Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0710880 | ADI60287.1 | 98.824 | 255 | 2 | 1 | 1 | 255 | 1 | 254 | 0.0 | 513 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0710880 | sp|O80942|ZFP10_ARATH | 57.303 | 89 | 26 | 3 | 45 | 129 | 7 | 87 | 4.10e-24 | 101 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0710880 | D7R6G4 | 98.824 | 255 | 2 | 1 | 1 | 255 | 1 | 254 | 0.0 | 513 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0710880 | TF | C2H2 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0710880 | Msa0755650 | 0.908070 | 2.552600e-81 | -8.615850e-47 |
| Msa0710880 | Msa0755690 | 0.890762 | 7.344540e-74 | -8.615850e-47 |
| Msa0710880 | Msa0834940 | 0.844132 | 9.137010e-59 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0710880 | MtrunA17_Chr5g0400571 | 95.294 | 255 | 8 | 2 | 1 | 255 | 1 | 251 | 2.05e-178 | 490 |
| Msa0710880 | MtrunA17_Chr5g0435711 | 36.250 | 240 | 113 | 11 | 38 | 251 | 4 | 229 | 2.15e-27 | 105 |
| Msa0710880 | MtrunA17_Chr4g0009461 | 35.398 | 226 | 95 | 9 | 21 | 215 | 9 | 214 | 5.81e-25 | 100 |
| Msa0710880 | MtrunA17_Chr3g0112181 | 73.684 | 57 | 14 | 1 | 62 | 117 | 33 | 89 | 3.10e-24 | 97.8 |
| Msa0710880 | MtrunA17_Chr2g0315591 | 87.805 | 41 | 5 | 0 | 80 | 120 | 47 | 87 | 8.46e-22 | 90.5 |
| Msa0710880 | MtrunA17_Chr1g0184381 | 80.000 | 40 | 8 | 0 | 78 | 117 | 30 | 69 | 4.94e-18 | 79.3 |
| Msa0710880 | MtrunA17_Chr7g0239441 | 76.471 | 34 | 8 | 0 | 83 | 116 | 37 | 70 | 1.32e-13 | 66.6 |
| Msa0710880 | MtrunA17_Chr4g0032111 | 32.749 | 171 | 85 | 4 | 82 | 252 | 20 | 160 | 2.29e-13 | 66.6 |
| Msa0710880 | MtrunA17_Chr1g0184331 | 45.070 | 71 | 35 | 1 | 83 | 153 | 38 | 104 | 2.28e-12 | 62.8 |
| Msa0710880 | MtrunA17_Chr1g0187231 | 31.551 | 187 | 88 | 9 | 83 | 249 | 18 | 184 | 4.59e-12 | 63.2 |
| Msa0710880 | MtrunA17_Chr1g0168181 | 37.931 | 87 | 36 | 2 | 58 | 135 | 10 | 87 | 9.19e-11 | 58.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0710880 | AT4G17810.1 | 42.982 | 228 | 87 | 9 | 41 | 252 | 3 | 203 | 8.74e-44 | 147 |
| Msa0710880 | AT4G17810.2 | 40.271 | 221 | 73 | 11 | 41 | 252 | 3 | 173 | 8.48e-36 | 125 |
| Msa0710880 | AT2G37740.1 | 57.303 | 89 | 26 | 3 | 45 | 129 | 7 | 87 | 4.17e-25 | 101 |
| Msa0710880 | AT5G06070.1 | 36.493 | 211 | 92 | 8 | 64 | 252 | 32 | 222 | 2.41e-23 | 95.1 |
| Msa0710880 | AT2G42410.2 | 34.667 | 225 | 93 | 8 | 53 | 249 | 14 | 212 | 2.82e-20 | 86.7 |
| Msa0710880 | AT2G42410.1 | 34.667 | 225 | 93 | 8 | 53 | 249 | 14 | 212 | 2.82e-20 | 86.7 |
| Msa0710880 | AT2G42410.3 | 51.685 | 89 | 28 | 2 | 53 | 132 | 40 | 122 | 4.60e-20 | 86.7 |
| Msa0710880 | AT3G23130.1 | 71.429 | 49 | 14 | 0 | 70 | 118 | 32 | 80 | 9.69e-20 | 84.7 |
| Msa0710880 | AT3G09290.1 | 73.529 | 34 | 9 | 0 | 83 | 116 | 33 | 66 | 7.32e-13 | 65.5 |
Find 60 sgRNAs with CRISPR-Local
Find 132 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCAAAAGCATTATTATTATT+AGG | 0.154031 | 5_1:-2718775 | None:intergenic |
| TATTATTAGGGTTTGGTAAA+TGG | 0.178618 | 5_1:-2718762 | None:intergenic |
| ATTTGCATCATCAAATTATT+TGG | 0.195764 | 5_1:-2718874 | None:intergenic |
| GTTGTAGTGGTGTTGGAGTT+AGG | 0.238962 | 5_1:-2718403 | None:intergenic |
| GTTGCTGTTGGTGTTGTTTA+GGG | 0.261033 | 5_1:-2718459 | None:intergenic |
| TGTTGCTGTTGGTGTTGTTT+AGG | 0.267605 | 5_1:-2718460 | None:intergenic |
| CAAAAGCATTATTATTATTA+GGG | 0.268434 | 5_1:-2718774 | None:intergenic |
| TTAACGGTGGTTGGCTTTGA+TGG | 0.294750 | 5_1:-2718660 | None:intergenic |
| CTTGATCTTGAGCTCCGTTT+AGG | 0.296503 | 5_1:+2719042 | Msa0710880:CDS |
| TTGTAGTGGTGTTGGAGTTA+GGG | 0.311379 | 5_1:-2718402 | None:intergenic |
| CTTCTTGTTCTTGTTGCTGT+TGG | 0.353443 | 5_1:-2718471 | None:intergenic |
| TACAATAGTTCTAGTCCTAA+TGG | 0.356996 | 5_1:+2718802 | Msa0710880:CDS |
| TTGATCTTGAGCTCCGTTTA+GGG | 0.364351 | 5_1:+2719043 | Msa0710880:CDS |
| AGTACCATGGCTACAGATAT+TGG | 0.374674 | 5_1:+2718313 | None:intergenic |
| GAGATTGAGAGAAAAGTAGA+AGG | 0.386084 | 5_1:-2718832 | None:intergenic |
| GTAGAAGGAGATTCTCCATT+AGG | 0.392764 | 5_1:-2718817 | None:intergenic |
| TTCATGACCGTTATCATCAA+TGG | 0.401936 | 5_1:-2719010 | None:intergenic |
| GCATTATTATTATTAGGGTT+TGG | 0.403821 | 5_1:-2718769 | None:intergenic |
| TGTTGGAGTTAGGGTTTGGT+TGG | 0.408721 | 5_1:-2718393 | None:intergenic |
| AACAAGAAGATGAAGATTCA+TGG | 0.412727 | 5_1:+2718485 | Msa0710880:CDS |
| CAAGAGCTTGTTGCTAATGC+TGG | 0.417258 | 5_1:+2718724 | Msa0710880:CDS |
| GTGTTGGCTTGTTCCCTAAA+CGG | 0.435644 | 5_1:-2719056 | None:intergenic |
| GTGGTGTTGGAGTTAGGGTT+TGG | 0.437650 | 5_1:-2718397 | None:intergenic |
| TCCACTTGAAAATTAAAAGA+TGG | 0.441538 | 5_1:-2718910 | None:intergenic |
| ATTAGGACTAGAACTATTGT+AGG | 0.449818 | 5_1:-2718800 | None:intergenic |
| ATGAAGATTCATGGGAGGTA+AGG | 0.450992 | 5_1:+2718494 | Msa0710880:CDS |
| TTCCGGTCAGCTCAAGCTCT+TGG | 0.471669 | 5_1:+2718598 | Msa0710880:CDS |
| GAGATGAATTTAACGGTGGT+TGG | 0.484111 | 5_1:-2718669 | None:intergenic |
| TGCATCATCAAATTATTTGG+AGG | 0.491401 | 5_1:-2718871 | None:intergenic |
| GGTTTGGTAAATGGTAAAGA+AGG | 0.506848 | 5_1:-2718753 | None:intergenic |
| CGGTCAGCTCAAGCTCTTGG+TGG | 0.515963 | 5_1:+2718601 | Msa0710880:CDS |
| GATGGAGACGAGCACGGTCG+CGG | 0.516231 | 5_1:-2718642 | None:intergenic |
| ACAAGAAGATGAAGATTCAT+GGG | 0.528846 | 5_1:+2718486 | Msa0710880:CDS |
| TGAAAGGGTTGTAGTGGTGT+TGG | 0.531505 | 5_1:-2718410 | None:intergenic |
| CACCAAGAGCTTGAGCTGAC+CGG | 0.533757 | 5_1:-2718600 | None:intergenic |
| TGAAGATTCATGGGAGGTAA+GGG | 0.539677 | 5_1:+2718495 | Msa0710880:CDS |
| TGTGGAGGAATATTTATGAA+TGG | 0.545539 | 5_1:-2718703 | None:intergenic |
| GAAGGATGAGATGAATTTAA+CGG | 0.547030 | 5_1:-2718676 | None:intergenic |
| TTTCACCATCATCATCAACT+TGG | 0.550115 | 5_1:+2718428 | Msa0710880:CDS |
| AGGTGCAAGTAGCATGTTGA+TGG | 0.551205 | 5_1:-2718987 | None:intergenic |
| CACATCCAAGTTGATGATGA+TGG | 0.567674 | 5_1:-2718433 | None:intergenic |
| TGCACCTCCATTGATGATAA+CGG | 0.570866 | 5_1:+2719003 | Msa0710880:CDS |
| AAAGCCAATATCTGTAGCCA+TGG | 0.572452 | 5_1:-2718317 | None:intergenic |
| GCATTAGCAACAAGCTCTTG+TGG | 0.586992 | 5_1:-2718721 | None:intergenic |
| GGCTTTGATGGAGACGAGCA+CGG | 0.589738 | 5_1:-2718648 | None:intergenic |
| CATCATCATCAACTTGGATG+TGG | 0.591753 | 5_1:+2718434 | Msa0710880:CDS |
| ATATTTATGAATGGTGATGA+AGG | 0.596989 | 5_1:-2718694 | None:intergenic |
| AGTTGATGATGATGGTGAAA+GGG | 0.606024 | 5_1:-2718425 | None:intergenic |
| GTGCAGGTATAGGACCTTGG+TGG | 0.606792 | 5_1:-2718559 | None:intergenic |
| AAAGTGCAGGTATAGGACCT+TGG | 0.620732 | 5_1:-2718562 | None:intergenic |
| AAGTTGATGATGATGGTGAA+AGG | 0.622423 | 5_1:-2718426 | None:intergenic |
| TTCAAGTGGATAATTCAGCT+AGG | 0.628424 | 5_1:+2718923 | Msa0710880:CDS |
| TGATGGTGAAAGGGTTGTAG+TGG | 0.635350 | 5_1:-2718416 | None:intergenic |
| ATGACCGTTATCATCAATGG+AGG | 0.643461 | 5_1:-2719007 | None:intergenic |
| TGAACACAACATGGCCACCA+AGG | 0.646071 | 5_1:+2718545 | Msa0710880:CDS |
| GGAGACGAGCACGGTCGCGG+CGG | 0.650175 | 5_1:-2718639 | None:intergenic |
| AGAAGATGAAGATTCATGGG+AGG | 0.682315 | 5_1:+2718489 | Msa0710880:CDS |
| TTAGCAACAAGCTCTTGTGG+AGG | 0.690594 | 5_1:-2718718 | None:intergenic |
| GGAATATTATGAACACAACA+TGG | 0.697427 | 5_1:+2718536 | Msa0710880:CDS |
| GGATGAGATGAATTTAACGG+TGG | 0.714956 | 5_1:-2718673 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CAAAAGCATTATTATTATTA+GGG | - | chr5_1:2718777-2718796 | None:intergenic | 15.0% |
| !!! | CAAAAGCATTATTATTATTA+GGG | - | chr5_1:2718777-2718796 | None:intergenic | 15.0% |
| !!! | GCAAAAGCATTATTATTATT+AGG | - | chr5_1:2718778-2718797 | None:intergenic | 20.0% |
| !! | ATTTGCATCATCAAATTATT+TGG | - | chr5_1:2718877-2718896 | None:intergenic | 20.0% |
| !!! | GCAAAAGCATTATTATTATT+AGG | - | chr5_1:2718778-2718797 | None:intergenic | 20.0% |
| !! | ATTTGCATCATCAAATTATT+TGG | - | chr5_1:2718877-2718896 | None:intergenic | 20.0% |
| !! | ATTGTGATTGTGATGATTTT+TGG | - | chr5_1:2718363-2718382 | None:intergenic | 25.0% |
| !! | ATATTTATGAATGGTGATGA+AGG | - | chr5_1:2718697-2718716 | None:intergenic | 25.0% |
| !! | TATTATTAGGGTTTGGTAAA+TGG | - | chr5_1:2718765-2718784 | None:intergenic | 25.0% |
| ! | GCATTATTATTATTAGGGTT+TGG | - | chr5_1:2718772-2718791 | None:intergenic | 25.0% |
| !!! | TCCATCTTTTAATTTTCAAG+TGG | + | chr5_1:2718909-2718928 | Msa0710880:CDS | 25.0% |
| ! | TCCACTTGAAAATTAAAAGA+TGG | - | chr5_1:2718913-2718932 | None:intergenic | 25.0% |
| !! | ATTGTGATTGTGATGATTTT+TGG | - | chr5_1:2718363-2718382 | None:intergenic | 25.0% |
| !! | ATATTTATGAATGGTGATGA+AGG | - | chr5_1:2718697-2718716 | None:intergenic | 25.0% |
| !! | TATTATTAGGGTTTGGTAAA+TGG | - | chr5_1:2718765-2718784 | None:intergenic | 25.0% |
| ! | GCATTATTATTATTAGGGTT+TGG | - | chr5_1:2718772-2718791 | None:intergenic | 25.0% |
| !!! | TCCATCTTTTAATTTTCAAG+TGG | + | chr5_1:2718909-2718928 | Msa0710880:CDS | 25.0% |
| ! | TCCACTTGAAAATTAAAAGA+TGG | - | chr5_1:2718913-2718932 | None:intergenic | 25.0% |
| ! | TTTTTGGATCTGAGTCATAT+TGG | - | chr5_1:2718347-2718366 | None:intergenic | 30.0% |
| AACAAGAAGATGAAGATTCA+TGG | + | chr5_1:2718485-2718504 | Msa0710880:CDS | 30.0% | |
| ACAAGAAGATGAAGATTCAT+GGG | + | chr5_1:2718486-2718505 | Msa0710880:CDS | 30.0% | |
| GGAATATTATGAACACAACA+TGG | + | chr5_1:2718536-2718555 | Msa0710880:CDS | 30.0% | |
| GAAGGATGAGATGAATTTAA+CGG | - | chr5_1:2718679-2718698 | None:intergenic | 30.0% | |
| TGTGGAGGAATATTTATGAA+TGG | - | chr5_1:2718706-2718725 | None:intergenic | 30.0% | |
| ATTAGGACTAGAACTATTGT+AGG | - | chr5_1:2718803-2718822 | None:intergenic | 30.0% | |
| !! | TACAATAGTTCTAGTCCTAA+TGG | + | chr5_1:2718802-2718821 | Msa0710880:CDS | 30.0% |
| TGCATCATCAAATTATTTGG+AGG | - | chr5_1:2718874-2718893 | None:intergenic | 30.0% | |
| !! | TTCTTCTTTTTCTAGCAAAG+TGG | + | chr5_1:2718963-2718982 | Msa0710880:CDS | 30.0% |
| ! | TTTTTGGATCTGAGTCATAT+TGG | - | chr5_1:2718347-2718366 | None:intergenic | 30.0% |
| AACAAGAAGATGAAGATTCA+TGG | + | chr5_1:2718485-2718504 | Msa0710880:CDS | 30.0% | |
| ACAAGAAGATGAAGATTCAT+GGG | + | chr5_1:2718486-2718505 | Msa0710880:CDS | 30.0% | |
| GGAATATTATGAACACAACA+TGG | + | chr5_1:2718536-2718555 | Msa0710880:CDS | 30.0% | |
| GAAGGATGAGATGAATTTAA+CGG | - | chr5_1:2718679-2718698 | None:intergenic | 30.0% | |
| TGTGGAGGAATATTTATGAA+TGG | - | chr5_1:2718706-2718725 | None:intergenic | 30.0% | |
| ATTAGGACTAGAACTATTGT+AGG | - | chr5_1:2718803-2718822 | None:intergenic | 30.0% | |
| !! | TACAATAGTTCTAGTCCTAA+TGG | + | chr5_1:2718802-2718821 | Msa0710880:CDS | 30.0% |
| TGCATCATCAAATTATTTGG+AGG | - | chr5_1:2718874-2718893 | None:intergenic | 30.0% | |
| !! | TTCTTCTTTTTCTAGCAAAG+TGG | + | chr5_1:2718963-2718982 | Msa0710880:CDS | 30.0% |
| !! | AGTTGATGATGATGGTGAAA+GGG | - | chr5_1:2718428-2718447 | None:intergenic | 35.0% |
| !! | AAGTTGATGATGATGGTGAA+AGG | - | chr5_1:2718429-2718448 | None:intergenic | 35.0% |
| TTTCACCATCATCATCAACT+TGG | + | chr5_1:2718428-2718447 | Msa0710880:CDS | 35.0% | |
| ! | GGTTTGGTAAATGGTAAAGA+AGG | - | chr5_1:2718756-2718775 | None:intergenic | 35.0% |
| GAGATTGAGAGAAAAGTAGA+AGG | - | chr5_1:2718835-2718854 | None:intergenic | 35.0% | |
| TTCAAGTGGATAATTCAGCT+AGG | + | chr5_1:2718923-2718942 | Msa0710880:CDS | 35.0% | |
| TTCATGACCGTTATCATCAA+TGG | - | chr5_1:2719013-2719032 | None:intergenic | 35.0% | |
| !! | AGTTGATGATGATGGTGAAA+GGG | - | chr5_1:2718428-2718447 | None:intergenic | 35.0% |
| !! | AAGTTGATGATGATGGTGAA+AGG | - | chr5_1:2718429-2718448 | None:intergenic | 35.0% |
| TTTCACCATCATCATCAACT+TGG | + | chr5_1:2718428-2718447 | Msa0710880:CDS | 35.0% | |
| ! | GGTTTGGTAAATGGTAAAGA+AGG | - | chr5_1:2718756-2718775 | None:intergenic | 35.0% |
| GAGATTGAGAGAAAAGTAGA+AGG | - | chr5_1:2718835-2718854 | None:intergenic | 35.0% | |
| TTCAAGTGGATAATTCAGCT+AGG | + | chr5_1:2718923-2718942 | Msa0710880:CDS | 35.0% | |
| TTCATGACCGTTATCATCAA+TGG | - | chr5_1:2719013-2719032 | None:intergenic | 35.0% | |
| ! | TTGTAGTGGTGTTGGAGTTA+GGG | - | chr5_1:2718405-2718424 | None:intergenic | 40.0% |
| !! | CACATCCAAGTTGATGATGA+TGG | - | chr5_1:2718436-2718455 | None:intergenic | 40.0% |
| CATCATCATCAACTTGGATG+TGG | + | chr5_1:2718434-2718453 | Msa0710880:CDS | 40.0% | |
| !! | GTTGCTGTTGGTGTTGTTTA+GGG | - | chr5_1:2718462-2718481 | None:intergenic | 40.0% |
| !! | TGTTGCTGTTGGTGTTGTTT+AGG | - | chr5_1:2718463-2718482 | None:intergenic | 40.0% |
| CTTCTTGTTCTTGTTGCTGT+TGG | - | chr5_1:2718474-2718493 | None:intergenic | 40.0% | |
| AGAAGATGAAGATTCATGGG+AGG | + | chr5_1:2718489-2718508 | Msa0710880:CDS | 40.0% | |
| ATGAAGATTCATGGGAGGTA+AGG | + | chr5_1:2718494-2718513 | Msa0710880:CDS | 40.0% | |
| TGAAGATTCATGGGAGGTAA+GGG | + | chr5_1:2718495-2718514 | Msa0710880:CDS | 40.0% | |
| ! | TCTGCAAAAAGTGCAGGTAT+AGG | - | chr5_1:2718572-2718591 | None:intergenic | 40.0% |
| ! | CTTTTTGCAGAAGAGAGTTC+CGG | + | chr5_1:2718581-2718600 | Msa0710880:CDS | 40.0% |
| GAGATGAATTTAACGGTGGT+TGG | - | chr5_1:2718672-2718691 | None:intergenic | 40.0% | |
| GGATGAGATGAATTTAACGG+TGG | - | chr5_1:2718676-2718695 | None:intergenic | 40.0% | |
| GTAGAAGGAGATTCTCCATT+AGG | - | chr5_1:2718820-2718839 | None:intergenic | 40.0% | |
| ! | TGCACCTCCATTGATGATAA+CGG | + | chr5_1:2719003-2719022 | Msa0710880:CDS | 40.0% |
| ATGACCGTTATCATCAATGG+AGG | - | chr5_1:2719010-2719029 | None:intergenic | 40.0% | |
| TTGATCTTGAGCTCCGTTTA+GGG | + | chr5_1:2719043-2719062 | Msa0710880:CDS | 40.0% | |
| ! | TTGTAGTGGTGTTGGAGTTA+GGG | - | chr5_1:2718405-2718424 | None:intergenic | 40.0% |
| !! | CACATCCAAGTTGATGATGA+TGG | - | chr5_1:2718436-2718455 | None:intergenic | 40.0% |
| CATCATCATCAACTTGGATG+TGG | + | chr5_1:2718434-2718453 | Msa0710880:CDS | 40.0% | |
| !! | GTTGCTGTTGGTGTTGTTTA+GGG | - | chr5_1:2718462-2718481 | None:intergenic | 40.0% |
| !! | TGTTGCTGTTGGTGTTGTTT+AGG | - | chr5_1:2718463-2718482 | None:intergenic | 40.0% |
| CTTCTTGTTCTTGTTGCTGT+TGG | - | chr5_1:2718474-2718493 | None:intergenic | 40.0% | |
| AGAAGATGAAGATTCATGGG+AGG | + | chr5_1:2718489-2718508 | Msa0710880:CDS | 40.0% | |
| ATGAAGATTCATGGGAGGTA+AGG | + | chr5_1:2718494-2718513 | Msa0710880:CDS | 40.0% | |
| TGAAGATTCATGGGAGGTAA+GGG | + | chr5_1:2718495-2718514 | Msa0710880:CDS | 40.0% | |
| ! | TCTGCAAAAAGTGCAGGTAT+AGG | - | chr5_1:2718572-2718591 | None:intergenic | 40.0% |
| ! | CTTTTTGCAGAAGAGAGTTC+CGG | + | chr5_1:2718581-2718600 | Msa0710880:CDS | 40.0% |
| GAGATGAATTTAACGGTGGT+TGG | - | chr5_1:2718672-2718691 | None:intergenic | 40.0% | |
| GGATGAGATGAATTTAACGG+TGG | - | chr5_1:2718676-2718695 | None:intergenic | 40.0% | |
| GTAGAAGGAGATTCTCCATT+AGG | - | chr5_1:2718820-2718839 | None:intergenic | 40.0% | |
| ! | TGCACCTCCATTGATGATAA+CGG | + | chr5_1:2719003-2719022 | Msa0710880:CDS | 40.0% |
| ATGACCGTTATCATCAATGG+AGG | - | chr5_1:2719010-2719029 | None:intergenic | 40.0% | |
| TTGATCTTGAGCTCCGTTTA+GGG | + | chr5_1:2719043-2719062 | Msa0710880:CDS | 40.0% | |
| ! | TGTTGGAGTTAGGGTTTGGT+TGG | - | chr5_1:2718396-2718415 | None:intergenic | 45.0% |
| ! | GTTGTAGTGGTGTTGGAGTT+AGG | - | chr5_1:2718406-2718425 | None:intergenic | 45.0% |
| TGAAAGGGTTGTAGTGGTGT+TGG | - | chr5_1:2718413-2718432 | None:intergenic | 45.0% | |
| ! | TGATGGTGAAAGGGTTGTAG+TGG | - | chr5_1:2718419-2718438 | None:intergenic | 45.0% |
| AAAGTGCAGGTATAGGACCT+TGG | - | chr5_1:2718565-2718584 | None:intergenic | 45.0% | |
| ! | CTCTCTTCTGCAAAAAGTGC+AGG | - | chr5_1:2718578-2718597 | None:intergenic | 45.0% |
| !! | TTAACGGTGGTTGGCTTTGA+TGG | - | chr5_1:2718663-2718682 | None:intergenic | 45.0% |
| TTAGCAACAAGCTCTTGTGG+AGG | - | chr5_1:2718721-2718740 | None:intergenic | 45.0% | |
| GCATTAGCAACAAGCTCTTG+TGG | - | chr5_1:2718724-2718743 | None:intergenic | 45.0% | |
| !! | CAAGAGCTTGTTGCTAATGC+TGG | + | chr5_1:2718724-2718743 | Msa0710880:CDS | 45.0% |
| AGGTGCAAGTAGCATGTTGA+TGG | - | chr5_1:2718990-2719009 | None:intergenic | 45.0% | |
| CTTGATCTTGAGCTCCGTTT+AGG | + | chr5_1:2719042-2719061 | Msa0710880:CDS | 45.0% | |
| !! | GTGTTGGCTTGTTCCCTAAA+CGG | - | chr5_1:2719059-2719078 | None:intergenic | 45.0% |
| ! | TGTTGGAGTTAGGGTTTGGT+TGG | - | chr5_1:2718396-2718415 | None:intergenic | 45.0% |
| ! | GTTGTAGTGGTGTTGGAGTT+AGG | - | chr5_1:2718406-2718425 | None:intergenic | 45.0% |
| TGAAAGGGTTGTAGTGGTGT+TGG | - | chr5_1:2718413-2718432 | None:intergenic | 45.0% | |
| ! | TGATGGTGAAAGGGTTGTAG+TGG | - | chr5_1:2718419-2718438 | None:intergenic | 45.0% |
| AAAGTGCAGGTATAGGACCT+TGG | - | chr5_1:2718565-2718584 | None:intergenic | 45.0% | |
| ! | CTCTCTTCTGCAAAAAGTGC+AGG | - | chr5_1:2718578-2718597 | None:intergenic | 45.0% |
| !! | TTAACGGTGGTTGGCTTTGA+TGG | - | chr5_1:2718663-2718682 | None:intergenic | 45.0% |
| TTAGCAACAAGCTCTTGTGG+AGG | - | chr5_1:2718721-2718740 | None:intergenic | 45.0% | |
| GCATTAGCAACAAGCTCTTG+TGG | - | chr5_1:2718724-2718743 | None:intergenic | 45.0% | |
| !! | CAAGAGCTTGTTGCTAATGC+TGG | + | chr5_1:2718724-2718743 | Msa0710880:CDS | 45.0% |
| AGGTGCAAGTAGCATGTTGA+TGG | - | chr5_1:2718990-2719009 | None:intergenic | 45.0% | |
| CTTGATCTTGAGCTCCGTTT+AGG | + | chr5_1:2719042-2719061 | Msa0710880:CDS | 45.0% | |
| !! | GTGTTGGCTTGTTCCCTAAA+CGG | - | chr5_1:2719059-2719078 | None:intergenic | 45.0% |
| ! | GTGGTGTTGGAGTTAGGGTT+TGG | - | chr5_1:2718400-2718419 | None:intergenic | 50.0% |
| ! | GGGCTTTTGCTGAAGACACA+AGG | + | chr5_1:2718515-2718534 | Msa0710880:CDS | 50.0% |
| TGAACACAACATGGCCACCA+AGG | + | chr5_1:2718545-2718564 | Msa0710880:CDS | 50.0% | |
| ! | GTGGTGTTGGAGTTAGGGTT+TGG | - | chr5_1:2718400-2718419 | None:intergenic | 50.0% |
| ! | GGGCTTTTGCTGAAGACACA+AGG | + | chr5_1:2718515-2718534 | Msa0710880:CDS | 50.0% |
| TGAACACAACATGGCCACCA+AGG | + | chr5_1:2718545-2718564 | Msa0710880:CDS | 50.0% | |
| GTGCAGGTATAGGACCTTGG+TGG | - | chr5_1:2718562-2718581 | None:intergenic | 55.0% | |
| TTCCGGTCAGCTCAAGCTCT+TGG | + | chr5_1:2718598-2718617 | Msa0710880:CDS | 55.0% | |
| CACCAAGAGCTTGAGCTGAC+CGG | - | chr5_1:2718603-2718622 | None:intergenic | 55.0% | |
| ! | GGCTTTGATGGAGACGAGCA+CGG | - | chr5_1:2718651-2718670 | None:intergenic | 55.0% |
| GTGCAGGTATAGGACCTTGG+TGG | - | chr5_1:2718562-2718581 | None:intergenic | 55.0% | |
| TTCCGGTCAGCTCAAGCTCT+TGG | + | chr5_1:2718598-2718617 | Msa0710880:CDS | 55.0% | |
| CACCAAGAGCTTGAGCTGAC+CGG | - | chr5_1:2718603-2718622 | None:intergenic | 55.0% | |
| ! | GGCTTTGATGGAGACGAGCA+CGG | - | chr5_1:2718651-2718670 | None:intergenic | 55.0% |
| CGGTCAGCTCAAGCTCTTGG+TGG | + | chr5_1:2718601-2718620 | Msa0710880:CDS | 60.0% | |
| CGGTCAGCTCAAGCTCTTGG+TGG | + | chr5_1:2718601-2718620 | Msa0710880:CDS | 60.0% | |
| GATGGAGACGAGCACGGTCG+CGG | - | chr5_1:2718645-2718664 | None:intergenic | 65.0% | |
| GATGGAGACGAGCACGGTCG+CGG | - | chr5_1:2718645-2718664 | None:intergenic | 65.0% | |
| GGAGACGAGCACGGTCGCGG+CGG | - | chr5_1:2718642-2718661 | None:intergenic | 75.0% | |
| GGAGACGAGCACGGTCGCGG+CGG | - | chr5_1:2718642-2718661 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 2718319 | 2719086 | 2718319 | ID=Msa0710880;Name=Msa0710880 |
| chr5_1 | mRNA | 2718319 | 2719086 | 2718319 | ID=Msa0710880-mRNA-1;Parent=Msa0710880;Name=Msa0710880-mRNA-1;_AED=0.00;_eAED=0.01;_QI=0|-1|0|1|-1|1|1|0|255 |
| chr5_1 | exon | 2718319 | 2719086 | 2718319 | ID=Msa0710880-mRNA-1:exon:904;Parent=Msa0710880-mRNA-1 |
| chr5_1 | CDS | 2718319 | 2719086 | 2718319 | ID=Msa0710880-mRNA-1:cds;Parent=Msa0710880-mRNA-1 |
| Gene Sequence |
| Protein sequence |
