TGG | + | chr5_4:8225809-8225828 | None:intergenic | 45.0% |
| ! | GTTGTAGTGGTGTTGGAGTT+AGG | + | chr5_4:8225819-8225838 | None:intergenic | 45.0% |
| ! | CTCTCTTCTGCAAAAAGTGC+AGG | + | chr5_4:8225991-8226010 | None:intergenic | 45.0% |
| !! | TTAACGGTGGTTGGCTTTGA+TGG | + | chr5_4:8226076-8226095 | None:intergenic | 45.0% |
| TTAGCAACAAGCTCTTGTGG+AGG | + | chr5_4:8226134-8226153 | None:intergenic | 45.0% | |
| GCATTAGCAACAAGCTCTTG+TGG | + | chr5_4:8226137-8226156 | None:intergenic | 45.0% | |
| !! | CAAGAGCTTGTTGCTAATGC+TGG | - | chr5_4:8226137-8226156 | Msa0834940:CDS | 45.0% |
| AGGTGCAAGTAGCATGTTGA+TGG | + | chr5_4:8226403-8226422 | None:intergenic | 45.0% | |
| CTTGATCTTGAGCTCCGTTT+AGG | - | chr5_4:8226455-8226474 | Msa0834940:CDS | 45.0% | |
| !! | GTGTTGGCTTGTTCCCTAAA+CGG | + | chr5_4:8226472-8226491 | None:intergenic | 45.0% |
| ! | TGTTGGAGTTAGGGTTTGGT+TGG | + | chr5_4:8225809-8225828 | None:intergenic | 45.0% |
| ! | GTTGTAGTGGTGTTGGAGTT+AGG | + | chr5_4:8225819-8225838 | None:intergenic | 45.0% |
| ! | CTCTCTTCTGCAAAAAGTGC+AGG | + | chr5_4:8225991-8226010 | None:intergenic | 45.0% |
| !! | TTAACGGTGGTTGGCTTTGA+TGG | + | chr5_4:8226076-8226095 | None:intergenic | 45.0% |
| TTAGCAACAAGCTCTTGTGG+AGG | + | chr5_4:8226134-8226153 | None:intergenic | 45.0% | |
| GCATTAGCAACAAGCTCTTG+TGG | + | chr5_4:8226137-8226156 | None:intergenic | 45.0% | |
| !! | CAAGAGCTTGTTGCTAATGC+TGG | - | chr5_4:8226137-8226156 | Msa0834940:CDS | 45.0% |
| AGGTGCAAGTAGCATGTTGA+TGG | + | chr5_4:8226403-8226422 | None:intergenic | 45.0% | |
| CTTGATCTTGAGCTCCGTTT+AGG | - | chr5_4:8226455-8226474 | Msa0834940:CDS | 45.0% | |
| !! | GTGTTGGCTTGTTCCCTAAA+CGG | + | chr5_4:8226472-8226491 | None:intergenic | 45.0% |
| ! | GTGGTGTTGGAGTTAGGGTT+TGG | + | chr5_4:8225813-8225832 | None:intergenic | 50.0% |
| TGAAGGGGTTGTAGTGGTGT+TGG | + | chr5_4:8225826-8225845 | None:intergenic | 50.0% | |
| ! | TGATGGTGAAGGGGTTGTAG+TGG | + | chr5_4:8225832-8225851 | None:intergenic | 50.0% |
| ! | GGGCTTTTGCTGAAGACACA+AGG | - | chr5_4:8225928-8225947 | Msa0834940:CDS | 50.0% |
| TGAACACAACATGGCCACCA+AGG | - | chr5_4:8225958-8225977 | Msa0834940:CDS | 50.0% | |
| GTGCAGGTATAAGACCTTGG+TGG | + | chr5_4:8225975-8225994 | None:intergenic | 50.0% | |
| ! | GTGGTGTTGGAGTTAGGGTT+TGG | + | chr5_4:8225813-8225832 | None:intergenic | 50.0% |
| TGAAGGGGTTGTAGTGGTGT+TGG | + | chr5_4:8225826-8225845 | None:intergenic | 50.0% | |
| ! | TGATGGTGAAGGGGTTGTAG+TGG | + | chr5_4:8225832-8225851 | None:intergenic | 50.0% |
| ! | GGGCTTTTGCTGAAGACACA+AGG | - | chr5_4:8225928-8225947 | Msa0834940:CDS | 50.0% |
| TGAACACAACATGGCCACCA+AGG | - | chr5_4:8225958-8225977 | Msa0834940:CDS | 50.0% | |
| GTGCAGGTATAAGACCTTGG+TGG | + | chr5_4:8225975-8225994 | None:intergenic | 50.0% | |
| TTCCGGTCAGCTCAAGCTCT+TGG | - | chr5_4:8226011-8226030 | Msa0834940:CDS | 55.0% | |
| CACCAAGAGCTTGAGCTGAC+CGG | + | chr5_4:8226016-8226035 | None:intergenic | 55.0% | |
| ! | GGCTTTGATGGAGACGAGCA+CGG | + | chr5_4:8226064-8226083 | None:intergenic | 55.0% |
| TTCCGGTCAGCTCAAGCTCT+TGG | - | chr5_4:8226011-8226030 | Msa0834940:CDS | 55.0% | |
| CACCAAGAGCTTGAGCTGAC+CGG | + | chr5_4:8226016-8226035 | None:intergenic | 55.0% | |
| ! | GGCTTTGATGGAGACGAGCA+CGG | + | chr5_4:8226064-8226083 | None:intergenic | 55.0% |
| CGGTCAGCTCAAGCTCTTGG+TGG | - | chr5_4:8226014-8226033 | Msa0834940:CDS | 60.0% | |
| CGGTCAGCTCAAGCTCTTGG+TGG | - | chr5_4:8226014-8226033 | Msa0834940:CDS | 60.0% | |
| GATGGAGACGAGCACGGTCG+CGG | + | chr5_4:8226058-8226077 | None:intergenic | 65.0% | |
| GATGGAGACGAGCACGGTCG+CGG | + | chr5_4:8226058-8226077 | None:intergenic | 65.0% | |
| GGAGACGAGCACGGTCGCGG+CGG | + | chr5_4:8226055-8226074 | None:intergenic | 75.0% | |
| GGAGACGAGCACGGTCGCGG+CGG | + | chr5_4:8226055-8226074 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 8225732 | 8226499 | 8225732 | ID=Msa0834940;Name=Msa0834940 |
| chr5_4 | mRNA | 8225732 | 8226499 | 8225732 | ID=Msa0834940-mRNA-1;Parent=Msa0834940;Name=Msa0834940-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|255 |
| chr5_4 | exon | 8225732 | 8226499 | 8225732 | ID=Msa0834940-mRNA-1:exon:3652;Parent=Msa0834940-mRNA-1 |
| chr5_4 | CDS | 8225732 | 8226499 | 8225732 | ID=Msa0834940-mRNA-1:cds;Parent=Msa0834940-mRNA-1 |
| Gene Sequence |
| Protein sequence |
