Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0835410 | XP_039690839.1 | 98.033 | 305 | 6 | 0 | 1 | 305 | 26 | 330 | 0.0 | 617 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0835410 | sp|Q54II8|QSPP_DICDI | 41.824 | 318 | 166 | 6 | 4 | 305 | 7 | 321 | 6.75e-78 | 243 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0835410 | G7K3V0 | 98.033 | 305 | 6 | 0 | 1 | 305 | 1 | 305 | 0.0 | 616 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0756250 | Msa0835410 | 0.837998 | 3.733691e-57 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0835410 | MtrunA17_Chr5g0401381 | 98.033 | 305 | 6 | 0 | 1 | 305 | 1 | 305 | 0.0 | 616 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 81 sgRNAs with CRISPR-Local
Find 264 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGATTTGAATTATGATAATT+TGG | 0.163853 | 5_4:+8745909 | Msa0835410:CDS |
| AGATATTTGCAGCAGATTTA+TGG | 0.178599 | 5_4:+8747021 | Msa0835410:CDS |
| CAGATTTATGGGGTGCATTT+CGG | 0.186692 | 5_4:+8747033 | Msa0835410:CDS |
| AGATTTATGGGGTGCATTTC+GGG | 0.205280 | 5_4:+8747034 | Msa0835410:CDS |
| GTAGATACGTTTGCGTGTTT+TGG | 0.238706 | 5_4:-8743718 | None:intergenic |
| CATGTCGTTGTTGACCCTTC+AGG | 0.247834 | 5_4:+8743928 | Msa0835410:CDS |
| TGTTCAGTACTTGTTTGTTT+TGG | 0.290429 | 5_4:+8744127 | Msa0835410:CDS |
| GATCTTTGGCTTTGGGCAAC+TGG | 0.297869 | 5_4:+8747758 | Msa0835410:CDS |
| AATTATGATAATTTGGCATC+TGG | 0.302437 | 5_4:+8745916 | Msa0835410:CDS |
| TCAGTGTGGAGCTGGATCTT+TGG | 0.305183 | 5_4:+8747744 | Msa0835410:CDS |
| TGGAGCTGGATCTTTGGCTT+TGG | 0.309645 | 5_4:+8747750 | Msa0835410:CDS |
| GGAGCTGGATCTTTGGCTTT+GGG | 0.318143 | 5_4:+8747751 | Msa0835410:CDS |
| AAAGGTGATACCTTAGCTTT+TGG | 0.318612 | 5_4:+8748034 | Msa0835410:three_prime_UTR |
| GATATTTGCAGCAGATTTAT+GGG | 0.335872 | 5_4:+8747022 | Msa0835410:CDS |
| AACAATGTAGTCTGCCATTA+TGG | 0.338975 | 5_4:-8747096 | None:intergenic |
| ATTATTAAGCATATGATATA+TGG | 0.344993 | 5_4:+8747825 | Msa0835410:exon |
| CCAAGCTGCTGAAGCACAGC+TGG | 0.390431 | 5_4:-8747119 | None:intergenic |
| TTGCTAGGTTGGAATTGAAC+TGG | 0.395328 | 5_4:+8746751 | Msa0835410:intron |
| CTTTGGAAGACGAACGCGTT+AGG | 0.409492 | 5_4:+8746583 | Msa0835410:CDS |
| CCAGCTGTGCTTCAGCAGCT+TGG | 0.419904 | 5_4:+8747119 | Msa0835410:CDS |
| GACCGTCTGCAAAAGTATAC+TGG | 0.421036 | 5_4:+8745982 | Msa0835410:CDS |
| TGGGGTGCATTTCGGGGCCA+TGG | 0.425075 | 5_4:+8747041 | Msa0835410:CDS |
| ATTCTATTCCGAAGGTTGAA+TGG | 0.431021 | 5_4:+8744063 | Msa0835410:CDS |
| TTGGCCTAGACCCCTTCCTT+TGG | 0.431477 | 5_4:+8746566 | Msa0835410:CDS |
| TCAGGTGCTCAGTGTGGAGC+TGG | 0.433731 | 5_4:+8747736 | Msa0835410:intron |
| TCAAAATCCCATTCAACCTT+CGG | 0.437178 | 5_4:-8744071 | None:intergenic |
| AATAATATATTGAAAGTGTT+CGG | 0.447093 | 5_4:-8747808 | None:intergenic |
| GCATTTCGGGGCCATGGATA+CGG | 0.449371 | 5_4:+8747047 | Msa0835410:CDS |
| GCCAGTGGAGAAATATGTCC+AGG | 0.449860 | 5_4:+8747182 | Msa0835410:CDS |
| CATCAGCTCTCTGACCATAA+TGG | 0.451433 | 5_4:+8747082 | Msa0835410:CDS |
| AAGGTGAATGACTGTACCTT+TGG | 0.455818 | 5_4:+8747920 | Msa0835410:three_prime_UTR |
| TCTTCCAAAGGAAGGGGTCT+AGG | 0.457275 | 5_4:-8746570 | None:intergenic |
| TTCTATTCCGAAGGTTGAAT+GGG | 0.459281 | 5_4:+8744064 | Msa0835410:CDS |
| ATTATGATAATTTGGCATCT+GGG | 0.462458 | 5_4:+8745917 | Msa0835410:CDS |
| GACGGCCTTTGTACACTGAA+TGG | 0.473528 | 5_4:-8746974 | None:intergenic |
| TAAGGTAACTATCTAAGAAA+AGG | 0.484127 | 5_4:+8747901 | Msa0835410:three_prime_UTR |
| CCCTGGACATATTTCTCCAC+TGG | 0.492184 | 5_4:-8747183 | None:intergenic |
| ACGTTCGAGCTACCTCTGCT+TGG | 0.492230 | 5_4:+8743887 | Msa0835410:CDS |
| TCAACTTCCTCCTCAGTCCC+TGG | 0.495373 | 5_4:-8747200 | None:intergenic |
| CACCATTGATTCTATTCCGA+AGG | 0.499858 | 5_4:+8744055 | Msa0835410:CDS |
| AACCTTCGGAATAGAATCAA+TGG | 0.502139 | 5_4:-8744057 | None:intergenic |
| GAGCTGATAAGCGTAAAATC+AGG | 0.504065 | 5_4:+8747263 | Msa0835410:CDS |
| CGCGTTCGTCTTCCAAAGGA+AGG | 0.504280 | 5_4:-8746578 | None:intergenic |
| TCCACTGGCCTCAATAGTAC+TGG | 0.513718 | 5_4:-8747168 | None:intergenic |
| TAATTTGGCATCTGGGCTAA+AGG | 0.516976 | 5_4:+8745924 | Msa0835410:CDS |
| TACATGCTGTGGAGAAAATG+AGG | 0.519155 | 5_4:+8747240 | Msa0835410:CDS |
| TTCAAAAGCTCACGAAGTTG+TGG | 0.524231 | 5_4:-8746543 | None:intergenic |
| CGTTCGAGCTACCTCTGCTT+GGG | 0.529517 | 5_4:+8743888 | Msa0835410:CDS |
| CTTTAAACTCGCCGTATCCA+TGG | 0.531080 | 5_4:-8747058 | None:intergenic |
| GTTCATTCATCACATTGAAA+CGG | 0.531381 | 5_4:+8743834 | Msa0835410:five_prime_UTR |
| AGGAAAATGACGTGCAACAA+GGG | 0.556066 | 5_4:-8746843 | None:intergenic |
| TCAATAGTACTGGCAAGTGT+TGG | 0.562581 | 5_4:-8747158 | None:intergenic |
| GTCATTTCAGGTGCTCAGTG+TGG | 0.563843 | 5_4:+8747730 | Msa0835410:intron |
| GCAGCATTGTGAAAACTCAA+TGG | 0.572285 | 5_4:+8743861 | Msa0835410:exon |
| TTGAACTGAACCAAAAGCTA+AGG | 0.575521 | 5_4:-8748044 | None:intergenic |
| GCGTTCGTCTTCCAAAGGAA+GGG | 0.581598 | 5_4:-8746577 | None:intergenic |
| AGGTTGGAATTGAACTGGAA+AGG | 0.582837 | 5_4:+8746756 | Msa0835410:intron |
| AACACTTGCCAGTACTATTG+AGG | 0.585591 | 5_4:+8747160 | Msa0835410:CDS |
| CGTTCGTCTTCCAAAGGAAG+GGG | 0.585721 | 5_4:-8746576 | None:intergenic |
| CAGGAAAATGACGTGCAACA+AGG | 0.591199 | 5_4:-8746844 | None:intergenic |
| ACGCGTTAGGTTACTTCATG+AGG | 0.593793 | 5_4:+8746596 | Msa0835410:CDS |
| AACAAGTACTGAACAGTGAG+TGG | 0.598592 | 5_4:-8744119 | None:intergenic |
| AGAAATATGTCCAGGGACTG+AGG | 0.600199 | 5_4:+8747190 | Msa0835410:CDS |
| TCTAATCTTGTTGAGCAATG+TGG | 0.610404 | 5_4:+8746797 | Msa0835410:CDS |
| GATTTATGGGGTGCATTTCG+GGG | 0.613900 | 5_4:+8747035 | Msa0835410:CDS |
| TGCTTGCTCTATACATGCTG+TGG | 0.616690 | 5_4:+8747229 | Msa0835410:CDS |
| GACACAAGTTTGCATCTGCA+CGG | 0.627606 | 5_4:+8747970 | Msa0835410:three_prime_UTR |
| GCCAGTACTATTGAGGCCAG+TGG | 0.629085 | 5_4:+8747167 | Msa0835410:CDS |
| GAATGAAGAATGAACCTGAA+GGG | 0.630480 | 5_4:-8743942 | None:intergenic |
| GTGACTAGCGACCCAAGCAG+AGG | 0.631762 | 5_4:-8743899 | None:intergenic |
| ATATTTGCAGCAGATTTATG+GGG | 0.637528 | 5_4:+8747023 | Msa0835410:CDS |
| ATTACAAAAGCTAATACCAA+AGG | 0.638722 | 5_4:-8747936 | None:intergenic |
| AATATATTGAAAGTGTTCGG+TGG | 0.644057 | 5_4:-8747805 | None:intergenic |
| AGGGTCAACAACGACATGAG+AGG | 0.647077 | 5_4:-8743923 | None:intergenic |
| CTAACGCGTTCGTCTTCCAA+AGG | 0.648925 | 5_4:-8746582 | None:intergenic |
| AAGCGTAAAATCAGGAACAC+CGG | 0.650815 | 5_4:+8747271 | Msa0835410:CDS |
| AGAGACCATTCAGTGTACAA+AGG | 0.651647 | 5_4:+8746969 | Msa0835410:CDS |
| ACATGCTGTGGAGAAAATGA+GGG | 0.657262 | 5_4:+8747241 | Msa0835410:CDS |
| TTTGGCATCTGGGCTAAAGG+CGG | 0.659504 | 5_4:+8745927 | Msa0835410:CDS |
| CCAGTGGAGAAATATGTCCA+GGG | 0.676368 | 5_4:+8747183 | Msa0835410:CDS |
| AATATGTCCAGGGACTGAGG+AGG | 0.705255 | 5_4:+8747193 | Msa0835410:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTATATAAAAATACTTGA+CGG | - | chr5_4:8746995-8747014 | None:intergenic | 10.0% |
| !!! | ATTATTTTCATATAAGCTAA+AGG | + | chr5_4:8744711-8744730 | Msa0835410:intron | 15.0% |
| !!! | TTTTTCAAAAGTAATTGATT+TGG | + | chr5_4:8745023-8745042 | Msa0835410:intron | 15.0% |
| !! | AGAAATAATCATATATCATA+TGG | + | chr5_4:8745565-8745584 | Msa0835410:intron | 15.0% |
| !!! | AATAATATATTGAAAGTGTT+CGG | - | chr5_4:8747811-8747830 | None:intergenic | 15.0% |
| !! | ATTATTAAGCATATGATATA+TGG | + | chr5_4:8747825-8747844 | Msa0835410:exon | 15.0% |
| !!! | TTCAATTTATCTGCATATTT+TGG | + | chr5_4:8744459-8744478 | Msa0835410:intron | 20.0% |
| !! | ACATAATGTGAATATGAAAA+TGG | + | chr5_4:8744948-8744967 | Msa0835410:intron | 20.0% |
| !!! | ACATTTTGTAAACTACATTT+TGG | + | chr5_4:8745046-8745065 | Msa0835410:intron | 20.0% |
| !! | ATATTAATAAAGCAATACAC+AGG | - | chr5_4:8745074-8745093 | None:intergenic | 20.0% |
| !! | CAACTCTTTGTATTAAATTA+AGG | + | chr5_4:8745243-8745262 | Msa0835410:intron | 20.0% |
| !! | TTTGTATTAAATTAAGGCAT+CGG | + | chr5_4:8745249-8745268 | Msa0835410:intron | 20.0% |
| !! | TCAACAAATGAAAGAAAATA+AGG | - | chr5_4:8745543-8745562 | None:intergenic | 20.0% |
| !!! | TTGTTGGTTTTTATTCTTTT+TGG | + | chr5_4:8745593-8745612 | Msa0835410:intron | 20.0% |
| !! | AGTTGACAAATATATGAAAT+AGG | + | chr5_4:8745765-8745784 | Msa0835410:intron | 20.0% |
| !! | ACAAATATATGAAATAGGAT+TGG | + | chr5_4:8745770-8745789 | Msa0835410:intron | 20.0% |
| !! | GGATTTGAATTATGATAATT+TGG | + | chr5_4:8745909-8745928 | Msa0835410:CDS | 20.0% |
| !!! | GTATTTTCAAAAAGATGTAT+TGG | + | chr5_4:8746420-8746439 | Msa0835410:intron | 20.0% |
| !! | CAAATTCAATTCATAATGTT+AGG | + | chr5_4:8746519-8746538 | Msa0835410:intron | 20.0% |
| !!! | AGCTTTTGTAATTTTGAAAA+TGG | + | chr5_4:8747947-8747966 | Msa0835410:three_prime_UTR | 20.0% |
| !!! | GCTTTTGTAATTTTGAAAAT+GGG | + | chr5_4:8747948-8747967 | Msa0835410:three_prime_UTR | 20.0% |
| !! | TTCGAAAAAATTTCTACAAA+AGG | + | chr5_4:8748016-8748035 | Msa0835410:three_prime_UTR | 20.0% |
| !!! | TGATTATGCGATTTTTTTCA+GGG | + | chr5_4:8744015-8744034 | Msa0835410:intron | 25.0% |
| !!! | GGGATTCATTATTTTGATAA+TGG | + | chr5_4:8744095-8744114 | Msa0835410:CDS | 25.0% |
| !! | TTTCTTTCAAGTGTAATGTA+TGG | + | chr5_4:8744377-8744396 | Msa0835410:intron | 25.0% |
| ! | GATAAATATGCAAAAAACAG+GGG | - | chr5_4:8744413-8744432 | None:intergenic | 25.0% |
| ! | CGATAAATATGCAAAAAACA+GGG | - | chr5_4:8744414-8744433 | None:intergenic | 25.0% |
| ! | ACGATAAATATGCAAAAAAC+AGG | - | chr5_4:8744415-8744434 | None:intergenic | 25.0% |
| ! | GAATTCATTGCATAATAACA+AGG | - | chr5_4:8744494-8744513 | None:intergenic | 25.0% |
| ! | TGTGATTAAGTTAATATACC+TGG | + | chr5_4:8744909-8744928 | Msa0835410:intron | 25.0% |
| ! | GAAAAATAACATCACAGATA+TGG | - | chr5_4:8745009-8745028 | None:intergenic | 25.0% |
| ! | AAGATGAATATGTTTGAAAG+CGG | - | chr5_4:8745142-8745161 | None:intergenic | 25.0% |
| ! | ATATCATATGGAACTATTGT+TGG | + | chr5_4:8745577-8745596 | Msa0835410:intron | 25.0% |
| !! | AATCTTTTCTCGTTATGTAA+AGG | - | chr5_4:8745668-8745687 | None:intergenic | 25.0% |
| ! | AAGATTATGATAGTTGTTGT+TGG | + | chr5_4:8745682-8745701 | Msa0835410:intron | 25.0% |
| !! | AGATTATGATAGTTGTTGTT+GGG | + | chr5_4:8745683-8745702 | Msa0835410:intron | 25.0% |
| ! | AATTATGATAATTTGGCATC+TGG | + | chr5_4:8745916-8745935 | Msa0835410:CDS | 25.0% |
| ! | ATTATGATAATTTGGCATCT+GGG | + | chr5_4:8745917-8745936 | Msa0835410:CDS | 25.0% |
| ! | AAAACATGAACTGTATTGAA+GGG | - | chr5_4:8746100-8746119 | None:intergenic | 25.0% |
| ! | AAAAACATGAACTGTATTGA+AGG | - | chr5_4:8746101-8746120 | None:intergenic | 25.0% |
| !! | ATCTAATCTTTTTCTTCAAG+TGG | + | chr5_4:8746395-8746414 | Msa0835410:intron | 25.0% |
| ! | AAGACAAGAAAAGAAGAAAA+TGG | - | chr5_4:8746875-8746894 | None:intergenic | 25.0% |
| ! | TTCCTTGTATGACAATTAAA+GGG | - | chr5_4:8747418-8747437 | None:intergenic | 25.0% |
| ! | ATTCCTTGTATGACAATTAA+AGG | - | chr5_4:8747419-8747438 | None:intergenic | 25.0% |
| ! | CATGTAAAAATTGTATGAAG+TGG | + | chr5_4:8747522-8747541 | Msa0835410:intron | 25.0% |
| !! | ATATGGTATTATGTCATTTC+AGG | + | chr5_4:8747718-8747737 | Msa0835410:intron | 25.0% |
| !! | TAGAACAAGAAAATTTTGTC+TGG | + | chr5_4:8747876-8747895 | Msa0835410:three_prime_UTR | 25.0% |
| !!! | AGAAAATTTTGTCTGGTTTA+AGG | + | chr5_4:8747883-8747902 | Msa0835410:three_prime_UTR | 25.0% |
| ! | TAAGGTAACTATCTAAGAAA+AGG | + | chr5_4:8747901-8747920 | Msa0835410:three_prime_UTR | 25.0% |
| ! | ATTACAAAAGCTAATACCAA+AGG | - | chr5_4:8747939-8747958 | None:intergenic | 25.0% |
| ! | CAAAGCTTTATGGAAAAAAC+TGG | - | chr5_4:8743805-8743824 | None:intergenic | 30.0% |
| !!! | CAGTTTTTTCCATAAAGCTT+TGG | + | chr5_4:8743803-8743822 | Msa0835410:five_prime_UTR | 30.0% |
| !!! | TCCATAAAGCTTTGGTTTTT+AGG | + | chr5_4:8743811-8743830 | Msa0835410:five_prime_UTR | 30.0% |
| !!! | CCATAAAGCTTTGGTTTTTA+GGG | + | chr5_4:8743812-8743831 | Msa0835410:five_prime_UTR | 30.0% |
| GTTCATTCATCACATTGAAA+CGG | + | chr5_4:8743834-8743853 | Msa0835410:five_prime_UTR | 30.0% | |
| !!! | GTGATTATGCGATTTTTTTC+AGG | + | chr5_4:8744014-8744033 | Msa0835410:intron | 30.0% |
| ! | TGTTCAGTACTTGTTTGTTT+TGG | + | chr5_4:8744127-8744146 | Msa0835410:CDS | 30.0% |
| AAAATTACTACATACGTACC+AGG | - | chr5_4:8744176-8744195 | None:intergenic | 30.0% | |
| TCATATGTTCATGTCATTGT+TGG | + | chr5_4:8744292-8744311 | Msa0835410:intron | 30.0% | |
| TGCAATGAATTCATGTTGAT+TGG | + | chr5_4:8744502-8744521 | Msa0835410:intron | 30.0% | |
| ! | TGAATTCATGTTGATTGGTT+TGG | + | chr5_4:8744507-8744526 | Msa0835410:intron | 30.0% |
| GTGTACCTATAACTAGAAAA+AGG | + | chr5_4:8744531-8744550 | Msa0835410:intron | 30.0% | |
| AATTCTAGTATAGACATGCT+TGG | + | chr5_4:8744589-8744608 | Msa0835410:intron | 30.0% | |
| !! | CTTATTTTCACAAGCTTTTC+AGG | - | chr5_4:8744754-8744773 | None:intergenic | 30.0% |
| ! | AATAAGTTGAAAGTTGTTCG+TGG | + | chr5_4:8744768-8744787 | Msa0835410:intron | 30.0% |
| AAACACTTGTGAGATTATGT+CGG | - | chr5_4:8744823-8744842 | None:intergenic | 30.0% | |
| TACCAAAAAAGTTCTTGCAA+GGG | - | chr5_4:8744885-8744904 | None:intergenic | 30.0% | |
| ATACCAAAAAAGTTCTTGCA+AGG | - | chr5_4:8744886-8744905 | None:intergenic | 30.0% | |
| TATTCAAGAGGTTGCAAATT+TGG | + | chr5_4:8744979-8744998 | Msa0835410:intron | 30.0% | |
| AATATTGTGTGACTAATTGC+TGG | + | chr5_4:8745089-8745108 | Msa0835410:intron | 30.0% | |
| TAGCATTTGTCAATAAAGGA+AGG | - | chr5_4:8745119-8745138 | None:intergenic | 30.0% | |
| TTCAAACATATTCATCTTCC+TGG | + | chr5_4:8745144-8745163 | Msa0835410:intron | 30.0% | |
| AACTGTCAAAAACTACCAAA+AGG | - | chr5_4:8745404-8745423 | None:intergenic | 30.0% | |
| !!! | TATTCTTTTTGGTGTTGAGT+TGG | + | chr5_4:8745604-8745623 | Msa0835410:intron | 30.0% |
| GTAAAATATCTCCTAGTCAT+AGG | + | chr5_4:8745792-8745811 | Msa0835410:intron | 30.0% | |
| TATGCTAAAATCCTATGACT+AGG | - | chr5_4:8745806-8745825 | None:intergenic | 30.0% | |
| ! | TTCTTGTTTCACAACAGATA+AGG | + | chr5_4:8745888-8745907 | Msa0835410:intron | 30.0% |
| TTACATCTTCATGCATAGAT+TGG | + | chr5_4:8746042-8746061 | Msa0835410:intron | 30.0% | |
| AAACATGAACTGTATTGAAG+GGG | - | chr5_4:8746099-8746118 | None:intergenic | 30.0% | |
| ! | TGATATTTGAGACTACAGTT+TGG | + | chr5_4:8746130-8746149 | Msa0835410:intron | 30.0% |
| AGTTTGGTAGGAATATTCAA+GGG | + | chr5_4:8746146-8746165 | Msa0835410:intron | 30.0% | |
| TACAGTTACATATCACTTAG+TGG | + | chr5_4:8746212-8746231 | Msa0835410:intron | 30.0% | |
| AAAACTATTGCGTTCAAACT+GGG | - | chr5_4:8746296-8746315 | None:intergenic | 30.0% | |
| TACATATTTGATTGCCTCAA+GGG | + | chr5_4:8746322-8746341 | Msa0835410:intron | 30.0% | |
| TTGCATATAACTGTGACTAA+AGG | - | chr5_4:8746649-8746668 | None:intergenic | 30.0% | |
| AGATATTTGCAGCAGATTTA+TGG | + | chr5_4:8747021-8747040 | Msa0835410:CDS | 30.0% | |
| GATATTTGCAGCAGATTTAT+GGG | + | chr5_4:8747022-8747041 | Msa0835410:CDS | 30.0% | |
| ATATTTGCAGCAGATTTATG+GGG | + | chr5_4:8747023-8747042 | Msa0835410:CDS | 30.0% | |
| AAAAGTAAACGACAATTGAC+TGG | + | chr5_4:8747387-8747406 | Msa0835410:intron | 30.0% | |
| TTCCCTTTAATTGTCATACA+AGG | + | chr5_4:8747413-8747432 | Msa0835410:intron | 30.0% | |
| CGTGTAAAAATTGTATGAAG+TGG | + | chr5_4:8747496-8747515 | Msa0835410:intron | 30.0% | |
| !!! | TGGTGACATATTTTAGAGTT+TGG | + | chr5_4:8747542-8747561 | Msa0835410:intron | 30.0% |
| CCATATTTAAGTCAGAAAGA+TGG | - | chr5_4:8747704-8747723 | None:intergenic | 30.0% | |
| CCATCTTTCTGACTTAAATA+TGG | + | chr5_4:8747701-8747720 | Msa0835410:intron | 30.0% | |
| !! | AATATATTGAAAGTGTTCGG+TGG | - | chr5_4:8747808-8747827 | None:intergenic | 30.0% |
| ! | TAGATACGTTTGCGTGTTTT+GGG | - | chr5_4:8743720-8743739 | None:intergenic | 35.0% |
| CCCTAAAAACCAAAGCTTTA+TGG | - | chr5_4:8743815-8743834 | None:intergenic | 35.0% | |
| GAATGAAGAATGAACCTGAA+GGG | - | chr5_4:8743945-8743964 | None:intergenic | 35.0% | |
| TGAAAAAGATACAGCGTTAG+TGG | - | chr5_4:8743967-8743986 | None:intergenic | 35.0% | |
| AACCTTCGGAATAGAATCAA+TGG | - | chr5_4:8744060-8744079 | None:intergenic | 35.0% | |
| ATTCTATTCCGAAGGTTGAA+TGG | + | chr5_4:8744063-8744082 | Msa0835410:CDS | 35.0% | |
| TTCTATTCCGAAGGTTGAAT+GGG | + | chr5_4:8744064-8744083 | Msa0835410:CDS | 35.0% | |
| TCAAAATCCCATTCAACCTT+CGG | - | chr5_4:8744074-8744093 | None:intergenic | 35.0% | |
| ! | AAGGTTGAATGGGATTTTGA+AGG | + | chr5_4:8744074-8744093 | Msa0835410:CDS | 35.0% |
| ! | AGGTTGAATGGGATTTTGAA+GGG | + | chr5_4:8744075-8744094 | Msa0835410:CDS | 35.0% |
| !! | ATGCTTTGAACTTTTGCTTC+TGG | + | chr5_4:8744150-8744169 | Msa0835410:CDS | 35.0% |
| ! | AGTGTAATGTATGGTGTTGA+TGG | + | chr5_4:8744386-8744405 | Msa0835410:intron | 35.0% |
| !!! | CGTCTCCTTTTTCTAGTTAT+AGG | - | chr5_4:8744539-8744558 | None:intergenic | 35.0% |
| ! | CTTTTCTCGTTACAAGAGTT+TGG | + | chr5_4:8744560-8744579 | Msa0835410:intron | 35.0% |
| ATGGTCTGTGAATATTCAAG+AGG | + | chr5_4:8744967-8744986 | Msa0835410:intron | 35.0% | |
| ! | GATCGTTGATTAAAAATGCC+AGG | - | chr5_4:8745165-8745184 | None:intergenic | 35.0% |
| TAGTACAGAACAGAATCAAC+TGG | + | chr5_4:8745433-8745452 | Msa0835410:intron | 35.0% | |
| ! | CTTCTCTCTGTTCGATTTTA+AGG | + | chr5_4:8745496-8745515 | Msa0835410:intron | 35.0% |
| !! | TGTTCGATTTTAAGGAGACT+AGG | + | chr5_4:8745504-8745523 | Msa0835410:intron | 35.0% |
| GTTATGTAAAGGCTACTATG+TGG | - | chr5_4:8745657-8745676 | None:intergenic | 35.0% | |
| ! | GTGTTATTAGGATGATTAGC+CGG | + | chr5_4:8745720-8745739 | Msa0835410:intron | 35.0% |
| ATGTCAACTAAACAACTGAC+CGG | - | chr5_4:8745742-8745761 | None:intergenic | 35.0% | |
| ! | TTAGCATATCTTTTTCCCTC+TGG | + | chr5_4:8745818-8745837 | Msa0835410:intron | 35.0% |
| AAAGAACAGAAATAATGCCG+AGG | - | chr5_4:8745851-8745870 | None:intergenic | 35.0% | |
| ! | TACCAGTATACTTTTGCAGA+CGG | - | chr5_4:8745987-8746006 | None:intergenic | 35.0% |
| AGTATACTGGTAATTCTGCT+TGG | + | chr5_4:8745995-8746014 | Msa0835410:intron | 35.0% | |
| GAAGATGTAAGTTTGCATAC+AGG | - | chr5_4:8746032-8746051 | None:intergenic | 35.0% | |
| ! | TCTTCATGCATAGATTGGTT+TGG | + | chr5_4:8746047-8746066 | Msa0835410:intron | 35.0% |
| ! | ATTTGAGACTACAGTTTGGT+AGG | + | chr5_4:8746134-8746153 | Msa0835410:intron | 35.0% |
| CAGTTTGGTAGGAATATTCA+AGG | + | chr5_4:8746145-8746164 | Msa0835410:intron | 35.0% | |
| CAAAACTATTGCGTTCAAAC+TGG | - | chr5_4:8746297-8746316 | None:intergenic | 35.0% | |
| GTACATATTTGATTGCCTCA+AGG | + | chr5_4:8746321-8746340 | Msa0835410:intron | 35.0% | |
| ! | AACTTCGTGAGCTTTTGAAT+TGG | + | chr5_4:8746547-8746566 | Msa0835410:CDS | 35.0% |
| TACCATTCACTTCTATTGCT+AGG | + | chr5_4:8746736-8746755 | Msa0835410:intron | 35.0% | |
| AACCTAGCAATAGAAGTGAA+TGG | - | chr5_4:8746741-8746760 | None:intergenic | 35.0% | |
| ATTCACTTCTATTGCTAGGT+TGG | + | chr5_4:8746740-8746759 | Msa0835410:intron | 35.0% | |
| ! | GAACTGGAAAGGAATTTTGA+CGG | + | chr5_4:8746767-8746786 | Msa0835410:CDS | 35.0% |
| TCTAATCTTGTTGAGCAATG+TGG | + | chr5_4:8746797-8746816 | Msa0835410:CDS | 35.0% | |
| AAAGAAGAAAATGGTCTACC+AGG | - | chr5_4:8746866-8746885 | None:intergenic | 35.0% | |
| CCTAGAACATTTCATAGCAA+GGG | - | chr5_4:8746945-8746964 | None:intergenic | 35.0% | |
| AACAATGTAGTCTGCCATTA+TGG | - | chr5_4:8747099-8747118 | None:intergenic | 35.0% | |
| AATCAGAGAAAAGAACTCAC+CGG | - | chr5_4:8747293-8747312 | None:intergenic | 35.0% | |
| AGAACTCTATACATTGAGCA+CGG | - | chr5_4:8747337-8747356 | None:intergenic | 35.0% | |
| CATACAAGGAATCATTTCCT+CGG | + | chr5_4:8747427-8747446 | Msa0835410:intron | 35.0% | |
| !! | GAGTTTGGTAATGTATCAGT+AGG | + | chr5_4:8747557-8747576 | Msa0835410:intron | 35.0% |
| !! | TTTTTCAGTTTCAGGCAAGA+GGG | - | chr5_4:8747628-8747647 | None:intergenic | 35.0% |
| !! | ATTTTTCAGTTTCAGGCAAG+AGG | - | chr5_4:8747629-8747648 | None:intergenic | 35.0% |
| ATAAGTGAAGTGAAGAGTGA+TGG | - | chr5_4:8747657-8747676 | None:intergenic | 35.0% | |
| !! | AAAGGTGATACCTTAGCTTT+TGG | + | chr5_4:8748034-8748053 | Msa0835410:three_prime_UTR | 35.0% |
| ! | GTAGATACGTTTGCGTGTTT+TGG | - | chr5_4:8743721-8743740 | None:intergenic | 40.0% |
| !! | CGTTTTGTTCTTAGTTTCGC+GGG | - | chr5_4:8743765-8743784 | None:intergenic | 40.0% |
| !! | GCGTTTTGTTCTTAGTTTCG+CGG | - | chr5_4:8743766-8743785 | None:intergenic | 40.0% |
| GCAGCATTGTGAAAACTCAA+TGG | + | chr5_4:8743861-8743880 | Msa0835410:exon | 40.0% | |
| GGAATGAAGAATGAACCTGA+AGG | - | chr5_4:8743946-8743965 | None:intergenic | 40.0% | |
| !! | CACCATTGATTCTATTCCGA+AGG | + | chr5_4:8744055-8744074 | Msa0835410:CDS | 40.0% |
| !! | AACAAGTACTGAACAGTGAG+TGG | - | chr5_4:8744122-8744141 | None:intergenic | 40.0% |
| AGAAGACGTGTTTCACATGT+CGG | - | chr5_4:8744330-8744349 | None:intergenic | 40.0% | |
| AGATTATGTCGGAGAGCTTA+TGG | - | chr5_4:8744812-8744831 | None:intergenic | 40.0% | |
| !! | TTGCAAGGGCTAGTTTGAAT+TGG | - | chr5_4:8744871-8744890 | None:intergenic | 40.0% |
| !!! | AGCCCTTGCAAGAACTTTTT+TGG | + | chr5_4:8744880-8744899 | Msa0835410:intron | 40.0% |
| GCGGTAGCATTTGTCAATAA+AGG | - | chr5_4:8745123-8745142 | None:intergenic | 40.0% | |
| GCAGTGTATACGCAATTGTA+TGG | - | chr5_4:8745305-8745324 | None:intergenic | 40.0% | |
| TTGTGTGTCTAGCACAGTAA+GGG | - | chr5_4:8745327-8745346 | None:intergenic | 40.0% | |
| TTTGTGTGTCTAGCACAGTA+AGG | - | chr5_4:8745328-8745347 | None:intergenic | 40.0% | |
| ! | GTTCTTGACAACACACCTTT+TGG | + | chr5_4:8745386-8745405 | Msa0835410:intron | 40.0% |
| TACAGAACAGAATCAACTGG+AGG | + | chr5_4:8745436-8745455 | Msa0835410:intron | 40.0% | |
| GGAGGTAAGAAATTGTGCTT+AGG | + | chr5_4:8745454-8745473 | Msa0835410:intron | 40.0% | |
| !! | TCGATTTTAAGGAGACTAGG+TGG | + | chr5_4:8745507-8745526 | Msa0835410:intron | 40.0% |
| GAGTTGGAGTTTGAACACAA+TGG | + | chr5_4:8745620-8745639 | Msa0835410:intron | 40.0% | |
| ! | ATGATAGTTGTTGTTGGGTG+TGG | + | chr5_4:8745688-8745707 | Msa0835410:intron | 40.0% |
| TAATTTGGCATCTGGGCTAA+AGG | + | chr5_4:8745924-8745943 | Msa0835410:CDS | 40.0% | |
| GTTTGCATACAGGAAATGCA+AGG | - | chr5_4:8746022-8746041 | None:intergenic | 40.0% | |
| TGGTAGGAATATTCAAGGGT+AGG | + | chr5_4:8746150-8746169 | Msa0835410:intron | 40.0% | |
| TCACTTAGTGGTACGTAATC+AGG | + | chr5_4:8746224-8746243 | Msa0835410:intron | 40.0% | |
| ACACTGTAAACCTGCATTCA+TGG | + | chr5_4:8746266-8746285 | Msa0835410:intron | 40.0% | |
| GAGCAATTACAAATCGACTG+TGG | - | chr5_4:8746360-8746379 | None:intergenic | 40.0% | |
| TTGGCATCTCTGTTTACATC+AGG | + | chr5_4:8746439-8746458 | Msa0835410:intron | 40.0% | |
| TTCAAAAGCTCACGAAGTTG+TGG | - | chr5_4:8746546-8746565 | None:intergenic | 40.0% | |
| ! | TTGCTAGGTTGGAATTGAAC+TGG | + | chr5_4:8746751-8746770 | Msa0835410:intron | 40.0% |
| AGGTTGGAATTGAACTGGAA+AGG | + | chr5_4:8746756-8746775 | Msa0835410:intron | 40.0% | |
| AGGAAAATGACGTGCAACAA+GGG | - | chr5_4:8746846-8746865 | None:intergenic | 40.0% | |
| CAAGGGTCAGTGAAACAAAT+TGG | - | chr5_4:8746928-8746947 | None:intergenic | 40.0% | |
| ! | CCCTTGCTATGAAATGTTCT+AGG | + | chr5_4:8746942-8746961 | Msa0835410:intron | 40.0% |
| GCCTAGAACATTTCATAGCA+AGG | - | chr5_4:8746946-8746965 | None:intergenic | 40.0% | |
| AGAGACCATTCAGTGTACAA+AGG | + | chr5_4:8746969-8746988 | Msa0835410:CDS | 40.0% | |
| CAGATTTATGGGGTGCATTT+CGG | + | chr5_4:8747033-8747052 | Msa0835410:CDS | 40.0% | |
| AGATTTATGGGGTGCATTTC+GGG | + | chr5_4:8747034-8747053 | Msa0835410:CDS | 40.0% | |
| !! | TCAATAGTACTGGCAAGTGT+TGG | - | chr5_4:8747161-8747180 | None:intergenic | 40.0% |
| AACACTTGCCAGTACTATTG+AGG | + | chr5_4:8747160-8747179 | Msa0835410:CDS | 40.0% | |
| TACATGCTGTGGAGAAAATG+AGG | + | chr5_4:8747240-8747259 | Msa0835410:CDS | 40.0% | |
| ACATGCTGTGGAGAAAATGA+GGG | + | chr5_4:8747241-8747260 | Msa0835410:CDS | 40.0% | |
| GAGCTGATAAGCGTAAAATC+AGG | + | chr5_4:8747263-8747282 | Msa0835410:CDS | 40.0% | |
| AAGCGTAAAATCAGGAACAC+CGG | + | chr5_4:8747271-8747290 | Msa0835410:CDS | 40.0% | |
| AACTCTATACATTGAGCACG+GGG | - | chr5_4:8747335-8747354 | None:intergenic | 40.0% | |
| GAACTCTATACATTGAGCAC+GGG | - | chr5_4:8747336-8747355 | None:intergenic | 40.0% | |
| TTTCCTCGGACATTCATTTC+TGG | + | chr5_4:8747441-8747460 | Msa0835410:intron | 40.0% | |
| ! | TTTTCAGTTTCAGGCAAGAG+GGG | - | chr5_4:8747627-8747646 | None:intergenic | 40.0% |
| !! | GGCAACGATTTTTCAGTTTC+AGG | - | chr5_4:8747636-8747655 | None:intergenic | 40.0% |
| AAGGTGAATGACTGTACCTT+TGG | + | chr5_4:8747920-8747939 | Msa0835410:three_prime_UTR | 40.0% | |
| ! | GTTTTCATGCTGAACGTGAG+GGG | - | chr5_4:8743743-8743762 | None:intergenic | 45.0% |
| ! | GGTTTTCATGCTGAACGTGA+GGG | - | chr5_4:8743744-8743763 | None:intergenic | 45.0% |
| ! | TTGAACTTTTGCTTCTGGCC+TGG | + | chr5_4:8744155-8744174 | Msa0835410:CDS | 45.0% |
| AAGCAGTCACATACGAACAC+CGG | + | chr5_4:8744221-8744240 | Msa0835410:intron | 45.0% | |
| ! | ACTTTTACCAGTGTCGTGTC+CGG | - | chr5_4:8744243-8744262 | None:intergenic | 45.0% |
| !! | GTTTCACATGTCGGTGTTGT+TGG | - | chr5_4:8744321-8744340 | None:intergenic | 45.0% |
| ATACCTGGAGAACGTGTTGT+TGG | + | chr5_4:8744924-8744943 | Msa0835410:intron | 45.0% | |
| !! | TGGTGCTCTAGGGTGTTATT+AGG | + | chr5_4:8745708-8745727 | Msa0835410:intron | 45.0% |
| TTCCCTCTGGCTATTAACCT+CGG | + | chr5_4:8745831-8745850 | Msa0835410:intron | 45.0% | |
| ! | GACCGTCTGCAAAAGTATAC+TGG | + | chr5_4:8745982-8746001 | Msa0835410:CDS | 45.0% |
| TCTGTTTACATCAGGCCTTG+TGG | + | chr5_4:8746447-8746466 | Msa0835410:intron | 45.0% | |
| AAGCAAGCAAATCCACCACA+AGG | - | chr5_4:8746465-8746484 | None:intergenic | 45.0% | |
| ACGCGTTAGGTTACTTCATG+AGG | + | chr5_4:8746596-8746615 | Msa0835410:CDS | 45.0% | |
| CAGGAAAATGACGTGCAACA+AGG | - | chr5_4:8746847-8746866 | None:intergenic | 45.0% | |
| !! | CTTGTTGCACGTCATTTTCC+TGG | + | chr5_4:8746845-8746864 | Msa0835410:CDS | 45.0% |
| GATTTATGGGGTGCATTTCG+GGG | + | chr5_4:8747035-8747054 | Msa0835410:CDS | 45.0% | |
| CTTTAAACTCGCCGTATCCA+TGG | - | chr5_4:8747061-8747080 | None:intergenic | 45.0% | |
| CATCAGCTCTCTGACCATAA+TGG | + | chr5_4:8747082-8747101 | Msa0835410:CDS | 45.0% | |
| CCAGTGGAGAAATATGTCCA+GGG | + | chr5_4:8747183-8747202 | Msa0835410:CDS | 45.0% | |
| AGAAATATGTCCAGGGACTG+AGG | + | chr5_4:8747190-8747209 | Msa0835410:CDS | 45.0% | |
| TGCTTGCTCTATACATGCTG+TGG | + | chr5_4:8747229-8747248 | Msa0835410:CDS | 45.0% | |
| CAACCAGAAATGAATGTCCG+AGG | - | chr5_4:8747447-8747466 | None:intergenic | 45.0% | |
| GACACAAGTTTGCATCTGCA+CGG | + | chr5_4:8747970-8747989 | Msa0835410:three_prime_UTR | 45.0% | |
| !!! | ACGTTTGCGTGTTTTGGGAC+AGG | - | chr5_4:8743715-8743734 | None:intergenic | 50.0% |
| ! | GGGTTTTCATGCTGAACGTG+AGG | - | chr5_4:8743745-8743764 | None:intergenic | 50.0% |
| AGGGTCAACAACGACATGAG+AGG | - | chr5_4:8743926-8743945 | None:intergenic | 50.0% | |
| CATGTCGTTGTTGACCCTTC+AGG | + | chr5_4:8743928-8743947 | Msa0835410:CDS | 50.0% | |
| GTTCCAACAACACGTTCTCC+AGG | - | chr5_4:8744930-8744949 | None:intergenic | 50.0% | |
| TTGTTGGGTGTGGTGCTCTA+GGG | + | chr5_4:8745698-8745717 | Msa0835410:intron | 50.0% | |
| TGCCGAGGTTAATAGCCAGA+GGG | - | chr5_4:8745836-8745855 | None:intergenic | 50.0% | |
| ATGCCGAGGTTAATAGCCAG+AGG | - | chr5_4:8745837-8745856 | None:intergenic | 50.0% | |
| TTTGGCATCTGGGCTAAAGG+CGG | + | chr5_4:8745927-8745946 | Msa0835410:CDS | 50.0% | |
| GGGTAGGTAGTTAGATGCAG+AGG | + | chr5_4:8746166-8746185 | Msa0835410:intron | 50.0% | |
| GTGGTACGTAATCAGGTCTC+AGG | + | chr5_4:8746231-8746250 | Msa0835410:intron | 50.0% | |
| ACTGGGCATACCATGAATGC+AGG | - | chr5_4:8746279-8746298 | None:intergenic | 50.0% | |
| ! | GTTTACATCAGGCCTTGTGG+TGG | + | chr5_4:8746450-8746469 | Msa0835410:intron | 50.0% |
| TCTTCCAAAGGAAGGGGTCT+AGG | - | chr5_4:8746573-8746592 | None:intergenic | 50.0% | |
| CGTTCGTCTTCCAAAGGAAG+GGG | - | chr5_4:8746579-8746598 | None:intergenic | 50.0% | |
| GCGTTCGTCTTCCAAAGGAA+GGG | - | chr5_4:8746580-8746599 | None:intergenic | 50.0% | |
| CTAACGCGTTCGTCTTCCAA+AGG | - | chr5_4:8746585-8746604 | None:intergenic | 50.0% | |
| ! | CTTTGGAAGACGAACGCGTT+AGG | + | chr5_4:8746583-8746602 | Msa0835410:CDS | 50.0% |
| GACGGCCTTTGTACACTGAA+TGG | - | chr5_4:8746977-8746996 | None:intergenic | 50.0% | |
| ! | TCCACTGGCCTCAATAGTAC+TGG | - | chr5_4:8747171-8747190 | None:intergenic | 50.0% |
| GCCAGTGGAGAAATATGTCC+AGG | + | chr5_4:8747182-8747201 | Msa0835410:CDS | 50.0% | |
| CCCTGGACATATTTCTCCAC+TGG | - | chr5_4:8747186-8747205 | None:intergenic | 50.0% | |
| AATATGTCCAGGGACTGAGG+AGG | + | chr5_4:8747193-8747212 | Msa0835410:CDS | 50.0% | |
| ATTGAGCACGGGGAACAATG+AGG | - | chr5_4:8747325-8747344 | None:intergenic | 50.0% | |
| ! | GTCATTTCAGGTGCTCAGTG+TGG | + | chr5_4:8747730-8747749 | Msa0835410:intron | 50.0% |
| TCAGTGTGGAGCTGGATCTT+TGG | + | chr5_4:8747744-8747763 | Msa0835410:CDS | 50.0% | |
| ! | TGGAGCTGGATCTTTGGCTT+TGG | + | chr5_4:8747750-8747769 | Msa0835410:CDS | 50.0% |
| !! | GGAGCTGGATCTTTGGCTTT+GGG | + | chr5_4:8747751-8747770 | Msa0835410:CDS | 50.0% |
| !! | GATCTTTGGCTTTGGGCAAC+TGG | + | chr5_4:8747758-8747777 | Msa0835410:CDS | 50.0% |
| !!! | GCGTGTTTTGGGACAGGAGT+AGG | - | chr5_4:8743709-8743728 | None:intergenic | 55.0% |
| ACGTTCGAGCTACCTCTGCT+TGG | + | chr5_4:8743887-8743906 | Msa0835410:CDS | 55.0% | |
| CGTTCGAGCTACCTCTGCTT+GGG | + | chr5_4:8743888-8743907 | Msa0835410:CDS | 55.0% | |
| GTTGTTGGGTGTGGTGCTCT+AGG | + | chr5_4:8745697-8745716 | Msa0835410:intron | 55.0% | |
| ATTGCCTCAAGGGCTTGAGC+AGG | + | chr5_4:8746332-8746351 | Msa0835410:intron | 55.0% | |
| TTGGCCTAGACCCCTTCCTT+TGG | + | chr5_4:8746566-8746585 | Msa0835410:CDS | 55.0% | |
| CGCGTTCGTCTTCCAAAGGA+AGG | - | chr5_4:8746581-8746600 | None:intergenic | 55.0% | |
| GCATTTCGGGGCCATGGATA+CGG | + | chr5_4:8747047-8747066 | Msa0835410:CDS | 55.0% | |
| GCCAGTACTATTGAGGCCAG+TGG | + | chr5_4:8747167-8747186 | Msa0835410:CDS | 55.0% | |
| TCAACTTCCTCCTCAGTCCC+TGG | - | chr5_4:8747203-8747222 | None:intergenic | 55.0% | |
| GTGACTAGCGACCCAAGCAG+AGG | - | chr5_4:8743902-8743921 | None:intergenic | 60.0% | |
| ACGAACACCGGACACGACAC+TGG | + | chr5_4:8744233-8744252 | Msa0835410:intron | 60.0% | |
| GGTTCCTGCTCAAGCCCTTG+AGG | - | chr5_4:8746339-8746358 | None:intergenic | 60.0% | |
| CCAAGCTGCTGAAGCACAGC+TGG | - | chr5_4:8747122-8747141 | None:intergenic | 60.0% | |
| CCAGCTGTGCTTCAGCAGCT+TGG | + | chr5_4:8747119-8747138 | Msa0835410:CDS | 60.0% | |
| GAGCACGGGGAACAATGAGG+AGG | - | chr5_4:8747322-8747341 | None:intergenic | 60.0% | |
| TCAGGTGCTCAGTGTGGAGC+TGG | + | chr5_4:8747736-8747755 | Msa0835410:intron | 60.0% | |
| TGGGGTGCATTTCGGGGCCA+TGG | + | chr5_4:8747041-8747060 | Msa0835410:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 8743697 | 8748065 | 8743697 | ID=Msa0835410;Name=Msa0835410 |
| chr5_4 | mRNA | 8743697 | 8748065 | 8743697 | ID=Msa0835410-mRNA-1;Parent=Msa0835410;Name=Msa0835410-mRNA-1;_AED=0.07;_eAED=0.07;_QI=183|1|1|1|1|1|7|233|305 |
| chr5_4 | exon | 8743697 | 8743949 | 8743697 | ID=Msa0835410-mRNA-1:exon:3840;Parent=Msa0835410-mRNA-1 |
| chr5_4 | exon | 8744036 | 8744176 | 8744036 | ID=Msa0835410-mRNA-1:exon:3841;Parent=Msa0835410-mRNA-1 |
| chr5_4 | exon | 8745905 | 8746003 | 8745905 | ID=Msa0835410-mRNA-1:exon:3842;Parent=Msa0835410-mRNA-1 |
| chr5_4 | exon | 8746541 | 8746617 | 8746541 | ID=Msa0835410-mRNA-1:exon:3843;Parent=Msa0835410-mRNA-1 |
| chr5_4 | exon | 8746758 | 8746866 | 8746758 | ID=Msa0835410-mRNA-1:exon:3844;Parent=Msa0835410-mRNA-1 |
| chr5_4 | exon | 8746964 | 8747292 | 8746964 | ID=Msa0835410-mRNA-1:exon:3845;Parent=Msa0835410-mRNA-1 |
| chr5_4 | exon | 8747740 | 8748065 | 8747740 | ID=Msa0835410-mRNA-1:exon:3846;Parent=Msa0835410-mRNA-1 |
| chr5_4 | five_prime_UTR | 8743697 | 8743879 | 8743697 | ID=Msa0835410-mRNA-1:five_prime_utr;Parent=Msa0835410-mRNA-1 |
| chr5_4 | CDS | 8743880 | 8743949 | 8743880 | ID=Msa0835410-mRNA-1:cds;Parent=Msa0835410-mRNA-1 |
| chr5_4 | CDS | 8744036 | 8744176 | 8744036 | ID=Msa0835410-mRNA-1:cds;Parent=Msa0835410-mRNA-1 |
| chr5_4 | CDS | 8745905 | 8746003 | 8745905 | ID=Msa0835410-mRNA-1:cds;Parent=Msa0835410-mRNA-1 |
| chr5_4 | CDS | 8746541 | 8746617 | 8746541 | ID=Msa0835410-mRNA-1:cds;Parent=Msa0835410-mRNA-1 |
| chr5_4 | CDS | 8746758 | 8746866 | 8746758 | ID=Msa0835410-mRNA-1:cds;Parent=Msa0835410-mRNA-1 |
| chr5_4 | CDS | 8746964 | 8747292 | 8746964 | ID=Msa0835410-mRNA-1:cds;Parent=Msa0835410-mRNA-1 |
| chr5_4 | CDS | 8747740 | 8747832 | 8747740 | ID=Msa0835410-mRNA-1:cds;Parent=Msa0835410-mRNA-1 |
| chr5_4 | three_prime_UTR | 8747833 | 8748065 | 8747833 | ID=Msa0835410-mRNA-1:three_prime_utr;Parent=Msa0835410-mRNA-1 |
| Gene Sequence |
| Protein sequence |
